RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8679
(221 letters)
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 145 bits (367), Expect = 5e-46
Identities = 52/76 (68%), Positives = 66/76 (86%)
Query: 136 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECK 195
+KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+PLGFGVAAKST +C+
Sbjct: 1 YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCR 60
Query: 196 LADPLAIVGFNQSDIG 211
DP+AIV F+Q+DIG
Sbjct: 61 KVDPMAIVVFHQADIG 76
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 142 bits (360), Expect = 1e-44
Identities = 53/75 (70%), Positives = 63/75 (84%)
Query: 61 IGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKF 120
IG N++LL+DRPDGTYCFR DRV+YVSEKI+ LA N D L++LGTCFGKFTK+ KF
Sbjct: 20 IGENLQLLVDRPDGTYCFRLHNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKF 79
Query: 121 RLHITALSYLAPYAQ 135
RLH+TAL YLAPYA+
Sbjct: 80 RLHVTALDYLAPYAK 94
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 35.6 bits (82), Expect = 5e-04
Identities = 16/61 (26%), Positives = 24/61 (39%)
Query: 135 QFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAEC 194
+ +V V +AE G ++ + Y V+V+N ND L G A S E
Sbjct: 2 RMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREM 61
Query: 195 K 195
Sbjct: 62 I 62
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 32.0 bits (73), Expect = 0.011
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 137 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAE 193
V V AE L G ++ G+ + ++ K + V + + G+A E
Sbjct: 4 IVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGE 60
>d1ac5a_ c.69.1.5 (A:) Serine carboxypeptidase II {Baker's yeast
(Saccharomyces cerevisiae), kex1(delta)p [TaxId: 4932]}
Length = 483
Score = 28.6 bits (63), Expect = 0.64
Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 42 LAENFGPDHLLALGTCFGNIGSNVK----LLIDRPDGT-YCFREMRDRVFYVSEKILTLA 96
GP + + G + N GS + L ID+P GT + + +D K
Sbjct: 85 ALVESGPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDL 144
Query: 97 ENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYA 134
E+ + L F F + ++ ++ SY Y
Sbjct: 145 EDVTKHFMDFLENYFKIFPEDLTRKIILSGESYAGQYI 182
>d2cs0a1 d.93.1.1 (A:8-113) Hematopoietic SH2 domain containing
protein HSH2D {Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 26.2 bits (57), Expect = 1.4
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 4/58 (6%)
Query: 66 KLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLH 123
LL +P G++ R V Y L+ H + G F G+ H
Sbjct: 23 NLLESQPLGSFLIRVSHSHVGYT----LSYKAQSSCCHFMVKLLDDGTFMIPGEKVAH 76
>d2fr5a1 c.97.1.1 (A:11-146) mono-domain cytidine deaminase {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 136
Score = 26.1 bits (57), Expect = 2.5
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 10/49 (20%)
Query: 3 QVIHNIGSNVKLLIDRPDGTYCFREMRDRVFYVSEKILTLAENFGPDHL 51
QV+ G++ + + +PDGT+ R +++ +L + FGP+ L
Sbjct: 94 QVMREFGTDWAVYMTKPDGTFVVRTVQE--------LLPAS--FGPEDL 132
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 64
Score = 24.3 bits (53), Expect = 3.2
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 137 KVWVKPQAEQQFLYGH-NILKSGLARITENTPKYQGVIVLNMNDVPLGFG 185
++ V + + L H + + + E G+ + L
Sbjct: 2 RIQVNAKGAARLLSRHLWVFRRDVVSGPET----PGLYPVYWGRRFLALA 47
>d1ylia1 d.38.1.1 (A:11-152) Putative acyl-coa thioester hydrolase
HI0827 {Haemophilus influenzae [TaxId: 727]}
Length = 142
Score = 24.6 bits (53), Expect = 7.4
Identities = 18/92 (19%), Positives = 29/92 (31%), Gaps = 4/92 (4%)
Query: 36 SEKILTLAENFGPDHLLALGTCFGNIGSNVKLLIDRPDGTYCFREMRDRVFYVS-EKILT 94
S+ +L L P A G F G + +D RV V+ E +
Sbjct: 3 SKGVLLLRTLAMPSDTNANGDIF---GGWIMSQMDMGGAILAKEIAHGRVVTVAVESMNF 59
Query: 95 LAENFGPDHLLALGTCFGKFTKSGKFRLHITA 126
+ D + G C S K ++ +
Sbjct: 60 IKPISVGDVVCCYGQCLKVGRSSIKIKVEVWV 91
>d1qada_ d.93.1.1 (A:) Phosphatidylinositol 3-kinase, p85-alpha
subunit {Cow (Bos taurus) [TaxId: 9913]}
Length = 107
Score = 24.2 bits (52), Expect = 8.3
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 58 FGNIGSN--VKLLIDRPDGTYCFREMRDRVFYV 88
G+ N LL + DGT+ RE + Y
Sbjct: 13 VGSSNRNKAENLLRGKRDGTFLVRESSKQGCYA 45
>d2eyva1 d.93.1.1 (A:12-120) Crk proto-oncogen {Human (Homo
sapiens) [TaxId: 9606]}
Length = 109
Score = 24.0 bits (51), Expect = 8.6
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 7/73 (9%)
Query: 13 KLLIDRPDGTYCFRE-MRDRVFYVSEKILTLAENFGPDHLL--ALGTCFGNIGSNVKLLI 69
LL + G + R+ YV L+++EN H + + G S +
Sbjct: 14 ALLQGQRHGVFLVRDSSTSPGDYV----LSVSENSRVSHYIINSSGPRPPVPPSPAQPPP 69
Query: 70 DRPDGTYCFREMR 82
+
Sbjct: 70 GVSPSRLRIGDQE 82
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.142 0.435
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 840,077
Number of extensions: 38580
Number of successful extensions: 137
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 16
Length of query: 221
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 139
Effective length of database: 1,281,736
Effective search space: 178161304
Effective search space used: 178161304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.8 bits)