RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8680
(180 letters)
>d1sqwa1 b.122.1.1 (A:95-170) Nip7p homolog, C-terminal domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 143 bits (363), Expect = 6e-46
Identities = 52/76 (68%), Positives = 66/76 (86%)
Query: 94 FKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAECK 153
+KVW+KP AEQ FLYG+++LKSGL RITENT +YQGV+V +M D+PLGFGVAAKST +C+
Sbjct: 1 YKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVYSMADIPLGFGVAAKSTQDCR 60
Query: 154 LADPLAIVGFNQSDIG 169
DP+AIV F+Q+DIG
Sbjct: 61 KVDPMAIVVFHQADIG 76
>d1sqwa2 d.17.6.3 (A:1-94) Nip7p homolog, N-terminal domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 104 bits (261), Expect = 3e-30
Identities = 38/55 (69%), Positives = 45/55 (81%)
Query: 1 MRDRVFYVSEKILTLAENFGPDHLLALGTCFGKFTKSGKFRLHITALSYLAPYAQ 55
DRV+YVSEKI+ LA N D L++LGTCFGKFTK+ KFRLH+TAL YLAPYA+
Sbjct: 40 HNDRVYYVSEKIMKLAANISGDKLVSLGTCFGKFTKTHKFRLHVTALDYLAPYAK 94
>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine
transglycosylase, C3 domain {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 77
Score = 35.6 bits (82), Expect = 3e-04
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 87 PKYQGVIFKVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAA 146
P+ +V V +AE G ++ + Y V+V+N ND L G A
Sbjct: 1 PRM-----RVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVVNENDELLATGQAL 55
Query: 147 KSTAECK 153
S E
Sbjct: 56 LSGREMI 62
>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423,
C-terminal domain {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 85
Score = 32.0 bits (73), Expect = 0.007
Identities = 12/57 (21%), Positives = 22/57 (38%)
Query: 95 KVWVKPQAEQQFLYGHNILKSGLARITENTPKYQGVIVLNMNDVPLGFGVAAKSTAE 151
V V AE L G ++ G+ + ++ K + V + + G+A E
Sbjct: 4 IVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKSSKGYFIAVGMAEMDAGE 60
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 26.3 bits (57), Expect = 2.1
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 151 ECKLAD---PLAIVGFNQSDIGEYIRYMTNML 179
E + P+ G + I YI ++ + L
Sbjct: 244 EKEYYSNSLPVEKFGMDLKSIHTYIEFVADGL 275
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia
trachomatis [TaxId: 813]}
Length = 317
Score = 25.9 bits (56), Expect = 2.7
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 150 AECKLAD---PLAIVGFNQSDIGEYIRYMTNML 179
E + A P I+G S +Y++++ +
Sbjct: 266 LEIEYAQDCLPRGILGLRASMFIDYVQHIADRR 298
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 25.9 bits (56), Expect = 3.3
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 152 CKLADPLAIVGFNQSDIGEYIRYMTN 177
L +++G N+ + +Y+ Y+TN
Sbjct: 288 DYLFRDGSMIGLNKDILCQYVEYITN 313
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 25.9 bits (56), Expect = 3.5
Identities = 6/30 (20%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 151 ECKLAD---PLAIVGFNQSDIGEYIRYMTN 177
E + P+A++G N + +Y+ ++ +
Sbjct: 282 EQRYFLDALPVALLGMNADLMNQYVEFVAD 311
>d1wxxa1 b.122.1.9 (A:1-64) Hypothetical protein TTHA1280,
N-terminal domain {Thermus thermophilus [TaxId: 274]}
Length = 64
Score = 23.9 bits (52), Expect = 3.5
Identities = 6/50 (12%), Positives = 15/50 (30%), Gaps = 5/50 (10%)
Query: 95 KVWVKPQAEQQFLYGH-NILKSGLARITENTPKYQGVIVLNMNDVPLGFG 143
++ V + + L H + + + E G+ + L
Sbjct: 2 RIQVNAKGAARLLSRHLWVFRRDVVSGPET----PGLYPVYWGRRFLALA 47
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 25.2 bits (54), Expect = 5.6
Identities = 6/23 (26%), Positives = 15/23 (65%)
Query: 155 ADPLAIVGFNQSDIGEYIRYMTN 177
A P+ ++G N + + +YI ++ +
Sbjct: 241 ALPVKLIGMNCTLMKQYIEFVAD 263
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase
{Bacillus smithii [TaxId: 1479]}
Length = 203
Score = 24.7 bits (54), Expect = 5.8
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 9/53 (16%)
Query: 92 VIFKVWVKPQAEQQFL---------YGHNILKSGLARITENTPKYQGVIVLNM 135
V+ K W P+ +Q+ L G+ L+ R+ ENT V+V +
Sbjct: 56 VVAKAWTDPEFKQRLLEDPETVLRELGYFGLQGEHIRVVENTDTVHNVVVCTL 108
>d1w5da1 e.3.1.3 (A:5-462) Penicillin-binding protein DacC {Bacillus
subtilis [TaxId: 1423]}
Length = 458
Score = 24.9 bits (53), Expect = 7.4
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 73 NILKSGLARITENTPKYQGVIFKVWVKPQAEQQFLYGHN 111
+ L + +I + P +G + + V+ LY H+
Sbjct: 1 DALSGQIDKILADHPALEGAMAGITVRSAETGAVLYEHS 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0582 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 654,594
Number of extensions: 28290
Number of successful extensions: 72
Number of sequences better than 10.0: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 14
Length of query: 180
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 100
Effective length of database: 1,309,196
Effective search space: 130919600
Effective search space used: 130919600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.4 bits)