Query psy8680
Match_columns 180
No_of_seqs 116 out of 169
Neff 2.4
Searched_HMMs 29240
Date Sat Aug 17 01:00:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8680.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8680hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sqw_A Saccharomyces cerevisia 100.0 9.4E-66 3.2E-70 420.9 7.0 141 1-179 40-180 (188)
2 2p38_A Protein involved in rib 100.0 2.1E-49 7.3E-54 314.9 6.1 124 1-174 39-166 (166)
3 1q7h_A Conserved hypothetical 99.6 8.3E-16 2.9E-20 116.9 8.4 96 28-165 46-141 (153)
4 2q07_A Uncharacterized protein 97.5 0.0003 1E-08 60.2 7.6 95 22-163 196-292 (306)
5 3zv0_C H/ACA ribonucleoprotein 97.2 0.00049 1.7E-08 56.7 5.5 76 96-172 78-156 (195)
6 1sqw_A Saccharomyces cerevisia 97.1 0.0002 6.8E-09 58.7 2.5 62 66-138 105-169 (188)
7 3d79_A PUA domain, putative un 97.1 0.0015 5.2E-08 51.2 7.4 63 95-157 96-159 (179)
8 2cx0_A Hypothetical protein AP 97.0 0.00085 2.9E-08 53.3 5.1 58 95-152 94-152 (187)
9 1iq8_A Archaeosine tRNA-guanin 96.7 0.0029 9.8E-08 58.1 6.6 62 101-163 515-576 (582)
10 3r90_A Malignant T cell-amplif 96.5 0.0024 8.2E-08 51.0 4.5 69 95-164 94-166 (188)
11 3u28_A H/ACA ribonucleoprotein 95.0 0.022 7.4E-07 51.1 4.7 75 96-171 269-346 (400)
12 2p38_A Protein involved in rib 93.4 0.034 1.2E-06 43.9 2.1 55 66-138 106-160 (166)
13 2j5v_A Glutamate 5-kinase; pro 93.1 0.1 3.4E-06 45.0 4.8 56 101-156 283-339 (367)
14 2frx_A Hypothetical protein YE 93.0 0.18 6E-06 44.6 6.3 98 2-148 361-458 (479)
15 3m4x_A NOL1/NOP2/SUN family pr 92.6 0.18 6.2E-06 44.7 5.9 93 2-147 349-442 (456)
16 3m6w_A RRNA methylase; rRNA me 89.2 0.24 8.3E-06 44.0 3.4 95 2-148 342-447 (464)
17 3c0k_A UPF0064 protein YCCW; P 87.6 0.64 2.2E-05 38.7 4.8 54 96-149 5-59 (396)
18 2aus_C Pseudouridine synthase; 86.9 1.1 3.9E-05 38.5 6.0 63 96-158 253-315 (334)
19 2apo_A Probable tRNA pseudouri 86.1 1.2 4.2E-05 39.1 5.8 63 95-157 271-333 (357)
20 4dmg_A Putative uncharacterize 59.6 7.2 0.00025 33.4 3.6 46 101-149 13-59 (393)
21 2as0_A Hypothetical protein PH 56.7 9.8 0.00034 31.5 3.8 32 118-149 27-58 (396)
22 2kxg_A Aspartic protease inhib 28.7 40 0.0014 24.1 2.8 24 39-62 55-81 (95)
23 2o9u_X Monellin chain B and mo 23.9 48 0.0016 24.5 2.5 21 39-62 60-80 (97)
24 3k5r_A Cadherin 13; mouse, str 23.0 1.5E+02 0.0051 22.4 5.2 17 82-98 101-117 (218)
25 2a62_A Cadherin-8; extracellul 20.7 2.7E+02 0.0091 22.7 6.7 13 82-94 208-220 (322)
26 2w9q_A Multicystatin; protease 20.1 64 0.0022 21.6 2.3 24 39-62 49-74 (87)
No 1
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=100.00 E-value=9.4e-66 Score=420.85 Aligned_cols=141 Identities=66% Similarity=1.137 Sum_probs=136.1
Q ss_pred CCCeEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhcccccceeEEeccccchhhhccccccccccc
Q psy8680 1 MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLA 80 (180)
Q Consensus 1 ~~~RVyYvse~il~~a~~~~~d~LlslGtc~GKFtKsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~~~~a 80 (180)
|++||||||++|+++|++|+|++|+|+|||||||||+|||+|||||+++||||+++||||||
T Consensus 40 ~~~rVyyv~~~i~~~a~~i~r~~l~s~Gtc~Gkftk~gkF~L~It~l~~La~~~~~kV~Vk~------------------ 101 (188)
T 1sqw_A 40 HNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAKYKVWIKP------------------ 101 (188)
T ss_dssp ETTEEEEEEHHHHHTTTSSCHHHHHHHSEEEEEECTTSCEEECGGGHHHHGGGCSCEEEECH------------------
T ss_pred cCCEEEEECHHHHHHHhcCCcCCeeEeeeEEEEEecCCcEEEchhHHHHhhhccCcEEEECC------------------
Confidence 58999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeE
Q psy8680 81 RITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAI 160 (180)
Q Consensus 81 ~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~i 160 (180)
++||+||||+||+|+||.||||++|+++||+|+||||+|||||++++||+||+.+||+++
T Consensus 102 --------------------~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~n~~d~pLG~G~a~~s~~e~~~~~~~~~ 161 (188)
T 1sqw_A 102 --------------------GAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCRKVDPMAI 161 (188)
T ss_dssp --------------------HHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHSCTTSE
T ss_pred --------------------CceeeEEeccchhHHhhhhcCCCCCCCCEEEEEeCCCCEEEEEEeecCHHHHHhcCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecccceeeeecccccC
Q psy8680 161 VGFNQSDIGEYIRYMTNML 179 (180)
Q Consensus 161 VvfnqaDiGEYlR~e~~~~ 179 (180)
||+||+|+|||||+|++++
T Consensus 162 vv~~q~D~GeYLR~e~~~~ 180 (188)
T 1sqw_A 162 VVFHQADIGEYVRHEETLT 180 (188)
T ss_dssp EEEEEEEGGGTCSCC----
T ss_pred EEEEcccceeeeEcCceee
Confidence 9999999999999999986
No 2
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=100.00 E-value=2.1e-49 Score=314.94 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=114.6
Q ss_pred CCCeEEEEcHHHHhhhcccCCCCeeeeeeeeeee----eecceEEEEeeehhhcccccceeEEeccccchhhhccccccc
Q psy8680 1 MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKF----TKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILK 76 (180)
Q Consensus 1 ~~~RVyYvse~il~~a~~~~~d~LlslGtc~GKF----tKsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~ 76 (180)
|++|||||+++++++|+++ +++|+|+||||||| ||+|||++||||+++| +++++||||+|
T Consensus 39 ~~~~Vy~v~~~~~~~~~~~-~~~l~s~G~~~Gk~~~~~t~~~kf~pti~~l~~l-~~~k~kV~V~~-------------- 102 (166)
T 2p38_A 39 KYRDVYAVNEEVWKIIEDI-NMRPYSLGTFVGTIRVDENLVEKFYPNLEFFSLI-KLEKNYVILGP-------------- 102 (166)
T ss_dssp SSEEEEEECHHHHHHTTTC-CCCGGGTEEEEEEEEECTTSCEEEEECHHHHTTE-EECSSEEEECH--------------
T ss_pred cCcEEEEECcHHHHHhhcc-CccceEEEEEEEEEEecccCCCeEEEehHHhhhc-cccccEEEECC--------------
Confidence 5789999999999999999 99999999999999 8899999999999999 99999999999
Q ss_pred cccceeccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcC
Q psy8680 77 SGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLAD 156 (180)
Q Consensus 77 ~~~a~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~d 156 (180)
+|||+||||+||+|+||.++| +|++++|+|+||+|.|||||++++|
T Consensus 103 ------------------------~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~~~~~~pLG~G~a~~s-------- 148 (166)
T 2p38_A 103 ------------------------KASFLFTTGKDAPKEAVREIK--WQGSKRVVVLNDLGDIIGIGLINPK-------- 148 (166)
T ss_dssp ------------------------HHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEECTTSCEEEEEEECTT--------
T ss_pred ------------------------cceEeeecCCCcchhcceEEe--ecCCCEEEEEECCCcEEEEEEEEEC--------
Confidence 999999999999999999999 9999999999999999999999998
Q ss_pred CCeEEEEecccceeeeec
Q psy8680 157 PLAIVGFNQSDIGEYIRY 174 (180)
Q Consensus 157 p~~iVvfnqaDiGEYlR~ 174 (180)
|+++|++||+|+|||||+
T Consensus 149 ~~gkvv~n~~dvGeYLR~ 166 (166)
T 2p38_A 149 SDRRFIKNLKDVGEFLRR 166 (166)
T ss_dssp CSTTSEEEEEC-------
T ss_pred CCCEEEEEcccceeeecC
Confidence 899999999999999995
No 3
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2
Probab=99.63 E-value=8.3e-16 Score=116.92 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=86.1
Q ss_pred eeeeeeeeecceEEEEeeehhhcccccceeEEeccccchhhhccccccccccceeccCCCCccceeeEeeecCcccceee
Q psy8680 28 GTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFL 107 (180)
Q Consensus 28 Gtc~GKFtKsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~~~~a~i~e~~~~~~~~~~~~~~~~~aE~~FL 107 (180)
|.+++ |+ +|+|+++++++..+ |+...+|||++ .|++..+
T Consensus 46 g~~l~-f~-~g~~~ptl~~l~~l-~~~~~~v~vd~--------------------------------------ga~~~l~ 84 (153)
T 1q7h_A 46 GKPMV-FQ-AGDLIPSVYLLNYR-NPSRNIVTVDE--------------------------------------GAEPHIL 84 (153)
T ss_dssp TEEEE-EE-SSSEEECHHHHHHS-CCSSSEEEECT--------------------------------------TTHHHHT
T ss_pred CEEEE-EE-CCeeeeehHHHhhC-CccCCEEEECH--------------------------------------hHHHHHH
Confidence 56777 88 99999999999998 78888999998 8999999
Q ss_pred cccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeEEEEec
Q psy8680 108 YGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFNQ 165 (180)
Q Consensus 108 YG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~iVvfnq 165 (180)
+|.+++..|+.++++++++++.|.|+++++.|+|+|+++.|++|++..+ .++++...
T Consensus 85 ~Ga~ll~~GV~~~~~~~~~gd~V~V~~~~g~~ia~G~~~~ss~e~~~~~-~G~~v~v~ 141 (153)
T 1q7h_A 85 NGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGEVMATK-RGKAARII 141 (153)
T ss_dssp TTCCEEGGGEEEECTTCCTTCEEEEEETTSCEEEEEEESSCHHHHHHHC-CSEEEEEE
T ss_pred cCCCcCccccCcccCceeCCCEEEEEECCCCEEEEEEEecCHHHHHhcC-CCeEEEEE
Confidence 9999999999999999999999999999999999999999999999864 45555443
No 4
>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5
Probab=97.45 E-value=0.0003 Score=60.17 Aligned_cols=95 Identities=22% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCeeeeeeeeeeee-ecceEEEEeeehhhcccccceeEEeccccchhhhccccccccccceeccCCCCccceeeEeeecC
Q psy8680 22 DHLLALGTCFGKFT-KSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLARITENTPKYQGVIFKVWVKP 100 (180)
Q Consensus 22 d~LlslGtc~GKFt-KsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~~~~a~i~e~~~~~~~~~~~~~~~~ 100 (180)
+.++.=|..++-|. ..|.|.+++.|...|.++...+|+|+ .
T Consensus 196 ~~v~vdg~~l~~~~~~dg~~~ptl~Ga~~l~~~~~~~V~Vd--------------------------------------~ 237 (306)
T 2q07_A 196 LELLEGKKRLARVDRIYGMLDIYEKIAAYLLEKNIYTVEIG--------------------------------------D 237 (306)
T ss_dssp CEEEETTEEEEEEETTTTEEEECHHHHHHHHHTTCSEEEEC--------------------------------------S
T ss_pred EEEEECCEEEEEEEccCCeEEEcHHHHHHhhhCCCCEEEEc--------------------------------------c
Confidence 34455577777664 46788888888887776555566665 2
Q ss_pred cccceee-cccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeEEEE
Q psy8680 101 QAEQQFL-YGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF 163 (180)
Q Consensus 101 ~aE~~FL-YG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~iVvf 163 (180)
|+ .| ||+.-||...++++.+++-|+| .+|.++|.|.|.-|++|.+..+. ++++-
T Consensus 238 -----~v~~G-~v~~pGv~~~~~~i~~gd~V~V--~~g~~vavG~a~ms~~em~~~~k-G~aV~ 292 (306)
T 2q07_A 238 -----FEVKG-TIFAGGVLRADEKIRPNDVVVF--HNSRIFGVGLAAMSGKEMAGSEK-GIAIN 292 (306)
T ss_dssp -----SCCCS-EEEGGGEEEECTTCCTTCEEEE--ECSSCEEEEEESSCHHHHSCC---CEEEE
T ss_pred -----cccCC-ceeCCeeEeCCCCcCCCCEEEE--ECCEEEEEEEEeeCHHHHhhcCC-ceEEE
Confidence 44 56 9999999999999999999999 77999999999999999988765 44443
No 5
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}
Probab=97.17 E-value=0.00049 Score=56.72 Aligned_cols=76 Identities=21% Similarity=0.322 Sum_probs=64.8
Q ss_pred eeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeEEEEe---cccceeee
Q psy8680 96 VWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN---QSDIGEYI 172 (180)
Q Consensus 96 ~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~iVvfn---qaDiGEYl 172 (180)
|.|...|....+.|.+++..||.++..++.+.+-|.|++.++.++|.|++..|++|.+..+ .++++.. ..|.|-|=
T Consensus 78 VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~~~~G~~IAvG~a~~sS~Ei~~~~-kG~aVkv~rVimd~~~Yp 156 (195)
T 3zv0_C 78 IVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCD-HGVVASVKRCIMERDLYP 156 (195)
T ss_dssp EEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCS-SSEEEEEEEECBCTTSSC
T ss_pred EEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEEcCCCCEEEEEEEcCCHHHHhhcC-CcEEEEEEEEEeCCCCcC
Confidence 4555588888899999999999999999999999999999999999999999999999988 4666554 34555553
No 6
>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A
Probab=97.10 E-value=0.0002 Score=58.71 Aligned_cols=62 Identities=40% Similarity=0.625 Sum_probs=41.5
Q ss_pred hhhhccccccccccceeccCCCCccceeeEeeecCcccceeecccccccccceeeccc---CCCcceEEEEecCCC
Q psy8680 66 QQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITEN---TPKYQGVIVLNMNDV 138 (180)
Q Consensus 66 ~~~~~~~~~~~~~~a~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~riten---tp~~~GVvV~nmndv 138 (180)
+.||||.|++|++..+|+|++|.++||+.- +.+ ...|--|.++.+-. -.+..++||+|..|+
T Consensus 105 ~~flyG~nVfk~~V~~i~e~i~~~~~VvV~---n~~--------d~pLG~G~a~~s~~e~~~~~~~~~vv~~q~D~ 169 (188)
T 1sqw_A 105 QSFLYGNHVLKSGLGRITENTSQYQGVVVY---SMA--------DIPLGFGVAAKSTQDCRKVDPMAIVVFHQADI 169 (188)
T ss_dssp HHHTTTCCEEGGGEEEECTTCCTTCEEEEE---ETT--------CCEEEEEEESSCHHHHHHSCTTSEEEEEEEEG
T ss_pred eeEEeccchhHHhhhhcCCCCCCCCEEEEE---eCC--------CCEEEEEEeecCHHHHHhcCCCcEEEEEcccc
Confidence 479999999999999999999999999742 111 12233333322210 124478899988764
No 7
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}
Probab=97.09 E-value=0.0015 Score=51.15 Aligned_cols=63 Identities=24% Similarity=0.298 Sum_probs=55.0
Q ss_pred EeeecCcccceeecccccccccceeecccCCCcceEEEEec-CCCceeeEeeecchhHhhhcCC
Q psy8680 95 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM-NDVPLGFGVAAKSTAECKLADP 157 (180)
Q Consensus 95 ~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nm-ndvpLGFGvaakst~e~k~~dp 157 (180)
+|.|...|+.--+.|.+++-.|+..+..++.+.+-|.|++. ++.++|.|++.-|++|.+..+.
T Consensus 96 ~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~~~~g~~iavG~~~~ss~e~~~~~k 159 (179)
T 3d79_A 96 RVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVEEKYGRPLAIGIALMSGKVMKEKNR 159 (179)
T ss_dssp EEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEETTTCCEEEEEEESSCHHHHHHCSS
T ss_pred EEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEECCCCeEEEEEEEEcCHHHHHhcCC
Confidence 44555577766678999999999999999999999999998 8999999999999999987554
No 8
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A
Probab=96.99 E-value=0.00085 Score=53.27 Aligned_cols=58 Identities=19% Similarity=0.234 Sum_probs=51.5
Q ss_pred EeeecCcccceeecccccccccceeecccCCCcceEEEEec-CCCceeeEeeecchhHh
Q psy8680 95 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNM-NDVPLGFGVAAKSTAEC 152 (180)
Q Consensus 95 ~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nm-ndvpLGFGvaakst~e~ 152 (180)
+|.|...|..--+.|.+++..|+..+.+++.+.+-|.|.+. ++.++|.|++.-|++|.
T Consensus 94 ~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~~~~g~~iA~G~~~~ss~ei 152 (187)
T 2cx0_A 94 VVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALYHETRTPVMVGVAEVDSSAL 152 (187)
T ss_dssp EEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEETTTTEEEEEEEESSCHHHH
T ss_pred EEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEECCCCeEEEEEEEecCHHHH
Confidence 44455577766668999999999999999999999999999 79999999999999998
No 9
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A
Probab=96.66 E-value=0.0029 Score=58.13 Aligned_cols=62 Identities=23% Similarity=0.131 Sum_probs=55.5
Q ss_pred cccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeEEEE
Q psy8680 101 QAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGF 163 (180)
Q Consensus 101 ~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~iVvf 163 (180)
.|...-+.|.+++-.||..+..++.+.+-|.|.+.++.++|.|++.-|++|.+..+. +++|.
T Consensus 515 gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~~~~g~~ia~G~a~~ss~ei~~~~k-G~aV~ 576 (582)
T 1iq8_A 515 EAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQALLSGREMIVFQY-GRAVK 576 (582)
T ss_dssp TTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCCS-SEEEE
T ss_pred hHHHHHhcCCCcCCCceEecCCCcCCCCEEEEEeCCCCEEEEEEEeeCHHHHHhcCC-ceEEE
Confidence 777777789999999999999999999999999999999999999999999998764 44543
No 10
>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}
Probab=96.52 E-value=0.0024 Score=51.04 Aligned_cols=69 Identities=22% Similarity=0.132 Sum_probs=58.9
Q ss_pred EeeecCcccceeecccccccccceeecc---cCCCcceEEEEec-CCCceeeEeeecchhHhhhcCCCeEEEEe
Q psy8680 95 KVWVKPQAEQQFLYGHNILKSGLARITE---NTPKYQGVIVLNM-NDVPLGFGVAAKSTAECKLADPLAIVGFN 164 (180)
Q Consensus 95 ~~~~~~~aE~~FLYG~~vlKs~l~rite---ntp~~~GVvV~nm-ndvpLGFGvaakst~e~k~~dp~~iVvfn 164 (180)
+|.|.+.+..--+.|.|++--||....+ ++.+++-|+|++. ++.|++.|++.-|++|.+..+ .++++.+
T Consensus 94 ~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~~~~~~~vAVG~a~mss~e~~~~~-kG~aV~v 166 (188)
T 3r90_A 94 HQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMAAGAAHALCVGVMKMSAEDIEKVN-KGIGIEN 166 (188)
T ss_dssp EEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEETTCSSCSEEEEESSCHHHHHHHC-CSEEEEE
T ss_pred EEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEECCCCcEEEEEEEEeCHHHHhhcC-CcEEEEE
Confidence 5667778888888999999999998886 8899999999999 899999999999999998764 4555544
No 11
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A
Probab=95.03 E-value=0.022 Score=51.14 Aligned_cols=75 Identities=21% Similarity=0.341 Sum_probs=62.3
Q ss_pred eeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCCeEEEEe---cccceee
Q psy8680 96 VWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPLAIVGFN---QSDIGEY 171 (180)
Q Consensus 96 ~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~~iVvfn---qaDiGEY 171 (180)
|.++..+...+.+|+.+...++.+..++++..+.|+|++.++.+||.|.+..|+++...++. ++|+.+ ..|.|-|
T Consensus 269 V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVvt~kGelLAIG~A~mss~em~~~~~-G~vvk~~rV~m~~~~y 346 (400)
T 3u28_A 269 IVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLITTKGEAIAVAIAQMSTVDLASCDH-GVVASVKRCIMERDLY 346 (400)
T ss_dssp EEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEECTTCCEEEEEEESSCHHHHHHCSS-SEEEEEEEECSCTTSS
T ss_pred cccCHHHHHHHHCcCccccCccccccccCCCCCEEEEEeCCCcEEEEEEEEeCHHHHhhcCC-cEEEEEEEEeecCCCC
Confidence 45566777889999999999999999999999999999999999999999999999999876 555543 2344544
No 12
>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}
Probab=93.36 E-value=0.034 Score=43.95 Aligned_cols=55 Identities=20% Similarity=0.233 Sum_probs=38.1
Q ss_pred hhhhccccccccccceeccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCC
Q psy8680 66 QQFLYGHNILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDV 138 (180)
Q Consensus 66 ~~~~~~~~~~~~~~a~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndv 138 (180)
++||||.+++++|..+++ +|.++||..- +.+ +..|--|++..+ ..|.+|.|-.|+
T Consensus 106 ~~flyG~dV~k~gI~~~~--~~~~~~VvV~---~~~--------~~pLG~G~a~~s-----~~gkvv~n~~dv 160 (166)
T 2p38_A 106 FLFTTGKDAPKEAVREIK--WQGSKRVVVL---NDL--------GDIIGIGLINPK-----SDRRFIKNLKDV 160 (166)
T ss_dssp HHHHTTCCBCGGGEEEEE--CSSCSEEEEE---CTT--------SCEEEEEEECTT-----CSTTSEEEEEC-
T ss_pred EeeecCCCcchhcceEEe--ecCCCEEEEE---ECC--------CcEEEEEEEEEC-----CCCEEEEEcccc
Confidence 569999999999999999 9999998754 111 223334444444 456677776654
No 13
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=93.13 E-value=0.1 Score=45.01 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=50.0
Q ss_pred cccceee-cccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcC
Q psy8680 101 QAEQQFL-YGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLAD 156 (180)
Q Consensus 101 ~aE~~FL-YG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~d 156 (180)
.|..--+ -|..+|-+|+..+..++.+.+-|.|++.++.++|-|.+..|.+|+++.-
T Consensus 283 gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~~~~g~~ia~G~~~y~s~e~~~~~ 339 (367)
T 2j5v_A 283 GATAAILERGSSLLPKGIKSVTGNFSRGEVIRICNLEGRDIAHGVSRYNSDALRRIA 339 (367)
T ss_dssp HHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEEETTCCEEEEEECSSCHHHHHHHT
T ss_pred CHHHHHHhCCCccCCcccEEEECcccCCCEEEEECCCCCEEEEEEecCCHHHHHHHh
Confidence 5665555 5889999999999999999999999999999999999999999987543
No 14
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}
Probab=92.96 E-value=0.18 Score=44.58 Aligned_cols=98 Identities=15% Similarity=0.254 Sum_probs=64.7
Q ss_pred CCeEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhcccccceeEEeccccchhhhccccccccccce
Q psy8680 2 RDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQFKVWVKPQADQQFLYGHNILKSGLAR 81 (180)
Q Consensus 2 ~~RVyYvse~il~~a~~~~~d~LlslGtc~GKFtKsgKFrl~ItaL~~LA~ya~~KVWvKp~~~~~~~~~~~~~~~~~a~ 81 (180)
.+++|++.+.+..+. +.-+++..|..+|++.| ++|+.+-...-.|.+.+. ++
T Consensus 361 ~~~~~~~p~~~~~~~---~~lr~~r~G~~lg~~kk-~rf~Ps~~la~~l~~~~~-----~~------------------- 412 (479)
T 2frx_A 361 DKELWLFPVGIEALI---GKVRFSRLGIKLAETHN-KGYRWQHEAVIALASPDN-----MN------------------- 412 (479)
T ss_dssp SSEEEEEEHHHHTTB---TTBCCSEESEEEEEEET-TEEEECHHHHHHHBCSSS-----SS-------------------
T ss_pred CCEEEEeccccchhc---cCcEEEecceEEEEEec-CCceEcHHHHHhcchhhc-----Cc-------------------
Confidence 478999998765443 44588999999999977 789998765555655543 22
Q ss_pred eccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecc
Q psy8680 82 ITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKS 148 (180)
Q Consensus 82 i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaaks 148 (180)
.+-++...-..||-|+.|--+ +. ...|-+++.-++.|||||....+
T Consensus 413 -------------~~~l~~~~~~~yL~Ge~i~~~------~~--~~~G~vlv~~~g~pLG~gK~~g~ 458 (479)
T 2frx_A 413 -------------AFELTPQEAEEWYRGRDVYPQ------AA--PVADDVLVTFQHQPIGLAKRIGS 458 (479)
T ss_dssp -------------EEECCHHHHHHHHTTCCCCCS------SC--CSCSEEEEEETTEEEEEEECTTT
T ss_pred -------------EEECCHHHHHHHhcCCCCcCC------CC--CCCCEEEEEECCEeeEEEEeeCC
Confidence 001111223467777776421 11 23677777789999999998644
No 15
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}
Probab=92.61 E-value=0.18 Score=44.69 Aligned_cols=93 Identities=19% Similarity=0.333 Sum_probs=62.1
Q ss_pred CCeEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhcccccce-eEEeccccchhhhccccccccccc
Q psy8680 2 RDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQF-KVWVKPQADQQFLYGHNILKSGLA 80 (180)
Q Consensus 2 ~~RVyYvse~il~~a~~~~~d~LlslGtc~GKFtKsgKFrl~ItaL~~LA~ya~~-KVWvKp~~~~~~~~~~~~~~~~~a 80 (180)
.++||++.+.+. .+..-+++..|..+|++.| ++|+.+-...-.|++-... .+=+
T Consensus 349 ~~~~~~~p~~~~----~~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~l-------------------- 403 (456)
T 3m4x_A 349 NDHLWEVPELAP----SLDGLKVVRTGLHLGDFKK-NRFEPSYALALATKKIENIPCLPI-------------------- 403 (456)
T ss_dssp TTEEEEECTTCC----CCTTCCEEEESEEEEEEET-TEEEECHHHHHTCCCGGGSCEEEE--------------------
T ss_pred CCEEEEeccCcc----cccCCeEEEcCceeeEEeC-CceeECHHHHHhcCccccCcEEEc--------------------
Confidence 578899887542 3466789999999999876 7899885543344443321 1111
Q ss_pred eeccCCCCccceeeEeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeec
Q psy8680 81 RITENTPKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAK 147 (180)
Q Consensus 81 ~i~e~~~~~~~~~~~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaak 147 (180)
+...-..||-|+.|-- ++ ..|-+++.-++.|||||....
T Consensus 404 ------------------~~~~~~~yl~ge~i~~------~~----~~g~~lv~~~g~~lG~~k~~~ 442 (456)
T 3m4x_A 404 ------------------TQKEWQSYTAGETFQR------DG----NQGWVLLVLDKIPVGFGKQVK 442 (456)
T ss_dssp ------------------CHHHHHHHHHTCCEEC------SC----CCEEEEEEETTEEEEEEEEET
T ss_pred ------------------CHHHHHHHhCCCCccc------CC----CCCEEEEEECCEeEEEEEeeC
Confidence 1133456888887642 21 268888888999999998754
No 16
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*
Probab=89.20 E-value=0.24 Score=44.03 Aligned_cols=95 Identities=18% Similarity=0.262 Sum_probs=60.4
Q ss_pred CCeEEEEcHHHHhhhcccCCCCeeeeeeeeeeeeecceEEEEeeehhhcccc----cc-eeEEeccccchhhhccccccc
Q psy8680 2 RDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPY----AQ-FKVWVKPQADQQFLYGHNILK 76 (180)
Q Consensus 2 ~~RVyYvse~il~~a~~~~~d~LlslGtc~GKFtKsgKFrl~ItaL~~LA~y----a~-~KVWvKp~~~~~~~~~~~~~~ 76 (180)
.++||++.+.+.. +..-+++..|..+|++.| ++|+.+-...-.|++- .. ..+=+..
T Consensus 342 ~~~~~~~p~~~~~----~~~l~~~r~G~~lg~~kk-~~f~p~~~la~~l~~~~~~~~~~~~~~l~~-------------- 402 (464)
T 3m6w_A 342 AGHLYLLPEGLPT----LLGLKAPAPGLYLGKVQK-GRFLPARALALAFGATLPWPEGLPRLALTP-------------- 402 (464)
T ss_dssp TTEEEECCTTCBC----CTTSCCSBSSEEEEEEET-TEEEEBHHHHHHBTTTBCCCTTSCEEEECT--------------
T ss_pred CCEEEEeccCccc----ccCCeEEEccceeeEEeC-CceeECHHHHHhcCcccccccccceEEecc--------------
Confidence 4778888875433 355688999999999876 8899886544444443 11 1111211
Q ss_pred cccceeccCCCCccceeeEeeecCccc--ceeecccccccccceeecccCCCcceEEEE----ecCCCceeeEeeecc
Q psy8680 77 SGLARITENTPKYQGVIFKVWVKPQAE--QQFLYGHNILKSGLARITENTPKYQGVIVL----NMNDVPLGFGVAAKS 148 (180)
Q Consensus 77 ~~~a~i~e~~~~~~~~~~~~~~~~~aE--~~FLYG~~vlKs~l~ritentp~~~GVvV~----nmndvpLGFGvaaks 148 (180)
..| ..||-|+.|-- ++ ...|.+++ .-++.|||||....+
T Consensus 403 ------------------------~~~~~~~yl~ge~i~~------~~---~~~G~~lv~~~~~~~g~~lG~~k~~g~ 447 (464)
T 3m6w_A 403 ------------------------EDPRALAFATGEGVAW------EG---EDHPLALVVLKTAAGEFPLDFGKAKRG 447 (464)
T ss_dssp ------------------------TSHHHHHHHTTCCEEC------CS---CCEEEEEEEEEETTEEEEEEEEEEETT
T ss_pred ------------------------cHHHHHHHHCCCCccC------CC---CCCceEEEeeccEECCEeeEEEEccCC
Confidence 221 36888888642 22 12577777 778999999987643
No 17
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=87.65 E-value=0.64 Score=38.75 Aligned_cols=54 Identities=13% Similarity=0.206 Sum_probs=41.4
Q ss_pred eeecCcccceeecccc-cccccceeecccCCCcceEEEEecCCCceeeEeeecch
Q psy8680 96 VWVKPQAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST 149 (180)
Q Consensus 96 ~~~~~~aE~~FLYG~~-vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst 149 (180)
|.+++.+|...+-||. |.+..+.++..+....+-|.|.+.++.+||.|...+.+
T Consensus 5 ~~l~~~~~~~~~~~~pwv~~~~i~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s 59 (396)
T 3c0k_A 5 LVLAKGREKSLLRRHPWVFSGAVARMEGKASLGETIDIVDHQGKWLARGAYSPAS 59 (396)
T ss_dssp EEECTTCCHHHHTTCSEEEGGGEEEEESCCCTTCEEEEECTTCCEEEEEEECTTS
T ss_pred EEECchHHHHHhcCCCeEEhhHhhcccCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 4455577777777777 67777777777777777899999999999999987654
No 18
>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Probab=86.88 E-value=1.1 Score=38.50 Aligned_cols=63 Identities=22% Similarity=0.318 Sum_probs=49.7
Q ss_pred eeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCCC
Q psy8680 96 VWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADPL 158 (180)
Q Consensus 96 ~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp~ 158 (180)
|-++..+...+..|+.+...++....++.+..+.|.|++.++.+||.|.+..|..|....+..
T Consensus 253 V~L~de~a~~V~nGq~L~~~gv~~~~~~i~~gd~V~V~~~~G~fLAIGe~~~s~~e~~~~~~G 315 (334)
T 2aus_C 253 IWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIMTLKDELVALGKAMMSTQEMIERSKG 315 (334)
T ss_dssp EEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEEETTCCEEEEEEESSCHHHHHHCSSS
T ss_pred EEECHHHHHHHHCCCccccCcccccccccCCCCEEEEEecCCeEEEEEEeccCchhccccCCC
Confidence 445557788899999998777766777777777799999999999999987787777665543
No 19
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2
Probab=86.06 E-value=1.2 Score=39.06 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=49.9
Q ss_pred EeeecCcccceeecccccccccceeecccCCCcceEEEEecCCCceeeEeeecchhHhhhcCC
Q psy8680 95 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECKLADP 157 (180)
Q Consensus 95 ~~~~~~~aE~~FLYG~~vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst~e~k~~dp 157 (180)
+|-++.++...+.+|+.+...++.++.++.+..+.|.|++.++.+||.|.+..++.+....+.
T Consensus 271 ~v~l~~~~~~~i~nG~~L~~pgi~~~~~~i~~gd~V~v~~~~G~flAIGea~~~~~ei~~~~k 333 (357)
T 2apo_A 271 KVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVETLKGEAVAVGKALMNTKEILNADK 333 (357)
T ss_dssp EEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEECTTSCEEEEEEESSCHHHHHHCSS
T ss_pred EEEECHHHHHHHhCcCccCCCcccccccccCCCCeEEEEcCCCEEEEEEEeccccccccccCC
Confidence 455666788899999999877777777777777779999999999999988767766665544
No 20
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}
Probab=59.57 E-value=7.2 Score=33.39 Aligned_cols=46 Identities=11% Similarity=0.042 Sum_probs=28.9
Q ss_pred cccceeecccc-cccccceeecccCCCcceEEEEecCCCceeeEeeecch
Q psy8680 101 QAEQQFLYGHN-ILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKST 149 (180)
Q Consensus 101 ~aE~~FLYG~~-vlKs~l~ritentp~~~GVvV~nmndvpLGFGvaakst 149 (180)
.+|..+.=||. |++..|.++.++ .+-|.|++.++.+||.|......
T Consensus 13 ~~~~~~~~g~pwi~~~~i~~~~~~---G~~v~v~~~~g~~lg~g~~~~~s 59 (393)
T 4dmg_A 13 GKERKLRNFYPNLYRDEIAAPPEG---VGVAEAVDAEGHFLAVGYYDPRS 59 (393)
T ss_dssp TCCHHHHTTCCEECGGGEEECCSS---SEEEEEECTTCCEEEEEEECTTS
T ss_pred chHHHHhcCCCEEEHHHhcCcCCC---CCEEEEEcCCCCEEEEEEECCCC
Confidence 55544444443 223345555543 56688899999999999985433
No 21
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51
Probab=56.65 E-value=9.8 Score=31.50 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=23.9
Q ss_pred eeecccCCCcceEEEEecCCCceeeEeeecch
Q psy8680 118 ARITENTPKYQGVIVLNMNDVPLGFGVAAKST 149 (180)
Q Consensus 118 ~ritentp~~~GVvV~nmndvpLGFGvaakst 149 (180)
.....+.+..+-|-|++.++.+||.|...+.+
T Consensus 27 ~~~~~~~~~g~~v~v~~~~g~~l~~G~~~~~s 58 (396)
T 2as0_A 27 VRVEGDIKPGDIVEVYTRGGKFLGKGFANPNS 58 (396)
T ss_dssp EEEESCCCTTCEEEEEETTCCEEEEEEECTTS
T ss_pred cccCCCCCCCCEEEEEcCCCCEEEEEEECCCC
Confidence 34434445667789999999999999987665
No 22
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}
Probab=28.74 E-value=40 Score=24.08 Aligned_cols=24 Identities=17% Similarity=0.038 Sum_probs=17.3
Q ss_pred eEEEEeeehhhc-cccc--ceeEEecc
Q psy8680 39 KFRLHITALSYL-APYA--QFKVWVKP 62 (180)
Q Consensus 39 KFrl~ItaL~~L-A~ya--~~KVWvKp 62 (180)
+|+|+|++-+-- .+.. +.+||.||
T Consensus 55 ~Y~L~l~~~~~~~~~~~~y~a~Vw~kp 81 (95)
T 2kxg_A 55 YYNLILSAKHSPHEFSKFYNVVVLEKA 81 (95)
T ss_dssp EEEEEEEEESCTTSCCEEEEEEEEEET
T ss_pred cEEEEEEEecCCCCCceEEEEEEEEcc
Confidence 799999987764 2222 46899998
No 23
>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*
Probab=23.90 E-value=48 Score=24.47 Aligned_cols=21 Identities=10% Similarity=0.037 Sum_probs=16.7
Q ss_pred eEEEEeeehhhcccccceeEEecc
Q psy8680 39 KFRLHITALSYLAPYAQFKVWVKP 62 (180)
Q Consensus 39 KFrl~ItaL~~LA~ya~~KVWvKp 62 (180)
.|||+|+|.+- --.-+||+||
T Consensus 60 nY~Ltlea~d~---~yeA~V~ekp 80 (97)
T 2o9u_X 60 EYQLYVYASDK---LFRADISEDY 80 (97)
T ss_dssp EEEEEEEETTE---EC-CEEEEET
T ss_pred EEEEEEEEeCC---ceEEEEEEec
Confidence 89999999886 2234899999
No 24
>3k5r_A Cadherin 13; mouse, structural protein; 2.00A {Mus musculus} PDB: 3k5s_A
Probab=23.05 E-value=1.5e+02 Score=22.44 Aligned_cols=17 Identities=18% Similarity=0.249 Sum_probs=10.6
Q ss_pred eccCCCCccceeeEeee
Q psy8680 82 ITENTPKYQGVIFKVWV 98 (180)
Q Consensus 82 i~e~~~~~~~~~~~~~~ 98 (180)
+|+|.|.+..-.+.+.|
T Consensus 101 vNDn~P~F~~~~y~~~v 117 (218)
T 3k5r_A 101 QNDNRPIFREGPYIGHV 117 (218)
T ss_dssp TTCCCCCCCSCSEEEEE
T ss_pred CCCCCCcccCCceEEEE
Confidence 67888887654444433
No 25
>2a62_A Cadherin-8; extracellular domain, homodimer, calcium binding, adhesion; 4.50A {Mus musculus}
Probab=20.72 E-value=2.7e+02 Score=22.72 Aligned_cols=13 Identities=23% Similarity=0.815 Sum_probs=8.5
Q ss_pred eccCCCCccceee
Q psy8680 82 ITENTPKYQGVIF 94 (180)
Q Consensus 82 i~e~~~~~~~~~~ 94 (180)
+|+|.|.+..-.+
T Consensus 208 vNDn~P~F~~~~y 220 (322)
T 2a62_A 208 VNDNPPKFAQSLY 220 (322)
T ss_dssp CCCCCCCCSCSEE
T ss_pred cCCCCCeecCCCc
Confidence 6788887764433
No 26
>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A
Probab=20.07 E-value=64 Score=21.57 Aligned_cols=24 Identities=21% Similarity=0.373 Sum_probs=17.2
Q ss_pred eEEEEeeehhhcccc--cceeEEecc
Q psy8680 39 KFRLHITALSYLAPY--AQFKVWVKP 62 (180)
Q Consensus 39 KFrl~ItaL~~LA~y--a~~KVWvKp 62 (180)
+|+|.+++-+-..+. ..++||.+|
T Consensus 49 ~Y~l~v~~~~~~~~~~~c~~~V~~~P 74 (87)
T 2w9q_A 49 MYYITLAATDDAGKKKIYKAKIWVKE 74 (87)
T ss_dssp EEEEEEEEEETTTEEEEEEEEEEEEG
T ss_pred EEEEEEEEecCCCCeEEEEEEEEEee
Confidence 888888887644432 346899998
Done!