Query psy8679
Match_columns 221
No_of_seqs 209 out of 290
Neff 4.1
Searched_HMMs 29240
Date Sat Aug 17 00:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8679.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8679hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sqw_A Saccharomyces cerevisia 100.0 1.3E-75 4.3E-80 499.6 8.3 166 55-220 14-179 (188)
2 2p38_A Protein involved in rib 100.0 6.3E-53 2.2E-57 352.2 7.6 141 57-216 22-166 (166)
3 1sqw_A Saccharomyces cerevisia 99.8 7.3E-22 2.5E-26 168.4 0.2 62 3-64 15-76 (188)
4 1q7h_A Conserved hypothetical 99.7 1.7E-17 5.9E-22 134.1 10.4 116 69-206 25-140 (153)
5 2p38_A Protein involved in rib 99.0 2.4E-10 8.2E-15 95.2 3.2 80 2-93 20-105 (166)
6 2q07_A Uncharacterized protein 98.0 1.9E-05 6.6E-10 71.0 8.3 100 99-206 193-293 (306)
7 3d79_A PUA domain, putative un 97.6 0.00019 6.5E-09 59.4 8.5 89 114-204 68-163 (179)
8 2cx0_A Hypothetical protein AP 97.4 0.00023 8E-09 59.5 6.2 77 117-194 73-152 (187)
9 3zv0_C H/ACA ribonucleoprotein 97.4 0.0002 7E-09 61.3 5.7 78 136-214 76-156 (195)
10 1iq8_A Archaeosine tRNA-guanin 97.4 0.0004 1.4E-08 67.2 8.0 98 108-206 476-577 (582)
11 3r90_A Malignant T cell-amplif 97.2 0.00031 1.1E-08 59.1 5.0 87 118-206 76-166 (188)
12 3u28_A H/ACA ribonucleoprotein 96.0 0.0068 2.3E-07 56.7 5.2 77 136-213 267-346 (400)
13 3m4x_A NOL1/NOP2/SUN family pr 95.3 0.034 1.2E-06 52.1 7.1 98 76-188 343-441 (456)
14 2frx_A Hypothetical protein YE 94.9 0.055 1.9E-06 50.6 7.2 103 76-190 355-458 (479)
15 3m6w_A RRNA methylase; rRNA me 94.0 0.045 1.6E-06 51.4 4.5 100 76-189 336-446 (464)
16 2aus_C Pseudouridine synthase; 90.0 0.46 1.6E-05 43.0 5.9 65 136-200 251-315 (334)
17 2apo_A Probable tRNA pseudouri 89.4 0.51 1.7E-05 43.4 5.7 65 136-200 270-334 (357)
18 3c0k_A UPF0064 protein YCCW; P 87.7 0.62 2.1E-05 41.5 5.0 55 137-191 4-59 (396)
19 2j5v_A Glutamate 5-kinase; pro 87.5 0.44 1.5E-05 43.3 4.0 65 135-199 275-340 (367)
20 4dmg_A Putative uncharacterize 66.1 5.6 0.00019 36.0 4.3 51 136-189 6-57 (393)
21 1q7h_A Conserved hypothetical 59.7 4.8 0.00017 31.6 2.4 28 3-36 18-45 (153)
22 2as0_A Hypothetical protein PH 57.0 8.5 0.00029 34.0 3.8 55 137-191 3-58 (396)
23 2dtc_A RAL guanine nucleotide 40.5 19 0.00063 28.1 2.9 27 9-36 64-93 (126)
24 2coc_A FYVE, rhogef and PH dom 27.3 49 0.0017 24.6 3.2 18 19-36 69-87 (112)
25 3gdi_A Period circadian protei 26.7 40 0.0014 29.5 3.0 49 14-73 19-69 (309)
26 4dj2_A Period circadian protei 22.1 50 0.0017 29.0 2.8 40 10-51 21-67 (320)
27 4dj3_A Period circadian protei 20.9 71 0.0024 28.0 3.5 47 16-73 32-80 (317)
No 1
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=100.00 E-value=1.3e-75 Score=499.59 Aligned_cols=166 Identities=66% Similarity=1.151 Sum_probs=161.0
Q ss_pred ceecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccC
Q psy8679 55 GTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYA 134 (221)
Q Consensus 55 Gtc~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~a 134 (221)
-++++|||+|++.|++|||++||||+||+||||||++|++.|++|+|++|+|+|||||||||+|||+|||||+++|||||
T Consensus 14 ~kL~~yiG~n~~~li~~~~~~~~frl~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkftk~gkF~L~It~l~~La~~~ 93 (188)
T 1sqw_A 14 EKIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYA 93 (188)
T ss_dssp HHHHHHHGGGTHHHHEETTEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTTSCEEECGGGHHHHGGGC
T ss_pred HHHHHHhccCHHHHhcCCCCceEEEecCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEecCCcEEEchhHHHHhhhcc
Confidence 35779999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEecccceeee
Q psy8679 135 QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGEYI 214 (221)
Q Consensus 135 k~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~GeYL 214 (221)
+|||||||+|||+|||||||+|+||+||||++|+++||||+||||+|||||++|+||+||+.+||+++||+||+|+||||
T Consensus 94 ~~kV~Vk~~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~vv~~q~D~GeYL 173 (188)
T 1sqw_A 94 KYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAIVVFHQADIGEYV 173 (188)
T ss_dssp SCEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSEEEEEEEEGGGTC
T ss_pred CcEEEECCCceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcEEEEEcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccc
Q psy8679 215 RCEDEL 220 (221)
Q Consensus 215 R~E~~l 220 (221)
|+||+|
T Consensus 174 R~e~~~ 179 (188)
T 1sqw_A 174 RHEETL 179 (188)
T ss_dssp SCC---
T ss_pred EcCcee
Confidence 999987
No 2
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=100.00 E-value=6.3e-53 Score=352.23 Aligned_cols=141 Identities=21% Similarity=0.203 Sum_probs=127.5
Q ss_pred ecccccccccccccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeee----eecceEEEEeeehhhhcc
Q psy8679 57 CFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKF----TKSGKFRLHITALSYLAP 132 (221)
Q Consensus 57 c~GyiG~ni~~li~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkF----tKs~kFrl~ItaL~~La~ 132 (221)
+..|+|.|. |+.+|||+|++|||||++++++.|+++ |++|+|+||||||| ||++||+|||||+++| +
T Consensus 22 L~~y~~~~~-------~~~~~~~~~~~~Vy~v~~~~~~~~~~~-~~~l~s~G~~~Gk~~~~~t~~~kf~pti~~l~~l-~ 92 (166)
T 2p38_A 22 AEKYGELLH-------EFFCVVEGKYRDVYAVNEEVWKIIEDI-NMRPYSLGTFVGTIRVDENLVEKFYPNLEFFSLI-K 92 (166)
T ss_dssp HHTTEEECC-------CCEEEEESSSEEEEEECHHHHHHTTTC-CCCGGGTEEEEEEEEECTTSCEEEEECHHHHTTE-E
T ss_pred HHHhcCCCc-------ccEEEEEccCcEEEEECcHHHHHhhcc-CccceEEEEEEEEEEecccCCCeEEEehHHhhhc-c
Confidence 456665442 678999999999999999999999999 99999999999999 8899999999999999 9
Q ss_pred cCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEeccccee
Q psy8679 133 YAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQSDIGE 212 (221)
Q Consensus 133 ~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~qaD~Ge 212 (221)
+++|||||+|+|||+||||+||+|+||.++| +|++++|||+||+|.|||||++++| |+++||+||+|+||
T Consensus 93 ~~k~kV~V~~~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~~~~~~pLG~G~a~~s--------~~gkvv~n~~dvGe 162 (166)
T 2p38_A 93 LEKNYVILGPKASFLFTTGKDAPKEAVREIK--WQGSKRVVVLNDLGDIIGIGLINPK--------SDRRFIKNLKDVGE 162 (166)
T ss_dssp ECSSEEEECHHHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEECTTSCEEEEEEECTT--------CSTTSEEEEEC---
T ss_pred ccccEEEECCcceEeeecCCCcchhcceEEe--ecCCCEEEEEECCCcEEEEEEEEEC--------CCCEEEEEccccee
Confidence 9999999999999999999999999999999 9999999999999999999999988 89999999999999
Q ss_pred eecc
Q psy8679 213 YIRC 216 (221)
Q Consensus 213 YLR~ 216 (221)
|||+
T Consensus 163 YLR~ 166 (166)
T 2p38_A 163 FLRR 166 (166)
T ss_dssp ----
T ss_pred eecC
Confidence 9995
No 3
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=99.82 E-value=7.3e-22 Score=168.44 Aligned_cols=62 Identities=56% Similarity=1.056 Sum_probs=59.5
Q ss_pred cccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceeccccccc
Q psy8679 3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSN 64 (221)
Q Consensus 3 ~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~n 64 (221)
.+++|||+|+++||+|||++|||||||+|||||||+|+++|+||+|++|+|+|||+|-+.+.
T Consensus 15 kL~~yiG~n~~~li~~~~~~~~frl~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkftk~ 76 (188)
T 1sqw_A 15 KIAKYIGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKT 76 (188)
T ss_dssp HHHHHHGGGTHHHHEETTEEEEEEEETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTT
T ss_pred HHHHHhccCHHHHhcCCCCceEEEecCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEecC
Confidence 47899999999999999999999999999999999999999999999999999999999753
No 4
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=99.72 E-value=1.7e-17 Score=134.08 Aligned_cols=116 Identities=16% Similarity=0.191 Sum_probs=103.6
Q ss_pred ccCCCCeeEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccCcceEEEccCcccee
Q psy8679 69 IDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQAEQQF 148 (221)
Q Consensus 69 i~~~d~~y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~F 148 (221)
+...+..+++|.++.++||++ |.+++ |+ +|+|++|++++..+ |+++.+|||++.+++.+
T Consensus 25 ~~~~~~~~~~k~~~~~~~~v~------------------g~~l~-f~-~g~~~ptl~~l~~l-~~~~~~v~vd~ga~~~l 83 (153)
T 1q7h_A 25 DITGESLEVAAQKSASAYYIG------------------GKPMV-FQ-AGDLIPSVYLLNYR-NPSRNIVTVDEGAEPHI 83 (153)
T ss_dssp CCTTCCCEEEECSSCEEEEET------------------TEEEE-EE-SSSEEECHHHHHHS-CCSSSEEEECTTTHHHH
T ss_pred ccCCCcEEEEEeCCcEEEEEC------------------CEEEE-EE-CCeeeeehHHHhhC-CccCCEEEECHhHHHHH
Confidence 334567799999999999996 44666 88 89999999999998 78999999999999999
Q ss_pred ecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe
Q psy8679 149 LYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN 206 (221)
Q Consensus 149 LYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~ 206 (221)
++|.+++..||.++++++++++.|+|+++++.|+|+|+++.|++|+++.+ .|++|..
T Consensus 84 ~~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss~e~~~~~-~G~~v~v 140 (153)
T 1q7h_A 84 LNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATK-RGKAARI 140 (153)
T ss_dssp TTTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHHC-CSEEEEE
T ss_pred HcCCCcCccccCcccCceeCCCEEEEEECCCCEEEEEEEecCHHHHHhcC-CCeEEEE
Confidence 99999999999999999999999999999999999999999999999864 4555544
No 5
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=98.96 E-value=2.4e-10 Score=95.15 Aligned_cols=80 Identities=14% Similarity=0.064 Sum_probs=58.2
Q ss_pred ccccccccccccccccCCCCceeEEEeCCeEEEEcHHHHhhhcccCcccceecceecccc------cccccccccCCCCe
Q psy8679 2 NQVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGNI------GSNVKLLIDRPDGT 75 (221)
Q Consensus 2 ~~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvse~i~k~At~i~r~~L~slGtc~Gyi------G~ni~~li~~~d~~ 75 (221)
+.+++|+|.|. |..+|||+|++|||||+++++++|+++ |++|+|+|||+|-+ ++.+...|. +.
T Consensus 20 ~~L~~y~~~~~-------~~~~~~~~~~~~Vy~v~~~~~~~~~~~-~~~l~s~G~~~Gk~~~~~t~~~kf~pti~---~l 88 (166)
T 2p38_A 20 KEAEKYGELLH-------EFFCVVEGKYRDVYAVNEEVWKIIEDI-NMRPYSLGTFVGTIRVDENLVEKFYPNLE---FF 88 (166)
T ss_dssp HHHHTTEEECC-------CCEEEEESSSEEEEEECHHHHHHTTTC-CCCGGGTEEEEEEEEECTTSCEEEEECHH---HH
T ss_pred HHHHHhcCCCc-------ccEEEEEccCcEEEEECcHHHHHhhcc-CccceEEEEEEEEEEecccCCCeEEEehH---Hh
Confidence 35678877553 677999999999999999999999999 99999999999998 333333332 11
Q ss_pred eEEEeeCcEEEEEcHHHH
Q psy8679 76 YCFREMRDRVFYVSEKIL 93 (221)
Q Consensus 76 y~frlhk~rVyYvs~~l~ 93 (221)
+.....+.+| .|++.-.
T Consensus 89 ~~l~~~k~kV-~V~~~ae 105 (166)
T 2p38_A 89 SLIKLEKNYV-ILGPKAS 105 (166)
T ss_dssp TTEEECSSEE-EECHHHH
T ss_pred hhccccccEE-EECCcce
Confidence 1224445566 4666543
No 6
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=97.96 E-value=1.9e-05 Score=71.04 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=83.5
Q ss_pred cCCCCeeeeeeeeeeee-ecceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEec
Q psy8679 99 FGPDHLLALGTCFGKFT-KSGKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM 177 (221)
Q Consensus 99 i~r~~L~S~Gtc~GkFt-Ks~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~ 177 (221)
++|+.++.=|..++-|. ..|.|.+++.|...|.++.+++|+|+. |+-+.+|+.-||...++++..++-|+| .
T Consensus 193 ~p~~~v~vdg~~l~~~~~~dg~~~ptl~Ga~~l~~~~~~~V~Vd~-----~v~~G~v~~pGv~~~~~~i~~gd~V~V--~ 265 (306)
T 2q07_A 193 YPELELLEGKKRLARVDRIYGMLDIYEKIAAYLLEKNIYTVEIGD-----FEVKGTIFAGGVLRADEKIRPNDVVVF--H 265 (306)
T ss_dssp TTSCEEEETTEEEEEEETTTTEEEECHHHHHHHHHTTCSEEEECS-----SCCCSEEEGGGEEEECTTCCTTCEEEE--E
T ss_pred CceEEEEECCEEEEEEEccCCeEEEcHHHHHHhhhCCCCEEEEcc-----cccCCceeCCeeEeCCCCcCCCCEEEE--E
Confidence 44566676789999775 578999999999999887789999997 654449999999999999999999999 7
Q ss_pred CCCeeeEEeeeechhHhhhcCCCcEEEEe
Q psy8679 178 NDVPLGFGVAAKSTAECKLADPLAIVGFN 206 (221)
Q Consensus 178 nd~pLGFGv~akst~~~~~~dp~~ivv~~ 206 (221)
++.++|.|.+.-|++|++..+. |++|..
T Consensus 266 ~g~~vavG~a~ms~~em~~~~k-G~aV~v 293 (306)
T 2q07_A 266 NSRIFGVGLAAMSGKEMAGSEK-GIAINV 293 (306)
T ss_dssp CSSCEEEEEESSCHHHHSCC---CEEEEE
T ss_pred CCEEEEEEEEeeCHHHHhhcCC-ceEEEE
Confidence 7999999999999999998875 555543
No 7
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=97.63 E-value=0.00019 Score=59.44 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=76.0
Q ss_pred eeecceEEEEeeehhhhcccCc------ceEEEccCccceeecccccccccceeecccCCCcceEEEEec-CCCeeeEEe
Q psy8679 114 FTKSGKFRLHITALSYLAPYAQ------FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM-NDVPLGFGV 186 (221)
Q Consensus 114 FtKs~kFrl~ItaL~~La~~ak------~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~-nd~pLGFGv 186 (221)
|...+.|-+++.++..+-+ .. .+|+|.+.++.--+.|.+++-.||..++.++.+++-|.|++. ++.++|.|.
T Consensus 68 f~~dg~l~PTl~~l~~~p~-~~p~~~~~~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g~~iavG~ 146 (179)
T 3d79_A 68 IRRKDLIFPLVIALYNLSD-EEDLRKWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYGRPLAIGI 146 (179)
T ss_dssp EEETTEEEECHHHHHHHTT-TSCGGGSTTEEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTCCEEEEEE
T ss_pred EEeCCeEeehHHHHHhCch-hccccccCCEEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCCeEEEEEE
Confidence 3346899999999887643 44 799999998877779999999999999999999999999998 799999999
Q ss_pred eeechhHhhhcCCCcEEE
Q psy8679 187 AAKSTAECKLADPLAIVG 204 (221)
Q Consensus 187 ~akst~~~~~~dp~~ivv 204 (221)
+.-|++|++..+. |++|
T Consensus 147 ~~~ss~e~~~~~k-G~av 163 (179)
T 3d79_A 147 ALMSGKVMKEKNR-GKAV 163 (179)
T ss_dssp ESSCHHHHHHCSS-SEEE
T ss_pred EEcCHHHHHhcCC-ceEE
Confidence 9999999987554 4444
No 8
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=97.40 E-value=0.00023 Score=59.53 Aligned_cols=77 Identities=17% Similarity=0.207 Sum_probs=69.8
Q ss_pred cceEEEEeeehhhhcccC--cceEEEccCccceeecccccccccceeecccCCCcceEEEEec-CCCeeeEEeeeechhH
Q psy8679 117 SGKFRLHITALSYLAPYA--QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM-NDVPLGFGVAAKSTAE 193 (221)
Q Consensus 117 s~kFrl~ItaL~~La~~a--k~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~-nd~pLGFGv~akst~~ 193 (221)
.+.|.+++.++.-+ |.. +.+|+|.+.+...-+.|.+++-.||..+..++.+++-|.|.+. ++.|+|.|.+.-|+.|
T Consensus 73 dg~l~PTl~~l~~~-p~~~l~g~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~e 151 (187)
T 2cx0_A 73 DGRIYPTLQCLKAF-GVDWLKGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSA 151 (187)
T ss_dssp TSCEEECHHHHHHH-CSTTSSEEEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEESSCHHH
T ss_pred CCeEEEEHHHHHhC-CcccCCcEEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEECCCCeEEEEEEEecCHHH
Confidence 68999999999664 555 6699999988876679999999999999999999999999999 7999999999999999
Q ss_pred h
Q psy8679 194 C 194 (221)
Q Consensus 194 ~ 194 (221)
+
T Consensus 152 i 152 (187)
T 2cx0_A 152 L 152 (187)
T ss_dssp H
T ss_pred H
Confidence 9
No 9
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=97.38 E-value=0.0002 Score=61.29 Aligned_cols=78 Identities=21% Similarity=0.311 Sum_probs=69.8
Q ss_pred ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe---ccccee
Q psy8679 136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN---QSDIGE 212 (221)
Q Consensus 136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~---qaD~Ge 212 (221)
-+|.|++.+....+.|.+++-.||.+++.++..++-|.|++.++.++|.|.+..|++|++..+ .|++|.. ..|.|-
T Consensus 76 g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS~Ei~~~~-kG~aVkv~rVimd~~~ 154 (195)
T 3zv0_C 76 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCD-HGVVASVKRCIMERDL 154 (195)
T ss_dssp EEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCS-SSEEEEEEEECBCTTS
T ss_pred CeEEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEEEEcCCHHHHhhcC-CcEEEEEEEEEeCCCC
Confidence 589999999999999999999999999999999999999999999999999999999999998 5777654 456555
Q ss_pred ee
Q psy8679 213 YI 214 (221)
Q Consensus 213 YL 214 (221)
|=
T Consensus 155 Yp 156 (195)
T 3zv0_C 155 YP 156 (195)
T ss_dssp SC
T ss_pred cC
Confidence 53
No 10
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=97.35 E-value=0.0004 Score=67.20 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=82.0
Q ss_pred eeeeeeee-ecceEEEEeeehhhhc---ccCcceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeee
Q psy8679 108 GTCFGKFT-KSGKFRLHITALSYLA---PYAQFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLG 183 (221)
Q Consensus 108 Gtc~GkFt-Ks~kFrl~ItaL~~La---~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLG 183 (221)
|.-++-.. ..|.|.+++.++..+- +..+.+|+|.+.+...-+.|.+++-.||..+..++..++-|.|.+.++.++|
T Consensus 476 g~~l~~~~~~dg~~~ptl~g~~~~~~~~~~~~g~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~~ia 555 (582)
T 1iq8_A 476 GKRLATVRADDGLLTLGIEGAKRLHRVLPYPRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLA 555 (582)
T ss_dssp SSEEEEECTTTSCEEECHHHHHHHHHHSCTTTTEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEE
T ss_pred CEEEEEEECCCCcEEecHHHHHHHHhhccCCCCEEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCCEEE
Confidence 44555332 3689999999986542 3456899999999888889999999999999999999999999999999999
Q ss_pred EEeeeechhHhhhcCCCcEEEEe
Q psy8679 184 FGVAAKSTAECKLADPLAIVGFN 206 (221)
Q Consensus 184 FGv~akst~~~~~~dp~~ivv~~ 206 (221)
.|.+.-|++|+++.+. |++|..
T Consensus 556 ~G~a~~ss~ei~~~~k-G~aV~v 577 (582)
T 1iq8_A 556 TGQALLSGREMIVFQY-GRAVKV 577 (582)
T ss_dssp EEEESSCHHHHHHCCS-SEEEEE
T ss_pred EEEEeeCHHHHHhcCC-ceEEEE
Confidence 9999999999999764 666643
No 11
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=97.23 E-value=0.00031 Score=59.07 Aligned_cols=87 Identities=22% Similarity=0.175 Sum_probs=75.2
Q ss_pred ceEEEEeeehhhhcccCcceEEEccCccceeecccccccccceeecc---cCCCcceEEEEec-CCCeeeEEeeeechhH
Q psy8679 118 GKFRLHITALSYLAPYAQFKVWVKPQAEQQFLYGHNILKSGLARITE---NTPKYQGVIVLNM-NDVPLGFGVAAKSTAE 193 (221)
Q Consensus 118 ~kFrl~ItaL~~La~~ak~Kvwvk~~gE~~FLYGn~V~Ks~l~rite---~~~~~~GVvV~n~-nd~pLGFGv~akst~~ 193 (221)
|.+-+++-+|.-. |....+|+|++.+..--+.|.|++--||....+ ++.+++-|+|++. ++.|++.|++.-|++|
T Consensus 76 g~l~PTl~~l~~~-p~~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e 154 (188)
T 3r90_A 76 GPFYPTLRLLHKY-PFILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAED 154 (188)
T ss_dssp CCCEECHHHHHHS-GGGSCEEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHH
T ss_pred CeEechHHHHhhC-cccCCEEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHH
Confidence 5788888777554 566679999999999999999999999998886 8999999999998 8999999999999999
Q ss_pred hhhcCCCcEEEEe
Q psy8679 194 CKLADPLAIVGFN 206 (221)
Q Consensus 194 ~~~~dp~~ivv~~ 206 (221)
+...+ .|++|..
T Consensus 155 ~~~~~-kG~aV~v 166 (188)
T 3r90_A 155 IEKVN-KGIGIEN 166 (188)
T ss_dssp HHHHC-CSEEEEE
T ss_pred HhhcC-CcEEEEE
Confidence 99874 4676654
No 12
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=95.98 E-value=0.0068 Score=56.73 Aligned_cols=77 Identities=21% Similarity=0.330 Sum_probs=67.3
Q ss_pred ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCCcEEEEe---ccccee
Q psy8679 136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN---QSDIGE 212 (221)
Q Consensus 136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~~ivv~~---qaD~Ge 212 (221)
-+|.|++.....+.+|+.+...++.+..++++.++.|+|++.++.+||.|.+.-+++++..++. |+||.. ..|.|-
T Consensus 267 p~V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVvt~kGelLAIG~A~mss~em~~~~~-G~vvk~~rV~m~~~~ 345 (400)
T 3u28_A 267 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDH-GVVASVKRCIMERDL 345 (400)
T ss_dssp CEEEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCSS-SEEEEEEEECSCTTS
T ss_pred CccccCHHHHHHHHCcCccccCccccccccCCCCCEEEEEeCCCcEEEEEEEEeCHHHHhhcCC-cEEEEEEEEeecCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999976 666654 235555
Q ss_pred e
Q psy8679 213 Y 213 (221)
Q Consensus 213 Y 213 (221)
|
T Consensus 346 y 346 (400)
T 3u28_A 346 Y 346 (400)
T ss_dssp S
T ss_pred C
Confidence 5
No 13
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=95.28 E-value=0.034 Score=52.08 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=73.7
Q ss_pred eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccC-cceEEEccCccceeeccccc
Q psy8679 76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYA-QFKVWVKPQAEQQFLYGHNI 154 (221)
Q Consensus 76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~a-k~Kvwvk~~gE~~FLYGn~V 154 (221)
+.+..+.++||++.+.+. .+.+-.++..|..+|++.| ++|+.+-...-.|++-. ++.+=+...-...||-|+.+
T Consensus 343 ~~~~~~~~~~~~~p~~~~----~~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~l~~~~~~~yl~ge~i 417 (456)
T 3m4x_A 343 GRLLVFNDHLWEVPELAP----SLDGLKVVRTGLHLGDFKK-NRFEPSYALALATKKIENIPCLPITQKEWQSYTAGETF 417 (456)
T ss_dssp SEEEEETTEEEEECTTCC----CCTTCCEEEESEEEEEEET-TEEEECHHHHHTCCCGGGSCEEEECHHHHHHHHHTCCE
T ss_pred CceEEECCEEEEeccCcc----cccCCeEEEcCceeeEEeC-CceeECHHHHHhcCccccCcEEEcCHHHHHHHhCCCCc
Confidence 467788999999998762 3466789999999999976 89999865544455543 34677766666789999987
Q ss_pred ccccceeecccCCCcceEEEEecCCCeeeEEeee
Q psy8679 155 LKSGLARITENTPKYQGVIVLNMNDVPLGFGVAA 188 (221)
Q Consensus 155 ~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~a 188 (221)
-- ++ ..|-++..-++.|||||...
T Consensus 418 ~~------~~----~~g~~lv~~~g~~lG~~k~~ 441 (456)
T 3m4x_A 418 QR------DG----NQGWVLLVLDKIPVGFGKQV 441 (456)
T ss_dssp EC------SC----CCEEEEEEETTEEEEEEEEE
T ss_pred cc------CC----CCCEEEEEECCEeEEEEEee
Confidence 42 21 26877777799999999885
No 14
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=94.85 E-value=0.055 Score=50.61 Aligned_cols=103 Identities=15% Similarity=0.240 Sum_probs=74.9
Q ss_pred eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhcccCc-ceEEEccCccceeeccccc
Q psy8679 76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQ-FKVWVKPQAEQQFLYGHNI 154 (221)
Q Consensus 76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~ak-~Kvwvk~~gE~~FLYGn~V 154 (221)
..+....+++|++++.+... ++.-.++..|..+|++.| +.|+++-...-.|.+.+. ..+=+...--..||-|+.|
T Consensus 355 ~~~~~~~~~~~~~p~~~~~~---~~~lr~~r~G~~lg~~kk-~rf~Ps~~la~~l~~~~~~~~~~l~~~~~~~yL~Ge~i 430 (479)
T 2frx_A 355 LRLWQRDKELWLFPVGIEAL---IGKVRFSRLGIKLAETHN-KGYRWQHEAVIALASPDNMNAFELTPQEAEEWYRGRDV 430 (479)
T ss_dssp EEEEESSSEEEEEEHHHHTT---BTTBCCSEESEEEEEEET-TEEEECHHHHHHHBCSSSSSEEECCHHHHHHHHTTCCC
T ss_pred ceEEEECCEEEEeccccchh---ccCcEEEecceEEEEEec-CCceEcHHHHHhcchhhcCcEEECCHHHHHHHhcCCCC
Confidence 56777789999999987543 344578999999999987 789999876666766553 4555654445579999987
Q ss_pred ccccceeecccCCCcceEEEEecCCCeeeEEeeeec
Q psy8679 155 LKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKS 190 (221)
Q Consensus 155 ~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~aks 190 (221)
--. ++ ...|-|+..-.+.|||||....+
T Consensus 431 ~~~------~~--~~~G~vlv~~~g~pLG~gK~~g~ 458 (479)
T 2frx_A 431 YPQ------AA--PVADDVLVTFQHQPIGLAKRIGS 458 (479)
T ss_dssp CCS------SC--CSCSEEEEEETTEEEEEEECTTT
T ss_pred cCC------CC--CCCCEEEEEECCEeeEEEEeeCC
Confidence 432 11 23577777778999999998644
No 15
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=93.97 E-value=0.045 Score=51.39 Aligned_cols=100 Identities=17% Similarity=0.225 Sum_probs=71.7
Q ss_pred eEEEeeCcEEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhhccc-----CcceEEEccCcc--cee
Q psy8679 76 YCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPY-----AQFKVWVKPQAE--QQF 148 (221)
Q Consensus 76 y~frlhk~rVyYvs~~l~k~a~~i~r~~L~S~Gtc~GkFtKs~kFrl~ItaL~~La~~-----ak~Kvwvk~~gE--~~F 148 (221)
+.+..+.++||++.+.+.. +.+-.++..|..+|++.| ++|+.+-...-.|++- ++..+=+....| ..|
T Consensus 336 ~~~~~~~~~~~~~p~~~~~----~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~~~~~l~~~~~~~~~y 410 (464)
T 3m6w_A 336 GPVLDRAGHLYLLPEGLPT----LLGLKAPAPGLYLGKVQK-GRFLPARALALAFGATLPWPEGLPRLALTPEDPRALAF 410 (464)
T ss_dssp SCEEEETTEEEECCTTCBC----CTTSCCSBSSEEEEEEET-TEEEEBHHHHHHBTTTBCCCTTSCEEEECTTSHHHHHH
T ss_pred ccEEEECCEEEEeccCccc----ccCCeEEEccceeeEEeC-CceeECHHHHHhcCcccccccccceEEecccHHHHHHH
Confidence 4577789999999986532 355688999999999976 8999986554445543 245566765553 389
Q ss_pred ecccccccccceeecccCCCcceEEEE----ecCCCeeeEEeeee
Q psy8679 149 LYGHNILKSGLARITENTPKYQGVIVL----NMNDVPLGFGVAAK 189 (221)
Q Consensus 149 LYGn~V~Ks~l~rite~~~~~~GVvV~----n~nd~pLGFGv~ak 189 (221)
|-|+.+-- ++ +. .|.++. .-++.|||||....
T Consensus 411 l~ge~i~~------~~--~~-~G~~lv~~~~~~~g~~lG~~k~~g 446 (464)
T 3m6w_A 411 ATGEGVAW------EG--ED-HPLALVVLKTAAGEFPLDFGKAKR 446 (464)
T ss_dssp HTTCCEEC------CS--CC-EEEEEEEEEETTEEEEEEEEEEET
T ss_pred HCCCCccC------CC--CC-CceEEEeeccEECCEeeEEEEccC
Confidence 99998742 22 12 577766 77899999998853
No 16
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=89.97 E-value=0.46 Score=43.03 Aligned_cols=65 Identities=23% Similarity=0.306 Sum_probs=54.5
Q ss_pred ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCC
Q psy8679 136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPL 200 (221)
Q Consensus 136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~ 200 (221)
-+|.|++.....+..|+.+...++....++++..+-|.|++.++.+||.|.+..|..+....+..
T Consensus 251 p~V~L~de~a~~V~nGq~L~~~gv~~~~~~i~~gd~V~V~~~~G~fLAIGe~~~s~~e~~~~~~G 315 (334)
T 2aus_C 251 PKIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKG 315 (334)
T ss_dssp CEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHCSSS
T ss_pred cEEEECHHHHHHHHCCCccccCcccccccccCCCCEEEEEecCCeEEEEEEeccCchhccccCCC
Confidence 47889999999999999998777766777777777899999999999999988788887766553
No 17
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=89.37 E-value=0.51 Score=43.37 Aligned_cols=65 Identities=26% Similarity=0.266 Sum_probs=54.1
Q ss_pred ceEEEccCccceeecccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCCC
Q psy8679 136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPL 200 (221)
Q Consensus 136 ~Kvwvk~~gE~~FLYGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp~ 200 (221)
-+|.|+++....+.+|+.+...++.+++++++..+.|+|++.++.+||.|.+..+++++...+..
T Consensus 270 P~v~l~~~~~~~i~nG~~L~~pgi~~~~~~i~~gd~V~v~~~~G~flAIGea~~~~~ei~~~~kG 334 (357)
T 2apo_A 270 KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADKG 334 (357)
T ss_dssp EEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSSS
T ss_pred cEEEECHHHHHHHhCcCccCCCcccccccccCCCCeEEEEcCCCEEEEEEEeccccccccccCCC
Confidence 48899999999999999998777767777777777899999999999999987777777765543
No 18
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=87.68 E-value=0.62 Score=41.48 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=48.1
Q ss_pred eEEEccCccceeecccc-cccccceeecccCCCcceEEEEecCCCeeeEEeeeech
Q psy8679 137 KVWVKPQAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST 191 (221)
Q Consensus 137 Kvwvk~~gE~~FLYGn~-V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst 191 (221)
+|.+|+++|...+-|.. |++..|.++..+....+-|.|++.++.|||.|...+.+
T Consensus 4 ~~~l~~~~~~~~~~~~pwv~~~~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s 59 (396)
T 3c0k_A 4 RLVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPAS 59 (396)
T ss_dssp EEEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEECTTS
T ss_pred EEEECchHHHHHhcCCCeEEhhHhhcccCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 69999999999888888 78888888888877888899999999999999987554
No 19
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=87.47 E-value=0.44 Score=43.26 Aligned_cols=65 Identities=17% Similarity=0.240 Sum_probs=58.1
Q ss_pred cceEEEccCccceee-cccccccccceeecccCCCcceEEEEecCCCeeeEEeeeechhHhhhcCC
Q psy8679 135 QFKVWVKPQAEQQFL-YGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADP 199 (221)
Q Consensus 135 k~Kvwvk~~gE~~FL-YGn~V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst~~~~~~dp 199 (221)
+-+|+|...+..--+ -|..++-++|..+..++...+-|.|.+.++.++|-|.+..|.+|+++...
T Consensus 275 ~G~v~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~~~~g~~ia~G~~~y~s~e~~~~~g 340 (367)
T 2j5v_A 275 AGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIAG 340 (367)
T ss_dssp SCEEEECHHHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEEETTCCEEEEEECSSCHHHHHHHTT
T ss_pred CCEEEECcCHHHHHHhCCCccCCcccEEEECcccCCCEEEEECCCCCEEEEEEecCCHHHHHHHhC
Confidence 458888877777666 58899999999999999999999999999999999999999999986543
No 20
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=66.07 E-value=5.6 Score=36.02 Aligned_cols=51 Identities=14% Similarity=0.100 Sum_probs=38.0
Q ss_pred ceEEEccCccceeecccc-cccccceeecccCCCcceEEEEecCCCeeeEEeeee
Q psy8679 136 FKVWVKPQAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAK 189 (221)
Q Consensus 136 ~Kvwvk~~gE~~FLYGn~-V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~ak 189 (221)
.+|.+||++|..+.=|.. |++..|.++.+. .+-|.|++.++.+||.|....
T Consensus 6 ~~~~l~~~~~~~~~~g~pwi~~~~i~~~~~~---G~~v~v~~~~g~~lg~g~~~~ 57 (393)
T 4dmg_A 6 LRLVVKAGKERKLRNFYPNLYRDEIAAPPEG---VGVAEAVDAEGHFLAVGYYDP 57 (393)
T ss_dssp CEEEECTTCCHHHHTTCCEECGGGEEECCSS---SEEEEEECTTCCEEEEEEECT
T ss_pred cEEEECcchHHHHhcCCCEEEHHHhcCcCCC---CCEEEEEcCCCCEEEEEEECC
Confidence 479999999977665554 445555666543 666889999999999999853
No 21
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=59.67 E-value=4.8 Score=31.61 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=21.9
Q ss_pred cccccccccccccccCCCCceeEEEeCCeEEEEc
Q psy8679 3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVS 36 (221)
Q Consensus 3 ~~~~yiG~n~~~li~r~d~~y~FRlhk~RVyYvs 36 (221)
++++ +| ++.++|+-+++|+|+.|+||++
T Consensus 18 ~l~~-~g-----~~~~~~~~~~~k~~~~~~~~v~ 45 (153)
T 1q7h_A 18 QMSR-YG-----IDITGESLEVAAQKSASAYYIG 45 (153)
T ss_dssp HHHT-TT-----CCCTTCCCEEEECSSCEEEEET
T ss_pred HHHH-cC-----CccCCCcEEEEEeCCcEEEEEC
Confidence 4455 66 4555677799999999999997
No 22
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=57.01 E-value=8.5 Score=33.99 Aligned_cols=55 Identities=25% Similarity=0.272 Sum_probs=37.0
Q ss_pred eEEEccCccceeecccc-cccccceeecccCCCcceEEEEecCCCeeeEEeeeech
Q psy8679 137 KVWVKPQAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST 191 (221)
Q Consensus 137 Kvwvk~~gE~~FLYGn~-V~Ks~l~rite~~~~~~GVvV~n~nd~pLGFGv~akst 191 (221)
+|+|+|.+|....-|+. +.+..+.....+.+..+-|.|++.++.+||.|...+.+
T Consensus 3 ~v~l~~~~~~~l~~g~pw~yrn~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s 58 (396)
T 2as0_A 3 RVVVDAQAARAIGKGAMIVFKKGVVRVEGDIKPGDIVEVYTRGGKFLGKGFANPNS 58 (396)
T ss_dssp EEEECHHHHHHHHTTCCEEEGGGEEEEESCCCTTCEEEEEETTCCEEEEEEECTTS
T ss_pred eEEECHhHHHHHHcCCcEEEHHHccccCCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 68889877764433322 23333344444455677899999999999999997655
No 23
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=40.47 E-value=19 Score=28.14 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=19.5
Q ss_pred cccccccccCCCCceeEEEe---CCeEEEEc
Q psy8679 9 GSNVKLLIDRPDGTYCFREM---RDRVFYVS 36 (221)
Q Consensus 9 G~n~~~li~r~d~~y~FRlh---k~RVyYvs 36 (221)
|-.+. .-+.+..++||.|. ...+|+.+
T Consensus 64 g~~V~-~~e~~~~~~~F~L~~~~~G~~Y~fq 93 (126)
T 2dtc_A 64 GWMVQ-LPDDPEHPDIFQLNNPDKGNVYKFQ 93 (126)
T ss_dssp TCEEE-CCCCTTSTTEEEEECTTSCSEEEEE
T ss_pred CCEEE-ecCCCCCCCEEEEeeCCCCCEEEEe
Confidence 34443 44556678999999 67899987
No 24
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=27.31 E-value=49 Score=24.62 Aligned_cols=18 Identities=17% Similarity=0.331 Sum_probs=14.4
Q ss_pred CCCceeEEE-eCCeEEEEc
Q psy8679 19 PDGTYCFRE-MRDRVFYVS 36 (221)
Q Consensus 19 ~d~~y~FRl-hk~RVyYvs 36 (221)
.+.+|||++ |..|+||..
T Consensus 69 ~~~~~~Fki~~~~~~y~f~ 87 (112)
T 2coc_A 69 LDSGHVWKLQWAKQSWYLS 87 (112)
T ss_dssp CSSSEEEEEEETTEEEEEE
T ss_pred cCCCCEEEEecCCeEEEEE
Confidence 346799995 589999987
No 25
>3gdi_A Period circadian protein homolog 2; tandem PAS domains, biological rhythms, cytoplasm, nucleus, phosphoprotein, transcription; 2.40A {Mus musculus}
Probab=26.72 E-value=40 Score=29.45 Aligned_cols=49 Identities=10% Similarity=0.300 Sum_probs=28.8
Q ss_pred ccccCCCCceeEEEe--CCeEEEEcHHHHhhhcccCcccceecceecccccccccccccCCC
Q psy8679 14 LLIDRPDGTYCFREM--RDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPD 73 (221)
Q Consensus 14 ~li~r~d~~y~FRlh--k~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~ni~~li~~~d 73 (221)
.+++.-|| ++|-+. ..||.|+|+++.+.-. .+.+.| +|.++-.++.+.|
T Consensus 19 lll~a~dg-F~~vvs~~~G~i~yvS~s~~~~Lg-~~~~el---------~g~s~~d~iHp~D 69 (309)
T 3gdi_A 19 YIVKNADM-FAVAVSLVSGKILYISNQVASIFH-CKKDAF---------SDAKFVEFLAPHD 69 (309)
T ss_dssp ----CTTE-EEEEECTTTCBEEEECTTTTTTC-----------------CCSBGGGGBCTTT
T ss_pred HHHHhcCC-EEEEEECCCceEEEECCHHHHHcC-CCHHHH---------cCCchhhccCHhH
Confidence 45666788 999986 3899999998876654 445555 3666667666554
No 26
>4dj2_A Period circadian protein homolog 1; PAS domains, circadian clock protein, protein binding; 2.75A {Mus musculus}
Probab=22.10 E-value=50 Score=29.02 Aligned_cols=40 Identities=18% Similarity=0.322 Sum_probs=29.1
Q ss_pred cccccc-----ccCCCCceeEEEe--CCeEEEEcHHHHhhhcccCcccc
Q psy8679 10 SNVKLL-----IDRPDGTYCFREM--RDRVFYVSEKILTLAENFGPDHL 51 (221)
Q Consensus 10 ~n~~~l-----i~r~d~~y~FRlh--k~RVyYvse~i~k~At~i~r~~L 51 (221)
+.+++| ++..|| ++|-+. ..+|.|+|+++.+.-. .+++.|
T Consensus 21 eel~~l~~e~lLqaldG-F~~vvs~~~G~i~yvS~sv~~~Lg-~~~~~l 67 (320)
T 4dj2_A 21 EELEHITSEYTLRNQDT-FSVAVSFLTGRIVYISEQAGVLLR-CKRDVF 67 (320)
T ss_dssp HHHHHHHHHHTTSCSSE-EEEEEETTTCBEEEECTHHHHHHT-SCSTTT
T ss_pred HHHHHHHHHHHHhccCC-EEEEEECCCceEEEECcHHHHHhC-cCHHHH
Confidence 445555 677788 999886 4899999999887665 445555
No 27
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=20.89 E-value=71 Score=27.99 Aligned_cols=47 Identities=15% Similarity=0.107 Sum_probs=32.6
Q ss_pred ccCCCCceeEEEe--CCeEEEEcHHHHhhhcccCcccceecceecccccccccccccCCC
Q psy8679 16 IDRPDGTYCFREM--RDRVFYVSEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPD 73 (221)
Q Consensus 16 i~r~d~~y~FRlh--k~RVyYvse~i~k~At~i~r~~L~slGtc~GyiG~ni~~li~~~d 73 (221)
++..|| ++|-+. ..||.|+|+++.+.-. .+++.| +|.++-.++-+.|
T Consensus 32 L~aldg-F~~vvs~~~G~i~yvS~~~~~~Lg-~~~~el---------~g~s~~d~ihp~D 80 (317)
T 4dj3_A 32 SKNTDT-FAAVFSFLSGRLVHISEQAALILN-SKRGFL---------KSVHFVDLLAPQD 80 (317)
T ss_dssp TSCTTE-EEEEEETTTCBEEEECTTHHHHTT-CCHHHH---------HTSBGGGGBCGGG
T ss_pred HhccCC-EEEEEEcCCcEEEEECCHHHHHcC-CCHHHH---------cCCchhhhcChhh
Confidence 677788 999986 4899999998877655 445555 4555555554443
Done!