RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8678
(394 letters)
>d1z70x1 d.169.1.7 (X:1086-1371) Sulfatase modifying factor 1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 286
Score = 202 bits (514), Expect = 2e-63
Identities = 182/332 (54%), Positives = 220/332 (66%), Gaps = 50/332 (15%)
Query: 14 DMVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEA 73
MV +P F MGT+ P + +DGE P+R VT+DAFY+D +EVSNT+F++FV++TGY+TEA
Sbjct: 5 KMVPIPAGVFTMGTDDPQIKQDGEAPARRVTIDAFYMDAYEVSNTEFEKFVNSTGYLTEA 64
Query: 74 EKFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTW 133
EKFGD+FVFE +LSE+ + + AVA W
Sbjct: 65 EKFGDSFVFEGMLSEQVKT------------------------------NIQQAVAAAPW 94
Query: 134 RGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCT 193
+W HPEG DSTI HR +HPV+HVSWNDAVAYCT
Sbjct: 95 WLPV--------------------KGANWRHPEGPDSTILHRPDHPVLHVSWNDAVAYCT 134
Query: 194 WRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTA 253
W G RLPTEAEWEY CRGGL NRLFPWGN L P+G+H AN+WQGEFP NT DG+ TA
Sbjct: 135 WAGKRLPTEAEWEYSCRGGLHNRLFPWGNKLQPKGQHYANIWQGEFPVTNTGEDGFQGTA 194
Query: 254 PVMSYKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLCNEQ 313
PV ++ N +GLYN+VGN WEWT+DWW VHH + NPKGP +G D+VKKGGSY+C+
Sbjct: 195 PVDAFPPNGYGLYNIVGNAWEWTSDWWTVHHSVEETLNPKGPPSGKDRVKKGGSYMCHRS 254
Query: 314 YCYRHRCAARSQNTPDSSAGNLGFRCAADKGP 345
YCYR+RCAARSQNTPDSSA NLGFRCAAD+ P
Sbjct: 255 YCYRYRCAARSQNTPDSSASNLGFRCAADRLP 286
>d1y4ja1 d.169.1.7 (A:28-294) Sulfatase modifying factor 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 267
Score = 153 bits (385), Expect = 2e-44
Identities = 126/331 (38%), Positives = 166/331 (50%), Gaps = 70/331 (21%)
Query: 15 MVLLPGDTFRMGTNKPILIKDGEFPSRNVTLDAFYLDQHEVSNTQFQEFVSATGYVTEAE 74
MV L G F MGTN P +DGE P R T+ F +D V+N F++FV Y TEAE
Sbjct: 3 MVQLQGGRFLMGTNSPD-SRDGEGPVREATVKPFAIDIFPVTNKDFRDFVREKKYRTEAE 61
Query: 75 KFGDTFVFEPLLSEEERAKISQVRHDMKRFEGLDSTIEHRMHHPVVHISWNDAVAYCTWR 134
FG +FVFE +S+E R K +Q P+ + W V WR
Sbjct: 62 MFGWSFVFEDFVSDELRNKATQ---------------------PMKSVLWWLPVEKAFWR 100
Query: 135 GARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCTW 194
P G S I R+ HPV+HVSWNDA AYC W
Sbjct: 101 -----------------------------QPAGPGSGIRERLEHPVLHVSWNDARAYCAW 131
Query: 195 RGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTAP 254
RG RLPTE EWE+ RGGL+ +++PWGN P +R N+WQG+FP + A DG+ +P
Sbjct: 132 RGKRLPTEEEWEFAARGGLKGQVYPWGNWFQP---NRTNLWQGKFPKGDKAEDGFHGVSP 188
Query: 255 VMS-YKENKFGLYNMVGNVWEWTADWWNVHHHPAPSYNPKGPTTGTDKVKKGGSYLC--N 311
V + +N +GLY+++GNVWEWTA + +V +G S++ +
Sbjct: 189 VNAFPAQNNYGLYDLLGNVWEWTASPY-------------QAAEQDMRVLRGASWIDTAD 235
Query: 312 EQYCYRHRCAARSQNTPDSSAGNLGFRCAAD 342
+R R R NTPDS++ NLGFRCAAD
Sbjct: 236 GSANHRARVTTRMGNTPDSASDNLGFRCAAD 266
>d1yu0a2 d.169.1.8 (A:171-380) Major tropism determinant (Mtd),
C-terminal domain {Bordetella phage bpp-1 [TaxId:
194699]}
Length = 210
Score = 136 bits (342), Expect = 1e-38
Identities = 27/188 (14%), Positives = 46/188 (24%), Gaps = 25/188 (13%)
Query: 158 PWGSWLHPEGIDSTIEHRMNHPVVHVSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRL 217
+ + +W + T G RLP E++ G E
Sbjct: 41 TIADGSASPKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEAT- 99
Query: 218 FPWGNNLTPRGEHRANVWQGEFPTNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTA 277
G T +G + +K+G+ G +W W
Sbjct: 100 -----------------SSGGTDVPTTGVNGT-GATSAWNIFTSKWGVVQASGCLWTWGN 141
Query: 278 DWWNVHHHPAPSY---NPKGPTTGTDKVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGN 334
++ V+ + GG++ AA + P S
Sbjct: 142 EFGGVNGASEYTANTGGRGSVYAQPAAALFGGAWNGTSLSG---SRAALWYSGPSFSFAF 198
Query: 335 LGFRCAAD 342
G R D
Sbjct: 199 FGARGVCD 206
Score = 61.0 bits (147), Expect = 1e-11
Identities = 9/55 (16%), Positives = 14/55 (25%)
Query: 105 EGLDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPW 159
+ +W + T G RLP E++ G E
Sbjct: 49 PKKSTKFGGDGSAAYSDGAWYNFAEVMTHHGKRLPNYNEFQALAFGTTEATSSGG 103
>d1cwva5 d.169.1.3 (A:887-986) Invasin {Yersinia pseudotuberculosis
[TaxId: 633]}
Length = 100
Score = 28.4 bits (63), Expect = 0.53
Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 5/77 (6%)
Query: 183 VSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFP-WGN-NLTPRGEHRANVWQGEFP 240
VS +A C E+ + L+ WG+ W +
Sbjct: 12 VSSLEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGSLTAYSSDWQSGEYWVKKTS 71
Query: 241 TNNTAAD---GYLSTAP 254
T+ + G L P
Sbjct: 72 TDFETMNMDTGALQPGP 88
Score = 24.6 bits (53), Expect = 9.8
Identities = 8/40 (20%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 123 SWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFP-WGS 161
S +A C E+ + L+ WGS
Sbjct: 13 SSLEASRQCQGSDMSAVLESSRATNGTRAPDGTLWGEWGS 52
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus
licheniformis [TaxId: 1402]}
Length = 82
Score = 27.0 bits (60), Expect = 1.2
Identities = 7/23 (30%), Positives = 11/23 (47%), Gaps = 1/23 (4%)
Query: 68 GYVTEAEKFGDTFVFEPLLSEEE 90
G + K G FV+ P + E +
Sbjct: 55 GALN-HHKEGRVFVYTPNIDESD 76
>d2f86b1 d.17.4.7 (B:343-471) Association domain of
calcium/calmodulin-dependent protein kinase type II
alpha subunit, CAMK2A {Caenorhabditis elegans [TaxId:
6239]}
Length = 129
Score = 27.3 bits (59), Expect = 1.9
Identities = 14/110 (12%), Positives = 26/110 (23%), Gaps = 8/110 (7%)
Query: 184 SWNDAVAYCTWRGARLPTEAEWEYGC-------RGGLENRLFPWGNNLTPRGEHRANVWQ 236
+ DA++ + + G+E F + N +
Sbjct: 17 TLLDAISCKDFETYTRLCDTSMTCFEPEALGNLIEGIEFHRFYFDGNRKNQVHTTMLNPN 76
Query: 237 GEFPTNNTAADGYLSTAPVMSYKENKFGLYNMVGNVWEWTAD-WWNVHHH 285
+ A Y+ + + VW W VH H
Sbjct: 77 VHIIGEDAACVAYVKLTQFLDRNGEAHTRQSQESRVWSKKQGRWVCVHVH 126
>d1wk1a_ d.169.1.1 (A:) Hypothetical protein F28B4.3 {Caenorhabditis
elegans [TaxId: 6239]}
Length = 150
Score = 27.3 bits (59), Expect = 2.4
Identities = 11/107 (10%), Positives = 23/107 (21%), Gaps = 4/107 (3%)
Query: 183 VSWNDAVAYCTWRGARLPT---EAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVWQGEF 239
+S A +C G L + + + + + + +
Sbjct: 18 LSMPQARNFCASAGGYLADDLGDDKNNFYSSIAANTQFWIGLFKNSDGQFYWDRGQGINP 77
Query: 240 PTNNTAADGYLSTAPVMSYKENKFGLYNMVGN-VWEWTADWWNVHHH 285
N + + P G+ WT D
Sbjct: 78 DLLNQPITYWANGEPSNDPTRQCVYFDGRSGDKSKVWTTDTCATPRP 124
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase
TM1293 {Thermotoga maritima [TaxId: 2336]}
Length = 208
Score = 27.4 bits (59), Expect = 2.6
Identities = 17/139 (12%), Positives = 29/139 (20%), Gaps = 6/139 (4%)
Query: 107 LDSTIEHRMHHPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPE 166
+ V + A + E L L
Sbjct: 62 PSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKG 121
Query: 167 GIDSTIEHRMNHPVVHVSWNDAVAYCTWRGARLPTEAEWEYGCRG-GLEN-----RLFPW 220
G + + ++ AR + E R G E LF
Sbjct: 122 GYLIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQTLFKH 181
Query: 221 GNNLTPRGEHRANVWQGEF 239
+ L+ + +G F
Sbjct: 182 PSELSEIEPVKEGYGEGAF 200
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus
aureus [TaxId: 1280]}
Length = 122
Score = 26.3 bits (58), Expect = 3.6
Identities = 3/35 (8%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 70 VTEAEKFGDTFVFEPLLSEEERAKISQVRHDMKRF 104
+ + K + + + + E++ K+ + + +
Sbjct: 53 IIKRYKSENIYFYSSNIKEDD-IKMKTAKTFLNKL 86
>d1qk1a2 d.128.1.2 (A:103-379) Creatine kinase, C-terminal domain
{Human (Homo sapiens), mitochondria [TaxId: 9606]}
Length = 277
Score = 26.4 bits (58), Expect = 5.9
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 80 FVFEPLLSEEERAKI-SQVRHDMKRFEGLDSTIEHRMHH 117
P + ER ++ V + +G + +R+
Sbjct: 33 LSLPPACTRAERREVERVVVDALSGLKGDLAGRYYRLSE 71
>d1r13a1 d.169.1.1 (A:110-228) Surfactant protein, lectin domain
{Rat (Rattus norvegicus), SP-A [TaxId: 10116]}
Length = 119
Score = 25.8 bits (55), Expect = 6.2
Identities = 6/64 (9%), Positives = 15/64 (23%)
Query: 123 SWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVH 182
+++ CT G + E + + +L + +
Sbjct: 18 NFDTIKEMCTRAGGNIAVPRTPEENEAIASIAKKYNNYVYLGMIEDQTPGDFHYLDGASV 77
Query: 183 VSWN 186
N
Sbjct: 78 SYTN 81
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 26.2 bits (57), Expect = 6.3
Identities = 6/55 (10%), Positives = 11/55 (20%), Gaps = 8/55 (14%)
Query: 282 VHHHPAPSYNPKGPTTGTDKVKKGGSYLCNEQYCYRHRCAARSQNTPDSSAGNLG 336
+ HH G + + + P + LG
Sbjct: 61 IVHHGYFWKGESPVIRGM--------KRNRLKTLLANDINLYGWHLPLDAHPELG 107
>d3c8ja1 d.169.1.1 (A:138-259) NK cell receptor {Mouse (Mus
musculus), ly49-c [TaxId: 10090]}
Length = 122
Score = 25.6 bits (55), Expect = 6.7
Identities = 6/53 (11%), Positives = 15/53 (28%)
Query: 183 VSWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGNNLTPRGEHRANVW 235
+W+ A C G + + + + L+ + + W
Sbjct: 21 TTWSGCKANCQHYGVPILKIEDEDELKFLQRHVIPGNYWIGLSYDKKKKEWAW 73
>d1uwya2 c.56.5.1 (A:1-296) Carboxypeptidase M, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 296
Score = 26.3 bits (57), Expect = 7.2
Identities = 29/193 (15%), Positives = 47/193 (24%), Gaps = 19/193 (9%)
Query: 117 HPVVHISWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRM 176
V + Y + P R + + P G + R
Sbjct: 69 ETVGRELLLHLIDYLVTSDGKDPEITNLINSTRIHIMPSMNPDGFEAVKKPDCYYSIGRE 128
Query: 177 NHPVVHVSWNDAVAYCTWRGARLPTEAEWE-----------YGCRGGLENRLFPWGNNLT 225
N+ ++ N A+ +R P GG +P+ N +
Sbjct: 129 NYNQYDLNRNFPDAFEYNNVSRQPETVAVMKWLKTETFVLSANLHGGALVASYPFDNGVQ 188
Query: 226 PRGEHRANVWQGEFPTNNTAADGYLSTAPVMS---YKENKFGLYNMVGNVWEW-----TA 277
G + + A Y S P M +NK N V N + W
Sbjct: 189 ATGALYSRSLTPDDDVFQYLAHTYASRNPNMKKGDECKNKMNFPNGVTNGYSWYPLQGGM 248
Query: 278 DWWNVHHHPAPSY 290
+N
Sbjct: 249 QDYNYIWAQCFEI 261
>d1auga_ c.56.4.1 (A:) Pyrrolidone carboxyl peptidase (pyroglutamate
aminopeptidase) {Bacillus amyloliquefaciens [TaxId:
1390]}
Length = 210
Score = 25.8 bits (56), Expect = 8.1
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 305 GGSYLCNEQYCYRHRCAARSQNTPDSSAG 333
G+++CN + + S++ P G
Sbjct: 139 AGTFVCN--HLFYGLMDEISRHHPHIRGG 165
Score = 25.8 bits (56), Expect = 8.1
Identities = 6/29 (20%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 355 GGSYLCNEQYCYRHRCAARSQNTPDSSAG 383
G+++CN + + S++ P G
Sbjct: 139 AGTFVCN--HLFYGLMDEISRHHPHIRGG 165
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas
viridis [TaxId: 1079]}
Length = 323
Score = 25.9 bits (57), Expect = 8.5
Identities = 9/28 (32%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 270 GNVWEWTADWWNVHHHPAPSYNPKGPTT 297
G + W V H AP Y P T
Sbjct: 286 GTFVDNWYLWC-VKHGAAPDYPAYLPAT 312
>d1ypqa1 d.169.1.1 (A:140-270) Oxidised low density lipoprotein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 131
Score = 25.3 bits (54), Expect = 9.4
Identities = 9/89 (10%), Positives = 19/89 (21%), Gaps = 11/89 (12%)
Query: 123 SWNDAVAYCTWRGARLPTEAEWEYGCRGGLENRLFPWGSWLHPEGIDSTIEHRMNHPVVH 182
+W + C A+L + + +P
Sbjct: 25 NWEKSQEKCLSLDAKLLKINSTADLDFI---------QQAISYSSFPFWMGLSRRNPSYP 75
Query: 183 VSWND--AVAYCTWRGARLPTEAEWEYGC 209
W D + +R ++ C
Sbjct: 76 WLWEDGSPLMPHLFRVRGAVSQTYPSGTC 104
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.450
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,622,086
Number of extensions: 78498
Number of successful extensions: 316
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 70
Length of query: 394
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 307
Effective length of database: 1,213,086
Effective search space: 372417402
Effective search space used: 372417402
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.2 bits)