BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8679
(221 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6DFH9|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus
laevis GN=nip7 PE=2 SV=1
Length = 180
Score = 249 bits (637), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 135/160 (84%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N+KLL+DRPDGTYCFR DRV+YVSEKIL LA N D L++ GTCFGKFTK+ KF
Sbjct: 20 IGENIKLLVDRPDGTYCFRLHNDRVYYVSEKILKLATNIARDKLVSFGTCFGKFTKTQKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct: 80 RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADV 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST EC+ DP+AIV F+Q+D+GEYIR ED L
Sbjct: 140 PLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179
>sp|A4QND5|NIP7_XENTR 60S ribosome subunit biogenesis protein NIP7 homolog OS=Xenopus
tropicalis GN=nip7 PE=2 SV=1
Length = 180
Score = 249 bits (637), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 114/160 (71%), Positives = 136/160 (85%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N+KLL+DRPDGTYCFR DRV+YVSE+IL LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENIKLLVDRPDGTYCFRLHNDRVYYVSERILKLATNIARDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80 RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST EC+ DP+AIV F+Q+D+GEYIR ED L
Sbjct: 140 PLGFGVAAKSTQECRKLDPMAIVVFHQADVGEYIRHEDTL 179
>sp|Q503P2|NIP7_DANRE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Danio rerio
GN=nip7 PE=2 SV=1
Length = 180
Score = 248 bits (634), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 115/160 (71%), Positives = 136/160 (85%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N+KLLIDRPDGTYCFR DRV+Y+SEKIL LA N D L+++GTCFGKFTK+ KF
Sbjct: 20 IGENIKLLIDRPDGTYCFRLHNDRVYYMSEKILKLATNVSRDKLVSVGTCFGKFTKTQKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLHITAL +LAPYA+FKVWVKP +EQ FLYG++I+KSGL RITENT KYQGV+V +M DV
Sbjct: 80 RLHITALDFLAPYAKFKVWVKPGSEQSFLYGNHIMKSGLGRITENTDKYQGVLVYSMADV 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAA++T EC+ DP+AIV F+Q+DIGEYIR ED L
Sbjct: 140 PLGFGVAARTTQECRKVDPMAIVVFHQADIGEYIRSEDTL 179
>sp|Q56P27|NIP7_PIG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Sus scrofa
GN=NIP7 PE=2 SV=1
Length = 180
Score = 246 bits (628), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 112/160 (70%), Positives = 136/160 (85%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N++LL+DRPDGTYCFR DRV+YVSEKIL LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKILKLAANISGDKLMSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLHITAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80 RLHITALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST +C+ DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>sp|Q4T2X8|NIP7_TETNG 60S ribosome subunit biogenesis protein NIP7 homolog OS=Tetraodon
nigroviridis GN=nip7 PE=3 SV=1
Length = 180
Score = 245 bits (625), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 135/160 (84%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N+KLL+DRPDGTYCFR DRV+Y+SE+IL LA N L+++GTCFGKFTK+ KF
Sbjct: 20 IGENIKLLVDRPDGTYCFRLHNDRVYYMSERILKLATNIARQKLVSVGTCFGKFTKTSKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLHITAL +LAPYA+FKVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct: 80 RLHITALDFLAPYAKFKVWVKPGAEQSFLYGNHVLKSGLGRITENTAQYQGVVVYSMADV 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST EC+ DP++IV F+Q+D+GE+IR ED L
Sbjct: 140 PLGFGVAAKSTQECRRVDPMSIVVFHQADVGEFIRNEDSL 179
>sp|Q5R9J1|NIP7_PONAB 60S ribosome subunit biogenesis protein NIP7 homolog OS=Pongo
abelii GN=NIP7 PE=2 SV=1
Length = 180
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 136/160 (85%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N++LL+DRPDGTYCFR DRV+YVSEKI+ LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80 RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST +C+ DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>sp|Q9Y221|NIP7_HUMAN 60S ribosome subunit biogenesis protein NIP7 homolog OS=Homo
sapiens GN=NIP7 PE=1 SV=1
Length = 180
Score = 244 bits (624), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 136/160 (85%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N++LL+DRPDGTYCFR DRV+YVSEKI+ LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLH+TAL YLAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80 RLHVTALDYLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST +C+ DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>sp|Q9CXK8|NIP7_MOUSE 60S ribosome subunit biogenesis protein NIP7 homolog OS=Mus
musculus GN=Nip7 PE=2 SV=1
Length = 180
Score = 242 bits (618), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 110/160 (68%), Positives = 135/160 (84%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N++LL+DRPDGTYCFR DRV+YVSE +L LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEMMLKLAANISGDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLH+TAL YLAPYA++KVWVKP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+
Sbjct: 80 RLHVTALDYLAPYAKYKVWVKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADI 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST +C+ DP+AIV F+Q+DIGEY+R E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYVRHEETL 179
>sp|Q9WV50|NIP7_RAT 60S ribosome subunit biogenesis protein NIP7 homolog OS=Rattus
norvegicus GN=Nip7 PE=2 SV=1
Length = 180
Score = 242 bits (617), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 111/160 (69%), Positives = 135/160 (84%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N++LL+DRPDGTYCFR DRV+YVSE IL LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEMILKLAANISGDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLH+TAL +LAPYA++KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M DV
Sbjct: 80 RLHVTALDFLAPYAKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADV 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGVAAKST +C+ DP+AIV F+Q+DIGEYIR E+ L
Sbjct: 140 PLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYIRHEETL 179
>sp|Q1MTQ9|NIP7_SCHPO 60S ribosome subunit biogenesis protein nip7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=nip7 PE=3 SV=1
Length = 180
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 89/160 (55%), Positives = 124/160 (77%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N+ LIDRPD +CFR +DRV+YVSE+ + +A + +L++LG CFGKFTK+ KF
Sbjct: 20 IGKNITHLIDRPDDPHCFRLQKDRVYYVSERAMKMATSVARQNLMSLGICFGKFTKTNKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
RLHITAL Y+A YA++K+WVK E FLYG+++LK+ + RIT++TP++QGV++ +MND
Sbjct: 80 RLHITALDYIAQYARYKIWVKSNGEMPFLYGNHVLKAHVGRITDDTPQHQGVVIYSMNDT 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
PLGFGV A+ST E + +P AIV F+Q+D+GEY+R ED L
Sbjct: 140 PLGFGVTARSTLELRRLEPTAIVAFHQADVGEYLRDEDTL 179
>sp|B0G104|NIP7_DICDI 60S ribosome subunit biogenesis protein NIP7 homolog
OS=Dictyostelium discoideum GN=nip7 PE=3 SV=1
Length = 179
Score = 200 bits (508), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 89/158 (56%), Positives = 124/158 (78%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG NV LLI R D YCFR +++V+YVSE+++ ++N + L +LGTCFG+FTK+GKF
Sbjct: 20 IGKNVTLLIQRKDEPYCFRIQKNKVYYVSEELMKRSQNIPREGLCSLGTCFGRFTKTGKF 79
Query: 121 RLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 180
+L+IT L YLA YA++KVWVKP +E ++YG+N+LK+GL RITE+TP QGV++ +MNDV
Sbjct: 80 KLNITCLDYLAQYAKYKVWVKPSSEMSWMYGNNLLKAGLGRITEDTPANQGVVLFSMNDV 139
Query: 181 PLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCED 218
P+GFGV +KST EC+ DP A+V ++ D+GEY+R ED
Sbjct: 140 PIGFGVTSKSTHECRKLDPQALVVYHYGDVGEYLRDED 177
>sp|Q08962|NIP7_YEAST 60S ribosome subunit biogenesis protein NIP7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NIP7 PE=1
SV=1
Length = 181
Score = 184 bits (466), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 81/162 (50%), Positives = 118/162 (72%)
Query: 59 GNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSG 118
G IG N+ L+D + + FR +DRV+YV + + LA + +L++LG C GKFTK+G
Sbjct: 18 GYIGRNISFLVDNKELPHVFRLQKDRVYYVPDHVAKLATSVARPNLMSLGICLGKFTKTG 77
Query: 119 KFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN 178
KFRLHIT+L+ LA +A++K+W+KP E FLYG+++LK+ + +++++ P++ GVIV MN
Sbjct: 78 KFRLHITSLTVLAKHAKYKIWIKPNGEMPFLYGNHVLKAHVGKMSDDIPEHAGVIVFAMN 137
Query: 179 DVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
DVPLGFGV+AKST+E + P IV F Q+DIGEY+R ED L
Sbjct: 138 DVPLGFGVSAKSTSESRNMQPTGIVAFRQADIGEYLRDEDTL 179
>sp|O30178|Y058_ARCFU UPF0113 protein AF_0058 OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0058 PE=3 SV=1
Length = 174
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Query: 119 KFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMN 178
+FR + +L ++ +VWV + E FLYG +I + R +E + V V N
Sbjct: 71 RFRFSLEGTFWLLRNSRNRVWVNERGEMLFLYGRDIFAGSVERASE-FGENSIVFVCNRF 129
Query: 179 DVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCE 217
D LG G + S+ E + N D GEY+R +
Sbjct: 130 DDVLGIGRSRHSSDELSNLPEDKVFVENLVDRGEYLRHQ 168
>sp|Q9VEN1|FLNA_DROME Filamin-A OS=Drosophila melanogaster GN=cher PE=1 SV=2
Length = 2210
Score = 33.9 bits (76), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 50/113 (44%), Gaps = 15/113 (13%)
Query: 115 TKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIV 174
TK G++ + +T + F+V V P+ E + L SG+ Y V
Sbjct: 519 TKEGRYVIMVTFAGQEVAKSPFEVKVGPKKESSIVAYGPGLSSGVI-------GYPAAFV 571
Query: 175 LNMNDV--PLGFGVAAKSTAECKL---ADPLAIVGFNQSDIGEY---IRCEDE 219
+ N LGF VA S AE + D A+V ++ + +GEY I C++E
Sbjct: 572 VETNGETGALGFTVAGPSQAEIECHDNGDGSALVKYHPTAVGEYAVHILCDNE 624
>sp|Q8CNV9|FTHS_STAES Formate--tetrahydrofolate ligase OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=fhs PE=3 SV=1
Length = 555
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 122 LHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVP 181
L I LS L P ++ V + YGH K + +I E K + V+V M+ P
Sbjct: 7 LEIANLSKLKPISEIARKVGITEDALEPYGHYKAKIDINQIQEQEKKGKVVLVTAMSPTP 66
Query: 182 LGFGVAAKSTAECKLAD 198
G G KST LAD
Sbjct: 67 AGEG---KSTVTVGLAD 80
>sp|Q5HNH4|FTHS_STAEQ Formate--tetrahydrofolate ligase OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=fhs PE=3 SV=1
Length = 555
Score = 32.7 bits (73), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 122 LHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVP 181
L I LS L P ++ V + YGH K + +I E K + V+V M+ P
Sbjct: 7 LEIANLSKLKPISEIARKVGITEDALEPYGHYKAKIDINQIQEQEKKGKVVLVTAMSPTP 66
Query: 182 LGFGVAAKSTAECKLAD 198
G G KST LAD
Sbjct: 67 AGEG---KSTVTVGLAD 80
>sp|B6YUR8|ATGT_THEON tRNA-guanine(15) transglycosylase OS=Thermococcus onnurineus
(strain NA1) GN=tgtA PE=3 SV=1
Length = 580
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 38/95 (40%), Gaps = 12/95 (12%)
Query: 102 DHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLAR 161
D LL LG G RLH + P+ + +V V AE G N+ +
Sbjct: 483 DGLLTLGI-------EGAKRLH-----EILPFPRMRVVVDEDAEPFARKGKNVFAKFVID 530
Query: 162 ITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKL 196
EN Y V+++N ND L G + E KL
Sbjct: 531 ADENIRPYDEVLIVNRNDELLATGQTLLNGRELKL 565
>sp|P21885|SPEA_BACSU Arginine decarboxylase OS=Bacillus subtilis (strain 168) GN=speA
PE=1 SV=2
Length = 490
Score = 31.6 bits (70), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/99 (22%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Query: 122 LHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVP 181
+H + ++ + +++ P+ + + H I R P +G++V+N P
Sbjct: 114 VHKSIMTAIVFSGAVPIFIHPEIDNELGISHGITLESAKRALTEHPDAKGLLVIN----P 169
Query: 182 LGFGVAAKSTAECKLADPLAIVGFNQSDIGEYIRCEDEL 220
FGVAA + +LA + G +I DEL
Sbjct: 170 TYFGVAADLKSIVELAHSFDVPVLVDEAHGVHIHFHDEL 208
>sp|Q57878|ATGT_METJA tRNA-guanine(15) transglycosylase OS=Methanocaldococcus jannaschii
(strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC
100440) GN=tgtA PE=1 SV=2
Length = 655
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 132 PYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST 191
P+ +++V V +AE+ G N+ + E Y+ V+V+N +D L +G +
Sbjct: 574 PFPKYRVVVNKEAEEFAREGRNVFAKFVIDCDEELRPYEEVLVVNEDDELLAYGTTILNG 633
Query: 192 AECK 195
E +
Sbjct: 634 IELR 637
>sp|Q8LGM7|MOCOS_SOLLC Molybdenum cofactor sulfurase OS=Solanum lycopersicum GN=FLACCA
PE=2 SV=1
Length = 816
Score = 30.8 bits (68), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 9/73 (12%)
Query: 25 FREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGT-YCFREMRD 83
FR YV K+L L G G +G V + RPDGT Y +RE+
Sbjct: 353 FRHTTSIAAYVRNKLLALKHENGEFVCTLYGLLSSEMGPTVSFNMKRPDGTWYGYREV-- 410
Query: 84 RVFYVSEKILTLA 96
EK+ TLA
Sbjct: 411 ------EKLATLA 417
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.142 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 85,423,041
Number of Sequences: 539616
Number of extensions: 3553149
Number of successful extensions: 7082
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 7054
Number of HSP's gapped (non-prelim): 34
length of query: 221
length of database: 191,569,459
effective HSP length: 113
effective length of query: 108
effective length of database: 130,592,851
effective search space: 14104027908
effective search space used: 14104027908
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)