RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8678
(394 letters)
>1z70_X C-alpha-formyglycine-generating enzyme; formylglycine, multiple
sulfatase deficiency, cysteine sulfe oxidoreductase;
HET: OCS NAG CXS; 1.15A {Homo sapiens} SCOP: d.169.1.7
PDB: 1y1f_X* 1y1e_X* 1y1h_X* 1y1i_X* 1y1g_X* 1y1j_X*
2aii_X* 2aij_X* 2aft_X* 2aik_X* 2hi8_X* 2hib_X* 2afy_X*
Length = 311
Score = 364 bits (935), Expect = e-126
Identities = 185/348 (53%), Positives = 223/348 (64%), Gaps = 50/348 (14%)
Query: 4 LPAPPVERYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEF 63
+P + MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F++F
Sbjct: 8 VPGERQLAHSKMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKF 67
Query: 64 VSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHIS 123
V++TGY+TEAEKFGD+FVFE +LSE+ + I V
Sbjct: 68 VNSTGYLTEAEKFGDSFVFEGMLSEQVKTNIQ---------------------QAVAAAP 106
Query: 124 WNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHV 183
W V WR HPEG DSTI HR +HPV+HV
Sbjct: 107 WWLPVKGANWR-----------------------------HPEGPDSTILHRPDHPVLHV 137
Query: 184 SWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNN 243
SWNDAVAYCTW G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP N
Sbjct: 138 SWNDAVAYCTWAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTN 197
Query: 244 TAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVK 303
T DG+ TAPV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D+VK
Sbjct: 198 TGEDGFQGTAPVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVK 257
Query: 304 KGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPTTGTDK 351
KGGSY+C+ YCYR+RCAARSQNTPDSSA NLGFRCAAD+ PT
Sbjct: 258 KGGSYMCHRSYCYRYRCAARSQNTPDSSASNLGFRCAADRLPTMDRGS 305
>2q17_A Formylglycine generating enzyme; FGE, sulfatase, unknown function;
2.10A {Streptomyces coelicolor}
Length = 346
Score = 347 bits (892), Expect = e-118
Identities = 150/347 (43%), Positives = 187/347 (53%), Gaps = 53/347 (15%)
Query: 5 PAPPVERYKDMVLLPGDTFRMGTNKP-ILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEF 63
PA + V LPG F MG DGE P V L F++D+ V+N +F F
Sbjct: 48 PAARPRSTRGQVRLPGGEFAMGDAFGEGYPADGETPVHTVRLRPFHIDETAVTNARFAAF 107
Query: 64 VSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHIS 123
V ATG+VT+AE+FG + VF +++ + +
Sbjct: 108 VKATGHVTDAERFGSSAVFHLVVAAPDA----------------------DVLGSAAGAP 145
Query: 124 WNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHV 183
W V WR PEG S I R NHPVVHV
Sbjct: 146 WWINVRGAHWR-----------------------------RPEGARSDITGRPNHPVVHV 176
Query: 184 SWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNN 243
SWNDA AY W G RLPTEAEWEY RGGL R + WG+ LTP G R N+WQG FP N
Sbjct: 177 SWNDATAYARWAGKRLPTEAEWEYAARGGLAGRRYAWGDELTPGGRWRCNIWQGRFPHVN 236
Query: 244 TAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTADWWNVHHH-PAPSYNPKGPTTGTDKV 302
TA DG+LSTAPV SY+ N GL+N GNVWEW +DW++ ++ +P+ +P GP TG +V
Sbjct: 237 TAEDGHLSTAPVKSYRPNGHGLWNTAGNVWEWCSDWFSPTYYAESPTVDPHGPGTGAARV 296
Query: 303 KKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPTTGT 349
+GGSYLC++ YC R+R AARS NTPDSS+GNLGFRCA D T+G+
Sbjct: 297 LRGGSYLCHDSYCNRYRVAARSSNTPDSSSGNLGFRCANDADLTSGS 343
>1y4j_A Sulfatase modifying factor 2; formylglycine, sulfatases, multiple
sulfatase deficiency, HO DUF323, sugar binding protein;
HET: NAG FUC; 1.86A {Homo sapiens} SCOP: d.169.1.7
Length = 284
Score = 325 bits (835), Expect = e-111
Identities = 127/341 (37%), Positives = 169/341 (49%), Gaps = 70/341 (20%)
Query: 14 DMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEA 73
MV L G F MGTN P +DGE P R T+ F +D V+N F++FV Y TEA
Sbjct: 3 SMVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEA 61
Query: 74 EKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTW 133
E FG +FVFE +S+E R K +Q P+ + W
Sbjct: 62 EMFGWSFVFEDFVSDELRNKATQ---------------------PMKSVLW--------- 91
Query: 134 RGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCT 193
W W P G S I R+ HPV+HVSWNDA AYC
Sbjct: 92 ----------WLPV----------EKAFWRQPAGPGSGIRERLEHPVLHVSWNDARAYCA 131
Query: 194 WRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTA 253
WRG RLPTE EWE+ RGGL+ +++PWGN P +R N+WQG+FP + A DG+ +
Sbjct: 132 WRGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKGDKAEDGFHGVS 188
Query: 254 PVMSYK-ENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLC-- 310
PV ++ +N +GLY+++GNVWEWTA + +V +G S++
Sbjct: 189 PVNAFPAQNNYGLYDLLGNVWEWTASPY-------------QAAEQDMRVLRGASWIDTA 235
Query: 311 NEQYCYRHRCAARSQNTPDSSAGNLGFRCAADKGPTTGTDK 351
+ +R R R NTPDS++ NLGFRCAAD G G +
Sbjct: 236 DGSANHRARVTTRMGNTPDSASDNLGFRCAADAGRPPGELR 276
>2y3c_A Treponema denticola variable protein 1; unknown function,
periodontal disease; HET: CME; 1.40A {Treponema
denticola}
Length = 294
Score = 285 bits (732), Expect = 3e-95
Identities = 67/328 (20%), Positives = 112/328 (34%), Gaps = 68/328 (20%)
Query: 14 DMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEA 73
M + ++G N V+L A+ + + EV+ +Q +
Sbjct: 31 TMKGIAAVNAQLGHND-----YSINQPHTVSLSAYLIGETEVTQELWQAVMGNNPSHFNG 85
Query: 74 EKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTW 133
E + PV +++W A+A+C
Sbjct: 86 SPAVG---------------------------------ETQGKRPVENVNWYQAIAFCNK 112
Query: 134 RGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCT 193
+L E + + + + + W+ A
Sbjct: 113 LSIKLNLEPCYTV--------------NVGGNPVDFAALSFDQIPDSNNADWDKAELDIN 158
Query: 194 WRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTA 253
+G RLPTEAEWE+ +GG +++ + N E + W G + T
Sbjct: 159 KKGFRLPTEAEWEWAAKGGTDDK-WSGTNT---EAELKNYAWYGS--------NSGSKTH 206
Query: 254 PVMSYKENKFGLYNMVGNVWEWTADWWNVHHH-PAPSYNPKGPTTGTDKVKKGGSYLCNE 312
V K N +GLY++ GNV EW DW H + + GP +G+ +V +GGS+ +
Sbjct: 207 EVKKKKPNWYGLYDIAGNVAEWCWDWRADIHTGDSFPQDYPGPASGSGRVLRGGSWAGSA 266
Query: 313 QYCYRHRCAARSQNTPDSSAGNLGFRCA 340
YC R +P +LGFR A
Sbjct: 267 DYC---AVGERVNISPGVRCSDLGFRLA 291
>1yu0_A Major tropism determinant (MTD-P1); C-type lectin, beta sandwich,
beta prism, variability, diver generating retroelement,
viral protein; 1.56A {Bordetella phage bpp-1} SCOP:
b.163.1.1 d.169.1.8 PDB: 2iou_A 1yu1_A 1yu2_A 1yu4_A
1yu3_A
Length = 381
Score = 127 bits (319), Expect = 2e-33
Identities = 32/206 (15%), Positives = 54/206 (26%), Gaps = 34/206 (16%)
Query: 140 TEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCTWRGARL 199
T+ +Y + + +G + +W + T G RL
Sbjct: 202 TDGTSKYNVTIADGSASPKKSTKFGGDG---------SAAYSDGAWYNFAEVMTHHGKRL 252
Query: 200 PTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTAPVMSYK 259
P E++ G E G P +
Sbjct: 253 PNYNEFQALAFGTTEA--TSSGGTDVPTTGVNGT-----------------GATSAWNIF 293
Query: 260 ENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKG---PTTGTDKVKKGGSYLCNEQYCY 316
+K+G+ G +W W ++ V+ + N G GG++
Sbjct: 294 TSKWGVVQASGCLWTWGNEFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSGS 353
Query: 317 RHRCAARSQNTPDSSAGNLGFRCAAD 342
R AA + P S G R D
Sbjct: 354 R---AALWYSGPSFSFAFFGARGVCD 376
Score = 65.7 bits (159), Expect = 6e-12
Identities = 9/38 (23%), Positives = 13/38 (34%)
Query: 117 HPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLEN 154
+W + T G RLP E++ G E
Sbjct: 231 AAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEA 268
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.66
Identities = 5/27 (18%), Positives = 10/27 (37%), Gaps = 9/27 (33%)
Query: 152 LENRLFPWGSWLHPE-----GIDSTIE 173
L+ L + + I +T+E
Sbjct: 25 LQASLKLYA----DDSAPALAIKATME 47
Score = 28.4 bits (62), Expect = 2.7
Identities = 4/30 (13%), Positives = 14/30 (46%), Gaps = 7/30 (23%)
Query: 90 ERAKISQVRHDMKRFE-------GLDSTIE 112
E+ + +++ +K + + +T+E
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
>3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center
for structural genomics, MCSG, O 5-phosphate
decarboxylase, lyase; 1.84A {Anaerococcus prevotii}
Length = 290
Score = 30.5 bits (68), Expect = 0.90
Identities = 20/132 (15%), Positives = 37/132 (28%), Gaps = 19/132 (14%)
Query: 61 QEFVSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRH----------DMKRFEGLDST 110
+E + T V K + +E E A + + D+KR + ++
Sbjct: 50 KEIIDQTYDVCAIYKLQIAY-YESYGIEGMIAYRDTLSYLREKDLLSIGDVKR-SDIAAS 107
Query: 111 IEHRMHHPVVHISWNDAVAYCTWRGARL--PTEAEWEYGCRGGLENRLFPWGSWLHPEGI 168
+ D + + G P E E G +G +F +P
Sbjct: 108 AKMYAKAHFEGDFETDFITLNPYMGMDSIEPYEEYIEKGDKG-----VFVLLRTSNPGAK 162
Query: 169 DSTIEHRMNHPV 180
D +
Sbjct: 163 DFEVLPVDGEEF 174
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 28.4 bits (62), Expect = 2.4
Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 86 LSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTE 141
L++EE + V ++R L E R+ I + A L
Sbjct: 17 LTDEEAEHVWAV---VQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNET 69
>1cwv_A Invasin; integrin-binding protein, INV gene, structural protein;
HET: CIT; 2.30A {Yersinia pseudotuberculosis} SCOP:
b.1.14.1 b.1.14.1 b.1.14.1 b.1.14.1 d.169.1.3
Length = 492
Score = 29.2 bits (64), Expect = 3.1
Identities = 13/79 (16%), Positives = 20/79 (25%), Gaps = 5/79 (6%)
Query: 181 VHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFP-WGN-NLTPRGEHRANVWQGE 238
VS +A C E+ + L+ WG+ W +
Sbjct: 402 SLVSSLEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKK 461
Query: 239 FPTN---NTAADGYLSTAP 254
T+ G L P
Sbjct: 462 TSTDFETMNMDTGALQPGP 480
>1f00_I Intimin; immunoglobulin-like fold, C-type lectin-like fold, cell
adhesion; 1.90A {Escherichia coli} SCOP: b.1.14.1
b.1.14.1 d.169.1.3 PDB: 1f02_I 1e5u_I
Length = 282
Score = 28.4 bits (62), Expect = 4.1
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 14/85 (16%)
Query: 121 HISWNDAVAYCTWRGARLPTE--------AEWEYGCRGGLENRLFPWGSWL------HPE 166
+++NDAV C G +LP+ W + SW+
Sbjct: 193 RVTYNDAVNTCKNFGGKLPSSQNELENVFKAWGAANKYEYYKSSQTIISWVQQTAQDAKS 252
Query: 167 GIDSTIEHRMNHPVVHVSWNDAVAY 191
G+ ST + +P+ ++ +++ AY
Sbjct: 253 GVASTYDLVKQNPLNNIKASESNAY 277
Score = 28.0 bits (61), Expect = 5.0
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 182 HVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPT 241
V++NDAV C G +LP+ + LEN WG +
Sbjct: 193 RVTYNDAVNTCKNFGGKLPSS-------QNELENVFKAWGAANKYEYYKSSQTIISWVQQ 245
Query: 242 NNTAADGYLST 252
A +++
Sbjct: 246 TAQDAKSGVAS 256
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 4.7
Identities = 17/133 (12%), Positives = 39/133 (29%), Gaps = 36/133 (27%)
Query: 2 VLLPAPPVERYKDMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQ 61
VL PA + + + + P I P+ L + D +
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSA-------HI-------PTI--LLSLIWFDVIK------- 401
Query: 62 EFVSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVR-HDMKRFEGLDSTIEHRMHHPVV 120
++ + L+ E++ K S + + + E+ +H +V
Sbjct: 402 ---------SDVMVVVNKLHKYSLV--EKQPKESTISIPSIYLELKVKLENEYALHRSIV 450
Query: 121 HISWNDAVAYCTW 133
+N + +
Sbjct: 451 D-HYNIPKTFDSD 462
>2hw0_A Replicase; alpha+beta, hydrolase, replication; NMR {Porcine
circovirus 2}
Length = 115
Score = 26.5 bits (58), Expect = 6.5
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 5/54 (9%)
Query: 102 KRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENR 155
+ F + + R H + YC+ G L E G R
Sbjct: 67 QTFNKVKWYLGARCHIEKAKGTDQQNKEYCSKEGNLL-----MECGAPRSQGQR 115
>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex,
crystallographic dimer, oxidoreductase; HET: NAI UGA;
1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6
c.26.3.1 PDB: 1dli_A*
Length = 402
Score = 27.9 bits (63), Expect = 7.1
Identities = 9/47 (19%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 81 VFEPLLSEEERAKISQVRHDMKRF-EGLDSTIEHRMHHPVVHISWND 126
++EP+L++ E S + +D++ F + + + +R N+
Sbjct: 347 IYEPMLNKLESEDQSVLVNDLENFKKQANIIVTNRY--------DNE 385
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 27.9 bits (62), Expect = 7.4
Identities = 13/86 (15%), Positives = 26/86 (30%), Gaps = 19/86 (22%)
Query: 46 DAFYLDQHEVSNTQFQEFVSATGYVTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRF- 104
+ HEVS F +V G T ++S + + +
Sbjct: 171 LCVTAETHEVSALWFLWYVKQCGGTTR------------IISTTNGGQERKFVGGSGQVS 218
Query: 105 ----EGLDSTIEHRMHHPVVHISWND 126
+ L + ++ PV++I
Sbjct: 219 ERIMDLLGDRV--KLERPVIYIDQTR 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.450
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,438,777
Number of extensions: 381949
Number of successful extensions: 1080
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1055
Number of HSP's successfully gapped: 50
Length of query: 394
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 298
Effective length of database: 4,021,377
Effective search space: 1198370346
Effective search space used: 1198370346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)