BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8681
(521 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 32/118 (27%)
Query: 237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERAR 296
E+++ NP + DAW +R +++ D R+TYER +A P
Sbjct: 3 EKKLEENPYDLDAWSILIREAQNQP-IDKARKTYERLVAQFP------------------ 43
Query: 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQF 354
S R WK YI+ E+ DKV +L +R L + +H+ +W Y +
Sbjct: 44 -------SSGRF------WKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 77/179 (43%), Gaps = 35/179 (19%)
Query: 205 AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD 264
+++K Y EK R + +I + F YE+ + ++ D W++ + LE ++
Sbjct: 230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ--SSK 287
Query: 265 LIRETYERAIANIPPTKFAELESLLGDMERARA-------IYELAISQPRLDMPELVWKA 317
L+ E GDM A+ IYE AIS L L++ A
Sbjct: 288 LLAEK--------------------GDMNNAKLFSDEAANIYERAIST-LLKKNMLLYFA 326
Query: 318 YIDFEVGQGERDKVRELHERLL--ERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374
Y D+E + + +KV ++ RLL E V++ Y +F + + + R +F++A
Sbjct: 327 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA---EGIKSGRMIFKKA 382
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 151 IAFAKFEEGQREKYGDRAGIEDVIVSKRKF--QYEEHERARVIYKYALDH--IPKDRTAE 206
+AF FE G + KYGD I + +++ + E RV+++ L +P +++ E
Sbjct: 409 VAFKIFELGLK-KYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 464
Query: 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKF 234
I+ + E GD A I + V KR+F
Sbjct: 465 IWARFLAFESNIGDLASI--LKVEKRRF 490
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 21/171 (12%)
Query: 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267
+K Y EK R + +I + F YE+ + ++ D W++ + LE
Sbjct: 11 WKKYIQWEKSNPLRTEDQTLITKRVXFAYEQCLLVLGHHPDIWYEAAQYLEQSS------ 64
Query: 268 ETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE 327
+ +A A+L S + A IYE AIS L L++ AY D+E + +
Sbjct: 65 ----KLLAEKGDXNNAKLFS-----DEAANIYERAIST-LLKKNXLLYFAYADYEESRXK 114
Query: 328 RDKVRELHERLL--ERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376
+KV ++ RLL E V++ Y +F + + + R +F++A +
Sbjct: 115 YEKVHSIYNRLLAIEDIDPTLVYIQYXKFARRA---EGIKSGRXIFKKARE 162
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 10/88 (11%)
Query: 151 IAFAKFEEGQREKYGDRAGIEDVIVSKRKF--QYEEHERARVIYKYALDH--IPKDRTAE 206
+AF FE G + KYGD I + +++ + E RV+++ L +P +++ E
Sbjct: 187 VAFKIFELGLK-KYGD---IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE 242
Query: 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKF 234
I+ + E GD A I + V KR+F
Sbjct: 243 IWARFLAFESNIGDLASI--LKVEKRRF 268
>pdb|3FEH|A Chain A, Crystal Structure Of Full Length Centaurin Alpha-1
pdb|3LJU|X Chain X, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Head Group Of Pip3
Length = 386
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 391 LEAWKE----FEAQHGDDESRAKLNSKLP 415
L+AW+E F A HG+D +RA+ SK+P
Sbjct: 78 LDAWEEAQVEFMASHGNDAARARFESKVP 106
>pdb|3FM8|C Chain C, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3FM8|D Chain D, Crystal Structure Of Full Length Centaurin Alpha-1 Bound
With The Fha Domain Of Kif13b (Capri Target)
pdb|3MDB|C Chain C, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
pdb|3MDB|D Chain D, Crystal Structure Of The Ternary Complex Of Full Length
Centaurin Alpha-1, Kif13b Fha Domain, And Ip4
Length = 392
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 4/29 (13%)
Query: 391 LEAWKE----FEAQHGDDESRAKLNSKLP 415
L+AW+E F A HG+D +RA+ SK+P
Sbjct: 80 LDAWEEAQVEFMASHGNDAARARFESKVP 108
>pdb|3PYW|A Chain A, The Structure Of The Slh Domain From B. Anthracis Surface
Array Protein At 1.8a
Length = 203
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 263 ADLIRETY--ERAIANIPPTKFAELESLLGDMERARAIYELAIS 304
A L+ E Y + + P TKF +LE+L E+A + EL IS
Sbjct: 106 ASLLVEAYKLDTKVNGTPATKFKDLETLNWGKEKANILVELGIS 149
>pdb|4G3T|A Chain A, Mycobacterium Smegmatis Dpre1 - Hexagonal Crystal Form
pdb|4G3U|A Chain A, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
pdb|4G3U|B Chain B, Mycobacterium Smegmatis Dpre1 - Monoclinic Crystal Form
Length = 403
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 277 IPPTKFAELESLLGDMERARAIYELAI-------SQPRLDMPELVWKAYIDFEVGQGERD 329
+P E +S++ D++R+ L + +Q L P W +DF + G +
Sbjct: 281 VPTEAVEEFKSIIVDIQRSGHYSFLNVFKLFGPGNQAPLSFPIPGWNVCVDFPIKAGLHE 340
Query: 330 KVRELHERLLE 340
V EL R+LE
Sbjct: 341 FVTELDRRVLE 351
>pdb|4AUT|A Chain A, Crystal Structure Of The Tuberculosis Drug Target
Decaprenyl-Phosphoryl-Beta-D-Ribofuranose-2-
Oxidoreductase (Dpre1) From Mycobacterium Smegmatis
pdb|4F4Q|A Chain A, Crystal Structure Of M. Smegmatis Dpre1 In Complex With
Fad And Covalently Bound Btz043
Length = 468
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 7/71 (9%)
Query: 277 IPPTKFAELESLLGDMERARAIYELAI-------SQPRLDMPELVWKAYIDFEVGQGERD 329
+P E +S++ D++R+ L + +Q L P W +DF + G +
Sbjct: 346 VPTEAVEEFKSIIVDIQRSGHYSFLNVFKLFGPGNQAPLSFPIPGWNVCVDFPIKAGLHE 405
Query: 330 KVRELHERLLE 340
V EL R+LE
Sbjct: 406 FVTELDRRVLE 416
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,782,405
Number of Sequences: 62578
Number of extensions: 519050
Number of successful extensions: 1083
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 44
length of query: 521
length of database: 14,973,337
effective HSP length: 103
effective length of query: 418
effective length of database: 8,527,803
effective search space: 3564621654
effective search space used: 3564621654
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)