Query psy8678
Match_columns 394
No_of_seqs 254 out of 1532
Neff 8.1
Searched_HMMs 46136
Date Sat Aug 17 00:55:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8678.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8678hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03524 GldJ gliding motilit 100.0 8.6E-66 1.9E-70 508.1 23.2 360 10-393 56-546 (559)
2 TIGR03530 GldJ_short gliding m 100.0 3.8E-61 8.1E-66 469.3 22.4 307 10-394 61-399 (402)
3 TIGR03529 GldK_short gliding m 100.0 2.5E-55 5.3E-60 425.7 21.1 268 11-345 50-340 (344)
4 TIGR03525 GldK gliding motilit 100.0 1.5E-53 3.2E-58 417.9 24.1 325 9-346 35-446 (449)
5 PF03781 FGE-sulfatase: Sulfat 100.0 1.5E-51 3.2E-56 389.1 12.2 246 12-341 2-260 (260)
6 TIGR03440 unchr_TIGR03440 cons 100.0 1.5E-48 3.2E-53 386.9 20.4 235 11-340 166-406 (406)
7 TIGR02171 Fb_sc_TIGR02171 Fibr 100.0 1.5E-48 3.2E-53 404.0 20.2 243 11-345 35-285 (912)
8 COG1262 Uncharacterized conser 100.0 1.7E-46 3.7E-51 360.0 15.9 245 9-343 47-313 (314)
9 TIGR03525 GldK gliding motilit 99.1 4.1E-11 8.9E-16 118.9 3.7 74 76-161 232-324 (449)
10 TIGR02171 Fb_sc_TIGR02171 Fibr 99.0 1.4E-09 3.1E-14 114.7 8.6 43 348-393 238-283 (912)
11 TIGR03529 GldK_short gliding m 98.7 1.1E-08 2.4E-13 100.0 3.3 48 114-161 155-219 (344)
12 PF03781 FGE-sulfatase: Sulfat 98.4 1.2E-07 2.5E-12 89.5 2.9 52 113-164 87-144 (260)
13 PHA00653 mtd major tropism det 98.3 1.7E-06 3.7E-11 80.9 6.8 137 182-343 235-377 (381)
14 TIGR03440 unchr_TIGR03440 cons 98.1 1.1E-06 2.4E-11 88.0 2.7 38 114-151 268-305 (406)
15 COG1262 Uncharacterized conser 98.0 3.7E-06 8E-11 81.3 3.8 46 114-159 133-183 (314)
16 TIGR03524 GldJ gliding motilit 97.3 0.00015 3.3E-09 73.6 2.9 46 297-345 503-548 (559)
17 TIGR03530 GldJ_short gliding m 97.2 0.00023 5.1E-09 70.7 3.2 43 298-343 356-398 (402)
18 PF07603 DUF1566: Protein of u 75.5 2.6 5.6E-05 34.5 2.8 30 180-209 28-63 (124)
19 PHA02673 ORF109 EEV glycoprote 56.9 8.8 0.00019 33.0 2.4 20 183-202 93-112 (161)
20 PF00193 Xlink: Extracellular 44.9 25 0.00053 27.6 3.0 39 182-220 13-51 (92)
21 PHA00653 mtd major tropism det 41.1 15 0.00033 35.3 1.5 39 349-393 336-377 (381)
22 cd03518 Link_domain_HAPLN_modu 38.7 56 0.0012 25.8 4.1 40 181-220 12-51 (95)
23 cd03601 CLECT_TC14_like C-type 34.8 23 0.00051 28.6 1.6 19 182-200 9-27 (119)
24 cd03520 Link_domain_CSPGs_modu 34.1 72 0.0016 25.3 4.1 39 182-220 10-48 (96)
25 cd03515 Link_domain_TSG_6_like 33.3 86 0.0019 24.7 4.4 39 182-220 13-51 (93)
26 cd03516 Link_domain_CD44_like 32.8 69 0.0015 27.3 4.0 39 182-220 18-56 (144)
27 cd03592 CLECT_selectins_like C 31.7 32 0.00069 27.4 1.9 28 182-209 9-39 (115)
28 smart00445 LINK Link (Hyaluron 31.1 74 0.0016 25.1 3.7 40 181-220 13-52 (94)
29 cd03599 CLECT_DGCR2_like C-typ 31.1 35 0.00076 29.4 2.1 20 182-201 21-40 (153)
30 PF05966 Chordopox_A33R: Chord 30.2 26 0.00057 31.2 1.1 22 183-204 122-143 (190)
31 TIGR02145 Fib_succ_major Fibro 29.4 21 0.00046 31.4 0.5 26 184-210 51-77 (171)
32 PF00059 Lectin_C: Lectin C-ty 29.2 22 0.00048 27.1 0.5 29 183-211 3-34 (105)
33 PF09603 Fib_succ_major: Fibro 28.9 32 0.0007 30.1 1.5 16 196-211 73-88 (184)
34 cd01102 Link_Domain The link d 28.8 85 0.0018 24.6 3.7 40 181-220 12-51 (92)
35 PHA02953 IEV and EEV membrane 28.2 46 0.001 29.2 2.4 22 182-203 65-86 (170)
36 PF07979 Intimin_C: Intimin C- 27.0 24 0.00051 28.2 0.3 23 181-203 11-33 (101)
37 PHA03093 EEV glycoprotein; Pro 26.8 55 0.0012 29.0 2.5 20 183-202 118-137 (185)
38 cd03595 CLECT_chondrolectin_li 25.6 46 0.001 28.2 1.9 21 181-201 23-43 (149)
39 cd03517 Link_domain_CSPGs_modu 25.0 1.2E+02 0.0026 24.0 3.9 40 182-221 13-52 (95)
40 cd03600 CLECT_thrombomodulin_l 23.9 48 0.001 27.6 1.6 27 182-208 13-42 (141)
41 cd03591 CLECT_collectin_like C 23.7 45 0.00097 26.5 1.4 27 181-207 9-38 (114)
42 cd03588 CLECT_CSPGs C-type lec 23.6 49 0.0011 26.8 1.6 28 182-209 19-49 (124)
43 cd03603 CLECT_VCBS A bacterial 23.2 56 0.0012 26.3 1.9 30 181-210 8-40 (118)
44 cd03596 CLECT_tetranectin_like 22.4 58 0.0013 26.5 1.8 28 182-209 18-48 (129)
45 cd00037 CLECT C-type lectin (C 20.6 1E+02 0.0022 23.3 2.9 30 182-211 9-41 (116)
No 1
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=8.6e-66 Score=508.10 Aligned_cols=360 Identities=28% Similarity=0.392 Sum_probs=240.5
Q ss_pred CCCCCcEEeCCeeeEccCCCCCCCCCCCCCceEEEccceEeeecccCHHHHHHHHHHcCCcch---hh-------hcCCc
Q psy8678 10 ERYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTE---AE-------KFGDT 79 (394)
Q Consensus 10 ~~~~~mv~IpgG~f~mG~~~~~~~~~~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~~~---~~-------~~~~~ 79 (394)
+..++||.||||+|.||+.+++++.+++.++|+|+|++|+|++|||||+||++||+++++... ++ .++++
T Consensus 56 ~~~p~MV~IPGG~F~MGs~~dd~~~d~en~phqV~V~~F~IdktpVTNaEYlaFVeat~~~~~~~ea~~~~i~~~~lPdt 135 (559)
T TIGR03524 56 EAPPGLVFVEGGTFTMGQVQDDVMHDWNNTPTQQHVQSFYMDETEVTNSMYLEYLQYLKDVFPPSEANYKNIYSGALPDT 135 (559)
T ss_pred CCCCceEEECCcEEEeCCCCCccccccCCCceEEEECCeEEECceecHHHHHHHHHHhccCCCccccccccceecccCCc
Confidence 457899999999999999888888889999999999999999999999999999999975432 11 34566
Q ss_pred ccccCCccHHHHHhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCcc------
Q psy8678 80 FVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLE------ 153 (394)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~------ 153 (394)
.+|+..++.+......+++|+. +.+||||||||+||.+||.|+++++++.++.+.+......
T Consensus 136 ~vWr~~~~~ne~~~~~y~rhP~------------y~~yPVVgVSW~qA~AYc~Wrt~~~ne~~~~~~g~~~~~~~~~~~~ 203 (559)
T TIGR03524 136 LVWRNRLGNNETMTENYLRHPA------------YADYPVVGVSWIQAVEFSKWRTNRVNEKVLEDKGNIKKGAKIDVTA 203 (559)
T ss_pred eeeecccCcccccccccccCCc------------ccCCCEeeeCHHHHHHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence 6666655544444344443332 5689999999999999999999999998776433221000
Q ss_pred CccCCCCCccc-c----CCcCCccccc---cCCC---cccCCHHHHHHHHHH------cCCCCCCHHHHHHHHhcCCCC-
Q psy8678 154 NRLFPWGSWLH-P----EGIDSTIEHR---MNHP---VVHVSWNDAVAYCTW------RGARLPTEAEWEYGCRGGLEN- 215 (394)
Q Consensus 154 ~~~~~~~~w~~-~----~~~~~~~~~~---~~~P---v~~Vsw~dA~~yc~w------lg~RLPTEaEWEyAArg~~~~- 215 (394)
...|+...++. | .|......+. ...+ ...+.=..+..||+. .+|||||||||||||||+...
T Consensus 204 ~~~f~t~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~YRLPTEAEWEYAARGG~~~~ 283 (559)
T TIGR03524 204 SSFFDTDVYLVDPSKTYGGDTTVYKRGIGRTRRKKGEARPAVPEEKDAYQQRKDGIITQRYRLPTEAEWEYAAKANVGNR 283 (559)
T ss_pred ccccchhhhhcCccccccccchhhcccccccccccccccccccchhhhhhhhcccccccCCCCCCHHHHHHHHhCCCCCc
Confidence 01122111111 1 0111000000 0000 112333456677776 368999999999999998654
Q ss_pred --------ccccCCCCCCC------CCccccccccCCCCCC---CCCCCCCCccccCcCCCCCcccccccccCHHHhccc
Q psy8678 216 --------RLFPWGNNLTP------RGEHRANVWQGEFPTN---NTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTAD 278 (394)
Q Consensus 216 --------~~ypwg~~~~~------~~~~~an~~~~~~~~~---~~~~~g~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d 278 (394)
..||||+...+ .++.+||+|++.++.. ....||+..|+|||+|+||+||||||+|||||||.|
T Consensus 284 ~~n~~~~~~~YPWG~~~~~~~~~~~~g~~~ANf~~g~g~y~~~ag~~~DG~~~TapVgsf~pN~~GLYDM~GNV~EW~~D 363 (559)
T TIGR03524 284 EYNNYRGRKKYPWNGKYTRSKNRRNRGDQLANFKQGKGDYGGIAGWSDDGADITNEIKSYPPNDFGLYDMAGNVAEWVAD 363 (559)
T ss_pred cccccccccccCCCCccCccccccccccceeeeccccCCccccccccccCCcccccccccCCCCCceeecCCchhhhccc
Confidence 57999987643 4567899999987654 345788899999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCCCCCeEEeCccccCCcc---ccccc--------------eeccccCC---------------
Q psy8678 279 WWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLCNEQ---YCYRH--------------RCAARSQN--------------- 326 (394)
Q Consensus 279 ~y~~~~~~~~~~~~~~~~~g~~~v~rGGs~~~~~~---~~~~~--------------r~~~r~~~--------------- 326 (394)
+|++....+. ......|||+|..... ....+ +..+|...
T Consensus 364 ~y~p~~~~~~---------~d~~~~rG~~~~~~~~~~~g~~~~~~~~~~~ydtl~ng~~~~~~~pg~~~~~~~~~~~~~~ 434 (559)
T TIGR03524 364 VYRPIIDNEA---------NDFNYYRGNLYTKNMIDSDGNVVFAGTQEIEYDTLPNGKVVARYLPGEIAQVPVDKNETYL 434 (559)
T ss_pred ccccccccCc---------ccceeEecCcccccccCCCCceEEecccceeeeeccCCceeeccCCCceeeeecCccchhh
Confidence 9998654321 1234455555542100 00000 00000000
Q ss_pred -CCCCCCCCCCcc----------------------------------------cccc-------CCCCCCCcccccCCcc
Q psy8678 327 -TPDSSAGNLGFR----------------------------------------CAAD-------KGPTTGTDKVKKGGSY 358 (394)
Q Consensus 327 -~~~~~~~~iGFR----------------------------------------~v~~-------~~~~~~~~~~~~ggsw 358 (394)
.-....+++.|| +++. ..+..+..||+|||||
T Consensus 435 r~~~~~~d~~~~~dgd~~ss~~~~~~~~~~~~~~~~~my~~p~~~~~~~~~g~~~~~~d~~~~rttli~d~~RVlRGGSW 514 (559)
T TIGR03524 435 RTNFSKSDNANIRDGDKQSSRYYEFGDDEDEIARRPSMYNSPKSPIEIDPVGGMIVLYDDDKKRTTLIDDRVRVYKGGSW 514 (559)
T ss_pred hhcccccccccccccccccchhhccccccccccccchhccCcccccccccccceeeecccccCceeeecCCeEEeecCCc
Confidence 000011122222 1211 1234477899999999
Q ss_pred ccCCCccccccccccCCCCCCCCCCCcceEEEeec
Q psy8678 359 LCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADV 393 (394)
Q Consensus 359 ~~~~~~~~~~~~~~r~~~~~~~~~~~~gfr~~~~~ 393 (394)
.+ .+||+|||+|++..|+.+..+|||||||++
T Consensus 515 ~~---~~~~~r~A~R~~~~~~~~~~~iGFR~a~~~ 546 (559)
T TIGR03524 515 RD---REYWLDPAQRRYLPQYMATDYIGFRCAMSR 546 (559)
T ss_pred CC---CccccchhhccCCCccccccceeEEEEecc
Confidence 96 455669999999999999999999999975
No 2
>TIGR03530 GldJ_short gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. This model represents the GldJ homolog in Cytophaga hutchinsonii and several other species which is of shorter architecture than that found in Flavobacterium johnsoniae and is represented by a separate model (TIGR03524). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.8e-61 Score=469.26 Aligned_cols=307 Identities=26% Similarity=0.420 Sum_probs=209.7
Q ss_pred CCCCCcEEeCCeeeEccCCCCCCCCCCCCCceEEEccceEeeecccCHHHHHHHHHHcCCcchhhh----cCCcccccCC
Q psy8678 10 ERYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAEK----FGDTFVFEPL 85 (394)
Q Consensus 10 ~~~~~mv~IpgG~f~mG~~~~~~~~~~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~~~~~~----~~~~~~~~~~ 85 (394)
+..++||.||||+|+||+++++.+.+.+.|+|+|+|++|+|++|||||+||++||+++++...++. .++..+|...
T Consensus 61 ~~gp~MV~IPgG~F~MGs~~~d~~~~~d~p~h~V~v~~F~Id~~eVTn~qy~~Fv~a~~~~~~ae~~~~~~p~~~~w~~~ 140 (402)
T TIGR03530 61 IEGPNLKFIEGGRAVLGSFEEDLMAFGDNLERTVTIANFYMDETEIANIDWLEFLFNMKKDSSADFIEKAEPDEDVWAGE 140 (402)
T ss_pred CCCCCeEEECCcEEEeCCCcccccccccCCceEEEECCEEEEcccccHHHHHHHHHHhCCCcchhhccccCCCccccccc
Confidence 446899999999999999877666666788999999999999999999999999999988765542 2333333322
Q ss_pred ccHHHHHhhhhhccccccccCCcccc--cccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCcc
Q psy8678 86 LSEEERAKISQVRHDMKRFEGLDSTI--EHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWL 163 (394)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~ 163 (394)
+..+.... ..++ ..+.+||||+|||+||++||+|+++++++.++.+ .|+. ..|
T Consensus 141 ~~~~~~~~--------------~~~~r~pg~~~~PVV~VSW~DA~aYc~Wls~~~~~~~~~~----~g~~-~~~------ 195 (402)
T TIGR03530 141 LAFNDLYQ--------------DHYFRFPGFNFFPVAGVNWIQANAYCIWRTEVVNELLAEE----AGID-SPE------ 195 (402)
T ss_pred cccccccc--------------cccccCCCccCCCeeecCHHHHHHHHHHhhhhchhhhhhh----cccc-ccc------
Confidence 21110000 1111 2345799999999999999999999887765432 1211 000
Q ss_pred ccCCcCCccccccCCCcccCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCC----------CccccCCCCCCC-------
Q psy8678 164 HPEGIDSTIEHRMNHPVVHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLE----------NRLFPWGNNLTP------- 226 (394)
Q Consensus 164 ~~~~~~~~~~~~~~~Pv~~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~----------~~~ypwg~~~~~------- 226 (394)
++ .+ +...+.+.. ..|||||||||||||||+.. .+.||||+....
T Consensus 196 ------~~----g~-----~~~~~g~~~---~~yRLPTEAEWEYAARgg~~~~~~~~~~~~~~~ypWg~~~~~~~~~~~~ 257 (402)
T TIGR03530 196 ------GG----GQ-----IPIERGVAL---ADFRLPNEAEWEYAAKALIGNQWLDENQEHGRIYPWDGHALRNPYNVKR 257 (402)
T ss_pred ------cc----cc-----ccccccccc---ccCcCCCHHHHHHHHhcCCCCcccccccccccccCCCCccccCcccccc
Confidence 00 00 011111111 26899999999999999753 457999977431
Q ss_pred ----CCccccccccCCCCC----CCCCCCCCCccccCcCCCCCcccccccccCHHHhccccccCCCCC-CCCCCCCCCCC
Q psy8678 227 ----RGEHRANVWQGEFPT----NNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHP-APSYNPKGPTT 297 (394)
Q Consensus 227 ----~~~~~an~~~~~~~~----~~~~~~g~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d~y~~~~~~-~~~~~~~~~~~ 297 (394)
.+..++|++++.++. .+...+++..|+||++++||+||||||+|||||||+|+|++.... .+..++..
T Consensus 258 ~g~~~~~~~AN~~~g~g~y~~~~~~~~~dg~~~t~pvg~~~~N~~Glydm~GNv~EW~~D~~~~~~y~~~~~~n~~~--- 334 (402)
T TIGR03530 258 KGKQMGDFLANFKRGRGDYAGIAGNKLNDGAIIPTNIYDFAPNDFGLYCMAGNMNEWVYDVYRPLSFQDFDDLNPLR--- 334 (402)
T ss_pred ccccccccceeeccCcCCcccccCCccccCCcccccccccCCCCCceeecCCCHHHhhcccccccccccccccCCCC---
Confidence 235689999887653 235678888999999999999999999999999999999874222 12222210
Q ss_pred CCCeEEeCccccCCccccccceeccccCCCCCCCCCCCCccccccCCCCCCCcccccCCccccCCCccccccccccCCCC
Q psy8678 298 GTDKVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPTTGTDKVKKGGSYLCNEQYCYRHRCAARSQNT 377 (394)
Q Consensus 298 g~~~v~rGGs~~~~~~~~~~~r~~~r~~~~~~~~~~~iGFR~v~~~~~~~~~~~~~~ggsw~~~~~~~~~~~~~~r~~~~ 377 (394)
. .|+- .... ..+..+| ..+.....||+|||||.+.+.+| |++.|.+..
T Consensus 335 ~------~g~~-~~~~-----------------~~~~~~~-----~~~~~~~~RVlRGGSW~~~~~~~---Rsa~R~~~~ 382 (402)
T TIGR03530 335 K------DGFF-DEEE-----------------GYDKAGF-----QSLLDDEFRVYKGGSWKDVAYWL---SPGTRRFLA 382 (402)
T ss_pred C------CCcc-cccc-----------------ccccccc-----cccCCCceEEEeCCCCCCcccce---eeeecCCCC
Confidence 0 0000 0000 0000111 11223456999999999866666 999999999
Q ss_pred CCCCCCCcceEEEeecC
Q psy8678 378 PDSSAGNLGFRCAADVS 394 (394)
Q Consensus 378 ~~~~~~~~gfr~~~~~~ 394 (394)
|+.+..+|||||||+.+
T Consensus 383 p~~~~~~iGFR~a~~~~ 399 (402)
T TIGR03530 383 EDSATAAIGFRCAMIQA 399 (402)
T ss_pred CCccCCceeEEEEEecc
Confidence 99999999999999863
No 3
>TIGR03529 GldK_short gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. This model represents a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture than that found in Flavobacterium johnsoniae and related species (represented by (TIGR03525). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.5e-55 Score=425.68 Aligned_cols=268 Identities=32% Similarity=0.544 Sum_probs=179.2
Q ss_pred CCCCcEEeCCeeeEccCCCCCCCCCCCCCceEEEccceEeeecccCHHHHHHHHHHcCCc--chhhhcCCcccccCCccH
Q psy8678 11 RYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYV--TEAEKFGDTFVFEPLLSE 88 (394)
Q Consensus 11 ~~~~mv~IpgG~f~mG~~~~~~~~~~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~--~~~~~~~~~~~~~~~~~~ 88 (394)
...+||.||+|+|+||+..++...+.++|.|+|+|++|+|++|||||+||++|+++++.. ......+..+......++
T Consensus 50 ~~~~mv~Ip~G~f~mGs~~~~~~~~~e~p~h~V~l~~F~i~~~eVTn~qy~~f~~~~~~~~~~~g~~~p~~~~~~~~~~~ 129 (344)
T TIGR03529 50 VPVGMVVIPAGTFHMGQADEDVPATQINLNKQITISEFFMDKTEVTNNKYRQFLEVVLEGQLATGTPLPPEYDMEELYPD 129 (344)
T ss_pred CCCCeEEECCCEEEcCCCCccCcccccCCcceEEECCeEEeCccccHHHHHHHHHhhccccccccccCCcccccccccCC
Confidence 457899999999999998776666778999999999999999999999999999875311 110011110000000000
Q ss_pred HHHHhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCccccCCc
Q psy8678 89 EERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGI 168 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~~~~~ 168 (394)
.. .|.....+..+ +..++. .+.+|
T Consensus 130 ~~-----~w~~~~~~~~~-~~~~~~-----------------------------------------------~~~~p--- 153 (344)
T TIGR03529 130 TT-----VWSTSFSHHMG-DPLMEY-----------------------------------------------YFDHP--- 153 (344)
T ss_pred cc-----ccccccccccC-cccccc-----------------------------------------------cccCc---
Confidence 00 00000000000 000000 00000
Q ss_pred CCccccccCCCcccCCHHHHHHHHHHc-----------------CCCCCCHHHHHHHHhcCCCCccccCCCCCC--CCCc
Q psy8678 169 DSTIEHRMNHPVVHVSWNDAVAYCTWR-----------------GARLPTEAEWEYGCRGGLENRLFPWGNNLT--PRGE 229 (394)
Q Consensus 169 ~~~~~~~~~~Pv~~Vsw~dA~~yc~wl-----------------g~RLPTEaEWEyAArg~~~~~~ypwg~~~~--~~~~ 229 (394)
..+++||++|||+||++||+|+ ++|||||+||||||||+...+.||||+... ...+
T Consensus 154 -----~~~~~PVv~VSW~dA~ayc~Wls~~~~~~~~~~~~~~~~~~RLPTEAEWEyAARgg~~~~~ypwG~~~~~~~~~~ 228 (344)
T TIGR03529 154 -----AFDNYPVVGVDWNAAKQFCEWRTYHMNAYRNEESQYDMPRFRLPSEAEWEYAARGGRDMAKYPWGGPYLRNKRGC 228 (344)
T ss_pred -----cccCCCcccCCHHHHHHHHHHHhhhccccccccccccCCcccCcCHHHHHHHHhCCCCCCcCCCCCccCCCcccc
Confidence 1135566666666666666665 489999999999999988888899997643 2334
Q ss_pred cccccccCCCCCCCCCCCCCCccccCcCCCCCcccccccccCHHHhccccccCCCCCCC-CCCCCC-CCCCCCeEEeCcc
Q psy8678 230 HRANVWQGEFPTNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAP-SYNPKG-PTTGTDKVKKGGS 307 (394)
Q Consensus 230 ~~an~~~~~~~~~~~~~~g~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d~y~~~~~~~~-~~~~~~-~~~g~~~v~rGGs 307 (394)
..+|+..+. .+...+++..++||++++||+||||||+|||||||.|+|.+...... ..++.. ...+..+|+||||
T Consensus 229 ~~a~~~~~~---~~~~~~g~~~t~pVgs~~pN~~GLyDM~GNVwEW~~D~y~~~~~~~~~~~~p~~~~~~~~~rVvRGGS 305 (344)
T TIGR03529 229 MLANFKPGR---GNYYDDGFPYTAPVAVYFPNDFGLYDMAGNVAEWVLDAYAATSVPIVWDLNPVYEDPNEVRKIIRGGS 305 (344)
T ss_pred ccccccccc---CcccccCCcccccccccCCCCCCeeecCCChhhhccccccccccccccccCccccCCCCceeeecCCC
Confidence 556654332 23334566679999999999999999999999999999988643321 123322 1235689999999
Q ss_pred ccCCccccccceeccccCCCCCCCCCCCCccccccCCC
Q psy8678 308 YLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGP 345 (394)
Q Consensus 308 ~~~~~~~~~~~r~~~r~~~~~~~~~~~iGFR~v~~~~~ 345 (394)
|.+.+..| |++.|....|+.+..+||||||++...
T Consensus 306 w~~~~~~~---r~~~R~~~~p~~~~~~iGFR~v~~~~~ 340 (344)
T TIGR03529 306 WKDIAYYL---ETGTRTFEYEDVSQAHIGFRTVMTYLG 340 (344)
T ss_pred CCCChhhc---cceecCCCCCCCccCCEEEEEEeecCC
Confidence 99888764 899999999999999999999988644
No 4
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.5e-53 Score=417.92 Aligned_cols=325 Identities=30% Similarity=0.470 Sum_probs=205.4
Q ss_pred CCCCCCcEEeCCeeeEccCCCCCCCCCCCCCceEEEccceEeeecccCHHHHHHHHHHcCCcchhhhc-------C----
Q psy8678 9 VERYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAEKF-------G---- 77 (394)
Q Consensus 9 ~~~~~~mv~IpgG~f~mG~~~~~~~~~~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~~~~~~~-------~---- 77 (394)
.+.+.+||.||+|+|.||...+++.+|+|.|.|+|.|.+|+||++||||+||++|++|.....-..++ |
T Consensus 35 ~~~p~~mv~IpgG~f~mG~~~~d~a~DnE~P~h~V~V~~F~id~~pVTNaEy~~FVe~vrdsi~r~~~a~~a~~~~~~~~ 114 (449)
T TIGR03525 35 PEKPYGMVLVPGGSFIMGKSDEDIAGVMNAPTKTVTVRSFYMDETEITNSEYRQFVEWVRDSIVRTKLAELADLAGIGPG 114 (449)
T ss_pred CCCCCceEEECCcEEEeCCCCCCcccccCCCceeEEECceEeECccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCC
Confidence 45578999999999999998877888999999999999999999999999999999996433211111 0
Q ss_pred Cc----ccccCCccHH------HHHhh-hh--------------hcccccc--ccCC-ccccc--c----cCCCc-----
Q psy8678 78 DT----FVFEPLLSEE------ERAKI-SQ--------------VRHDMKR--FEGL-DSTIE--H----RMHHP----- 118 (394)
Q Consensus 78 ~~----~~~~~~~~~~------~~~~~-~~--------------~~~~~~~--~~~~-~~~~~--~----~~~~P----- 118 (394)
++ +.+-..-+++ ....+ +. +..++.. ..-+ +.+.+ . ....|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~y~~~~~~~~g~~ 194 (449)
T TIGR03525 115 DGGGSIQDYAFKDAESDNATPYQKYMYDNYYSLGETDYAGRKLNKKTELIWDTSEYPDEYYVEVMDSLYLPEDESYNGLR 194 (449)
T ss_pred CCCcccchhcccccccccccchhhhccccccccccccccCccCCcccccccccccCCCHHHHHHhhhcccccccCcCCce
Confidence 00 0000000000 00000 00 0000000 0000 00000 0 00112
Q ss_pred -------eeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCccccC--CcC-------CccccccCCCccc
Q psy8678 119 -------VVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPE--GID-------STIEHRMNHPVVH 182 (394)
Q Consensus 119 -------V~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~~~--~~~-------~~~~~~~~~Pv~~ 182 (394)
+...+|+|-.+-+ +.. ...++|- +.-+.+++-++-.|...- +.. -......++||++
T Consensus 195 ~~d~~~~~~~y~~~d~~~a~--~~~----~~~~~f~-~~~~v~~~pdt~vw~~~~~~~~n~~~~~~y~~h~~y~d~PVV~ 267 (449)
T TIGR03525 195 TFDVTKLKYRYSWMDIDAAA--RSK----GSRKDFI-KTEEVQVYPDTTVWIKDFNYSYNEPMHNDYFWHQAYDDYPVVG 267 (449)
T ss_pred ecchhHheeEEEEeeHHHHh--hcc----Cccccce-ecceeeecCCcceEecccccccCchhhhhhccCcccCCCCccC
Confidence 2333444322211 000 0001100 000112222333343321 100 0012247899999
Q ss_pred CCHHHHHHHHHHcC-----------------CCCCCHHHHHHHHhcCCCCccccCCCCCCC--CCccccccccCCCCCCC
Q psy8678 183 VSWNDAVAYCTWRG-----------------ARLPTEAEWEYGCRGGLENRLFPWGNNLTP--RGEHRANVWQGEFPTNN 243 (394)
Q Consensus 183 Vsw~dA~~yc~wlg-----------------~RLPTEaEWEyAArg~~~~~~ypwg~~~~~--~~~~~an~~~~~~~~~~ 243 (394)
|||+||.+||+|++ +||||||||||||||+...+.||||+.... .++.++|+.... .+
T Consensus 268 VSW~dA~aFC~Wls~~~n~~~~~~g~~t~~~yRLPTEAEWEYAARGG~~~~~YPWG~~~~~~~~~~~~ANf~~~r---G~ 344 (449)
T TIGR03525 268 VTWKQARAFCNWRTKYKNDFRKKKGPANVNTFRLPTEAEWEYAARGGLEGATYPWGGPYTKNDRGCFMANFKPVR---GD 344 (449)
T ss_pred CCHHHHHHHHHHHhccccccccccccccCccccCCCHHHHHHHHhcCCCCCccCCCCCCCccchhhhhhcccccc---CC
Confidence 99999999999996 499999999999999988888999987543 345567775432 22
Q ss_pred CCCCCCCccccCcCCCCCcccccccccCHHHhccccccCCC-CCCCCCCCCCCC-CCCCeEEeCccccCCccccccceec
Q psy8678 244 TAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHH-HPAPSYNPKGPT-TGTDKVKKGGSYLCNEQYCYRHRCA 321 (394)
Q Consensus 244 ~~~~g~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d~y~~~~-~~~~~~~~~~~~-~g~~~v~rGGs~~~~~~~~~~~r~~ 321 (394)
...++...++||++++||+||||||+|||||||.|+|.+.. ...+..+|.... .+..+|+|||||.+.+.. +|++
T Consensus 345 ~~~dg~~~T~pVgs~~pN~fGLYDMaGNVwEWt~D~Y~~~~y~~~~~~nP~~~~~~~~~RVvRGGSW~d~a~~---lRsa 421 (449)
T TIGR03525 345 YAADEALYTVEAKSYEPNDYGLYNMAGNVSEWTNSSYDPSSYEYMSTMNPNVNDSENTRKVVRGGSWKDVAYF---LQVS 421 (449)
T ss_pred cccccCcccCCCCCcCCCCcceeccCCChHhhhcccccccccccccccCCCCCCCCCceEEEecCCCCCcccc---eeee
Confidence 33456667899999999999999999999999999998753 333445554432 245799999999998876 4999
Q ss_pred cccCCCCCCCCCCCCccccccCCCC
Q psy8678 322 ARSQNTPDSSAGNLGFRCAADKGPT 346 (394)
Q Consensus 322 ~r~~~~~~~~~~~iGFR~v~~~~~~ 346 (394)
.|....++.....||||||++....
T Consensus 422 ~R~~~~pd~~~~~IGFR~Vrd~~~~ 446 (449)
T TIGR03525 422 TRDYEYADSARSYIGFRTVQDYLGT 446 (449)
T ss_pred ecCCcCCCccCCceEEEEEeeccCc
Confidence 9999999999999999999987554
No 5
>PF03781 FGE-sulfatase: Sulfatase-modifying factor enzyme 1; InterPro: IPR005532 This domain is found in eukaryotic proteins [] required for post-translational sulphatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulphatase deficiency (MSD) [, , , ]. The protein product of the SUMF1 gene is FGE, formylglycine-generating enzyme, which is a sulphatase. Sulphatases are enzymes essential for degradation and remodelling of sulphate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulphatases []. FGE is localised to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesised sulphatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilised by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulphide bond is present in the active site of FGE. An oxidised cysteine residue, possibly cysteine sulphenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulphatases []. This domain is also found in a few methyltransferases and protein kinases.; PDB: 2Y3C_A 2Q17_B 1Y4J_B 1Y1E_X 2AFT_X 2HIB_X 2AII_X 1Z70_X 1Y1F_X 2HI8_X ....
Probab=100.00 E-value=1.5e-51 Score=389.13 Aligned_cols=246 Identities=44% Similarity=0.842 Sum_probs=145.1
Q ss_pred CCCcEEeCCeeeEccCCCCCCCCCCCCCceEEEccceEeeecccCHHHHHHHHHHcCCcchhhhcCCcccccCCccHHHH
Q psy8678 12 YKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAEKFGDTFVFEPLLSEEER 91 (394)
Q Consensus 12 ~~~mv~IpgG~f~mG~~~~~~~~~~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~~~~~~~~~~~~~~~~~~~~~~ 91 (394)
.++||+||+|+|.||+ ......+++.|.|+|+|++|+|++|||||+||++||+++++..... ...+.
T Consensus 2 ~~~~V~Ip~G~f~~G~-~~~~~~~~~~p~~~v~l~~f~i~~~eVT~~~y~~fl~~~~~~~~~~--~~~~~---------- 68 (260)
T PF03781_consen 2 APEMVLIPGGTFLMGS-QPDNGWDDENPPHTVTLSPFYIDKYEVTNAQYRAFLNDGGYQTSAT--PEFWS---------- 68 (260)
T ss_dssp -TTEEEE--EEEEES--S-STGGGTTBSSEEEEE-SEEEESS--BHHHHHHHHHHHT---HSS--CTTEE----------
T ss_pred CCceEEECCEEEEeCC-CCCCCCcCCCCceEEEECCEEEECEEeCHHHHHHhhhhcccccccc--cceee----------
Confidence 4789999999999999 4444567899999999999999999999999999999987764310 00000
Q ss_pred HhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCccccCCcCCc
Q psy8678 92 AKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDST 171 (394)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~~~~~~~~ 171 (394)
++ .. ..+..+......
T Consensus 69 --------------------------~~------------------~~--------------------~~~~~~~~~~~~ 84 (260)
T PF03781_consen 69 --------------------------PA------------------SG--------------------ANWRNPSGRYEP 84 (260)
T ss_dssp --------------------------EE------------------ET---------------------BTTBTTSTT-T
T ss_pred --------------------------cc------------------CC--------------------cccccccccccc
Confidence 00 00 000000000011
Q ss_pred cccccCCCcccCCHHHHHHHHHHcCC------CCCCHHHHHHHHhcCCCCccccCCCCCCCCCccccccccCC---CCCC
Q psy8678 172 IEHRMNHPVVHVSWNDAVAYCTWRGA------RLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGE---FPTN 242 (394)
Q Consensus 172 ~~~~~~~Pv~~Vsw~dA~~yc~wlg~------RLPTEaEWEyAArg~~~~~~ypwg~~~~~~~~~~an~~~~~---~~~~ 242 (394)
.....++||++|||+||.+||+|++. |||||+|||||||++...+.||||+...+.. +.+.+. ....
T Consensus 85 ~~~~~~~Pv~~Vsw~~A~ayc~wl~~~~g~~yRLPteaEWe~Aar~g~~~~~~~~g~~~~~~~----~~~~g~~~~~~~~ 160 (260)
T PF03781_consen 85 KPGPDNHPVVGVSWYDAQAYCNWLGKRTGEGYRLPTEAEWEYAARGGPDGRPYPWGDEFDPDA----NNWAGSLADYNNA 160 (260)
T ss_dssp STTGTTSB--S--HHHHHHHHHHCTHHTTSS-B---HHHHHHHHHTTSSSSSBTTBSSSSGGG----B---S-HHSTTTE
T ss_pred ccCCcchhcceeeHHHHHHHHHHhcccccccccCCCHHHHHHHhcccccccccccCCCCCccc----ccccccccccccc
Confidence 12357899999999999999999998 9999999999999988888999998866422 111110 0000
Q ss_pred CCC-CCCCCccccCcCCCCCcccccccccCHHHhccccccCCCCCCCCCCCCCCCCCCCeEEeCccccCC--ccccccce
Q psy8678 243 NTA-ADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLCN--EQYCYRHR 319 (394)
Q Consensus 243 ~~~-~~g~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d~y~~~~~~~~~~~~~~~~~g~~~v~rGGs~~~~--~~~~~~~r 319 (394)
... ......+.||+++++|+||||||+|||||||.|+|..+..............+..+|+|||||.+. ... .|
T Consensus 161 ~~~~~~~~~~~~pvg~~~~n~~Gl~Dm~GNV~EW~~d~~~~~~~~~~~~~~~~~~~~~~~v~rGGs~~~~~~~~~---~r 237 (260)
T PF03781_consen 161 YSNADSRSGETAPVGSFPPNPFGLYDMAGNVWEWTADWYSGYPPDPPDDNPNDDSDGGYRVVRGGSWASDPMPDS---CR 237 (260)
T ss_dssp E-TTTS-SS----TTSS-BSTTS-SSSSSSSEEEEEEE-SCHCCCS-CCS----SGGSSEEEES--TTSBTTCCC---CS
T ss_pred ccccCCCCccceeeeeccccccCcCCCCCCchheecccccCccCCccccccccccCCceEeeeCCccCCCcchhe---Ee
Confidence 011 112235899999999999999999999999999998322222333334445578999999999997 444 47
Q ss_pred eccc-cCCCCCCCCCCCCccccc
Q psy8678 320 CAAR-SQNTPDSSAGNLGFRCAA 341 (394)
Q Consensus 320 ~~~r-~~~~~~~~~~~iGFR~v~ 341 (394)
+..| ....+..+...+||||||
T Consensus 238 ~~~r~~~~~~~~~~~~vGFR~vR 260 (260)
T PF03781_consen 238 CAYRGSFYPPDQRSPNVGFRCVR 260 (260)
T ss_dssp TT-EEEEE-TT--BTTEEE--EE
T ss_pred eeeccCcCCCCCcCCCEEEEEEC
Confidence 8888 444788999999999996
No 6
>TIGR03440 unchr_TIGR03440 conserved hypothetical protein TIGR03440. The model TIGR03438 describes a family of uncharacteriaed putative methyltransferases in bacteria. The family described here is a set of proteins also restricted to bacteria, and located close to the member of TIGR03438.
Probab=100.00 E-value=1.5e-48 Score=386.91 Aligned_cols=235 Identities=31% Similarity=0.483 Sum_probs=173.8
Q ss_pred CCCCcEEeCCeeeEccCCCCCCCCCCCCCceEEEccceEeeecccCHHHHHHHHHHcCCcchhhhcCCcccccCCccHHH
Q psy8678 11 RYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAEKFGDTFVFEPLLSEEE 90 (394)
Q Consensus 11 ~~~~mv~IpgG~f~mG~~~~~~~~~~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~~~~~~~~~~~~~~~~~~~~~ 90 (394)
...+||.||||+|.||++.+.+.+|+|.|.|+|.|++|+|+++||||+||++|++++||+.++-...+++
T Consensus 166 ~~~~~v~ip~G~f~mG~~~~~f~~DnE~P~h~V~l~~F~i~~~~VTn~ey~~Fv~~gGy~~~~~w~~~gw---------- 235 (406)
T TIGR03440 166 PPLRWVAFPGGEFEIGSDADGFAFDNERPRHRVLVPPFEIDARPVTNGEYLEFIEDGGYRRPELWLSDGW---------- 235 (406)
T ss_pred CCCCeEEECCeEEEeCCCCCCCcccCCCCceeEEeCCeEEECccCcHHHHHHHHHhcCCCCcccccccch----------
Confidence 3569999999999999987778899999999999999999999999999999999999986532111111
Q ss_pred HHhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCccc--cCCc
Q psy8678 91 RAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLH--PEGI 168 (394)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~--~~~~ 168 (394)
..+.. .....|.. |.. .. ..|.. ..+.
T Consensus 236 -~~~~~----------------~~~~~P~~------------w~~----~~------------------~~w~~~~~~g~ 264 (406)
T TIGR03440 236 -AWVQA----------------EGWQAPLY------------WRR----DD------------------GTWWVFTLGGL 264 (406)
T ss_pred -hhhhh----------------hcccCCcc------------ccc----cC------------------CcceeeccCCC
Confidence 11110 00011111 100 00 01110 0000
Q ss_pred CCccccccCCCcccCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccCCCCCCCCCccccccccCCCCCCCCCCCC
Q psy8678 169 DSTIEHRMNHPVVHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADG 248 (394)
Q Consensus 169 ~~~~~~~~~~Pv~~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypwg~~~~~~~~~~an~~~~~~~~~~~~~~g 248 (394)
.....++||++|||+||.+||+|+|+|||||+||||||+++... + |+ .+
T Consensus 265 ---~p~~~~~PV~~VS~~eA~Ay~~W~g~RLPTEaEWE~AAr~g~~~-----~-----------~~-------~~----- 313 (406)
T TIGR03440 265 ---RPLDPDAPVCHVSYYEADAYARWAGARLPTEAEWEKAARWGDAP-----P-----------NF-------AE----- 313 (406)
T ss_pred ---CCCCCCCCccCCCHHHHHHHHHHhCCCCCCHHHHHHHHhcCCCC-----C-----------Cc-------cc-----
Confidence 01236899999999999999999999999999999999964321 0 11 00
Q ss_pred CCccccCcCCCCCcccccccccCHHHhccccccCCCCCCC----CCCCCCCCCCCCeEEeCccccCCccccccceecccc
Q psy8678 249 YLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAP----SYNPKGPTTGTDKVKKGGSYLCNEQYCYRHRCAARS 324 (394)
Q Consensus 249 ~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d~y~~~~~~~~----~~~~~~~~~g~~~v~rGGs~~~~~~~~~~~r~~~r~ 324 (394)
....+||+++++|++|||||.|||||||+|+|.++....+ ..++.+++.++++|+|||||.+.+.. .|++.|+
T Consensus 314 ~~~~~PV~~~~~~~~Gl~dm~GNVWEWt~d~y~pypgf~~~~g~~~ey~~~~~~~~~VlRGGSw~t~~~~---~R~~~Rn 390 (406)
T TIGR03440 314 ANLGAPVGAYPAGAQGLGQLFGDVWEWTASPYEPYPGFRPPPGAYGEYNGKFMDGQMVLRGGSCATPPRH---LRPSYRN 390 (406)
T ss_pred cCCCCcCCCcCCCCcccccCcCCeeeecccCCCCCCCCCCCCCccccCCCCcCCCeeEeeCCCCCCCCcc---cCccccC
Confidence 0134899999999999999999999999999998765432 23344555678999999999998876 4999999
Q ss_pred CCCCCCCCCCCCcccc
Q psy8678 325 QNTPDSSAGNLGFRCA 340 (394)
Q Consensus 325 ~~~~~~~~~~iGFR~v 340 (394)
...|+.+...+|||||
T Consensus 391 ~~~p~~r~~~~GFR~A 406 (406)
T TIGR03440 391 FFYPHRRWQFSGFRLA 406 (406)
T ss_pred CCCCCccCCCceeeeC
Confidence 9999999999999997
No 7
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=100.00 E-value=1.5e-48 Score=403.99 Aligned_cols=243 Identities=26% Similarity=0.410 Sum_probs=178.6
Q ss_pred CCCCcEEeCCe-eeEccCCCCCCCCCCCCCceEEEcc-ceEeeecccCHHHHHHHHHHcCCcchhhhcCCcccccCCccH
Q psy8678 11 RYKDMVLLPGD-TFRMGTNKPILIKDGEFPSRNVTLD-AFYLDQHEVSNTQFQEFVSATGYVTEAEKFGDTFVFEPLLSE 88 (394)
Q Consensus 11 ~~~~mv~IpgG-~f~mG~~~~~~~~~~~~p~~~v~v~-~F~i~~~EVTn~~y~~fl~~~g~~~~~~~~~~~~~~~~~~~~ 88 (394)
..++||+|||| +|+||+++.. ..++|.|.|+|+|. +|||++|||||+||++|+.+.+.....
T Consensus 35 ~~~gMV~IpgG~~F~MGsd~~~-a~ddE~P~H~VtL~~~FyI~k~EVTnaqF~aFv~a~~g~~~~--------------- 98 (912)
T TIGR02171 35 SVDGFVYVKGKKSTTLGTDDIS-AKSNESPKMTVQLTYDFYIGRHEVTCGEFNDLMKGETGFKVP--------------- 98 (912)
T ss_pred CcCCeEEeCCCCeEEcCCCCCc-cCccCCCceEEEecCCeEEECeeecHHHHHHHHhcCCCCCCC---------------
Confidence 35789999999 9999997643 56789999999997 999999999999999999875211000
Q ss_pred HHHHhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCccccCCc
Q psy8678 89 EERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGI 168 (394)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~~~~~ 168 (394)
....++||++|||+||++||+|++.+......|.+ ..++| ++.++
T Consensus 99 -----------------------~~~~d~PV~~VSW~DA~aYcnwLSkktGl~p~Y~~-----------tga~~-~p~g~ 143 (912)
T TIGR02171 99 -----------------------CKEDKLPATNVTFYDAVLYANALSKSEGLDTVYTY-----------TSANF-DASGH 143 (912)
T ss_pred -----------------------cCCCCCCccCCCHHHHHHHHHhhhhhcCCCceeec-----------ccccc-ccccc
Confidence 01247899999999999999999764333222222 12445 56666
Q ss_pred CCccccccCCCcccCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccCCCCCCCCCccccccccCCCCCCCCCCCC
Q psy8678 169 DSTIEHRMNHPVVHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADG 248 (394)
Q Consensus 169 ~~~~~~~~~~Pv~~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypwg~~~~~~~~~~an~~~~~~~~~~~~~~g 248 (394)
...+.+...+|+. .||||||||||||||||+... .++|+.. +.
T Consensus 144 c~~l~g~~~~p~~-------------~GYRLPTEAEWEYAARGG~~~-~~~W~~~-------------------nS---- 186 (912)
T TIGR02171 144 CVNLEGLAFHPEV-------------KGYRLPTEAEWIYVASQSWDP-EKSWNSD-------------------NS---- 186 (912)
T ss_pred ccccccccccccc-------------ccccCCCHHHHHHHHhcCCCC-ccccccc-------------------cc----
Confidence 6555555555554 399999999999999986432 2344321 00
Q ss_pred CCccccCcCCCCCcccccccccCHHHhccccccCCCCCCCCCCCCCCCC---CCCeEEeCccccCCccccccceeccccC
Q psy8678 249 YLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTT---GTDKVKKGGSYLCNEQYCYRHRCAARSQ 325 (394)
Q Consensus 249 ~~~~~pVg~~~~n~~GlyDM~GNV~EW~~d~y~~~~~~~~~~~~~~~~~---g~~~v~rGGs~~~~~~~~~~~r~~~r~~ 325 (394)
...++||+++++|+||||||+|||||||.|+|.++. ..+..++.+... ...+|+|||||.+.+..| |++.|..
T Consensus 187 ~~~t~PVGsfppN~fGLYDM~GNVWEWc~DwY~~y~-~~~~~np~G~~d~~~~~~RVlRGGSW~s~p~~c---R~a~R~~ 262 (912)
T TIGR02171 187 SSEAHEVCTSPDNPGNVCDMAGNVLEWVNDWLASFK-DTTLTNYVGSSDPGSLGERVVKGGSYRNSPSAI---NLYTRGD 262 (912)
T ss_pred CCccccccccCCCCcCccccCCChHHhhcccccccc-cccccCCCCCCCCCCCceEEEecCCCCCChhhc---ceeeccc
Confidence 013689999999999999999999999999998743 233345544332 357899999999998876 7777765
Q ss_pred CC---CCCCCCCCCccccccCCC
Q psy8678 326 NT---PDSSAGNLGFRCAADKGP 345 (394)
Q Consensus 326 ~~---~~~~~~~iGFR~v~~~~~ 345 (394)
.. ++.+..++|||||++..|
T Consensus 263 ~~p~~pdsr~~~iGFRLAr~~iP 285 (912)
T TIGR02171 263 VYPVTSSTKGDYVGFRLALGAIP 285 (912)
T ss_pred cCCCCcccccCceEEEEEEecCC
Confidence 43 456778999999998744
No 8
>COG1262 Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.7e-46 Score=360.03 Aligned_cols=245 Identities=44% Similarity=0.740 Sum_probs=177.7
Q ss_pred CCCCCCcEEeCCeeeEccCCCCCC-CCC-CCCCceEEEccceEeeecccCHHHHHHHHHHcCCcchhhhcCCcccccCCc
Q psy8678 9 VERYKDMVLLPGDTFRMGTNKPIL-IKD-GEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAEKFGDTFVFEPLL 86 (394)
Q Consensus 9 ~~~~~~mv~IpgG~f~mG~~~~~~-~~~-~~~p~~~v~v~~F~i~~~EVTn~~y~~fl~~~g~~~~~~~~~~~~~~~~~~ 86 (394)
....++||.||+|+|.||+.+.+. ..+ +|.|.|+|+|++|+|++|||||+||++|++++++....+..+.
T Consensus 47 ~~~~~~~v~ipgg~f~~g~~~~e~~~~~~~e~P~h~v~v~~F~i~k~pVT~aq~~~fv~~~g~~~~~~~~~~-------- 118 (314)
T COG1262 47 LVIAPEMVLIPGGEFTMGSPDDEWERFDRNEAPVHKVTVPPFEIDKYPVTNAQFARFVEAGGYTTAWEEDGE-------- 118 (314)
T ss_pred cccCceEEEECCceeecCCCcccccccccccCCceeeEecceeeeCceEcHHHHHHHHHhcCcccccccccc--------
Confidence 346789999999999999544333 334 7999999999999999999999999999999987641000000
Q ss_pred cHHHHHhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCCccCccCCCCCccccC
Q psy8678 87 SEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPE 166 (394)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~w~~~~ 166 (394)
|+ .| ..|..+.
T Consensus 119 -------------------------------~~------------------~p--------------------~~w~~~~ 129 (314)
T COG1262 119 -------------------------------PV------------------YP--------------------SYWKGEG 129 (314)
T ss_pred -------------------------------cC------------------Cc--------------------ccccCCC
Confidence 00 00 1122221
Q ss_pred CcCCccccccCCCcccCCHHHHHHHHHHcC-----CCCCCHHHHHHHHhcCCCCccccCCCCCCCCCccccccccCCCCC
Q psy8678 167 GIDSTIEHRMNHPVVHVSWNDAVAYCTWRG-----ARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPT 241 (394)
Q Consensus 167 ~~~~~~~~~~~~Pv~~Vsw~dA~~yc~wlg-----~RLPTEaEWEyAArg~~~~~~ypwg~~~~~~~~~~an~~~~~~~~ 241 (394)
+. ...++||++|||+||.+||.|+| +|||||+||||||+++.....|+||+...+....+.+-|.-
T Consensus 130 ~~-----~~~~~Pv~~Vs~~da~aya~~lg~~tg~~rLPTEaEWE~Aar~g~~~~~~~~gd~~~~~~~~~~~~~~~---- 200 (314)
T COG1262 130 GR-----LRLEHPVVGVSWYDAQAYAAWLGVKTGEYRLPTEAEWEYAARAGTTTDSYPWGDELEPGLNAYAGTWEY---- 200 (314)
T ss_pred Cc-----ccccCCeeeccHHHHHHHHHHhccccccccCCcHHHHHHHhccCCCCCccccCccccchhhhhccchhh----
Confidence 11 24679999999999999999999 99999999999999987765599999876544333322200
Q ss_pred CCCCCCC---CCccccCcCCCCC-cccccccccCHHHhcccccc----CCCCCCCCC------CCCC-CCCCCCeEEeCc
Q psy8678 242 NNTAADG---YLSTAPVMSYKEN-KFGLYNMVGNVWEWTADWWN----VHHHPAPSY------NPKG-PTTGTDKVKKGG 306 (394)
Q Consensus 242 ~~~~~~g---~~~~~pVg~~~~n-~~GlyDM~GNV~EW~~d~y~----~~~~~~~~~------~~~~-~~~g~~~v~rGG 306 (394)
.....+ ...++||++++++ .+|||||+|||||||.|++. ..+...+.+ ...+ ...+..+|+|||
T Consensus 201 -~~~~~~~~~~~~~~pvg~~~~~~~~GlyDm~GnVWEWt~d~~~~~~~~~~~~~~~~g~a~~~~~~~~~~~~~~~v~rgg 279 (314)
T COG1262 201 -LRAAAGWARERETAPVGAFPPNAAYGLYDMHGNVWEWTADWEKEWHYDNYGPAPSDGSAWYDGNSGSKFFGSLRVVRGG 279 (314)
T ss_pred -hccccccccccccCCccccCCccccChhhcccceeeeecccccccccccccCcccCCceeeccCCccccceeeeeeecc
Confidence 011122 2378999999766 99999999999999999875 222221111 1111 234467899999
Q ss_pred cccCCccccccceeccccCCCCCCCCCCCCccccccC
Q psy8678 307 SYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADK 343 (394)
Q Consensus 307 s~~~~~~~~~~~r~~~r~~~~~~~~~~~iGFR~v~~~ 343 (394)
||.+.... .|++.|....++.+...+||||++.+
T Consensus 280 sw~~~~~~---~r~~~R~~~~~~~~~~~~GfR~~~~~ 313 (314)
T COG1262 280 SWASYPGV---LRPAFRNFLVPDYRQAHVGFRCARLI 313 (314)
T ss_pred cccCcccc---cCHhhhCccCcchhcceeeEEEEeec
Confidence 99996665 59999999999999999999999875
No 9
>TIGR03525 GldK gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. There is a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.10 E-value=4.1e-11 Score=118.85 Aligned_cols=74 Identities=45% Similarity=0.851 Sum_probs=58.0
Q ss_pred cCCcccccCC--ccHHHHHhhhhhccccccccCCcccccccCCCceeeecHHHHHHhhhhhcC-----------------
Q psy8678 76 FGDTFVFEPL--LSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGA----------------- 136 (394)
Q Consensus 76 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~PV~~vsW~~A~~y~~w~~~----------------- 136 (394)
.|++.||.+. ++.+.....++++|+. +.++|||+|||+||.+||+|++.
T Consensus 232 ~pdt~vw~~~~~~~~n~~~~~~y~~h~~------------y~d~PVV~VSW~dA~aFC~Wls~~~n~~~~~~g~~t~~~y 299 (449)
T TIGR03525 232 YPDTTVWIKDFNYSYNEPMHNDYFWHQA------------YDDYPVVGVTWKQARAFCNWRTKYKNDFRKKKGPANVNTF 299 (449)
T ss_pred cCCcceEecccccccCchhhhhhccCcc------------cCCCCccCCCHHHHHHHHHHHhccccccccccccccCccc
Confidence 5777777766 4444554444444332 57999999999999999999985
Q ss_pred CCcchhhhhhcccCCccCccCCCCC
Q psy8678 137 RLPTEAEWEYGCRGGLENRLFPWGS 161 (394)
Q Consensus 137 ~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (394)
|||+++||||||++|.....|+|++
T Consensus 300 RLPTEAEWEYAARGG~~~~~YPWG~ 324 (449)
T TIGR03525 300 RLPTEAEWEYAARGGLEGATYPWGG 324 (449)
T ss_pred cCCCHHHHHHHHhcCCCCCccCCCC
Confidence 8999999999999998888788743
No 10
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=98.96 E-value=1.4e-09 Score=114.71 Aligned_cols=43 Identities=28% Similarity=0.357 Sum_probs=36.7
Q ss_pred CCcccccCCccccCCCccccccccccCCCCCC---CCCCCcceEEEeec
Q psy8678 348 GTDKVKKGGSYLCNEQYCYRHRCAARSQNTPD---SSAGNLGFRCAADV 393 (394)
Q Consensus 348 ~~~~~~~ggsw~~~~~~~~~~~~~~r~~~~~~---~~~~~~gfr~~~~~ 393 (394)
...||+|||||.+.+..| |++.|....|. .+..+||||||++.
T Consensus 238 ~~~RVlRGGSW~s~p~~c---R~a~R~~~~p~~pdsr~~~iGFRLAr~~ 283 (912)
T TIGR02171 238 LGERVVKGGSYRNSPSAI---NLYTRGDVYPVTSSTKGDYVGFRLALGA 283 (912)
T ss_pred CceEEEecCCCCCChhhc---ceeeccccCCCCcccccCceEEEEEEec
Confidence 356899999999999999 99999877654 57799999999874
No 11
>TIGR03529 GldK_short gliding motility-associated lipoprotein GldK. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldK is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldK abolish the gliding phenotype. GldK is homologous to GldJ. This model represents a GldK homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture than that found in Flavobacterium johnsoniae and related species (represented by (TIGR03525). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.67 E-value=1.1e-08 Score=99.99 Aligned_cols=48 Identities=50% Similarity=1.117 Sum_probs=43.1
Q ss_pred cCCCceeeecHHHHHHhhhhhc-----------------CCCcchhhhhhcccCCccCccCCCCC
Q psy8678 114 RMHHPVVHISWNDAVAYCTWRG-----------------ARLPTEAEWEYGCRGGLENRLFPWGS 161 (394)
Q Consensus 114 ~~~~PV~~vsW~~A~~y~~w~~-----------------~~~~~~~~~~~~~~~g~~~~~~~~~~ 161 (394)
..++||++|||+||.+||+|++ .|||+++||||||++|.....|+|++
T Consensus 155 ~~~~PVv~VSW~dA~ayc~Wls~~~~~~~~~~~~~~~~~~RLPTEAEWEyAARgg~~~~~ypwG~ 219 (344)
T TIGR03529 155 FDNYPVVGVDWNAAKQFCEWRTYHMNAYRNEESQYDMPRFRLPSEAEWEYAARGGRDMAKYPWGG 219 (344)
T ss_pred ccCCCcccCCHHHHHHHHHHHhhhccccccccccccCCcccCcCHHHHHHHHhCCCCCCcCCCCC
Confidence 3589999999999999999996 69999999999999988877788754
No 12
>PF03781 FGE-sulfatase: Sulfatase-modifying factor enzyme 1; InterPro: IPR005532 This domain is found in eukaryotic proteins [] required for post-translational sulphatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulphatase deficiency (MSD) [, , , ]. The protein product of the SUMF1 gene is FGE, formylglycine-generating enzyme, which is a sulphatase. Sulphatases are enzymes essential for degradation and remodelling of sulphate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulphatases []. FGE is localised to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesised sulphatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilised by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulphide bond is present in the active site of FGE. An oxidised cysteine residue, possibly cysteine sulphenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulphatases []. This domain is also found in a few methyltransferases and protein kinases.; PDB: 2Y3C_A 2Q17_B 1Y4J_B 1Y1E_X 2AFT_X 2HIB_X 2AII_X 1Z70_X 1Y1F_X 2HI8_X ....
Probab=98.42 E-value=1.2e-07 Score=89.55 Aligned_cols=52 Identities=58% Similarity=1.199 Sum_probs=38.4
Q ss_pred ccCCCceeeecHHHHHHhhhhhcC------CCcchhhhhhcccCCccCccCCCCCccc
Q psy8678 113 HRMHHPVVHISWNDAVAYCTWRGA------RLPTEAEWEYGCRGGLENRLFPWGSWLH 164 (394)
Q Consensus 113 ~~~~~PV~~vsW~~A~~y~~w~~~------~~~~~~~~~~~~~~g~~~~~~~~~~w~~ 164 (394)
...++||++|||++|.+||+|++. |||+++||||||++|.....++|.+-..
T Consensus 87 ~~~~~Pv~~Vsw~~A~ayc~wl~~~~g~~yRLPteaEWe~Aar~g~~~~~~~~g~~~~ 144 (260)
T PF03781_consen 87 GPDNHPVVGVSWYDAQAYCNWLGKRTGEGYRLPTEAEWEYAARGGPDGRPYPWGDEFD 144 (260)
T ss_dssp TGTTSB--S--HHHHHHHHHHCTHHTTSS-B---HHHHHHHHHTTSSSSSBTTBSSSS
T ss_pred CCcchhcceeeHHHHHHHHHHhcccccccccCCCHHHHHHHhcccccccccccCCCCC
Confidence 356899999999999999999999 9999999999999988777777755443
No 13
>PHA00653 mtd major tropism determinant
Probab=98.28 E-value=1.7e-06 Score=80.89 Aligned_cols=137 Identities=23% Similarity=0.341 Sum_probs=82.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccCCCCCCCCCccccccccCCCCCCCCCCCCCCccccCcCCCCC
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTAPVMSYKEN 261 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypwg~~~~~~~~~~an~~~~~~~~~~~~~~g~~~~~pVg~~~~n 261 (394)
..+|+.+.+-....|+|||+-+||.-||.|..+...- ++. .| ....+.|...+..+ .-.-+
T Consensus 235 ~~~WY~~~e~m~~~GKrLp~y~EF~~~afGS~egt~~--~~t----------~~------sat~~~gr~atg~~-~~~vS 295 (381)
T PHA00653 235 DGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSS--GGT----------DV------PTTGVNGTGATSAW-NIFTS 295 (381)
T ss_pred chhHHHHHHHHHHhccCCCcHHHHHHHHhCCCcccCC--CCC----------Cc------ccccccccccchhH-hhhhh
Confidence 3679999988888899999999999999986543210 000 01 00111111111111 11236
Q ss_pred cccccccccCHHHhccccccCCCCCCCCCCCCCC---CCCCCeEEeCccccCCccccccceeccccC---CCCCCCCCCC
Q psy8678 262 KFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGP---TTGTDKVKKGGSYLCNEQYCYRHRCAARSQ---NTPDSSAGNL 335 (394)
Q Consensus 262 ~~GlyDM~GNV~EW~~d~y~~~~~~~~~~~~~~~---~~g~~~v~rGGs~~~~~~~~~~~r~~~r~~---~~~~~~~~~i 335 (394)
.+|+.|..||||||..+.........-.-+..+. +..-..++-||+|.... +|..|.. ..|.....++
T Consensus 296 ~~gv~d~~G~vW~W~~e~~~~~~aa~y~an~~~~G~~yq~~~a~l~GG~W~~g~------~cGsRa~~~~~~Pw~v~aN~ 369 (381)
T PHA00653 296 KWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGSWNYTS------LSGSRAAYWYSGPSNSFANI 369 (381)
T ss_pred hcchhhhcchHHHHHHHhcCCcccceeecccCCcchHhhchHHHhhCCcccccc------ccccceeceecCcccccccc
Confidence 8999999999999998865332111100011110 11123567899998764 3444443 5777888999
Q ss_pred CccccccC
Q psy8678 336 GFRCAADK 343 (394)
Q Consensus 336 GFR~v~~~ 343 (394)
|-|||++.
T Consensus 370 GaRgvCD~ 377 (381)
T PHA00653 370 GARGVCDH 377 (381)
T ss_pred ccceechh
Confidence 99999874
No 14
>TIGR03440 unchr_TIGR03440 conserved hypothetical protein TIGR03440. The model TIGR03438 describes a family of uncharacteriaed putative methyltransferases in bacteria. The family described here is a set of proteins also restricted to bacteria, and located close to the member of TIGR03438.
Probab=98.14 E-value=1.1e-06 Score=87.97 Aligned_cols=38 Identities=55% Similarity=0.961 Sum_probs=35.7
Q ss_pred cCCCceeeecHHHHHHhhhhhcCCCcchhhhhhcccCC
Q psy8678 114 RMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGG 151 (394)
Q Consensus 114 ~~~~PV~~vsW~~A~~y~~w~~~~~~~~~~~~~~~~~g 151 (394)
..++||++|||+||.+||.|.+.|||+++|||+||+.|
T Consensus 268 ~~~~PV~~VS~~eA~Ay~~W~g~RLPTEaEWE~AAr~g 305 (406)
T TIGR03440 268 DPDAPVCHVSYYEADAYARWAGARLPTEAEWEKAARWG 305 (406)
T ss_pred CCCCCccCCCHHHHHHHHHHhCCCCCCHHHHHHHHhcC
Confidence 46899999999999999999999999999999999864
No 15
>COG1262 Uncharacterized conserved protein [Function unknown]
Probab=98.03 E-value=3.7e-06 Score=81.35 Aligned_cols=46 Identities=59% Similarity=1.221 Sum_probs=40.3
Q ss_pred cCCCceeeecHHHHHHhhhhhc-----CCCcchhhhhhcccCCccCccCCC
Q psy8678 114 RMHHPVVHISWNDAVAYCTWRG-----ARLPTEAEWEYGCRGGLENRLFPW 159 (394)
Q Consensus 114 ~~~~PV~~vsW~~A~~y~~w~~-----~~~~~~~~~~~~~~~g~~~~~~~~ 159 (394)
+.++||++|||++|.+||.|++ .|||++++|||||++|....-|++
T Consensus 133 ~~~~Pv~~Vs~~da~aya~~lg~~tg~~rLPTEaEWE~Aar~g~~~~~~~~ 183 (314)
T COG1262 133 RLEHPVVGVSWYDAQAYAAWLGVKTGEYRLPTEAEWEYAARAGTTTDSYPW 183 (314)
T ss_pred cccCCeeeccHHHHHHHHHHhccccccccCCcHHHHHHHhccCCCCCcccc
Confidence 4579999999999999999999 999999999999999876543433
No 16
>TIGR03524 GldJ gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.29 E-value=0.00015 Score=73.63 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=40.0
Q ss_pred CCCCeEEeCccccCCccccccceeccccCCCCCCCCCCCCccccccCCC
Q psy8678 297 TGTDKVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGP 345 (394)
Q Consensus 297 ~g~~~v~rGGs~~~~~~~~~~~r~~~r~~~~~~~~~~~iGFR~v~~~~~ 345 (394)
....||+|||||.+.+..| |++.|....++.....||||||++...
T Consensus 503 ~d~~RVlRGGSW~~~~~~~---r~A~R~~~~~~~~~~~iGFR~a~~~~g 548 (559)
T TIGR03524 503 DDRVRVYKGGSWRDREYWL---DPAQRRYLPQYMATDYIGFRCAMSRVG 548 (559)
T ss_pred cCCeEEeecCCcCCCcccc---chhhccCCCccccccceeEEEEecccC
Confidence 3468999999999888765 999999999999999999999998753
No 17
>TIGR03530 GldJ_short gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. This model represents the GldJ homolog in Cytophaga hutchinsonii and several other species which is of shorter architecture than that found in Flavobacterium johnsoniae and is represented by a separate model (TIGR03524). Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=97.21 E-value=0.00023 Score=70.65 Aligned_cols=43 Identities=30% Similarity=0.413 Sum_probs=37.6
Q ss_pred CCCeEEeCccccCCccccccceeccccCCCCCCCCCCCCccccccC
Q psy8678 298 GTDKVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADK 343 (394)
Q Consensus 298 g~~~v~rGGs~~~~~~~~~~~r~~~r~~~~~~~~~~~iGFR~v~~~ 343 (394)
+..||+|||||.+.+..+ |++.|....++.+..+||||||+..
T Consensus 356 ~~~RVlRGGSW~~~~~~~---Rsa~R~~~~p~~~~~~iGFR~a~~~ 398 (402)
T TIGR03530 356 DEFRVYKGGSWKDVAYWL---SPGTRRFLAEDSATAAIGFRCAMIQ 398 (402)
T ss_pred CceEEEeCCCCCCcccce---eeeecCCCCCCccCCceeEEEEEec
Confidence 357999999999887764 9999999999999999999999764
No 18
>PF07603 DUF1566: Protein of unknown function (DUF1566); InterPro: IPR011460 These proteins of unknown function are found in Leptospira interrogans and in several gamma proteobacteria.
Probab=75.50 E-value=2.6 Score=34.52 Aligned_cols=30 Identities=37% Similarity=0.581 Sum_probs=24.8
Q ss_pred cccCCHHHHHHHHHHcC------CCCCCHHHHHHHH
Q psy8678 180 VVHVSWNDAVAYCTWRG------ARLPTEAEWEYGC 209 (394)
Q Consensus 180 v~~Vsw~dA~~yc~wlg------~RLPTEaEWEyAA 209 (394)
....+|.+|+++|+-+. -||||..|-+.-.
T Consensus 28 ~~~~~~~~A~~~c~~l~~~G~~dWRLPt~~EL~~L~ 63 (124)
T PF07603_consen 28 PTYMNWDDAIAYCNNLNLGGYTDWRLPTIEELQSLY 63 (124)
T ss_pred CccCcHHHHHHHHHHHhcCCCCCccCCCHHHHHHHH
Confidence 46689999999998873 4999999976654
No 19
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=56.90 E-value=8.8 Score=33.02 Aligned_cols=20 Identities=35% Similarity=0.712 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHcCCCCCCH
Q psy8678 183 VSWNDAVAYCTWRGARLPTE 202 (394)
Q Consensus 183 Vsw~dA~~yc~wlg~RLPTE 202 (394)
.+|+||.+-|.-+|++||..
T Consensus 93 ~tf~eAn~~C~~~g~~LPs~ 112 (161)
T PHA02673 93 DTWTNANERCKELGQRLPSP 112 (161)
T ss_pred CcHHHHHHHHHhcCCcCCCC
Confidence 69999999999999999994
No 20
>PF00193 Xlink: Extracellular link domain; InterPro: IPR000538 The link domain [] is a hyaluronan(HA)-binding region found in proteins of vertebrates that are involved in the assembly of extracellular matrix, cell adhesion, and migration. The structure has been shown [] to consist of two alpha helices and two antiparallel beta sheets arranged around a large hydrophobic core similar to that of C-type lectin. This domain contains four conserved cysteines involved in two disulphide bonds. The link domain has also been termed HABM [] (HA binding module) and PTR [] (proteoglycan tandem repeat). Proteins with such a domain include the proteoglycans aggrecan, brevican, neurocan and versican, which are expressed in the CNS; the cartilage link protein (LP), a proteoglycan that together with HA and aggrecan forms multimolecular aggregates; Tumour necrosis factor-inducible protein TSG-6, which may be involved in cell-cell and cell-matrix interactions during inflammation and tumourgenesis; and CD44 antigen, the main cell surface receptor for HA.; GO: 0005540 hyaluronic acid binding, 0007155 cell adhesion; PDB: 1O7B_T 2PF5_C 1O7C_T 2JCQ_A 2JCR_A 2JCP_A 1UUH_B 1POZ_A 2I83_A.
Probab=44.90 E-value=25 Score=27.59 Aligned_cols=39 Identities=26% Similarity=0.491 Sum_probs=27.4
Q ss_pred cCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
.+++.+|.+.|..+|.+|-|-.|-+.|-+.+-+.=.+-|
T Consensus 13 ~l~f~eA~~~C~~~ga~LAs~~qL~~A~~~G~~~C~~GW 51 (92)
T PF00193_consen 13 KLTFTEAQQACRALGARLASPEQLEAAWKAGFETCRAGW 51 (92)
T ss_dssp SB-HHHHHHHHHHTTCBE--HHHHHHHHHTT---SS-EE
T ss_pred cCcHHHHHHHHHHcCCeeCCHHHHHHHHHhhhhHhHHHh
Confidence 588999999999999999999999998887655433433
No 21
>PHA00653 mtd major tropism determinant
Probab=41.07 E-value=15 Score=35.34 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=30.0
Q ss_pred CcccccCCccccCCCccccccccccC---CCCCCCCCCCcceEEEeec
Q psy8678 349 TDKVKKGGSYLCNEQYCYRHRCAARS---QNTPDSSAGNLGFRCAADV 393 (394)
Q Consensus 349 ~~~~~~ggsw~~~~~~~~~~~~~~r~---~~~~~~~~~~~gfr~~~~~ 393 (394)
..+++.||+|.+ .. +|+.|. ...|-..+.+||-|+||+.
T Consensus 336 ~~a~l~GG~W~~---g~---~cGsRa~~~~~~Pw~v~aN~GaRgvCD~ 377 (381)
T PHA00653 336 PAAALFGGSWNY---TS---LSGSRAAYWYSGPSNSFANIGARGVCDH 377 (381)
T ss_pred hHHHhhCCcccc---cc---ccccceeceecCccccccccccceechh
Confidence 347899999985 33 677764 3467779999999999973
No 22
>cd03518 Link_domain_HAPLN_module_1 Link_domain_HAPLN_module_1; this link domain is found in the first link module of proteins similar to the vertebrate HAPLN (hyaluronan/HA and proteoglycan binding link) protein family which includes cartilage link protein. The link domain is a HA-binding domain. HAPLNs contain two contiguous link modules. Both link modules of cartilage link protein are involved in interaction with HA. In cartilage, a chondroitin sulfate proteoglycan core protein (CSPG) aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates with other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HAPLN gene family are physically linked adjacent to CSPG genes.
Probab=38.68 E-value=56 Score=25.79 Aligned_cols=40 Identities=18% Similarity=0.264 Sum_probs=32.7
Q ss_pred ccCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
-.+++.+|++.|.-.|..|.|-++-+.|-+.|.+.-.+-|
T Consensus 12 Y~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~~GW 51 (95)
T cd03518 12 YNLNFHEAQQACEEQDATLASFEQLYQAWTEGLDWCNAGW 51 (95)
T ss_pred cccCHHHHHHHHHHcCCeeCCHHHHHHHHHcCccccCccc
Confidence 3488999999999999999999999988887655444444
No 23
>cd03601 CLECT_TC14_like C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CLECT_TC14_like: C-type lectin-like domain (CTLD) of the type found in lectins TC14, TC14-2, TC14-3, and TC14-4 from the budding tunicate Polyandrocarpa misakiensis and PfG6 from the Acorn worm. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TC14 is homodimeric. The CTLD of TC14 binds D-galactose and D-fucose. TC14 is expressed constitutively by multipotent epithelial and mesenchymal cells and plays in role during budding, in inducing the aggregation of undifferentiated mesenchymal cells to give rise to epithelial forming tissue. TC14-2 and TC14-3 shows calcium-dependent galactose binding activity. TC14-3 is a cytostatic factor which blocks cell growth and dedifferentiation of the atrial epithelium during asexual reproducti
Probab=34.81 E-value=23 Score=28.63 Aligned_cols=19 Identities=37% Similarity=0.714 Sum_probs=16.9
Q ss_pred cCCHHHHHHHHHHcCCCCC
Q psy8678 182 HVSWNDAVAYCTWRGARLP 200 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLP 200 (394)
.++|.+|..+|+.+|.+|-
T Consensus 9 ~~~w~~A~~~C~~~G~~La 27 (119)
T cd03601 9 TMNYAKAGAFCRSRGMRLA 27 (119)
T ss_pred cCCHHHHHHHHHhcCCEEe
Confidence 4899999999999998775
No 24
>cd03520 Link_domain_CSPGs_modules_2_4 Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. Aggrecan in addition contains a second globular domain (G2) having link modules 3 and 4 which lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggregan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and
Probab=34.15 E-value=72 Score=25.26 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=31.9
Q ss_pred cCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
.+++.+|++.|.-+|..|.|-+|-+.|-+.|.+.=.+-|
T Consensus 10 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~~GW 48 (96)
T cd03520 10 KFTFQEARAECRSLGAVLATTGQLYAAWRQGLDQCDPGW 48 (96)
T ss_pred CcCHHHHHHHHHHcCCEeCCHHHHHHHHHhccccccCcc
Confidence 589999999999999999999999888876654433333
No 25
>cd03515 Link_domain_TSG_6_like This is the extracellular link domain of the type found in human TSG-6. The link domain is a hyaluronan (HA)-binding domain. TSG-6 is the protein product of tumor necrosis factor-stimulated gene-6. TSG-6 is up-regulated in inflammatory lesions and in the ovary during ovulation. It has a strong anti-inflammatory and chondroprotective effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. Also included in this group are the stabilins: stabilin-1 (FEEL-1, CLEVER-1) and stabilin-2 (FEEL-2). Stabilin-2 functions as the major liver and lymph node-scavenging receptor for HA and related glycosaminoglycans. Stabilin-2 is a scavenger receptor with a broad range of ligands including advanced glycation end (AGE) products, acetylated low density lipoprotein and procollagen peptides. In contrast, stabilin-1 does not bind HA, but binds acetylated low density lipoprotein and AGEs with lower affinity. As AGEs accum
Probab=33.28 E-value=86 Score=24.66 Aligned_cols=39 Identities=23% Similarity=0.362 Sum_probs=31.8
Q ss_pred cCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
.+++.+|++.|+-.|..|.|-++-+.|-+.|.+.=.+-|
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~d~C~~GW 51 (93)
T cd03515 13 KLTYTEAKAACEAEGAHLATYSQLSAAQQLGFHLCAAGW 51 (93)
T ss_pred ccCHHHHHHHHHHcCCccCCHHHHHHHHHcCccccCccc
Confidence 488999999999999999999999888876655443433
No 26
>cd03516 Link_domain_CD44_like This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding domain of CD44 is an extended domain comprised of a single link module flanked with N-and C- extensions. These extensions are essential for folding and for functional activity. This group also contains the cell surface retention sequence (CRS) binding protein-1 (CRSBP-1) and lymph vessel endothelial receptor-1 (LYVE-1). CRSBP-1 is a cell surface binding protein for the CRS motif of PDGF-BB (platelet-derived growth factor-BB) and is responsible for the cell surface retention of PDGF-BB in SSV-transformed cells. CRSBP-1 may play a role in autocrine regulation of cell growth mediated by CRS containing growth regulators. LYVE-1 is preferentially expressed on the lymphatic endothelium and is used as a molecular marke
Probab=32.83 E-value=69 Score=27.32 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=32.2
Q ss_pred cCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
.+++.+|.+.|+.+|.+|.|-+|-+.|-+.|.+.=.+-|
T Consensus 18 ~lnf~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~aGW 56 (144)
T cd03516 18 SLNFTEAKEACRALGLTLASKAQVETALKFGFETCRYGW 56 (144)
T ss_pred cCCHHHHHHHHHHcCCeeCCHHHHHHHHHcChhccCcce
Confidence 488999999999999999999999998887655444433
No 27
>cd03592 CLECT_selectins_like C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CLECT_selectins_like: C-type lectin-like domain (CTLD) of the type found in the type 1 transmembrane proteins: P(platlet)-, E(endothelial)-, and L(leukocyte)- selectins (sels). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. P- E- and L-sels are cell adhesion receptors that mediate the initial attachment, tethering, and rolling of lymphocytes on inflamed vascular walls enabling subsequent lymphocyte adhesion and transmigration. L- sel is expressed constitutively on most leukocytes. P-sel is stored in the Weibel-Palade bodies of endothelial cells and in the alpha granules of platlets. E- sels are present on endothelial cells. Following platelet and/or endothelial cell activation P- sel is rapidly translocated to the cell surface and E-sel exp
Probab=31.66 E-value=32 Score=27.38 Aligned_cols=28 Identities=32% Similarity=0.517 Sum_probs=20.7
Q ss_pred cCCHHHHHHHHHHcCCCCC---CHHHHHHHH
Q psy8678 182 HVSWNDAVAYCTWRGARLP---TEAEWEYGC 209 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLP---TEaEWEyAA 209 (394)
..+|.+|.++|+..|..|- +++|=++..
T Consensus 9 ~~~w~~A~~~C~~~g~~La~i~s~~e~~~i~ 39 (115)
T cd03592 9 KMTFNEAVKYCKSRGTDLVAIQNAEENALLN 39 (115)
T ss_pred ccCHHHHHHHHHHcCCeEeecCCHHHHHHHH
Confidence 4789999999999998664 455544433
No 28
>smart00445 LINK Link (Hyaluronan-binding).
Probab=31.10 E-value=74 Score=25.08 Aligned_cols=40 Identities=20% Similarity=0.364 Sum_probs=32.2
Q ss_pred ccCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
..+++.+|++.|+-.|..|-|-+|-+.|-+.+.+.=.+-|
T Consensus 13 y~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~Gld~C~~GW 52 (94)
T smart00445 13 YKLTFAEAREACRAQGATLATVGQLYAAWQDGFDTCDAGW 52 (94)
T ss_pred CccCHHHHHHHHHHcCCEeCCHHHHHHHHHhchhhcCccc
Confidence 4588999999999999999999999888876655433333
No 29
>cd03599 CLECT_DGCR2_like C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CLECT_DGCR2_like: C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. DGS is also known velo-cardio-facial syndrome (VCFS). DGS is a genetic abnormality that results in malformations of the heart, face, and limbs and is associated with schizophrenia and depressive disorders. DGCR2 is a candidate for involvement in the pathogenesis of DGS since the DGCR2 gene lies within the minimal DGS critical region (MDGRC) of 22q11, which when deleted gives rise to DGS, and the DGCR2 gene is in close proximity to the balanced translocation breakpoint in a DGS patient having a balanced translocation.
Probab=31.06 E-value=35 Score=29.40 Aligned_cols=20 Identities=30% Similarity=0.335 Sum_probs=17.3
Q ss_pred cCCHHHHHHHHHHcCCCCCC
Q psy8678 182 HVSWNDAVAYCTWRGARLPT 201 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPT 201 (394)
..+|.||.++|+.+|..|.+
T Consensus 21 ~~tw~dA~~~C~~~Gg~Las 40 (153)
T cd03599 21 GENYWDAVQTCQKVNGSLAT 40 (153)
T ss_pred cCCHHHHHHHHHHcCCEEcC
Confidence 47999999999999987765
No 30
>PF05966 Chordopox_A33R: Chordopoxvirus A33R protein; InterPro: IPR009238 This family consists of several Chordopoxvirus A33R proteins. A33R plays a role in promoting Ab-resistant cell-to-cell spread of virus [] and interacts with A36R to incorporate the protein into the outer membrane of intracellular enveloped virions (IEV) [].; PDB: 3K7B_A.
Probab=30.21 E-value=26 Score=31.21 Aligned_cols=22 Identities=23% Similarity=0.536 Sum_probs=15.5
Q ss_pred CCHHHHHHHHHHcCCCCCCHHH
Q psy8678 183 VSWNDAVAYCTWRGARLPTEAE 204 (394)
Q Consensus 183 Vsw~dA~~yc~wlg~RLPTEaE 204 (394)
.+|+||.+-|.-+|++||+...
T Consensus 122 ~T~~~A~~~C~~~g~~LPs~~l 143 (190)
T PF05966_consen 122 KTFDEANSDCNNKGQTLPSKDL 143 (190)
T ss_dssp EEHHHHHHHHHHTT-B---HHH
T ss_pred CCHHHHHHHHHhcCCcCCCcch
Confidence 5699999999999999999643
No 31
>TIGR02145 Fib_succ_major Fibrobacter succinogenes major paralogous domain. This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulfide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.
Probab=29.39 E-value=21 Score=31.38 Aligned_cols=26 Identities=31% Similarity=0.751 Sum_probs=18.3
Q ss_pred CHHHHHH-HHHHcCCCCCCHHHHHHHHh
Q psy8678 184 SWNDAVA-YCTWRGARLPTEAEWEYGCR 210 (394)
Q Consensus 184 sw~dA~~-yc~wlg~RLPTEaEWEyAAr 210 (394)
+|..|.. .|= .|.||||.+||+....
T Consensus 51 ~w~aa~~~~cP-~GWhlPs~~Ew~~L~~ 77 (171)
T TIGR02145 51 TWAAAMDSICP-EGWHLPSTTEWNTLFD 77 (171)
T ss_pred EHHHhccCcCC-CCCCCCCHHHHHHHHH
Confidence 4555554 442 4889999999987754
No 32
>PF00059 Lectin_C: Lectin C-type domain; InterPro: IPR001304 Lectins occur in plants, animals, bacteria and viruses. Initially described for their carbohydrate-binding activity [], they are now recognised as a more diverse group of proteins, some of which are involved in protein-protein, protein-lipid or protein-nucleic acid interactions []. There are at least twelve structural families of lectins: C-type lectins, which are Ca+-dependent. S-type (galectins), a widespread family of glycan-binding proteins []. I-type, which have an immunoglobulin-like fold and can recognise sialic acids, other sugars and glycosaminoglycans []. P-type, which bind phosphomannosyl receptors []. Pentraxins []. (Trout) egg lectins. Calreticulin and calnexin, which act as molecular chaperones of the endoplasmic reticulum []. ERGIC-53 and VIP-36 []. Discoidins []. Eel aggutinins (fucolectins) []. Annexin lectins []. Fibrinogen-type lectins, which includes ficolins, tachylectins 5A and 5B, and Limax flavus (Spotted garden slug) agglutinin (these proteins have clear distinctions from one another, but they share a homologous fibrinogen-like domain used for carbohydrate binding). Also unclassified orphan lectins, including amphoterin, Cel-II, complement factor H, thrombospondin, sailic acid-binding lectins, adherence lectin, and cytokins (such as tumour necrosis factor and several interleukins). C-type lectins can be further divided into seven subgroups based on additional non-lectin domains and gene structure: (I) hyalectans, (II) asialoglycoprotein receptors, (III) collectins, (IV) selectins, (V) NK group transmembrane receptors, (VI) macrophage mannose receptors, and (VII) simple (single domain) lectins []. Therefore, lectins are a diverse group of proteins, both in terms of structure and activity. Carbohydrate binding ability may have evolved independently and sporadically in numerous unrelated families, where each evolved a structure that was conserved to fulfil some other activity and function. In general, animal lectins act as recognition molecules within the immune system, their functions involving defence against pathogens, cell trafficking, immune regulation and the prevention of autoimmunity [].; GO: 0005488 binding; PDB: 1T8D_A 2H2T_B 1T8C_A 2H2R_A 1TN3_A 1RJH_A 1HTN_A 3G8K_B 2E3X_B 1UMR_D ....
Probab=29.16 E-value=22 Score=27.09 Aligned_cols=29 Identities=31% Similarity=0.614 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHcCCCC---CCHHHHHHHHhc
Q psy8678 183 VSWNDAVAYCTWRGARL---PTEAEWEYGCRG 211 (394)
Q Consensus 183 Vsw~dA~~yc~wlg~RL---PTEaEWEyAArg 211 (394)
++|.+|..+|+-.|..| .++.|.++...-
T Consensus 3 ~~~~~A~~~C~~~~~~L~~i~~~~e~~~i~~~ 34 (105)
T PF00059_consen 3 MTWEEAQQYCQSMGAHLASINSEEENDFIQSQ 34 (105)
T ss_dssp EEHHHHHHHHHHTTSEEB-GSSHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCCEEeEeCCHHHhhhhhhc
Confidence 68999999999999755 556688776653
No 33
>PF09603 Fib_succ_major: Fibrobacter succinogenes major domain (Fib_succ_major); InterPro: IPR011871 This domain of about 175 to 200 amino acids is found, in from one to five copies, in over 50 proteins in Fibrobacter succinogenes subsp. succinogenes S85, an obligate anaerobe of the rumen. Many members of this family have an apparent lipoprotein signal sequence. Conserved cysteine residues, suggestive of disulphide bond formation, are also consistent with an extracytoplasmic location for this domain. This domain can also be found in small numbers of proteins in Chlorobium tepidum and Bacteroides thetaiotaomicron.
Probab=28.91 E-value=32 Score=30.05 Aligned_cols=16 Identities=50% Similarity=0.727 Sum_probs=13.9
Q ss_pred CCCCCCHHHHHHHHhc
Q psy8678 196 GARLPTEAEWEYGCRG 211 (394)
Q Consensus 196 g~RLPTEaEWEyAArg 211 (394)
|.||||.+||+.....
T Consensus 73 GWrlPt~~Ew~~L~~~ 88 (184)
T PF09603_consen 73 GWRLPTRAEWNSLFKY 88 (184)
T ss_pred CCCCCCHHHHHHHHHh
Confidence 8999999999877654
No 34
>cd01102 Link_Domain The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor necrosis factor-stimulated gene-6. TSG-6 has a strong anti-inflammatory effect in models of acute inflammation and autoimmune arthritis and plays an essential role in female fertility. This group also contains the link domains of the chondroitin sulfate proteoglycan core proteins (CSPG) including aggrecan, versican, neurocan, and brevican and the link domains of the vertebrate HAPLN (HA and proteoglycan binding link) protein family. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates in which other CSPGs substitute for aggregan might contribute to the structural integrity of many different tissues. Members of
Probab=28.82 E-value=85 Score=24.64 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccC
Q psy8678 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 220 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypw 220 (394)
..+++.+|.+.|+-+|..|-|-.|-+.|-+.|.+.=.+-|
T Consensus 12 y~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~~~C~~GW 51 (92)
T cd01102 12 YKLTFAEAALACKARGAHLATPGQLEAAWQDGFDVCTAGW 51 (92)
T ss_pred cccCHHHHHHHHHHcCCEeCCHHHHHHHHHcchhhcCCcc
Confidence 4588999999999999999999999888876654433333
No 35
>PHA02953 IEV and EEV membrane glycoprotein; Provisional
Probab=28.24 E-value=46 Score=29.23 Aligned_cols=22 Identities=36% Similarity=0.421 Sum_probs=19.1
Q ss_pred cCCHHHHHHHHHHcCCCCCCHH
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEA 203 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEa 203 (394)
..+|.||.++|..+|.+||...
T Consensus 65 ~~tW~~A~~~C~~~Gg~L~~~~ 86 (170)
T PHA02953 65 QLSTYGAVYLCNKYRARLPKPN 86 (170)
T ss_pred cCCHHHHHHHHHhcCCCCCCCc
Confidence 4799999999999999998743
No 36
>PF07979 Intimin_C: Intimin C-type lectin domain; InterPro: IPR013117 This domain is found at the C terminus of intimin. Its structure has been solved and shown to have a C-lectin type of structure []. Intimin is a bacterial adhesion molecule involved in intimate attachment of enteropathogenic and enterohemorrhagic Escherichia coli to mammalian host cells. Intimin targets the translocated intimin receptor (Tir), which is exported by the bacteria and integrated into the host cell plasma membrane.; GO: 0005488 binding, 0009405 pathogenesis, 0009986 cell surface; PDB: 1CWV_A 2ZQK_B 2ZWK_C 1F02_I 1E5U_I 1F00_I 3NCX_B 3NCW_D.
Probab=26.98 E-value=24 Score=28.15 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.0
Q ss_pred ccCCHHHHHHHHHHcCCCCCCHH
Q psy8678 181 VHVSWNDAVAYCTWRGARLPTEA 203 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RLPTEa 203 (394)
..|++.+|...|+-++.|||+-.
T Consensus 11 ~~~~Y~~A~~~C~~~s~~LpsS~ 33 (101)
T PF07979_consen 11 SRVTYSEAESICQNNSGRLPSSQ 33 (101)
T ss_dssp CEETHHHHHHHTTTTCCESBSSH
T ss_pred ceEeHHHHHHHHHhccccCcccH
Confidence 35899999999999999999843
No 37
>PHA03093 EEV glycoprotein; Provisional
Probab=26.76 E-value=55 Score=28.97 Aligned_cols=20 Identities=30% Similarity=0.571 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHcCCCCCCH
Q psy8678 183 VSWNDAVAYCTWRGARLPTE 202 (394)
Q Consensus 183 Vsw~dA~~yc~wlg~RLPTE 202 (394)
.+|+||.+-|.-+|++||..
T Consensus 118 kTf~dA~~~C~~~g~~LPs~ 137 (185)
T PHA03093 118 KTFSDAKADCAKKSSTLPNS 137 (185)
T ss_pred cCHHHHHHHHHhcCCcCCCc
Confidence 78999999999999999984
No 38
>cd03595 CLECT_chondrolectin_like C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CLECT_chondrolectin_like: C-type lectin-like domain (CTLD) of the type found in the human type-1A transmembrane proteins chondrolectin (CHODL) and layilin. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CHODL is predominantly expressed in muscle cells and is associated with T-cell maturation. Various alternatively spliced isoforms have been of CHODL have been identified. The transmembrane form of CHODL is localized in the ER-Golgi apparatus. Layilin is widely expressed in different cell types. The extracellular CTLD of layilin binds hyaluronan (HA), a major constituent of the extracellular matrix (ECM). The cytoplasmic tail of layilin binds various members of the band 4.1/ERM superfamily (talin, radixin, and merlin). The ERM proteins are cytoskeleton-membrane l
Probab=25.57 E-value=46 Score=28.16 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=17.8
Q ss_pred ccCCHHHHHHHHHHcCCCCCC
Q psy8678 181 VHVSWNDAVAYCTWRGARLPT 201 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RLPT 201 (394)
..++|.+|..+|+.+|..|.+
T Consensus 23 ~~~tw~~A~~~C~~~g~~Las 43 (149)
T cd03595 23 RRLNFEEARQACREDGGELLS 43 (149)
T ss_pred cccCHHHHHHHHHHcCCEECc
Confidence 468999999999999986654
No 39
>cd03517 Link_domain_CSPGs_modules_1_3 Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: versican, neurocan, and brevican. The link domain is a hyaluronan (HA)-binding domain. CSPGs are characterized by an N-terminal globular domain (G1 domain) containing two contiguous link modules (modules 1 and 2). Both link modules of the G1 domain of aggrecan are involved in interaction with HA. In addition, aggrecan contains a second globular domain (G2) which contains link modules 3 and 4. G2 appears to lack HA-binding activity. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues.
Probab=24.97 E-value=1.2e+02 Score=24.01 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=33.3
Q ss_pred cCCHHHHHHHHHHcCCCCCCHHHHHHHHhcCCCCccccCC
Q psy8678 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWG 221 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLPTEaEWEyAArg~~~~~~ypwg 221 (394)
.+++.+|.+.|.-.|..|.|-++-+.|-+.|.+.=.+-|-
T Consensus 13 ~l~f~eA~~aC~~~ga~lAs~~QL~~Aw~~G~~~C~~GWL 52 (95)
T cd03517 13 ALTFPRAQRACLDISAQIATPEQLLAAYEDGFEQCDAGWL 52 (95)
T ss_pred eECHHHHHHHHHHcCCEeCCHHHHHHHHHcCcccccCCCC
Confidence 4789999999999999999999998888876665555554
No 40
>cd03600 CLECT_thrombomodulin_like C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CLECT_thrombomodulin_like: C-type lectin-like domain (CTLD) of the type found in human thrombomodulin(TM), Endosialin, C14orf27, and C1qR. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In these thrombomodulin-like proteins the residues involved in coordinating Ca2+ in the classical MBP-A CTLD are not conserved. TM exerts anti-fibrinolytic and anti-inflammatory activity. TM also regulates blood coagulation in the anticoagulant protein C pathway. In this pathway, the procoagulant properties of thrombin (T) are lost when it binds TM. TM also plays a key role in tumor biology. It is expressed on endothelial cells and on several type of tumor cell including squamous cell carcinoma. Loss of TM expression correlates with advanced stage and poor prognosis. Loss of function of TM func
Probab=23.87 E-value=48 Score=27.59 Aligned_cols=27 Identities=19% Similarity=0.257 Sum_probs=19.8
Q ss_pred cCCHHHHHHHHHHcCCCCC---CHHHHHHH
Q psy8678 182 HVSWNDAVAYCTWRGARLP---TEAEWEYG 208 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLP---TEaEWEyA 208 (394)
..+|.+|.++|+.+|..|- +..|=++.
T Consensus 13 ~~sw~~A~~~C~~~gg~La~i~s~~E~~~v 42 (141)
T cd03600 13 KLTFLEAQRSCIELGGNLATVRSGEEADVV 42 (141)
T ss_pred ccCHHHHHHHHHhhCCEeeecCCHHHHHHH
Confidence 4889999999999997664 44443333
No 41
>cd03591 CLECT_collectin_like C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CLECT_collectin_like: C-type lectin-like domain (CTLD) of the type found in human collectins including lung surfactant proteins A and D, mannose- or mannan binding lectin (MBL), and CL-L1 (collectin liver 1). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. The CTLDs of these collectins bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, or apoptotic cells) and mediate functions associated with killing and phagocytosis. MBPs recognize high mannose oligosaccharides in a calcium dependent manner, bind to a broad range of pathogens, and trigger cell killing by activating the complement pathway. MBP also acts directly as an opsonin. SP-A and SP-D in addition to functioning as host defense components, a
Probab=23.66 E-value=45 Score=26.53 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=19.4
Q ss_pred ccCCHHHHHHHHHHcCCCCC---CHHHHHH
Q psy8678 181 VHVSWNDAVAYCTWRGARLP---TEAEWEY 207 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RLP---TEaEWEy 207 (394)
...+|.+|..+|+.+|..|- ++.|=++
T Consensus 9 ~~~~w~~A~~~C~~~g~~La~i~s~~e~~~ 38 (114)
T cd03591 9 EEKNFDDAQKLCSEAGGTLAMPRNAAENAA 38 (114)
T ss_pred ceeCHHHHHHHHhhcCCEEecCCCHHHHHH
Confidence 34789999999999987553 4444433
No 42
>cd03588 CLECT_CSPGs C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins. CLECT_CSPGs: C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins (CSPGs) in human and chicken aggrecan, frog brevican, and zebra fish dermacan. CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Xenopus brevican is expressed in the notochord and the brain during early embryogenesis. Zebra fish dermacan is expressed in dermal bones and may play a role in dermal bone development. CSPGs do contain LINK domain(s) which bind HA. These LINK domains are considered by one classif
Probab=23.59 E-value=49 Score=26.77 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=20.9
Q ss_pred cCCHHHHHHHHHHcCCCCC---CHHHHHHHH
Q psy8678 182 HVSWNDAVAYCTWRGARLP---TEAEWEYGC 209 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RLP---TEaEWEyAA 209 (394)
.++|.+|..+|+.+|.+|- +..|=++.+
T Consensus 19 ~~sw~~A~~~C~~~gg~La~i~s~~e~~fl~ 49 (124)
T cd03588 19 RETWEDAERRCREQQGHLSSIVTPEEQEFVN 49 (124)
T ss_pred ccCHHHHHHHHHhcCCEEeccCCHHHHHHHH
Confidence 4899999999999998773 444544443
No 43
>cd03603 CLECT_VCBS A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. CLECT_VCBS: A bacterial subgroup of the C-type lectin-like (CTLD) domain; a subgroup of bacterial protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces including CaCO3 and ice. Bacterial CTLDs within this group are functionally uncharacterized. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. CTLDs may bind a variety of carbohydrate ligands including mannose, N-acetylglucosamine, galactose, N-acetylgalactosamine, and fucose. CTLDs associate with each other through several different surface
Probab=23.23 E-value=56 Score=26.31 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=23.4
Q ss_pred ccCCHHHHHHHHHHcCCCC---CCHHHHHHHHh
Q psy8678 181 VHVSWNDAVAYCTWRGARL---PTEAEWEYGCR 210 (394)
Q Consensus 181 ~~Vsw~dA~~yc~wlg~RL---PTEaEWEyAAr 210 (394)
..++|.+|..+|+..|..| -++.|.++...
T Consensus 8 ~~~sw~~A~~~C~~~g~~La~I~s~~E~~fv~~ 40 (118)
T cd03603 8 GGMTWEAAQTLAESLGGHLVTINSAEENDWLLS 40 (118)
T ss_pred CCcCHHHHHHHHHHcCCEEcccCCHHHHHHHHH
Confidence 3589999999999999755 56777776654
No 44
>cd03596 CLECT_tetranectin_like C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CLECT_tetranectin_like: C-type lectin-like domain (CTLD) of the type found in the tetranectin (TN), cartilage derived C-type lectin (CLECSF1), and stem cell growth factor (SCGF). CTLD refers to a domain homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. TN binds to plasminogen and stimulates activation of plasminogen, playing a key role in the regulation of proteolytic processes. The TN CTLD binds two calcium ions. Its calcium free form binds to various kringle-like protein ligands. Two residues involved in the coordination of calcium are critical for the binding of TN to the fourth kringle (K4) domain of plasminogen (Plg K4). TN binds the kringle 1-4 form of angiostatin (AST K1-4). AST K1-4 is a fragment of Plg, commonly found in cancer tissues. TN inhibits the bin
Probab=22.43 E-value=58 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=20.5
Q ss_pred cCCHHHHHHHHHHcCCCC---CCHHHHHHHH
Q psy8678 182 HVSWNDAVAYCTWRGARL---PTEAEWEYGC 209 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RL---PTEaEWEyAA 209 (394)
..+|.+|..+|+.+|.+| =++.|-++..
T Consensus 18 ~~~w~~A~~~C~~~g~~La~i~s~~e~~~l~ 48 (129)
T cd03596 18 TKHYHEASEDCIARGGTLATPRDSDENDALR 48 (129)
T ss_pred cCCHHHHHHHHHhcCCeEecCCCHHHHHHHH
Confidence 468999999999998755 4455655443
No 45
>cd00037 CLECT C-type lectin (CTL)/C-type lectin-like (CTLD) domain. CLECT: C-type lectin (CTL)/C-type lectin-like (CTLD) domain; protein domains homologous to the carbohydrate-recognition domains (CRDs) of the C-type lectins. This group is chiefly comprised of eukaryotic CTLDs, but contains some, as yet functionally uncharacterized, bacterial CTLDs. Many CTLDs are calcium-dependent carbohydrate binding modules; other CTLDs bind protein ligands, lipids, and inorganic surfaces, including CaCO3 and ice. Animal C-type lectins are involved in such functions as extracellular matrix organization, endocytosis, complement activation, pathogen recognition, and cell-cell interactions. For example: mannose-binding lectin and lung surfactant proteins A and D bind carbohydrates on surfaces (e.g. pathogens, allergens, necrotic, and apoptotic cells) and mediate functions associated with killing and phagocytosis; P (platlet)-, E (endothelial)-, and L (leukocyte)- selectins (sels) mediate the initia
Probab=20.56 E-value=1e+02 Score=23.30 Aligned_cols=30 Identities=27% Similarity=0.570 Sum_probs=23.3
Q ss_pred cCCHHHHHHHHHHcCCCC---CCHHHHHHHHhc
Q psy8678 182 HVSWNDAVAYCTWRGARL---PTEAEWEYGCRG 211 (394)
Q Consensus 182 ~Vsw~dA~~yc~wlg~RL---PTEaEWEyAArg 211 (394)
.++|.+|.++|+-.|.+| .+..|.++-..-
T Consensus 9 ~~~~~~A~~~C~~~~~~L~~~~~~~e~~~i~~~ 41 (116)
T cd00037 9 KLTWEEAQEYCRSLGGHLASIHSEEENDFLASL 41 (116)
T ss_pred ccCHHHHHHHHHHcCCEEcccCCHHHHHHHHHH
Confidence 589999999999998765 445777766653
Done!