Query psy8681
Match_columns 521
No_of_seqs 395 out of 2240
Neff 8.6
Searched_HMMs 46136
Date Sat Aug 17 01:01:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8681.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8681hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1915|consensus 100.0 1.1E-96 2E-101 723.0 39.9 443 1-468 11-675 (677)
2 KOG0495|consensus 100.0 3.8E-32 8.2E-37 276.9 31.4 354 50-446 339-799 (913)
3 KOG1915|consensus 100.0 7.7E-32 1.7E-36 266.1 28.4 355 56-459 69-538 (677)
4 KOG0495|consensus 100.0 7.2E-28 1.6E-32 245.8 28.9 304 47-414 537-877 (913)
5 KOG2047|consensus 99.9 3.6E-24 7.9E-29 218.7 28.1 272 60-342 388-726 (835)
6 KOG2047|consensus 99.9 2.3E-23 4.9E-28 212.9 28.1 316 54-411 343-717 (835)
7 KOG4626|consensus 99.9 5.6E-20 1.2E-24 187.4 27.1 312 51-383 141-491 (966)
8 KOG1914|consensus 99.9 5.7E-19 1.2E-23 178.1 33.0 331 53-416 13-500 (656)
9 KOG1070|consensus 99.8 1.1E-18 2.4E-23 191.2 27.0 252 92-419 1441-1702(1710)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 1.2E-17 2.6E-22 190.1 37.2 345 49-414 488-897 (899)
11 TIGR02917 PEP_TPR_lipo putativ 99.8 4.9E-17 1.1E-21 185.1 37.0 182 183-380 615-802 (899)
12 KOG4626|consensus 99.8 9.9E-18 2.1E-22 171.2 27.2 183 184-381 267-455 (966)
13 TIGR00990 3a0801s09 mitochondr 99.8 9.1E-17 2E-21 177.0 36.3 251 91-381 309-575 (615)
14 TIGR00990 3a0801s09 mitochondr 99.8 1.7E-16 3.7E-21 174.9 38.1 326 65-414 135-568 (615)
15 PRK11447 cellulose synthase su 99.8 2.1E-16 4.5E-21 185.4 37.1 344 49-414 292-737 (1157)
16 PRK15174 Vi polysaccharide exp 99.8 3.1E-16 6.6E-21 173.1 35.8 293 69-381 54-385 (656)
17 PRK15174 Vi polysaccharide exp 99.8 3.6E-16 7.8E-21 172.6 35.7 289 86-414 52-378 (656)
18 PRK11788 tetratricopeptide rep 99.8 1.7E-15 3.7E-20 157.3 32.8 257 87-381 46-315 (389)
19 COG5107 RNA14 Pre-mRNA 3'-end 99.8 1.8E-15 3.8E-20 149.9 30.1 339 53-415 35-529 (660)
20 PRK11447 cellulose synthase su 99.7 4.9E-15 1.1E-19 173.9 36.1 214 180-414 396-697 (1157)
21 PRK11788 tetratricopeptide rep 99.7 1.5E-14 3.3E-19 150.2 32.9 283 56-376 32-346 (389)
22 KOG1258|consensus 99.7 1E-14 2.3E-19 150.5 29.9 319 51-407 70-494 (577)
23 PLN03218 maturation of RBCL 1; 99.7 1.4E-13 2.9E-18 157.3 38.9 326 66-414 415-780 (1060)
24 PF13429 TPR_15: Tetratricopep 99.7 1.7E-16 3.6E-21 157.7 12.7 248 87-378 19-278 (280)
25 PRK10049 pgaA outer membrane p 99.7 1.3E-13 2.7E-18 155.3 35.8 341 34-414 20-453 (765)
26 PRK10049 pgaA outer membrane p 99.7 8.2E-14 1.8E-18 156.8 33.8 308 49-383 72-462 (765)
27 PLN03081 pentatricopeptide (PP 99.7 1.1E-13 2.4E-18 154.8 33.0 319 65-415 131-489 (697)
28 PLN03081 pentatricopeptide (PP 99.7 1.8E-13 3.9E-18 153.1 34.5 366 55-457 154-593 (697)
29 PLN03077 Protein ECB2; Provisi 99.6 1.9E-13 4E-18 156.5 33.4 308 55-415 284-652 (857)
30 PLN03218 maturation of RBCL 1; 99.6 1.4E-12 3E-17 149.2 38.5 320 68-414 381-745 (1060)
31 PF13429 TPR_15: Tetratricopep 99.6 1.6E-15 3.5E-20 150.6 12.7 267 105-418 4-278 (280)
32 PLN03077 Protein ECB2; Provisi 99.6 1E-12 2.2E-17 150.4 36.0 363 57-452 321-750 (857)
33 KOG1070|consensus 99.6 4.6E-14 1E-18 155.5 23.0 212 129-414 1443-1660(1710)
34 PRK09782 bacteriophage N4 rece 99.6 5.8E-13 1.3E-17 151.2 31.0 247 90-380 490-743 (987)
35 PRK09782 bacteriophage N4 rece 99.6 1.5E-12 3.3E-17 147.8 32.9 231 109-382 476-711 (987)
36 KOG1258|consensus 99.6 1.2E-12 2.5E-17 135.6 28.4 317 49-414 21-392 (577)
37 KOG1914|consensus 99.6 6.8E-13 1.5E-17 134.7 24.1 296 99-445 10-486 (656)
38 KOG2396|consensus 99.6 1.4E-12 3E-17 131.6 25.8 252 95-379 90-561 (568)
39 KOG1126|consensus 99.6 3.5E-13 7.5E-18 140.2 20.7 274 91-381 334-624 (638)
40 KOG2076|consensus 99.5 8.5E-12 1.9E-16 133.6 30.8 246 89-375 152-510 (895)
41 PRK10747 putative protoheme IX 99.5 1.4E-11 2.9E-16 128.6 30.9 271 68-378 95-391 (398)
42 TIGR00540 hemY_coli hemY prote 99.5 2.9E-11 6.3E-16 126.7 33.1 271 66-378 93-400 (409)
43 KOG1155|consensus 99.5 5.5E-11 1.2E-15 119.1 32.0 268 88-377 239-536 (559)
44 COG3063 PilF Tfp pilus assembl 99.5 5.3E-12 1.1E-16 116.3 22.7 190 208-414 38-233 (250)
45 PRK12370 invasion protein regu 99.5 1.4E-11 3.1E-16 133.8 30.3 263 109-410 255-529 (553)
46 KOG2002|consensus 99.5 1.2E-11 2.5E-16 133.4 26.2 311 65-395 315-727 (1018)
47 PRK11189 lipoprotein NlpI; Pro 99.5 3.4E-11 7.4E-16 120.5 27.4 226 125-392 41-279 (296)
48 KOG1126|consensus 99.5 2.1E-12 4.6E-17 134.4 18.9 245 60-344 352-623 (638)
49 PRK12370 invasion protein regu 99.5 2.1E-11 4.5E-16 132.6 26.6 239 90-375 275-533 (553)
50 KOG0547|consensus 99.5 2E-11 4.3E-16 122.8 24.0 250 110-404 326-587 (606)
51 KOG0547|consensus 99.4 1.8E-11 3.9E-16 123.2 21.1 216 88-342 338-567 (606)
52 TIGR02521 type_IV_pilW type IV 99.4 1.2E-10 2.5E-15 110.5 25.7 195 147-378 31-233 (234)
53 KOG1173|consensus 99.4 3.3E-11 7.1E-16 123.4 22.6 249 69-382 256-523 (611)
54 PF05843 Suf: Suppressor of fo 99.4 1.4E-12 3.1E-17 129.1 12.3 126 285-418 10-137 (280)
55 TIGR02521 type_IV_pilW type IV 99.4 1.5E-10 3.2E-15 109.8 25.5 197 109-342 30-233 (234)
56 COG3063 PilF Tfp pilus assembl 99.4 1.7E-10 3.6E-15 106.5 23.4 198 110-344 35-239 (250)
57 KOG0128|consensus 99.4 2.2E-10 4.8E-15 121.9 27.1 349 51-417 106-564 (881)
58 PF05843 Suf: Suppressor of fo 99.4 1.5E-11 3.3E-16 121.8 17.1 137 148-344 2-139 (280)
59 PRK10747 putative protoheme IX 99.4 1.7E-09 3.6E-14 112.9 32.5 274 90-414 98-387 (398)
60 PRK11189 lipoprotein NlpI; Pro 99.4 5.2E-10 1.1E-14 112.0 27.3 228 90-356 40-280 (296)
61 PRK14574 hmsH outer membrane p 99.4 2E-09 4.3E-14 120.4 34.5 302 65-413 42-475 (822)
62 TIGR00540 hemY_coli hemY prote 99.3 1.9E-09 4.2E-14 112.9 31.4 281 86-414 94-396 (409)
63 KOG1155|consensus 99.3 7.2E-09 1.6E-13 104.1 33.1 308 86-410 174-529 (559)
64 PRK14574 hmsH outer membrane p 99.3 6.4E-09 1.4E-13 116.4 35.6 322 51-411 59-507 (822)
65 KOG1125|consensus 99.3 3.1E-10 6.6E-15 116.8 20.9 217 178-409 294-563 (579)
66 KOG2076|consensus 99.3 5.5E-09 1.2E-13 112.5 30.5 260 110-413 139-508 (895)
67 KOG1129|consensus 99.2 9.8E-10 2.1E-14 105.8 19.4 227 115-380 228-461 (478)
68 KOG2002|consensus 99.2 2.9E-08 6.2E-13 107.7 31.8 339 66-423 137-535 (1018)
69 KOG1174|consensus 99.2 1.8E-08 4E-13 99.8 27.7 273 105-402 226-519 (564)
70 KOG2396|consensus 99.2 8.2E-09 1.8E-13 104.7 25.4 119 105-258 46-185 (568)
71 COG2956 Predicted N-acetylgluc 99.2 9.4E-08 2E-12 92.4 30.9 273 86-404 45-331 (389)
72 KOG1125|consensus 99.2 3E-09 6.5E-14 109.6 20.7 230 86-329 295-559 (579)
73 COG5107 RNA14 Pre-mRNA 3'-end 99.1 6E-09 1.3E-13 104.2 21.1 273 105-420 36-365 (660)
74 KOG0128|consensus 99.1 6.9E-09 1.5E-13 110.7 22.5 298 86-414 123-523 (881)
75 COG2956 Predicted N-acetylgluc 99.1 2.4E-07 5.3E-12 89.5 27.7 252 70-360 48-330 (389)
76 cd05804 StaR_like StaR_like; a 99.1 1.6E-07 3.5E-12 96.2 28.2 281 60-378 8-337 (355)
77 cd05804 StaR_like StaR_like; a 99.0 4.6E-07 1E-11 92.9 31.0 205 107-343 2-217 (355)
78 KOG1156|consensus 99.0 9.3E-07 2E-11 92.5 32.5 281 86-378 51-435 (700)
79 KOG1173|consensus 99.0 1.9E-07 4E-12 96.3 26.5 232 109-383 243-490 (611)
80 KOG0624|consensus 99.0 1.8E-07 3.9E-12 90.9 24.8 272 86-382 82-375 (504)
81 KOG1840|consensus 99.0 5.8E-08 1.3E-12 102.2 22.6 165 86-276 209-396 (508)
82 TIGR03302 OM_YfiO outer membra 98.9 3E-07 6.5E-12 88.6 22.6 191 109-341 32-232 (235)
83 KOG1129|consensus 98.9 1.4E-07 3E-12 91.2 18.8 222 171-414 225-455 (478)
84 PLN02789 farnesyltranstransfer 98.9 6.2E-07 1.3E-11 90.2 24.6 182 89-307 50-252 (320)
85 TIGR03302 OM_YfiO outer membra 98.9 1.5E-07 3.2E-12 90.8 19.1 176 86-304 43-231 (235)
86 KOG1174|consensus 98.9 3.1E-07 6.8E-12 91.3 20.0 279 49-346 184-505 (564)
87 KOG2003|consensus 98.8 8.5E-07 1.8E-11 89.0 22.6 254 86-381 429-693 (840)
88 KOG2003|consensus 98.8 1.4E-06 3.1E-11 87.4 23.8 253 67-359 429-708 (840)
89 PRK15359 type III secretion sy 98.8 9.8E-08 2.1E-12 84.9 14.2 86 184-279 39-124 (144)
90 PLN02789 farnesyltranstransfer 98.8 4.4E-06 9.5E-11 84.1 27.4 209 111-355 38-265 (320)
91 KOG1127|consensus 98.8 1.4E-07 3.1E-12 102.4 17.3 155 92-281 474-630 (1238)
92 PRK15179 Vi polysaccharide bio 98.8 2.8E-07 6E-12 101.6 20.1 140 105-279 80-220 (694)
93 KOG1840|consensus 98.8 1.6E-06 3.6E-11 91.4 24.7 246 105-377 193-479 (508)
94 PRK10370 formate-dependent nit 98.8 2.6E-07 5.7E-12 86.7 16.8 114 235-382 61-178 (198)
95 KOG0548|consensus 98.8 8.6E-06 1.9E-10 83.9 28.5 295 66-381 11-459 (539)
96 COG3071 HemY Uncharacterized e 98.8 2.1E-05 4.6E-10 78.4 30.3 285 54-379 66-392 (400)
97 PRK15179 Vi polysaccharide bio 98.8 6.2E-07 1.3E-11 98.9 21.4 159 116-306 55-218 (694)
98 PRK10370 formate-dependent nit 98.8 2.2E-07 4.9E-12 87.1 15.5 44 236-279 133-176 (198)
99 KOG4162|consensus 98.8 4.1E-06 9E-11 89.4 25.8 131 247-382 650-788 (799)
100 KOG3060|consensus 98.8 3.4E-06 7.3E-11 79.3 22.3 177 110-352 49-232 (289)
101 PRK15359 type III secretion sy 98.8 3.3E-07 7.1E-12 81.5 15.3 123 97-258 14-137 (144)
102 KOG2376|consensus 98.8 2.5E-05 5.4E-10 81.3 30.7 137 314-458 378-534 (652)
103 KOG1156|consensus 98.7 5.3E-06 1.1E-10 87.0 25.6 251 89-381 20-287 (700)
104 KOG3060|consensus 98.7 3.3E-06 7.1E-11 79.4 21.7 157 184-381 67-224 (289)
105 KOG4162|consensus 98.7 3.4E-05 7.4E-10 82.6 30.1 117 288-413 662-779 (799)
106 KOG3617|consensus 98.7 2E-05 4.4E-10 84.4 27.7 330 51-424 749-1181(1416)
107 PRK14720 transcript cleavage f 98.6 8.2E-06 1.8E-10 91.1 24.6 252 105-410 25-280 (906)
108 KOG0624|consensus 98.6 7.4E-05 1.6E-09 73.2 26.9 275 68-382 30-341 (504)
109 PF12569 NARP1: NMDA receptor- 98.6 5.7E-05 1.2E-09 80.7 28.7 77 111-214 5-81 (517)
110 KOG1128|consensus 98.6 2.8E-06 6E-11 90.2 17.8 198 65-305 406-616 (777)
111 KOG1128|consensus 98.6 1.7E-06 3.7E-11 91.7 15.8 188 111-342 425-617 (777)
112 TIGR02552 LcrH_SycD type III s 98.5 2.1E-06 4.6E-11 75.0 13.2 86 184-279 32-117 (135)
113 PF12569 NARP1: NMDA receptor- 98.5 0.00033 7.2E-09 74.9 31.8 267 62-342 8-335 (517)
114 TIGR02552 LcrH_SycD type III s 98.5 4.6E-06 9.9E-11 72.8 15.0 112 191-343 5-116 (135)
115 PF08424 NRDE-2: NRDE-2, neces 98.5 1.2E-05 2.6E-10 81.4 19.7 162 231-411 3-177 (321)
116 KOG1127|consensus 98.5 2.5E-05 5.3E-10 85.5 22.8 55 86-142 572-628 (1238)
117 PF08424 NRDE-2: NRDE-2, neces 98.4 8.2E-06 1.8E-10 82.5 16.9 134 184-342 46-184 (321)
118 PRK14720 transcript cleavage f 98.4 3.9E-05 8.4E-10 85.8 23.4 222 86-356 41-268 (906)
119 KOG0548|consensus 98.4 0.0004 8.8E-09 71.9 27.2 262 87-381 13-425 (539)
120 KOG0550|consensus 98.4 2.9E-05 6.3E-10 77.7 18.3 268 86-380 59-353 (486)
121 COG5010 TadD Flp pilus assembl 98.3 6.7E-05 1.5E-09 71.2 18.8 144 184-339 81-229 (257)
122 COG5010 TadD Flp pilus assembl 98.3 8.1E-05 1.8E-09 70.6 18.2 167 99-303 57-229 (257)
123 KOG3617|consensus 98.3 7.6E-05 1.7E-09 80.1 19.4 257 68-375 811-1172(1416)
124 COG4783 Putative Zn-dependent 98.3 0.00011 2.4E-09 75.3 19.8 138 184-350 321-464 (484)
125 COG3071 HemY Uncharacterized e 98.2 0.0043 9.4E-08 62.3 28.9 207 184-414 133-387 (400)
126 PRK15363 pathogenicity island 98.2 4.3E-05 9.2E-10 67.8 13.2 84 184-277 50-133 (157)
127 cd00189 TPR Tetratricopeptide 98.2 3.3E-05 7.1E-10 61.0 11.5 86 184-279 15-100 (100)
128 PRK04841 transcriptional regul 98.1 0.0025 5.5E-08 73.8 31.2 293 86-414 419-757 (903)
129 PRK04841 transcriptional regul 98.1 0.001 2.2E-08 77.1 27.8 262 86-382 462-765 (903)
130 PF09976 TPR_21: Tetratricopep 98.1 0.00015 3.3E-09 64.3 16.2 101 236-339 34-145 (145)
131 COG4783 Putative Zn-dependent 98.1 0.00035 7.6E-09 71.7 19.5 138 206-353 307-449 (484)
132 PRK15363 pathogenicity island 98.1 5.5E-05 1.2E-09 67.1 12.0 93 206-306 36-133 (157)
133 PLN03088 SGT1, suppressor of 98.1 3.5E-05 7.5E-10 79.2 12.0 91 181-281 14-104 (356)
134 PRK11906 transcriptional regul 98.0 0.00037 8E-09 71.8 18.6 155 184-341 273-436 (458)
135 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00016 3.5E-09 61.0 13.8 110 110-249 2-112 (119)
136 PF14938 SNAP: Soluble NSF att 98.0 0.00063 1.4E-08 67.6 20.1 144 254-414 101-260 (282)
137 PLN03088 SGT1, suppressor of 98.0 0.00013 2.8E-09 74.9 15.3 108 114-256 6-113 (356)
138 KOG0553|consensus 98.0 3.3E-05 7.2E-10 74.6 9.9 92 180-281 92-183 (304)
139 PF09976 TPR_21: Tetratricopep 98.0 0.00019 4.1E-09 63.8 13.5 114 259-375 23-145 (145)
140 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00016 3.6E-09 61.0 12.6 90 184-281 17-110 (119)
141 PF13432 TPR_16: Tetratricopep 97.9 3.6E-05 7.9E-10 58.0 7.2 61 212-280 4-64 (65)
142 PRK10153 DNA-binding transcrip 97.9 0.00063 1.4E-08 73.1 18.7 144 236-382 326-487 (517)
143 cd00189 TPR Tetratricopeptide 97.9 0.00024 5.3E-09 55.8 11.7 98 112-244 2-99 (100)
144 PF13414 TPR_11: TPR repeat; P 97.9 5.8E-05 1.3E-09 57.6 7.5 65 206-278 4-69 (69)
145 KOG2376|consensus 97.9 0.042 9.1E-07 58.0 30.2 328 61-415 49-518 (652)
146 PF04733 Coatomer_E: Coatomer 97.9 0.0036 7.8E-08 62.3 21.6 143 236-382 118-270 (290)
147 CHL00033 ycf3 photosystem I as 97.8 0.00068 1.5E-08 61.7 15.2 99 92-216 15-117 (168)
148 PF13432 TPR_16: Tetratricopep 97.8 7.9E-05 1.7E-09 56.1 7.5 60 319-381 4-64 (65)
149 PF02184 HAT: HAT (Half-A-TPR) 97.8 2E-05 4.3E-10 49.5 3.3 30 327-356 2-31 (32)
150 PF13525 YfiO: Outer membrane 97.8 0.0013 2.8E-08 61.9 17.3 185 110-360 5-193 (203)
151 KOG0553|consensus 97.8 0.00029 6.2E-09 68.2 12.5 109 117-260 88-196 (304)
152 COG5191 Uncharacterized conser 97.8 0.0001 2.2E-09 71.2 9.2 154 231-402 35-190 (435)
153 PRK02603 photosystem I assembl 97.8 0.00063 1.4E-08 62.2 14.2 114 109-247 34-154 (172)
154 PF13414 TPR_11: TPR repeat; P 97.8 0.00011 2.5E-09 55.9 7.8 65 312-379 3-69 (69)
155 PRK10153 DNA-binding transcrip 97.8 0.0013 2.7E-08 70.8 18.4 149 105-281 331-487 (517)
156 PRK10866 outer membrane biogen 97.7 0.0058 1.3E-07 59.2 20.7 50 319-371 182-235 (243)
157 PF13525 YfiO: Outer membrane 97.7 0.0013 2.8E-08 61.9 15.9 154 86-281 15-175 (203)
158 PF09295 ChAPs: ChAPs (Chs5p-A 97.7 0.00059 1.3E-08 70.4 14.4 121 114-272 173-293 (395)
159 PRK10803 tol-pal system protei 97.7 0.00069 1.5E-08 66.3 14.2 38 245-282 215-252 (263)
160 PF04733 Coatomer_E: Coatomer 97.7 0.00025 5.4E-09 70.6 11.1 155 88-281 114-270 (290)
161 PF14938 SNAP: Soluble NSF att 97.7 0.013 2.8E-07 58.2 23.1 203 110-374 35-263 (282)
162 PF02184 HAT: HAT (Half-A-TPR) 97.7 2E-05 4.3E-10 49.5 1.7 29 91-121 2-31 (32)
163 PRK02603 photosystem I assembl 97.7 0.0014 3E-08 59.9 14.5 116 147-307 35-151 (172)
164 PF08311 Mad3_BUB1_I: Mad3/BUB 97.6 0.00096 2.1E-08 57.7 12.0 111 233-375 5-126 (126)
165 PRK10803 tol-pal system protei 97.6 0.00057 1.2E-08 66.9 11.5 93 87-203 154-251 (263)
166 KOG0550|consensus 97.6 0.00056 1.2E-08 68.8 11.4 56 249-304 289-349 (486)
167 PF12895 Apc3: Anaphase-promot 97.6 0.00024 5.2E-09 56.6 7.4 82 183-273 3-84 (84)
168 CHL00033 ycf3 photosystem I as 97.6 0.0016 3.4E-08 59.3 13.7 88 185-280 15-105 (168)
169 COG4235 Cytochrome c biogenesi 97.6 0.0031 6.6E-08 61.5 16.0 116 236-353 145-268 (287)
170 PRK10866 outer membrane biogen 97.6 0.0079 1.7E-07 58.3 18.9 67 86-154 42-113 (243)
171 COG4235 Cytochrome c biogenesi 97.6 0.0024 5.3E-08 62.2 15.0 100 195-304 148-255 (287)
172 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.0025 5.4E-08 65.8 15.3 116 252-372 174-292 (395)
173 PF12895 Apc3: Anaphase-promot 97.5 0.00024 5.1E-09 56.7 6.1 82 289-374 2-84 (84)
174 COG3898 Uncharacterized membra 97.5 0.078 1.7E-06 53.4 24.2 243 65-377 128-392 (531)
175 PF14559 TPR_19: Tetratricopep 97.4 0.00027 5.8E-09 53.6 5.0 64 87-155 2-67 (68)
176 COG5191 Uncharacterized conser 97.4 0.00029 6.3E-09 68.2 5.7 92 99-218 97-189 (435)
177 PRK11906 transcriptional regul 97.4 0.0091 2E-07 61.8 16.9 131 125-280 273-405 (458)
178 COG3898 Uncharacterized membra 97.4 0.21 4.6E-06 50.4 26.8 49 364-422 345-394 (531)
179 PF14559 TPR_19: Tetratricopep 97.3 0.00064 1.4E-08 51.5 6.5 64 182-255 4-67 (68)
180 PF13371 TPR_9: Tetratricopept 97.3 0.00078 1.7E-08 51.8 6.9 58 216-281 6-63 (73)
181 KOG0543|consensus 97.2 0.0076 1.7E-07 60.9 14.4 30 112-141 210-239 (397)
182 PF13431 TPR_17: Tetratricopep 97.2 0.00049 1.1E-08 44.7 3.6 32 236-267 2-33 (34)
183 KOG2053|consensus 97.2 0.53 1.1E-05 52.3 28.2 219 86-345 19-259 (932)
184 COG4700 Uncharacterized protei 97.2 0.029 6.3E-07 50.9 15.6 131 249-379 91-228 (251)
185 PF13371 TPR_9: Tetratricopept 97.1 0.0019 4.1E-08 49.6 7.3 59 321-382 4-63 (73)
186 PF12688 TPR_5: Tetratrico pep 97.1 0.0096 2.1E-07 50.9 11.9 96 249-375 3-102 (120)
187 PRK15331 chaperone protein Sic 97.1 0.014 3E-07 52.2 12.9 83 217-307 49-136 (165)
188 KOG3785|consensus 97.1 0.1 2.3E-06 51.8 19.7 48 109-161 58-105 (557)
189 PF13428 TPR_14: Tetratricopep 97.0 0.0019 4.1E-08 44.6 5.3 43 110-155 1-43 (44)
190 PRK15331 chaperone protein Sic 96.9 0.035 7.5E-07 49.7 14.0 90 283-377 44-134 (165)
191 COG0457 NrfG FOG: TPR repeat [ 96.9 0.3 6.6E-06 44.3 25.3 141 236-380 118-268 (291)
192 COG0457 NrfG FOG: TPR repeat [ 96.9 0.31 6.6E-06 44.2 26.0 218 90-344 37-268 (291)
193 PF12688 TPR_5: Tetratrico pep 96.9 0.027 5.9E-07 48.1 12.8 84 184-275 16-103 (120)
194 COG4700 Uncharacterized protei 96.9 0.059 1.3E-06 49.0 15.1 69 236-304 147-225 (251)
195 PF13424 TPR_12: Tetratricopep 96.9 0.0039 8.5E-08 48.6 6.9 70 107-198 1-75 (78)
196 PF02259 FAT: FAT domain; Int 96.8 0.74 1.6E-05 46.7 25.7 116 243-358 142-305 (352)
197 KOG1585|consensus 96.8 0.26 5.6E-06 46.8 19.0 154 242-413 86-252 (308)
198 PF08311 Mad3_BUB1_I: Mad3/BUB 96.7 0.016 3.5E-07 50.0 10.2 110 187-339 3-126 (126)
199 PF06552 TOM20_plant: Plant sp 96.7 0.023 5E-07 51.4 11.3 28 234-261 56-83 (186)
200 PF13428 TPR_14: Tetratricopep 96.7 0.0044 9.6E-08 42.7 5.3 42 206-255 2-43 (44)
201 KOG0543|consensus 96.7 0.03 6.5E-07 56.7 13.2 111 252-381 213-324 (397)
202 COG1729 Uncharacterized protei 96.6 0.02 4.3E-07 55.3 10.9 94 86-203 151-249 (262)
203 smart00386 HAT HAT (Half-A-TPR 96.6 0.0038 8.2E-08 39.4 4.1 31 326-356 1-32 (33)
204 KOG3785|consensus 96.4 0.75 1.6E-05 46.0 20.4 176 184-382 37-219 (557)
205 COG4785 NlpI Lipoprotein NlpI, 96.4 0.69 1.5E-05 43.3 18.6 43 346-392 238-280 (297)
206 COG1729 Uncharacterized protei 96.3 0.075 1.6E-06 51.4 12.8 90 184-281 156-249 (262)
207 KOG3616|consensus 96.2 0.72 1.6E-05 50.1 20.4 38 313-350 996-1033(1636)
208 PF13512 TPR_18: Tetratricopep 96.2 0.23 5E-06 43.5 13.9 71 109-203 9-81 (142)
209 KOG1586|consensus 96.1 0.87 1.9E-05 43.1 18.2 176 183-384 28-231 (288)
210 PF13512 TPR_18: Tetratricopep 96.1 0.075 1.6E-06 46.5 10.6 107 86-203 20-133 (142)
211 COG4105 ComL DNA uptake lipopr 96.1 1.5 3.2E-05 42.3 20.7 73 109-203 33-105 (254)
212 COG4785 NlpI Lipoprotein NlpI, 96.1 1.3 2.8E-05 41.5 21.3 170 233-414 85-263 (297)
213 PF04184 ST7: ST7 protein; In 96.0 0.17 3.6E-06 52.8 14.4 148 232-382 187-380 (539)
214 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.03 6.5E-07 57.9 8.9 72 105-198 69-141 (453)
215 KOG2053|consensus 96.0 3.6 7.9E-05 46.0 26.0 201 86-320 53-265 (932)
216 PF06552 TOM20_plant: Plant sp 95.9 0.07 1.5E-06 48.4 9.7 96 92-203 7-114 (186)
217 smart00386 HAT HAT (Half-A-TPR 95.9 0.012 2.5E-07 37.1 3.6 31 184-216 2-32 (33)
218 PLN03098 LPA1 LOW PSII ACCUMUL 95.9 0.04 8.6E-07 57.1 9.2 68 199-276 71-141 (453)
219 KOG3616|consensus 95.8 1.4 3.1E-05 47.9 20.2 68 283-360 772-839 (1636)
220 KOG4555|consensus 95.8 0.11 2.3E-06 44.6 9.7 81 217-305 55-144 (175)
221 PF13424 TPR_12: Tetratricopep 95.8 0.063 1.4E-06 41.6 8.0 64 313-379 6-77 (78)
222 PF03704 BTAD: Bacterial trans 95.7 0.15 3.2E-06 45.0 11.1 111 257-379 16-127 (146)
223 PF02259 FAT: FAT domain; Int 95.7 0.72 1.6E-05 46.8 17.9 122 109-260 145-305 (352)
224 smart00777 Mad3_BUB1_I Mad3/BU 95.6 0.3 6.5E-06 41.9 12.1 111 233-374 5-125 (125)
225 PF07719 TPR_2: Tetratricopept 95.6 0.031 6.7E-07 35.6 4.7 34 247-280 1-34 (34)
226 KOG4340|consensus 95.5 1.6 3.4E-05 42.8 17.5 248 87-357 21-322 (459)
227 KOG3081|consensus 95.4 1.1 2.3E-05 43.3 16.2 89 183-281 187-276 (299)
228 PF04910 Tcf25: Transcriptiona 95.4 1.4 3E-05 45.4 18.5 141 238-380 31-225 (360)
229 KOG4340|consensus 95.3 1.7 3.7E-05 42.6 17.3 217 184-418 25-271 (459)
230 PF03704 BTAD: Bacterial trans 95.3 0.54 1.2E-05 41.3 13.5 61 207-275 64-124 (146)
231 KOG3081|consensus 95.3 0.72 1.6E-05 44.5 14.4 143 236-382 96-241 (299)
232 KOG4234|consensus 95.2 0.2 4.3E-06 46.2 10.1 91 181-279 107-200 (271)
233 KOG4555|consensus 95.2 0.47 1E-05 40.8 11.6 88 181-278 55-146 (175)
234 COG4105 ComL DNA uptake lipopr 95.1 3.3 7.2E-05 39.9 19.3 159 246-412 33-228 (254)
235 KOG1130|consensus 95.1 1.7 3.7E-05 44.4 17.2 89 286-377 245-344 (639)
236 smart00777 Mad3_BUB1_I Mad3/BU 95.1 0.32 6.9E-06 41.8 10.6 106 294-412 3-123 (125)
237 PF00515 TPR_1: Tetratricopept 95.0 0.06 1.3E-06 34.4 4.7 33 247-279 1-33 (34)
238 KOG0890|consensus 94.8 7.8 0.00017 48.0 24.2 256 110-403 1670-1984(2382)
239 PF07719 TPR_2: Tetratricopept 94.8 0.078 1.7E-06 33.7 4.8 33 110-142 1-33 (34)
240 COG3118 Thioredoxin domain-con 94.7 4.3 9.3E-05 39.9 18.2 124 115-276 139-265 (304)
241 KOG4234|consensus 94.3 0.86 1.9E-05 42.1 11.7 106 113-250 98-205 (271)
242 KOG2422|consensus 94.2 2 4.3E-05 45.8 15.7 139 240-379 277-450 (665)
243 PF13431 TPR_17: Tetratricopep 93.7 0.059 1.3E-06 34.8 2.4 31 99-131 3-34 (34)
244 KOG4648|consensus 93.7 0.48 1E-05 47.1 9.6 108 114-256 101-208 (536)
245 PF00515 TPR_1: Tetratricopept 93.3 0.19 4.2E-06 31.9 4.4 32 110-141 1-32 (34)
246 KOG4648|consensus 93.3 0.46 9.9E-06 47.3 8.7 99 86-213 107-207 (536)
247 KOG0985|consensus 92.9 21 0.00046 40.9 25.3 60 88-161 1087-1147(1666)
248 PF04184 ST7: ST7 protein; In 92.6 4.2 9.1E-05 42.8 14.9 177 88-281 180-380 (539)
249 PF13174 TPR_6: Tetratricopept 92.6 0.22 4.8E-06 31.2 3.8 33 248-280 1-33 (33)
250 KOG4642|consensus 92.5 0.51 1.1E-05 44.7 7.6 84 183-276 24-107 (284)
251 PF13176 TPR_7: Tetratricopept 92.4 0.28 6.1E-06 31.9 4.2 28 112-139 1-28 (36)
252 COG3118 Thioredoxin domain-con 92.3 4.5 9.8E-05 39.8 13.9 133 256-395 143-283 (304)
253 PF13181 TPR_8: Tetratricopept 92.1 0.27 6E-06 31.1 3.9 32 248-279 2-33 (34)
254 PF10300 DUF3808: Protein of u 92.1 12 0.00025 40.1 18.4 175 190-377 178-376 (468)
255 KOG2796|consensus 91.9 5.6 0.00012 38.5 13.8 44 236-279 275-318 (366)
256 KOG4642|consensus 91.9 2.2 4.8E-05 40.6 10.9 87 236-322 33-127 (284)
257 KOG1585|consensus 91.6 13 0.00029 35.7 18.3 203 111-375 32-254 (308)
258 KOG4507|consensus 90.9 11 0.00024 40.5 15.8 96 288-387 619-715 (886)
259 PF13181 TPR_8: Tetratricopept 90.6 0.75 1.6E-05 29.0 4.8 31 346-379 2-32 (34)
260 PF10300 DUF3808: Protein of u 90.4 26 0.00056 37.5 19.0 103 235-340 255-375 (468)
261 KOG4318|consensus 90.3 37 0.0008 38.5 25.8 112 66-202 660-812 (1088)
262 PF13176 TPR_7: Tetratricopept 90.1 0.61 1.3E-05 30.3 4.1 27 249-275 1-27 (36)
263 KOG2610|consensus 90.1 5.4 0.00012 39.9 12.1 157 89-275 116-275 (491)
264 PF12854 PPR_1: PPR repeat 89.7 0.64 1.4E-05 29.9 3.8 31 106-136 3-33 (34)
265 PF14561 TPR_20: Tetratricopep 89.4 2.9 6.2E-05 33.7 8.3 46 235-280 10-55 (90)
266 smart00028 TPR Tetratricopepti 89.0 0.69 1.5E-05 27.6 3.7 32 248-279 2-33 (34)
267 PF13281 DUF4071: Domain of un 88.8 31 0.00067 35.5 19.6 154 184-348 156-339 (374)
268 KOG3824|consensus 88.6 1.3 2.8E-05 43.5 6.7 44 236-279 139-182 (472)
269 PF13041 PPR_2: PPR repeat fam 88.5 1.9 4.2E-05 30.1 6.1 43 312-354 3-47 (50)
270 KOG1464|consensus 88.5 26 0.00056 34.2 16.5 123 236-358 128-285 (440)
271 PF04910 Tcf25: Transcriptiona 88.4 15 0.00032 37.8 14.8 36 105-140 34-70 (360)
272 KOG3824|consensus 88.3 2.2 4.7E-05 42.0 7.9 58 322-382 126-184 (472)
273 COG2976 Uncharacterized protei 88.2 15 0.00032 34.1 12.8 95 284-381 97-192 (207)
274 COG4976 Predicted methyltransf 88.2 0.63 1.4E-05 43.9 4.1 57 217-281 7-63 (287)
275 KOG0376|consensus 88.2 0.77 1.7E-05 47.8 5.2 114 183-306 18-131 (476)
276 KOG2610|consensus 87.9 15 0.00033 36.8 13.5 136 235-377 125-276 (491)
277 KOG2471|consensus 87.4 42 0.00091 35.5 18.5 67 184-258 298-380 (696)
278 PF04053 Coatomer_WDAD: Coatom 87.4 5.7 0.00012 42.0 11.3 81 53-139 287-376 (443)
279 PF10602 RPN7: 26S proteasome 86.9 16 0.00035 33.4 12.7 94 313-411 37-136 (177)
280 KOG1130|consensus 86.7 25 0.00053 36.4 14.5 94 248-341 236-344 (639)
281 PF04053 Coatomer_WDAD: Coatom 86.4 33 0.00072 36.3 16.3 140 183-337 275-427 (443)
282 KOG1308|consensus 85.2 1.1 2.5E-05 44.6 4.3 45 236-280 137-181 (377)
283 KOG0545|consensus 85.1 8.4 0.00018 36.9 9.8 93 179-279 188-296 (329)
284 PF13041 PPR_2: PPR repeat fam 84.9 4.1 8.9E-05 28.4 6.1 45 108-154 1-45 (50)
285 KOG2041|consensus 84.7 69 0.0015 35.4 19.5 37 100-138 684-720 (1189)
286 COG2976 Uncharacterized protei 84.4 35 0.00075 31.7 16.3 92 250-344 92-191 (207)
287 PF13174 TPR_6: Tetratricopept 84.1 2.2 4.7E-05 26.4 4.0 28 350-380 5-32 (33)
288 KOG1586|consensus 84.1 41 0.00088 32.2 17.2 82 261-343 128-226 (288)
289 KOG0890|consensus 83.3 1.4E+02 0.003 37.9 22.2 66 311-380 1669-1735(2382)
290 smart00028 TPR Tetratricopepti 82.8 2.1 4.7E-05 25.2 3.6 31 111-141 2-32 (34)
291 PF10602 RPN7: 26S proteasome 82.3 20 0.00044 32.8 11.1 95 282-379 42-144 (177)
292 PF12862 Apc5: Anaphase-promot 81.3 25 0.00054 28.3 10.2 57 324-383 10-76 (94)
293 KOG0545|consensus 80.1 59 0.0013 31.4 13.8 65 314-381 232-297 (329)
294 PF12854 PPR_1: PPR repeat 79.8 3.2 7E-05 26.5 3.6 28 311-338 6-33 (34)
295 KOG0985|consensus 79.8 1.3E+02 0.0028 35.1 21.8 59 206-277 1105-1163(1666)
296 KOG3807|consensus 78.9 71 0.0015 32.2 13.9 147 234-382 205-396 (556)
297 COG3629 DnrI DNA-binding trans 78.8 37 0.0008 33.5 12.2 60 315-377 156-216 (280)
298 KOG1308|consensus 78.5 1.7 3.7E-05 43.4 2.8 88 180-277 125-212 (377)
299 TIGR02996 rpt_mate_G_obs repea 77.5 5.8 0.00013 26.8 4.2 32 235-266 4-35 (42)
300 PF13281 DUF4071: Domain of un 77.0 95 0.0021 32.0 21.9 132 282-414 185-331 (374)
301 KOG1941|consensus 76.2 97 0.0021 31.7 21.5 133 248-383 123-281 (518)
302 PF11207 DUF2989: Protein of u 75.4 71 0.0015 29.8 16.8 75 288-367 118-197 (203)
303 PF08631 SPO22: Meiosis protei 74.8 90 0.0019 30.7 27.1 136 121-278 4-152 (278)
304 COG4976 Predicted methyltransf 74.5 4.1 9E-05 38.6 4.0 36 123-161 8-43 (287)
305 KOG2796|consensus 73.9 93 0.002 30.4 20.4 107 236-344 200-318 (366)
306 PF01535 PPR: PPR repeat; Int 73.7 5.1 0.00011 24.2 3.2 28 314-341 2-29 (31)
307 COG3629 DnrI DNA-binding trans 73.7 15 0.00033 36.1 8.0 60 208-275 156-215 (280)
308 KOG0551|consensus 73.3 53 0.0011 33.1 11.5 58 250-307 84-150 (390)
309 PRK10941 hypothetical protein; 72.4 26 0.00056 34.4 9.3 46 236-281 204-249 (269)
310 PF09986 DUF2225: Uncharacteri 71.7 77 0.0017 30.0 12.1 94 184-307 92-196 (214)
311 KOG0276|consensus 71.5 20 0.00044 38.7 8.6 85 49-139 602-695 (794)
312 KOG0276|consensus 71.3 57 0.0012 35.5 11.8 85 243-337 662-746 (794)
313 PF13374 TPR_10: Tetratricopep 70.8 10 0.00022 24.6 4.4 29 111-139 3-31 (42)
314 PF01535 PPR: PPR repeat; Int 67.9 8 0.00017 23.3 3.2 28 112-139 2-29 (31)
315 PRK10941 hypothetical protein; 66.8 21 0.00046 35.0 7.3 58 86-145 191-250 (269)
316 KOG0551|consensus 66.7 34 0.00073 34.4 8.6 89 180-276 92-182 (390)
317 PF15297 CKAP2_C: Cytoskeleton 66.5 10 0.00022 38.3 5.0 46 93-140 120-170 (353)
318 PF13374 TPR_10: Tetratricopep 66.2 14 0.00031 23.9 4.4 29 248-276 3-31 (42)
319 TIGR00756 PPR pentatricopeptid 64.1 13 0.00028 22.8 3.7 28 314-341 2-29 (35)
320 PF14853 Fis1_TPR_C: Fis1 C-te 64.0 20 0.00044 25.6 4.9 26 179-204 11-36 (53)
321 KOG1538|consensus 63.0 2.5E+02 0.0053 31.1 16.3 30 110-139 585-614 (1081)
322 KOG4507|consensus 61.9 42 0.00092 36.3 8.7 23 181-203 688-710 (886)
323 PF11846 DUF3366: Domain of un 61.8 24 0.00052 32.5 6.5 50 328-380 127-176 (193)
324 KOG1166|consensus 60.2 1.3E+02 0.0027 35.2 12.8 113 246-358 33-162 (974)
325 TIGR00756 PPR pentatricopeptid 60.2 18 0.00039 22.1 3.8 28 112-139 2-29 (35)
326 PRK15338 type III secretion sy 59.1 2.2E+02 0.0047 29.3 15.7 138 236-377 112-269 (372)
327 TIGR01987 HI0074 nucleotidyltr 58.5 90 0.0019 26.7 8.8 68 312-379 39-112 (123)
328 PF07721 TPR_4: Tetratricopept 58.2 15 0.00032 21.8 2.9 23 249-271 3-25 (26)
329 PF15297 CKAP2_C: Cytoskeleton 57.6 92 0.002 31.6 9.9 60 318-380 109-172 (353)
330 PF09986 DUF2225: Uncharacteri 57.3 49 0.0011 31.3 7.8 74 247-342 118-195 (214)
331 PF12862 Apc5: Anaphase-promot 56.3 1E+02 0.0022 24.6 8.9 56 121-198 9-70 (94)
332 KOG1941|consensus 56.1 2.5E+02 0.0053 28.9 19.7 133 248-380 163-323 (518)
333 PF11207 DUF2989: Protein of u 55.8 47 0.001 31.0 7.1 52 109-161 140-192 (203)
334 KOG2300|consensus 54.3 3E+02 0.0065 29.4 16.5 170 247-419 7-198 (629)
335 PF11846 DUF3366: Domain of un 53.9 27 0.00057 32.2 5.4 48 92-141 127-175 (193)
336 PF13812 PPR_3: Pentatricopept 53.8 28 0.0006 21.3 3.9 29 111-139 2-30 (34)
337 KOG2422|consensus 53.2 3.4E+02 0.0073 29.7 15.5 34 105-138 278-312 (665)
338 COG3947 Response regulator con 51.6 24 0.00052 34.8 4.6 52 86-139 289-342 (361)
339 KOG0376|consensus 49.4 30 0.00065 36.4 5.2 88 89-203 17-106 (476)
340 PF13812 PPR_3: Pentatricopept 48.5 39 0.00086 20.6 4.0 28 314-341 3-30 (34)
341 KOG1464|consensus 48.2 2.8E+02 0.0061 27.3 18.1 189 183-379 41-262 (440)
342 KOG1538|consensus 47.6 2.2E+02 0.0048 31.5 11.3 27 345-374 804-830 (1081)
343 TIGR03504 FimV_Cterm FimV C-te 47.6 40 0.00086 23.1 4.0 25 251-275 3-27 (44)
344 PF14561 TPR_20: Tetratricopep 46.4 1.5E+02 0.0033 23.6 9.1 39 268-306 9-52 (90)
345 PF10345 Cohesin_load: Cohesin 44.2 4.8E+02 0.01 28.8 17.7 170 247-419 59-256 (608)
346 KOG3871|consensus 40.2 33 0.00071 34.5 3.7 57 450-509 54-110 (449)
347 PF10516 SHNi-TPR: SHNi-TPR; 40.0 60 0.0013 21.5 3.8 29 111-139 2-30 (38)
348 smart00299 CLH Clathrin heavy 38.8 2.5E+02 0.0053 23.9 12.1 53 206-259 83-137 (140)
349 PF04781 DUF627: Protein of un 38.1 1.4E+02 0.0031 25.0 6.6 85 87-198 7-107 (111)
350 COG3947 Response regulator con 37.8 1.3E+02 0.0027 30.0 7.1 51 214-272 288-338 (361)
351 PF07720 TPR_3: Tetratricopept 37.1 1.1E+02 0.0024 19.9 4.7 31 248-278 2-34 (36)
352 TIGR03504 FimV_Cterm FimV C-te 36.2 1.3E+02 0.0028 20.6 5.1 16 324-339 11-26 (44)
353 cd02680 MIT_calpain7_2 MIT: do 36.2 53 0.0011 25.4 3.6 18 324-341 18-35 (75)
354 KOG1972|consensus 35.5 2.4E+02 0.0052 31.9 9.6 39 243-281 832-870 (913)
355 PF08780 NTase_sub_bind: Nucle 35.4 2.8E+02 0.0061 23.6 10.0 101 263-379 6-113 (124)
356 PF09797 NatB_MDM20: N-acetylt 34.9 2.1E+02 0.0046 29.3 9.0 46 291-338 198-243 (365)
357 COG4455 ImpE Protein of avirul 34.1 1.4E+02 0.003 28.5 6.5 72 86-159 11-84 (273)
358 PF09613 HrpB1_HrpK: Bacterial 34.0 3.5E+02 0.0076 24.3 13.2 102 217-342 22-123 (160)
359 COG2912 Uncharacterized conser 33.1 2E+02 0.0044 28.2 7.8 48 236-283 204-251 (269)
360 KOG2471|consensus 31.9 6.8E+02 0.015 27.0 20.4 97 60-159 242-381 (696)
361 KOG0889|consensus 31.6 1.5E+03 0.032 30.9 25.3 317 50-415 2464-2921(3550)
362 KOG1310|consensus 31.3 2.1E+02 0.0046 30.9 8.0 90 184-280 389-478 (758)
363 PF12921 ATP13: Mitochondrial 31.1 2.2E+02 0.0048 24.3 7.1 55 105-160 47-101 (126)
364 KOG2114|consensus 30.3 4.3E+02 0.0094 30.2 10.5 90 312-414 368-457 (933)
365 KOG3807|consensus 30.0 6.1E+02 0.013 25.8 12.6 109 257-380 194-307 (556)
366 COG2909 MalT ATP-dependent tra 29.0 9.5E+02 0.021 27.8 23.5 241 69-337 372-684 (894)
367 cd02680 MIT_calpain7_2 MIT: do 29.0 2.6E+02 0.0057 21.6 6.4 53 328-397 3-55 (75)
368 COG2912 Uncharacterized conser 28.6 92 0.002 30.5 4.7 57 86-144 191-249 (269)
369 PF14853 Fis1_TPR_C: Fis1 C-te 26.8 1.7E+02 0.0037 20.9 4.6 22 258-279 12-33 (53)
370 KOG1972|consensus 26.3 7.1E+02 0.015 28.5 11.2 34 344-380 835-868 (913)
371 KOG1166|consensus 26.1 2.3E+02 0.0049 33.3 7.9 104 292-404 55-165 (974)
372 cd02684 MIT_2 MIT: domain cont 26.0 2.7E+02 0.0058 21.4 6.0 16 326-341 20-35 (75)
373 smart00299 CLH Clathrin heavy 25.6 4.1E+02 0.009 22.5 14.8 106 236-356 30-136 (140)
374 KOG2041|consensus 25.0 1E+03 0.022 26.9 21.3 37 236-272 841-877 (1189)
375 KOG1811|consensus 24.6 1.8E+02 0.0038 31.8 6.1 46 110-157 587-632 (1141)
376 PF07079 DUF1347: Protein of u 24.5 5.2E+02 0.011 27.5 9.3 55 287-341 90-157 (549)
377 PF04781 DUF627: Protein of un 23.6 4.4E+02 0.0096 22.1 8.8 24 180-203 7-30 (111)
378 PF08631 SPO22: Meiosis protei 23.2 7E+02 0.015 24.3 25.7 155 88-274 5-184 (278)
379 KOG0687|consensus 22.5 2.8E+02 0.006 28.1 6.7 97 248-347 105-216 (393)
380 PF10373 EST1_DNA_bind: Est1 D 22.0 1.8E+02 0.004 27.9 5.7 43 234-276 3-45 (278)
381 PF10373 EST1_DNA_bind: Est1 D 21.0 3.7E+02 0.0079 25.8 7.6 61 188-259 1-62 (278)
382 TIGR02561 HrpB1_HrpK type III 20.3 6.2E+02 0.013 22.5 10.2 100 218-341 23-122 (153)
No 1
>KOG1915|consensus
Probab=100.00 E-value=1.1e-96 Score=723.05 Aligned_cols=443 Identities=55% Similarity=0.878 Sum_probs=419.9
Q ss_pred CCCCCCCcccCCHHHHHHHHHhccccCCCCCCC---CHHHHHhhccCcCcc-----------------------------
Q psy8681 1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE---GWEEVFDYIFPEDEA----------------------------- 48 (521)
Q Consensus 1 ~~~~~~~~~qit~~q~l~ea~~~~~~~~~~~~~---d~eel~~~~~~~~~~----------------------------- 48 (521)
||||+|||+|||||||||||++|+....+||.+ |++||.+||+|||+.
T Consensus 11 vknktpa~vqItAEQlLRea~er~~~~~~ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~ 90 (677)
T KOG1915|consen 11 VKNKTPAPVQITAEQLLREARERQLAAPRPPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQ 90 (677)
T ss_pred ccCCCCCcceecHHHHHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 899999999999999999999999855544444 999999999999643
Q ss_pred ---------------------------------------CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----
Q psy8681 49 ---------------------------------------AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK----- 81 (521)
Q Consensus 49 ---------------------------------------~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife----- 81 (521)
+.|||++|||| ++||| +||+++||+.+||+||+
T Consensus 91 RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w 170 (677)
T KOG1915|consen 91 RARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW 170 (677)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC
Confidence 44888999999 99999 99999999999999999
Q ss_pred CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHH
Q psy8681 82 ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFI 151 (521)
Q Consensus 82 ~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~ 151 (521)
.|+. |+|+++++.||.+ +|+| .+||.+..|+.|+.|++++|++..||.||++|++.++++.....+++
T Consensus 171 ~P~eqaW~sfI~fElRykeieraR~IYerfV--~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfv 248 (677)
T KOG1915|consen 171 EPDEQAWLSFIKFELRYKEIERARSIYERFV--LVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFV 248 (677)
T ss_pred CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHh--eecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 6876 9999999999999 9999 99999999999999999999999999999999999998777789999
Q ss_pred HHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 152 AFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 152 ~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
+||.|+.+++ ++++||.||+.||+++|.+.+..||..|+.||+++|+..+++++|+.|
T Consensus 249 aFA~fEe~qk----------------------E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~K 306 (677)
T KOG1915|consen 249 AFAEFEERQK----------------------EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGK 306 (677)
T ss_pred HHHHHHHHHH----------------------HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhh
Confidence 9999999999 999999999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------------------------
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------------------------ 281 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------------------------ 281 (521)
|+.+|+..+..||.|+++|++|+++....|+.++++++|++||.++|+..
T Consensus 307 Rk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 307 RKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999855
Q ss_pred --------------------------------------------------------------------------------
Q psy8681 282 -------------------------------------------------------------------------------- 281 (521)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (521)
T Consensus 387 ~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~ 466 (677)
T KOG1915|consen 387 QVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF 466 (677)
T ss_pred HHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence
Q ss_pred ----------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHH
Q psy8681 282 ----------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351 (521)
Q Consensus 282 ----------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~y 351 (521)
||.||..+|+.++||+||+.|+++|..+|+..+|.+||+|++..|++++||.||+++|..++|++||+++
T Consensus 467 ~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisF 546 (677)
T KOG1915|consen 467 SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISF 546 (677)
T ss_pred ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhH
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHc--CCch-----------hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 352 AQFEMSS--GDED-----------SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 352 a~~e~~~--g~~~-----------~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
|.|+.+. |+++ ++..||.+|++|...+.+.+++++|++|+++|.+||..+|+..+++.|.++||++|
T Consensus 547 A~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mPk~v 626 (677)
T KOG1915|consen 547 AKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMPKKV 626 (677)
T ss_pred HHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhccHHH
Confidence 9999954 2222 68999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccccCCCCCCeeEEEEeecCCcccCCCcHHHHHHHHHHHHHhHhh
Q psy8681 419 KKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEK 468 (521)
Q Consensus 419 ~krr~~~~~~~~~~~~~e~~d~if~e~~~~~~~~~~~~~a~~w~~~~~~~ 468 (521)
||||++..+|| +.+|+||+|||||||..+++|+|||++|++||+++..+
T Consensus 627 KKrr~~~~edG-~~~~EEy~DYiFPed~~~~~~~K~LeaA~kWK~q~~~~ 675 (677)
T KOG1915|consen 627 KKRRKIQREDG-DTEYEEYFDYIFPEDASATKNLKILEAAKKWKKQKAKA 675 (677)
T ss_pred HhhhhhhcccC-chhHHHHHHhcCccccccCcchHHHHHHHHHHHHHHhc
Confidence 99999888888 66899999999999998899999999999999988754
No 2
>KOG0495|consensus
Probab=100.00 E-value=3.8e-32 Score=276.87 Aligned_cols=354 Identities=20% Similarity=0.247 Sum_probs=273.7
Q ss_pred CCchhhhhhH-HHHHH--HHHHhcCChh-hhhhhcC-CCcH------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHH
Q psy8681 50 KPNLKLLEKA-KAWKK--AMEEKQGNKI-GEEGANK-ENEE------EERDKERDREEED-ERKDEGDRDS-DTTYGMRE 116 (521)
Q Consensus 50 ~rai~~lP~~-~~W~~--~~e~~~gn~~-~Ar~ife-~P~~------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~ 116 (521)
..||..+|.+ .+|++ .+|....+-. ..|+.++ .|++ .+.+.+.+.||.+ .|+| .+.| |.++|+.|
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAv--eccp~s~dLwlAl 416 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAV--ECCPQSMDLWLAL 416 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHH--HhccchHHHHHHH
Confidence 3677799999 99999 7776333322 2345555 6887 6677888889999 9999 9999 89999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh--------------------------
Q psy8681 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI-------------------------- 170 (521)
Q Consensus 117 a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~-------------------------- 170 (521)
++++ .|+.|++|+.+|-+.+|. ++.+|+.-+.+++.+|. .....++
T Consensus 417 arLe----tYenAkkvLNkaRe~ipt---d~~IWitaa~LEE~ngn-~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~ 488 (913)
T KOG0495|consen 417 ARLE----TYENAKKVLNKAREIIPT---DREIWITAAKLEEANGN-VDMVEKIIDRGLSELQANGVEINRDQWLKEAEA 488 (913)
T ss_pred HHHH----HHHHHHHHHHHHHhhCCC---ChhHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHH
Confidence 9999 899999999999999874 68899999999999882 1111000
Q ss_pred ---------------------------hHHHHHh--hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh
Q psy8681 171 ---------------------------EDVIVSK--RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221 (521)
Q Consensus 171 ---------------------------~~~~l~~--~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~ 221 (521)
..+|+.+ .+...+.++.||.+|..+|+.+|... .+|...+.|++.||..
T Consensus 489 ~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~--slWlra~~~ek~hgt~ 566 (913)
T KOG0495|consen 489 CEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKK--SLWLRAAMFEKSHGTR 566 (913)
T ss_pred HhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchh--HHHHHHHHHHHhcCcH
Confidence 1122221 12333678999999999999999988 8999999999999999
Q ss_pred hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------------------
Q psy8681 222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------------------- 281 (521)
Q Consensus 222 ~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------------------- 281 (521)
++...+ +++++..+|....+|++|+...+..|++..||.++.+|+..+|++.
T Consensus 567 Esl~Al--------lqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 567 ESLEAL--------LQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HHHHHH--------HHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHH
Confidence 999877 9999999999999999999999999999999999999999999876
Q ss_pred ------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 282 ------------------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 282 ------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++.||.-+|+.++|+.+++.+++..|. ...+|...++++.+.++++.||..|..+++.||
T Consensus 639 ~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~--f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 639 DLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD--FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc--hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCC
Confidence 455555666666666666666664332 245666666666666666666666666666666
Q ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhh
Q psy8681 344 -HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRV 422 (521)
Q Consensus 344 -~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr 422 (521)
++.+|+.++.++...|+ +.+||.+|++|....|++. .+|.+-+.+|.++|+.+.++.+..+. ++.
T Consensus 717 ~~ipLWllLakleEk~~~---~~rAR~ildrarlkNPk~~------~lwle~Ir~ElR~gn~~~a~~lmakA---LQe-- 782 (913)
T KOG0495|consen 717 NSIPLWLLLAKLEEKDGQ---LVRARSILDRARLKNPKNA------LLWLESIRMELRAGNKEQAELLMAKA---LQE-- 782 (913)
T ss_pred CCchHHHHHHHHHHHhcc---hhhHHHHHHHHHhcCCCcc------hhHHHHHHHHHHcCCHHHHHHHHHHH---HHh--
Confidence 46677777777777666 8899999999988888874 69999999999999999888876554 654
Q ss_pred cccccCCCCCCeeEEEEeecCCcc
Q psy8681 423 KTYNDEGVEEGWEEVFDYIFPEDE 446 (521)
Q Consensus 423 ~~~~~~~~~~~~~e~~d~if~e~~ 446 (521)
||.+| ..|.+-||++..
T Consensus 783 --cp~sg-----~LWaEaI~le~~ 799 (913)
T KOG0495|consen 783 --CPSSG-----LLWAEAIWLEPR 799 (913)
T ss_pred --CCccc-----hhHHHHHHhccC
Confidence 88888 555667888864
No 3
>KOG1915|consensus
Probab=100.00 E-value=7.7e-32 Score=266.10 Aligned_cols=355 Identities=25% Similarity=0.370 Sum_probs=281.7
Q ss_pred hhhH-HHHHH--HHHHhcCChhhhhhhcC---CCcH------------HHhcccchhhHHH-HhhhccCCCCC-hhhHHH
Q psy8681 56 LEKA-KAWKK--AMEEKQGNKIGEEGANK---ENEE------------EERDKERDREEED-ERKDEGDRDSD-TTYGMR 115 (521)
Q Consensus 56 lP~~-~~W~~--~~e~~~gn~~~Ar~ife---~P~~------------e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~ 115 (521)
.-.+ +.|.+ ++|++++++..||+||+ .-+. |++...+..||.+ +|+| ...|. ..+|.+
T Consensus 69 nR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAv--t~lPRVdqlWyK 146 (677)
T KOG1915|consen 69 NRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAV--TILPRVDQLWYK 146 (677)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHH--HhcchHHHHHHH
Confidence 3345 88999 99999999999999999 1111 8889999999999 9999 99995 579999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHH
Q psy8681 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 116 ~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~a 195 (521)
|.-+++..||+..||++|++-+..-| +...|.+|++|+.+.+ ++++||.||++-
T Consensus 147 Y~ymEE~LgNi~gaRqiferW~~w~P----~eqaW~sfI~fElRyk----------------------eieraR~IYerf 200 (677)
T KOG1915|consen 147 YIYMEEMLGNIAGARQIFERWMEWEP----DEQAWLSFIKFELRYK----------------------EIERARSIYERF 200 (677)
T ss_pred HHHHHHHhcccHHHHHHHHHHHcCCC----cHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHH
Confidence 99999999999999999999999865 5789999999999998 999999999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---YDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 196 L~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
+-..|.- ..|..|+.||.++|+...+..+ |++|+....++ ..+...++.+...+..+++|+-+|.-
T Consensus 201 V~~HP~v---~~wikyarFE~k~g~~~~aR~V--------yerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iyky 269 (677)
T KOG1915|consen 201 VLVHPKV---SNWIKYARFEEKHGNVALARSV--------YERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKY 269 (677)
T ss_pred heecccH---HHHHHHHHHHHhcCcHHHHHHH--------HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8887764 6899999999999998888766 77777665443 34555666666666777777777777
Q ss_pred HHHcCCchh-------------------------------------------------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 273 AIANIPPTK-------------------------------------------------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 273 Al~~~P~~~-------------------------------------------------~a~le~~~g~~e~Ar~ife~al 303 (521)
||...|.+. |..|+...|+.++.+.+|++||
T Consensus 270 Ald~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAI 349 (677)
T KOG1915|consen 270 ALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAI 349 (677)
T ss_pred HHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777777652 7889999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHH--------HHhcCChHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCchhhHHHHHH
Q psy8681 304 SQPRLDMPELVWKAYIDF--------EVGQGERDKVRELHERLLERTVH-----VKVWMNYAQFEMSSGDEDSVSLARRV 370 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~--------e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~ya~~e~~~g~~~~~~~AR~v 370 (521)
...|.......|..||-+ +....+.+.+|++|+.+|.+-|| .++|+.||+|+..+.+ +..||.+
T Consensus 350 anvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~---l~~ARki 426 (677)
T KOG1915|consen 350 ANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLN---LTGARKI 426 (677)
T ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcc---cHHHHHH
Confidence 954433234555555543 45578899999999999998765 8899999999998866 6666666
Q ss_pred HHHHHHHhccchh---------------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhhc
Q psy8681 371 FERANQALKASSE---------------------------KEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVK 423 (521)
Q Consensus 371 ferAl~~~~~~~~---------------------------~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~ 423 (521)
+-.|+-.||.... .-+.+..|..|.+||...|+.+.++.+.... |..-+
T Consensus 427 LG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelA---i~qp~- 502 (677)
T KOG1915|consen 427 LGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELA---ISQPA- 502 (677)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHH---hcCcc-
Confidence 6666666665422 0123678999999999999999999998777 55433
Q ss_pred ccccCCCCCCeeEEEEeecCCcccCCCc-H--HHHHHHH
Q psy8681 424 TYNDEGVEEGWEEVFDYIFPEDEAAKPN-L--KLLEKAK 459 (521)
Q Consensus 424 ~~~~~~~~~~~~e~~d~if~e~~~~~~~-~--~~~~~a~ 459 (521)
.|-++..|..|+|+.+-+++..... + .||+..+
T Consensus 503 ---ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 503 ---LDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred ---cccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 2455678999999999998765443 3 7777654
No 4
>KOG0495|consensus
Probab=99.96 E-value=7.2e-28 Score=245.78 Aligned_cols=304 Identities=21% Similarity=0.282 Sum_probs=263.5
Q ss_pred ccCCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHH
Q psy8681 47 EAAKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQ 122 (521)
Q Consensus 47 ~~~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~ 122 (521)
.++..+++.+|.. .+|.. +++.+.|..+....+| ++++ ...| ...+|++|++-...
T Consensus 537 AVya~alqvfp~k~slWlra~~~ek~hgt~Esl~All------------------qkav--~~~pkae~lwlM~ake~w~ 596 (913)
T KOG0495|consen 537 AVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALL------------------QKAV--EQCPKAEILWLMYAKEKWK 596 (913)
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHH------------------HHHH--HhCCcchhHHHHHHHHHHh
Confidence 4466677788888 88888 7777666666555555 5999 8889 78899999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.|++..||.++.+|++..| .+..+|++..+++.... ++++||.+|.+|-..-|+.
T Consensus 597 agdv~~ar~il~~af~~~p---nseeiwlaavKle~en~----------------------e~eraR~llakar~~sgTe 651 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANP---NSEEIWLAAVKLEFEND----------------------ELERARDLLAKARSISGTE 651 (913)
T ss_pred cCCcHHHHHHHHHHHHhCC---CcHHHHHHHHHHhhccc----------------------cHHHHHHHHHHHhccCCcc
Confidence 9999999999999999965 47899999999998887 9999999999998877765
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~- 281 (521)
.+|..++.|+.-.|+.+.+..+ ++++|+..|....+|+++++++.+.++++.||..|...++.+|.+.
T Consensus 652 ---Rv~mKs~~~er~ld~~eeA~rl--------lEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 652 ---RVWMKSANLERYLDNVEEALRL--------LEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred ---hhhHHHhHHHHHhhhHHHHHHH--------HHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 6999999999999999988876 8999999999999999999999999999999999999999999886
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
++.||+..|.+-+||.+++++.-.+|.+ ..+|...|.+|.+.|+.+.|..+..++|+.|| +..+|..-+.++.
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~--~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKN--ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc--chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 6889999999999999999998766543 57999999999999999999999999999997 5778887666654
Q ss_pred HcCC---------------------------chhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 357 SSGD---------------------------EDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAK 409 (521)
Q Consensus 357 ~~g~---------------------------~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~ 409 (521)
..+. +.++++||++|+||+...|++++ .|-.|..||.+||+.++.+.
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD------~wa~fykfel~hG~eed~ke 872 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD------AWAWFYKFELRHGTEEDQKE 872 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch------HHHHHHHHHHHhCCHHHHHH
Confidence 3211 25699999999999999999986 89999999999999999999
Q ss_pred HHhhC
Q psy8681 410 LNSKL 414 (521)
Q Consensus 410 v~~~~ 414 (521)
|..++
T Consensus 873 v~~~c 877 (913)
T KOG0495|consen 873 VLKKC 877 (913)
T ss_pred HHHHH
Confidence 98777
No 5
>KOG2047|consensus
Probab=99.93 E-value=3.6e-24 Score=218.67 Aligned_cols=272 Identities=24% Similarity=0.362 Sum_probs=232.8
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC----CC--c--H-----------HHhcccchhhHHH-Hhhhcc-------------
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK----EN--E--E-----------EERDKERDREEED-ERKDEG------------- 104 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife----~P--~--~-----------e~r~g~~e~Ar~~-eral~~------------- 104 (521)
.+|.. .+|+..|+++.||.+|+ -| . + |++..+++.|+.+ ++++.-
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 89999 99999999999999999 12 1 1 8899999999999 998620
Q ss_pred ----CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh---------------hhcc
Q psy8681 105 ----DRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR---------------EKYG 165 (521)
Q Consensus 105 ----~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~---------------~~~~ 165 (521)
.+|.|..+|..|+++++..|.++..+.||++.+++. ...|.+..+||.|.+.+. ++++
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr---iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR---IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 223457899999999999999999999999999983 457899999999877655 2566
Q ss_pred ccchhhHHHHHhh--hhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 166 DRAGIEDVIVSKR--KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 166 ~~~~~~~~~l~~~--~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.+..+|.+||.++ .+++..+++||.+|++||+.+|+..+..+|..|+.||..+|-...+..+ |+++...-
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsi--------yerat~~v 616 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSI--------YERATSAV 616 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHhcC
Confidence 7778999999986 4677899999999999999999988889999999999999987777766 99998775
Q ss_pred C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 244 P--NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 244 P--~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
+ .-.++|..|+.-....-.+...|.+|++||+..|++. |+.||.++|.+++||.||.-+.+.++......+
T Consensus 617 ~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~f 696 (835)
T KOG2047|consen 617 KEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEF 696 (835)
T ss_pred CHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHH
Confidence 4 3578999999988888789999999999999999987 899999999999999999999885544456899
Q ss_pred HHHHHHHHHhcCChHHHHHHHH--HHHhcC
Q psy8681 315 WKAYIDFEVGQGERDKVRELHE--RLLERT 342 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~e--ral~~~ 342 (521)
|.+|-.||.++|+-+..++++. |.++.+
T Consensus 697 W~twk~FEvrHGnedT~keMLRikRsvqa~ 726 (835)
T KOG2047|consen 697 WDTWKEFEVRHGNEDTYKEMLRIKRSVQAT 726 (835)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999777777653 555443
No 6
>KOG2047|consensus
Probab=99.93 E-value=2.3e-23 Score=212.90 Aligned_cols=316 Identities=21% Similarity=0.318 Sum_probs=246.9
Q ss_pred hhhhhH-HHHHHHHHHhcCChhhhhhhcC------CCc-------H--------HHhcccchhhHHH-HhhhccCCC-CC
Q psy8681 54 KLLEKA-KAWKKAMEEKQGNKIGEEGANK------ENE-------E--------EERDKERDREEED-ERKDEGDRD-SD 109 (521)
Q Consensus 54 ~~lP~~-~~W~~~~e~~~gn~~~Ar~ife------~P~-------~--------e~r~g~~e~Ar~~-eral~~~~~-P~ 109 (521)
...|.. .-|.+.+--..||......+|. +|. . +-+.|.++.||.+ ++++ .+. |.
T Consensus 343 RQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~--~V~y~~ 420 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT--KVPYKT 420 (835)
T ss_pred hcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh--cCCccc
Confidence 356766 7787722223356666666665 232 1 6677788888888 8877 442 32
Q ss_pred ----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc----------------cccHHHHHHHHHHHHhhhhhccccch
Q psy8681 110 ----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE----------------NLDEKLFIAFAKFEEGQREKYGDRAG 169 (521)
Q Consensus 110 ----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~----------------~~~~~lw~~~a~~e~~~~~~~~~~~~ 169 (521)
..+|..||.++.++.+++.|.++.++|+.. |.. +.+..+|..|+.+++..|
T Consensus 421 v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g-------- 491 (835)
T KOG2047|consen 421 VEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG-------- 491 (835)
T ss_pred hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc--------
Confidence 467888888888888888888888887653 211 123567777788887777
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--CCCH
Q psy8681 170 IEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--PNNY 247 (521)
Q Consensus 170 ~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--P~~~ 247 (521)
-++..+.+|++.++.--... .+-..|+.|...+.-++.+..+ |++.|.++ |.-+
T Consensus 492 --------------tfestk~vYdriidLriaTP--qii~NyAmfLEeh~yfeesFk~--------YErgI~LFk~p~v~ 547 (835)
T KOG2047|consen 492 --------------TFESTKAVYDRIIDLRIATP--QIIINYAMFLEEHKYFEESFKA--------YERGISLFKWPNVY 547 (835)
T ss_pred --------------cHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHhhHHHHHHHHH--------HHcCCccCCCccHH
Confidence 89999999999998732222 6788899998888888888877 99999985 5789
Q ss_pred HHHHHHHHHHHH-cC--CHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 248 DAWFDYLRLLED-EG--NADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 248 ~~W~~y~~~~~~-~g--~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
++|..|+.-..+ .| .+++||.+|++|+..||+.. |+.||+..|-..+|.+||++|...-+......+|+.
T Consensus 548 diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni 627 (835)
T KOG2047|consen 548 DIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNI 627 (835)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999877654 23 79999999999999999765 899999999999999999999885433334578999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTVH---VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAW 394 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~~---~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~ 394 (521)
||.--...-.....|.+|++|++.-|+ ....+.++.++.+.|. +++||.||--+-+.++.... ..+|..|
T Consensus 628 ~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGE---idRARaIya~~sq~~dPr~~----~~fW~tw 700 (835)
T KOG2047|consen 628 YIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGE---IDRARAIYAHGSQICDPRVT----TEFWDTW 700 (835)
T ss_pred HHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhh---HHHHHHHHHhhhhcCCCcCC----hHHHHHH
Confidence 998766677789999999999998764 4567889999999999 99999999999999876543 5799999
Q ss_pred HHHHHHcCCHHHHHHHH
Q psy8681 395 KEFEAQHGDDESRAKLN 411 (521)
Q Consensus 395 ~~fE~~~G~~~~~~~v~ 411 (521)
..||-+|||.++++.++
T Consensus 701 k~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 701 KEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHhcCCHHHHHHHH
Confidence 99999999999998886
No 7
>KOG4626|consensus
Probab=99.87 E-value=5.6e-20 Score=187.45 Aligned_cols=312 Identities=15% Similarity=0.093 Sum_probs=262.2
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC-h
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD-T 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~-~ 110 (521)
.+|.+-|.. ..|.. ......|+.+.|-++|- +|+. ....|++++|..- .++| ...|. .
T Consensus 141 ~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi--~~qp~fA 218 (966)
T KOG4626|consen 141 AAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAI--ETQPCFA 218 (966)
T ss_pred HHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHH--hhCCcee
Confidence 455677777 77776 55667777777777776 5644 4457889999999 9999 99994 7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHH-------------Hh
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV-------------SK 177 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l-------------~~ 177 (521)
..|..++-.....|++-.|+..|++|+.+.| ...+.|+++++.....+ .|+++...+..-+ +-
T Consensus 219 iawsnLg~~f~~~Gei~~aiq~y~eAvkldP---~f~dAYiNLGnV~ke~~-~~d~Avs~Y~rAl~lrpn~A~a~gNla~ 294 (966)
T KOG4626|consen 219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP---NFLDAYINLGNVYKEAR-IFDRAVSCYLRALNLRPNHAVAHGNLAC 294 (966)
T ss_pred eeehhcchHHhhcchHHHHHHHHHHhhcCCC---cchHHHhhHHHHHHHHh-cchHHHHHHHHHHhcCCcchhhccceEE
Confidence 8899999999999999999999999999844 46778888888776655 3333332221111 11
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
.++++|.++-|+..|++||+..|.-. ..|..++...+..|+...+.+. |.++|..+|+++++-.+++..+
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~F~--~Ay~NlanALkd~G~V~ea~~c--------YnkaL~l~p~hadam~NLgni~ 364 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPNFP--DAYNNLANALKDKGSVTEAVDC--------YNKALRLCPNHADAMNNLGNIY 364 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCCch--HHHhHHHHHHHhccchHHHHHH--------HHHHHHhCCccHHHHHHHHHHH
Confidence 24677999999999999999999876 7899999999999999999988 9999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
...|.++.|..+|..|+...|... ++.++.+.|+++.|...|..|+...|. ....+...++.+...|+.+.|.
T Consensus 365 ~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~--fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 365 REQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT--FADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch--HHHHHHhcchHHHHhhhHHHHH
Confidence 999999999999999999998754 788899999999999999999997663 3567778888899999999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 333 ELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 333 ~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+.|.+++..+| ..+.+.+++......|+ +..|..-|+.|+..-|+.++
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGn---i~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGN---IPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCC---cHHHHHHHHHHHccCCCCch
Confidence 99999999998 68899999999998888 99999999999999988765
No 8
>KOG1914|consensus
Probab=99.87 E-value=5.7e-19 Score=178.12 Aligned_cols=331 Identities=18% Similarity=0.209 Sum_probs=213.0
Q ss_pred hhhhhhH-HHHHH-HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHHcCChhHH
Q psy8681 53 LKLLEKA-KAWKK-AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGFVSGA 129 (521)
Q Consensus 53 i~~lP~~-~~W~~-~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~~g~~~~A 129 (521)
|+..|.. ..|+. --|....-++.+|..|+ +++ ..+| ++..|..|+..+....+++.+
T Consensus 13 ie~nP~di~sw~~lire~qt~~~~~~R~~YE------------------q~~--~~FP~s~r~W~~yi~~El~skdfe~V 72 (656)
T KOG1914|consen 13 IEENPYDIDSWSQLIREAQTQPIDKVRETYE------------------QLV--NVFPSSPRAWKLYIERELASKDFESV 72 (656)
T ss_pred HhcCCccHHHHHHHHHHHccCCHHHHHHHHH------------------HHh--ccCCCCcHHHHHHHHHHHHhhhHHHH
Confidence 5567777 77777 22222335555665555 555 5555 455555555555555555555
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh------------------hc---cccchhhHHHHHh-----h---hh
Q psy8681 130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------------------KY---GDRAGIEDVIVSK-----R---KF 180 (521)
Q Consensus 130 r~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~------------------~~---~~~~~~~~~~l~~-----~---~~ 180 (521)
.++|.+||... .+.++|..|..+-...+. +- ..+.++|+.|+.= . +.
T Consensus 73 EkLF~RCLvkv----LnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~e 148 (656)
T KOG1914|consen 73 EKLFSRCLVKV----LNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYE 148 (656)
T ss_pred HHHHHHHHHHH----hhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHH
Confidence 55555555431 234455554444332220 00 0112344444320 0 12
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH--------------------------------
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI-------------------------------- 228 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i-------------------------------- 228 (521)
+...++..|.+|++||.. |......+|..|..||...+.. .+.+.|
T Consensus 149 e~QRI~~vRriYqral~t-Pm~nlEkLW~DY~~fE~~IN~~-tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp 226 (656)
T KOG1914|consen 149 ENQRITAVRRIYQRALVT-PMHNLEKLWKDYEAFEQEINII-TARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVP 226 (656)
T ss_pred HHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHHHHHHH-HHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCC
Confidence 223788889999999864 6665668888888888755321 111111
Q ss_pred ---------------------------------HhhH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC------------
Q psy8681 229 ---------------------------------VSKR-KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN------------ 262 (521)
Q Consensus 229 ---------------------------------~~kr-r~~ye~al~~~P~~~~~W~~y~~~~~~~g~------------ 262 (521)
+.+| ...|+++|...+.++++|+.|..++...++
T Consensus 227 ~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~ 306 (656)
T KOG1914|consen 227 PKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAK 306 (656)
T ss_pred CCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccch
Confidence 0112 357999999999999999999999988776
Q ss_pred --HHHHHHHHHHHHHcCCchh--------------------------------------------HHHHHHHcCCHHHHH
Q psy8681 263 --ADLIRETYERAIANIPPTK--------------------------------------------FAELESLLGDMERAR 296 (521)
Q Consensus 263 --~~~Ar~~~erAl~~~P~~~--------------------------------------------~a~le~~~g~~e~Ar 296 (521)
-+++..+|++++...-... |.++-.+...+..||
T Consensus 307 ~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR 386 (656)
T KOG1914|consen 307 SLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAAR 386 (656)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHH
Confidence 7899999999988543221 334444556677788
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV-KVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~-~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.+|.+|-+.....-+.-+..+++.++ ..++..-|-.+|+-+|+.+++. ..-..|+.|++..++ -.+||.+|+|++
T Consensus 387 ~iF~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNd---d~N~R~LFEr~l 462 (656)
T KOG1914|consen 387 KIFKKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLND---DNNARALFERVL 462 (656)
T ss_pred HHHHHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCc---chhHHHHHHHHH
Confidence 88888777543222334555555554 3577888888888888888754 444669999999988 789999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCch
Q psy8681 376 QALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPR 416 (521)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 416 (521)
.. ..++ .....+|..|++||..+||+..+.+|.+++-.
T Consensus 463 ~s-~l~~--~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 463 TS-VLSA--DKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred hc-cCCh--hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 88 2222 34578999999999999999999999866643
No 9
>KOG1070|consensus
Probab=99.83 E-value=1.1e-18 Score=191.16 Aligned_cols=252 Identities=23% Similarity=0.380 Sum_probs=203.1
Q ss_pred chhhHHHHhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC--CccccHHHHHHHHHHHHhhhhhccccc
Q psy8681 92 RDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFG--EENLDEKLFIAFAKFEEGQREKYGDRA 168 (521)
Q Consensus 92 ~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~--~~~~~~~lw~~~a~~e~~~~~~~~~~~ 168 (521)
.+.|-.++|.| ..+| +.-+|+.|+.|..+.++++.||+++++||..+. +...--.+|++|.+++...|
T Consensus 1441 pesaeDferlv--rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG------- 1511 (1710)
T KOG1070|consen 1441 PESAEDFERLV--RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYG------- 1511 (1710)
T ss_pred CcCHHHHHHHH--hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhC-------
Confidence 34555558888 8999 688999999999999999999999999999852 12233689999999998877
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
.-+....+|++|.+.+..- .+|..+..++.+.+..+.|..+ |+..++..-+...
T Consensus 1512 ---------------~eesl~kVFeRAcqycd~~---~V~~~L~~iy~k~ek~~~A~el--------l~~m~KKF~q~~~ 1565 (1710)
T KOG1070|consen 1512 ---------------TEESLKKVFERACQYCDAY---TVHLKLLGIYEKSEKNDEADEL--------LRLMLKKFGQTRK 1565 (1710)
T ss_pred ---------------cHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHhhcchhHHHH--------HHHHHHHhcchhh
Confidence 6778889999999886433 6888888888888888888876 9999999889999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~ 321 (521)
+|.+|+.++.+.++-+.|+.++.||++..|... +|.||.+.|+.+|+|.+|+..+...|.. ..+|..||+.
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR--tDlW~VYid~ 1643 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR--TDLWSVYIDM 1643 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc--hhHHHHHHHH
Confidence 999999999999999999999999999999843 7788888888888888888877755432 3588888888
Q ss_pred HHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc
Q psy8681 322 EVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~ 401 (521)
++.+|+.+.+|.+|+|++.+.-.+ .....++..|++||+.+
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~---------------------------------------kkmKfffKkwLeyEk~~ 1684 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSI---------------------------------------KKMKFFFKKWLEYEKSH 1684 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCCh---------------------------------------hHhHHHHHHHHHHHHhc
Confidence 888888777777777777542110 12235788899999999
Q ss_pred CCHHHHHHHHhhCchhhh
Q psy8681 402 GDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 402 G~~~~~~~v~~~~p~~v~ 419 (521)
||...++.|..|+-..|.
T Consensus 1685 Gde~~vE~VKarA~EYv~ 1702 (1710)
T KOG1070|consen 1685 GDEKNVEYVKARAKEYVE 1702 (1710)
T ss_pred CchhhHHHHHHHHHHHHH
Confidence 999999888877755553
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.83 E-value=1.2e-17 Score=190.11 Aligned_cols=345 Identities=12% Similarity=0.083 Sum_probs=213.5
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS- 108 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P- 108 (521)
+.+++...|.. ..|+. .++...|+++.|..+|+ .|.+ +.+.|+++.|+.+ ++++ ..+|
T Consensus 488 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~ 565 (899)
T TIGR02917 488 FEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA--ELNPQ 565 (899)
T ss_pred HHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCcc
Confidence 34556666666 66665 56666677777766666 3443 4456666666666 6666 6666
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh-------------hHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI-------------EDVIV 175 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~-------------~~~~l 175 (521)
+...|..++.++...|+++.|..+|++++...| .+..+|..++......+ .+..+... ....+
T Consensus 566 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l 641 (899)
T TIGR02917 566 EIEPALALAQYYLGKGQLKKALAILNEAADAAP---DSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQPDSALALLLL 641 (899)
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 556666666666666666666666666665543 24455666555554444 11111100 01112
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHH--------------------------
Q psy8681 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIV-------------------------- 229 (521)
Q Consensus 176 ~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~-------------------------- 229 (521)
+..+...++++.|..+|++++...|.+. ..|..++.+....|+.+.+..++.
T Consensus 642 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 719 (899)
T TIGR02917 642 ADAYAVMKNYAKAITSLKRALELKPDNT--EAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDY 719 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCH
Confidence 2223334577777777777777776654 556666666666666655544410
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
......|++++...|.+ ..+..++..+...|+.++|...+++++...|.+. .+.+....|+.+.|..+|++++.
T Consensus 720 ~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 798 (899)
T TIGR02917 720 PAAIQAYRKALKRAPSS-QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVK 798 (899)
T ss_pred HHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 01122356666666655 5555566666666666666666666666666544 45566677888888888888877
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..|. ...++..++......|+ .+|+.+|++++...| ++.+|..++.++...|+ ++.|..+|++++...|.++
T Consensus 799 ~~p~--~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~~~~~- 871 (899)
T TIGR02917 799 KAPD--NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGE---ADRALPLLRKAVNIAPEAA- 871 (899)
T ss_pred hCCC--CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCh-
Confidence 5543 34566777777777777 778888888887765 56777778888877777 8888888888888887643
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 384 KEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.++..+...-...|+.+.+..+..++
T Consensus 872 -----~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 872 -----AIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 24444444455778888888887665
No 11
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.81 E-value=4.9e-17 Score=185.11 Aligned_cols=182 Identities=12% Similarity=0.061 Sum_probs=84.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++++.|+..|++++...|.+. ..|..++.+....|+.+.+... |++++..+|.+..+|..++.++...|+
T Consensus 615 ~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~ 684 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQPDSA--LALLLLADAYAVMKNYAKAITS--------LKRALELKPDNTEAQIGLAQLLLAAKR 684 (899)
T ss_pred CCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHcCC
Confidence 344444444444444444332 3333344444444444444333 444444444444444444444444444
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
+++|..+++.+....|.+. .+.+....|+++.|...|..++...|.+ ..+..++.++...|++++|...+++
T Consensus 685 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~ 761 (899)
T TIGR02917 685 TESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS---QNAIKLHRALLASGNTAEAVKTLEA 761 (899)
T ss_pred HHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4444444444444444332 2333444555555555555555433321 2344444445555555555555555
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 338 LLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 338 al~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
++...| ++.++..++.++...|+ .+.|..+|++++...|+
T Consensus 762 ~l~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~~~~p~ 802 (899)
T TIGR02917 762 WLKTHPNDAVLRTALAELYLAQKD---YDKAIKHYRTVVKKAPD 802 (899)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHhCCC
Confidence 555443 34455555555555554 55555555555555544
No 12
>KOG4626|consensus
Probab=99.81 E-value=9.9e-18 Score=171.20 Aligned_cols=183 Identities=20% Similarity=0.166 Sum_probs=147.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.+++|...|.+|+..-|... ..+-.++......|..+-|.+ .|+++|...|+-++++.+++..+-..|++
T Consensus 267 ~~d~Avs~Y~rAl~lrpn~A--~a~gNla~iYyeqG~ldlAI~--------~Ykral~~~P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 267 IFDRAVSCYLRALNLRPNHA--VAHGNLACIYYEQGLLDLAID--------TYKRALELQPNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred cchHHHHHHHHHHhcCCcch--hhccceEEEEeccccHHHHHH--------HHHHHHhcCCCchHHHhHHHHHHHhccch
Confidence 44555555555555544443 333333344444455554544 49999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+|...|.+|+..+|... ++..+...|.++.|..+|..++...|. .......++.++.++|++++|...|+.+
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~--~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE--FAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh--hhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 999999999999999865 678888999999999999999996543 2456677788889999999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 339 LERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 339 l~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
|.+.| ....+.+.+.-+...|+ +..|.+.|.+|+...|.-
T Consensus 415 lrI~P~fAda~~NmGnt~ke~g~---v~~A~q~y~rAI~~nPt~ 455 (966)
T KOG4626|consen 415 LRIKPTFADALSNMGNTYKEMGD---VSAAIQCYTRAIQINPTF 455 (966)
T ss_pred HhcCchHHHHHHhcchHHHHhhh---HHHHHHHHHHHHhcCcHH
Confidence 99998 57888889998888888 999999999999999863
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=9.1e-17 Score=176.96 Aligned_cols=251 Identities=17% Similarity=0.139 Sum_probs=182.7
Q ss_pred cchhhHHH-HhhhccCC---CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 91 ERDREEED-ERKDEGDR---DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~---~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.++.|... ++++ .. .| ....|..++.++...|+++.|...|++++...| .....|+.++......|
T Consensus 309 ~y~~A~~~~~~al--~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P---~~~~~~~~la~~~~~~g---- 379 (615)
T TIGR00990 309 SYEEAARAFEKAL--DLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP---RVTQSYIKRASMNLELG---- 379 (615)
T ss_pred hHHHHHHHHHHHH--hcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHCC----
Confidence 45555666 6655 43 34 355666666666666666666666666666643 24455666666555555
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|+++++..|.+. .+|...+.+....|+.+.+... |++++..+|.
T Consensus 380 ------------------~~~eA~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~kal~l~P~ 431 (615)
T TIGR00990 380 ------------------DPDKAEEDFDKALKLNSEDP--DIYYHRAQLHFIKGEFAQAGKD--------YQKSIDLDPD 431 (615)
T ss_pred ------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCcc
Confidence 88888888888888888776 6777788888888888888766 8888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc-----HHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMP-----ELVW 315 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~-----~~lw 315 (521)
+...|..++.++...|++++|...|++++...|.+. ++.+....|+++.|...|++++...|.... ..++
T Consensus 432 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 432 FIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 888888888888888888888888888888888765 577778888888888888888885432111 1122
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
...+.++...|++++|..+|++++...| +..+|+.++..+...|+ ++.|...|++|+...+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~---~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGD---VDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHhccH
Confidence 2222233346888888888888888876 45678888888888888 888888888888887654
No 14
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=1.7e-16 Score=174.85 Aligned_cols=326 Identities=14% Similarity=0.081 Sum_probs=244.6
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH---------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhH
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE---------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~---------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~ 128 (521)
..+...|+++.|...|+ .|+. +...|+++.|+.. .+++ ...| .+..|...+..+...|+++.
T Consensus 135 ~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al--~l~p~~~~a~~~~a~a~~~lg~~~e 212 (615)
T TIGR00990 135 NKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAAL--ELDPDYSKALNRRANAYDGLGKYAD 212 (615)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHH
Confidence 66778999999999999 5754 7788999999999 9999 9999 68999999999999999999
Q ss_pred HHHHHHHHHHhcCC---------------------------ccccHHHHHHHHHH-------------------------
Q psy8681 129 ARKVYERAVEFFGE---------------------------ENLDEKLFIAFAKF------------------------- 156 (521)
Q Consensus 129 Ar~vye~Al~~~~~---------------------------~~~~~~lw~~~a~~------------------------- 156 (521)
|...|..++...+. .+.....|...+.+
T Consensus 213 A~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (615)
T TIGR00990 213 ALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGN 292 (615)
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccccccccc
Confidence 98877655432110 00000000001010
Q ss_pred ------------------HHhhhhhccccch---------hhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy8681 157 ------------------EEGQREKYGDRAG---------IEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYK 209 (521)
Q Consensus 157 ------------------e~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~ 209 (521)
+.... .|..... .....++...+..|+++.|...|++++...|... ..|.
T Consensus 293 ~~~~l~~~~~e~~~~~~y~~A~~-~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~--~~~~ 369 (615)
T TIGR00990 293 GQLQLGLKSPESKADESYEEAAR-AFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVT--QSYI 369 (615)
T ss_pred chHHHHHHHHHhhhhhhHHHHHH-HHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH--HHHH
Confidence 00000 1111110 0112233344566899999999999999999876 6788
Q ss_pred HHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHH
Q psy8681 210 AYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAE 284 (521)
Q Consensus 210 ~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~ 284 (521)
.++......|+.+.+... |++++..+|.++++|..++.++...|++++|...|++++...|... ++.
T Consensus 370 ~la~~~~~~g~~~eA~~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~ 441 (615)
T TIGR00990 370 KRASMNLELGDPDKAEED--------FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGV 441 (615)
T ss_pred HHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHH
Confidence 888888889999999877 9999999999999999999999999999999999999999999865 566
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHH------HHHHHHHH-H
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKV------WMNYAQFE-M 356 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~v------wi~ya~~e-~ 356 (521)
++..+|+++.|...|++++...|. ...+|..++.++...|+++.|+..|++++...|. ..+ |+..+... .
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~ 519 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNFPE--APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQ 519 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHH
Confidence 788899999999999999986654 3578888999999999999999999999998752 222 22222222 2
Q ss_pred HcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 357 SSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 357 ~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|+ +++|..+|++|+...|.+. ..+..+..+....|+.+.+.....+.
T Consensus 520 ~~~~---~~eA~~~~~kAl~l~p~~~------~a~~~la~~~~~~g~~~eAi~~~e~A 568 (615)
T TIGR00990 520 WKQD---FIEAENLCEKALIIDPECD------IAVATMAQLLLQQGDVDEALKLFERA 568 (615)
T ss_pred Hhhh---HHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3466 9999999999999988763 23444555556789988877776555
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.79 E-value=2.1e-16 Score=185.45 Aligned_cols=344 Identities=15% Similarity=0.158 Sum_probs=271.1
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH------------------------HHhcccchhhH
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE------------------------EERDKERDREE 96 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~------------------------e~r~g~~e~Ar 96 (521)
+.+++...|.. .+|+. .++...|+++.|+..|+ .|++ ..+.|+++.|+
T Consensus 292 l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~ 371 (1157)
T PRK11447 292 LQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAE 371 (1157)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHH
Confidence 55777889988 88888 88889999999999998 4532 34678999999
Q ss_pred HH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh----
Q psy8681 97 ED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI---- 170 (521)
Q Consensus 97 ~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~---- 170 (521)
.. ++++ ..+| +...+..++.++...|++++|...|++++...|. +..++..++.+....+ +......
T Consensus 372 ~~~~~Al--~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---~~~a~~~L~~l~~~~~--~~~A~~~l~~l 444 (1157)
T PRK11447 372 RLYQQAR--QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---NTNAVRGLANLYRQQS--PEKALAFIASL 444 (1157)
T ss_pred HHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhcC--HHHHHHHHHhC
Confidence 99 9999 9999 7889999999999999999999999999998663 4566666666543221 0000000
Q ss_pred ----------------hHHH--HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 171 ----------------EDVI--VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 171 ----------------~~~~--l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
...+ ++..+...++++.|+.+|++++...|.+. .++..++......|+.+.|...
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~--~~~~~LA~~~~~~G~~~~A~~~----- 517 (1157)
T PRK11447 445 SASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV--WLTYRLAQDLRQAGQRSQADAL----- 517 (1157)
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH-----
Confidence 0001 12234456899999999999999999876 6788888888999999999877
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------------------------------
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI-------------------------------------- 274 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl-------------------------------------- 274 (521)
|++++..+|.++..++.++.++...++.++|...|+++.
T Consensus 518 ---l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~ 594 (1157)
T PRK11447 518 ---MRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEA 594 (1157)
T ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999988888888888877777766421
Q ss_pred --HcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHH
Q psy8681 275 --ANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVK 346 (521)
Q Consensus 275 --~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~ 346 (521)
...|.+. ++.++...|+++.|+..|+.++...|.+ ...+..++.++...|++++|+.+|++++...| ++.
T Consensus 595 ~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~--~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~ 672 (1157)
T PRK11447 595 LLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN--ADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLN 672 (1157)
T ss_pred HHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChH
Confidence 1234333 6777888999999999999999976643 57888889999999999999999999998876 678
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
++..++......|+ +++|..+|++++...|..+.......++.....+....|+.+.+....++.
T Consensus 673 ~~~~la~~~~~~g~---~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 673 TQRRVALAWAALGD---TAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HHHHHHHHHHhCCC---HHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888988888888 999999999999887654332223456666677888899999888877655
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.1e-16 Score=173.14 Aligned_cols=293 Identities=12% Similarity=-0.011 Sum_probs=204.7
Q ss_pred hcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHH
Q psy8681 69 KQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 69 ~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
..|+++.|..+++ .|.+ .+..|+++.|... ++++ ..+| ++..|..++.++...|+++.|+.
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l--~~~P~~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLL--AVNVCQPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence 4455555555555 3333 3345566666666 6666 5666 45566666666666666666666
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhh-----------HHHHH-hhhhhhhhHHHHHHHHHHHHhcC
Q psy8681 132 VYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-----------DVIVS-KRKFQYEEHERARVIYKYALDHI 199 (521)
Q Consensus 132 vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~-----------~~~l~-~~~~~~~~~e~Ar~iy~~aL~~~ 199 (521)
.|++++...| .+..+|..++......| .+....... ..+.. -.++..|++++|..+|+.++...
T Consensus 132 ~l~~Al~l~P---~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~ 207 (656)
T PRK15174 132 LAEQAWLAFS---GNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFF 207 (656)
T ss_pred HHHHHHHhCC---CcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 6666665533 23445555555444443 111100000 00000 01233458899999999998887
Q ss_pred ChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHH
Q psy8681 200 PKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL----IRETYERAIA 275 (521)
Q Consensus 200 P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~----Ar~~~erAl~ 275 (521)
|.... ..+...+......|+.+.+... |++++..+|.++.++..++.++...|+.++ |...|++++.
T Consensus 208 ~~~~~-~~~~~l~~~l~~~g~~~eA~~~--------~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 208 ALERQ-ESAGLAVDTLCAVGKYQEAIQT--------GESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred CCcch-hHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 64321 2333344555678888888876 999999999999999999999999999885 8999999999
Q ss_pred cCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH-HHHH
Q psy8681 276 NIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV-KVWM 349 (521)
Q Consensus 276 ~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~-~vwi 349 (521)
..|.+. ++.+....|+++.|...|++++...|. ...++..++..+...|+++.|...|++++...|.. ..+.
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~--~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~ 356 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD--LPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNR 356 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHH
Confidence 999865 678888999999999999999997664 35678888889999999999999999999988754 4445
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
..+..+...|+ .+.|...|++++...|+.
T Consensus 357 ~~a~al~~~G~---~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 357 YAAAALLQAGK---TSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHCCC---HHHHHHHHHHHHHhChhh
Confidence 56777788888 999999999999998875
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.79 E-value=3.6e-16 Score=172.60 Aligned_cols=289 Identities=11% Similarity=-0.044 Sum_probs=195.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.++.|+++.|..+ +..+ ..+| +...+..++......|+++.|...|++++...| .++..|..++......|
T Consensus 52 ~~~~g~~~~A~~l~~~~l--~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P---~~~~a~~~la~~l~~~g-- 124 (656)
T PRK15174 52 CLRKDETDVGLTLLSDRV--LTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV---CQPEDVLLVASVLLKSK-- 124 (656)
T ss_pred HHhcCCcchhHHHhHHHH--HhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcC--
Confidence 5678999999999 9999 9999 789999999999999999999999999999966 46778888888887777
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHH--------------
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIV-------------- 229 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~-------------- 229 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+...+.
T Consensus 125 --------------------~~~~Ai~~l~~Al~l~P~~~--~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~ 182 (656)
T PRK15174 125 --------------------QYATVADLAEQAWLAFSGNS--QIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA 182 (656)
T ss_pred --------------------CHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHH
Confidence 45555555555555544443 344444444444444444433300
Q ss_pred -----------hhHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCH
Q psy8681 230 -----------SKRKFQYEEEVNSNPN-NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDM 292 (521)
Q Consensus 230 -----------~krr~~ye~al~~~P~-~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~ 292 (521)
.+....|++++..+|. +...+...+..+...|+.++|...|.+++...|.+. ++.+....|++
T Consensus 183 ~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~ 262 (656)
T PRK15174 183 TCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRS 262 (656)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCc
Confidence 0001125555555542 223333445556666777777777777777666654 46666677777
Q ss_pred HH----HHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHH
Q psy8681 293 ER----ARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367 (521)
Q Consensus 293 e~----Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~A 367 (521)
+. |...|++++...|. ...+|..++.++...|+++.|...|++++...| ++.++..++..+...|+ ++.|
T Consensus 263 ~eA~~~A~~~~~~Al~l~P~--~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~---~~eA 337 (656)
T PRK15174 263 REAKLQAAEHWRHALQFNSD--NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQ---YTAA 337 (656)
T ss_pred hhhHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHH
Confidence 74 78888888876553 356777778888888888888888888888776 56677778887777777 8888
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 368 R~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
...|++++...|.... ........-...|+.+.+.....++
T Consensus 338 ~~~l~~al~~~P~~~~------~~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 338 SDEFVQLAREKGVTSK------WNRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHhCccchH------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8888888877775421 1111122234678877776665554
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.76 E-value=1.7e-15 Score=157.32 Aligned_cols=257 Identities=13% Similarity=0.036 Sum_probs=215.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhhhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEEN-LDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~-~~~~lw~~~a~~e~~~~~~ 163 (521)
...|+++.|... .+++ ..+| ++.+|..++.++...|+++.|..+|++++...+... ....++..++......|
T Consensus 46 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g-- 121 (389)
T PRK11788 46 LLNEQPDKAIDLFIEML--KVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG-- 121 (389)
T ss_pred HhcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC--
Confidence 345778888888 8999 9999 788999999999999999999999999987521100 11245666777777776
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|..+|+++++..|... ..+..++.+....|+.+.+... |++++...
T Consensus 122 --------------------~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~~~~~~ 171 (389)
T PRK11788 122 --------------------LLDRAEELFLQLVDEGDFAE--GALQQLLEIYQQEKDWQKAIDV--------AERLEKLG 171 (389)
T ss_pred --------------------CHHHHHHHHHHHHcCCcchH--HHHHHHHHHHHHhchHHHHHHH--------HHHHHHhc
Confidence 99999999999999877765 6788888888889999988876 99998888
Q ss_pred CCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 244 PNNY-----DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 244 P~~~-----~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
|.+. ..|..++..+...|++++|...|++++...|... ++.++...|+++.|..+|++++...|.. ...
T Consensus 172 ~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~ 250 (389)
T PRK11788 172 GDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEY-LSE 250 (389)
T ss_pred CCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhh-HHH
Confidence 7653 3566788888899999999999999999888755 5677889999999999999999854422 245
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
++...+..+...|+++.|..+|++++...|+..++..++..+...|+ ++.|..+|++++...|+.
T Consensus 251 ~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~---~~~A~~~l~~~l~~~P~~ 315 (389)
T PRK11788 251 VLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQLLEEQEG---PEAAQALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCC---HHHHHHHHHHHHHhCcCH
Confidence 67778888999999999999999999999887777889999999998 999999999999998875
No 19
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.75 E-value=1.8e-15 Score=149.94 Aligned_cols=339 Identities=17% Similarity=0.173 Sum_probs=234.1
Q ss_pred hhhhhhH-HHHHH--HHHHhcCChhhhhhhcC---CCcH------------HHhcccchhhHHH-HhhhccCCCCChhhH
Q psy8681 53 LKLLEKA-KAWKK--AMEEKQGNKIGEEGANK---ENEE------------EERDKERDREEED-ERKDEGDRDSDTTYG 113 (521)
Q Consensus 53 i~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife---~P~~------------e~r~g~~e~Ar~~-eral~~~~~P~~~~W 113 (521)
|+-.|.. --|+. +.++..|.++..|.+|+ .|-. |+...++..+..+ .|++ ...-+.++|
T Consensus 35 IkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL--~k~l~ldLW 112 (660)
T COG5107 35 IKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL--KKSLNLDLW 112 (660)
T ss_pred hhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH--hhhccHhHH
Confidence 4568888 88998 88889999999999999 3432 7777888999999 9998 655579999
Q ss_pred HHHHHHHHHcCCh------hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 114 MRELVFEEQNGFV------SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 114 ~~~a~~e~~~g~~------~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
..|..+-.+.++. ...-++|+-.+...+-++.+..+|..|+.|..... ..+.| .++..++.
T Consensus 113 ~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~-----~~~kw--------EeQqrid~ 179 (660)
T COG5107 113 MLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIE-----ELGKW--------EEQQRIDK 179 (660)
T ss_pred HHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhcc-----ccccH--------HHHHHHHH
Confidence 9999998876532 23445666666654445667889999998876433 11111 12237899
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH---------------------------------------
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI--------------------------------------- 228 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i--------------------------------------- 228 (521)
.|.+|.+||.. |......+|..|-.||...+... +.+.|
T Consensus 180 iR~~Y~ral~t-P~~nleklW~dy~~fE~e~N~~T-arKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~ 257 (660)
T COG5107 180 IRNGYMRALQT-PMGNLEKLWKDYENFELELNKIT-ARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAA 257 (660)
T ss_pred HHHHHHHHHcC-ccccHHHHHHHHHHHHHHHHHHH-HHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccc
Confidence 99999999975 66666789999999987654321 11111
Q ss_pred -------------------------HhhH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-
Q psy8681 229 -------------------------VSKR-KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281 (521)
Q Consensus 229 -------------------------~~kr-r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~- 281 (521)
...| -..|++++.-.|..+.+|++|..++...++-..|...-++++..+|.-.
T Consensus 258 r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~ 337 (660)
T COG5107 258 RTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTM 337 (660)
T ss_pred ccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchhe
Confidence 0111 2468888888999999999999999999888899999999888887632
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcC---------------CCCCC-------------cHHHHHHHHHHHHhcCChHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQ---------------PRLDM-------------PELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~---------------~~~~~-------------~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
|+..+....+.+..+..|+++++. .+.++ -..+|+.+++.-.+...++.||
T Consensus 338 ~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR 417 (660)
T COG5107 338 FLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAAR 417 (660)
T ss_pred eHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 455555555555555555544320 00000 1235555665555544444444
Q ss_pred H-----------------------------------HHHHHHhcCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 333 E-----------------------------------LHERLLERTVHVKVWMN-YAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 333 ~-----------------------------------l~eral~~~~~~~vwi~-ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
. +|+-++..+|+..+++. |..|+...++ -..||++|+.++.
T Consensus 418 ~~F~k~rk~~~~~h~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~ind---e~naraLFetsv~ 494 (660)
T COG5107 418 KLFIKLRKEGIVGHHVYIYCAFIEYYATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRIND---EENARALFETSVE 494 (660)
T ss_pred HHHHHHhccCCCCcceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCc---HHHHHHHHHHhHH
Confidence 4 45555555565555543 6777777776 7888899998887
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCc
Q psy8681 377 ALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLP 415 (521)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p 415 (521)
...+. +-..+|..|+++|..+|+...+-.+.++|-
T Consensus 495 r~~~~----q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 495 RLEKT----QLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHHh----hhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 76653 335799999999999999988877766663
No 20
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.74 E-value=4.9e-15 Score=173.87 Aligned_cols=214 Identities=14% Similarity=0.126 Sum_probs=158.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH------------------------------------------H
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK------------------------------------------K 217 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~------------------------------------------~ 217 (521)
...|++++|...|++++...|.+. ..+..++.+.. .
T Consensus 396 ~~~g~~~eA~~~y~~aL~~~p~~~--~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~ 473 (1157)
T PRK11447 396 MARKDYAAAERYYQQALRMDPGNT--NAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN 473 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 344599999999999999998865 34444333321 2
Q ss_pred cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCH
Q psy8681 218 YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDM 292 (521)
Q Consensus 218 ~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~ 292 (521)
.|+.+.|. ..|++++..+|.++.+++.++.++...|++++|...|++++...|.+. ++.+....|+.
T Consensus 474 ~g~~~eA~--------~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~ 545 (1157)
T PRK11447 474 QGKWAQAA--------ELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRD 545 (1157)
T ss_pred CCCHHHHH--------HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCH
Confidence 23333333 459999999999999999999999999999999999999999888765 23344445555
Q ss_pred HHHHHHHHHHHc----------------------------------------CCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 293 ERARAIYELAIS----------------------------------------QPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 293 e~Ar~ife~al~----------------------------------------~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
+.|...++.+.. ..|. +..++..++.++...|+++.|+
T Consensus 546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~--~~~~~~~La~~~~~~g~~~~A~ 623 (1157)
T PRK11447 546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPP--STRIDLTLADWAQQRGDYAAAR 623 (1157)
T ss_pred HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCC--CchHHHHHHHHHHHcCCHHHHH
Confidence 555555443211 1122 2346777888888999999999
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 333 ELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411 (521)
Q Consensus 333 ~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~ 411 (521)
.+|++++...| ++.+++.++.++...|+ ++.|+.+|++++...|++.. ++..+...-...|+.+.+..+.
T Consensus 624 ~~y~~al~~~P~~~~a~~~la~~~~~~g~---~~eA~~~l~~ll~~~p~~~~------~~~~la~~~~~~g~~~eA~~~~ 694 (1157)
T PRK11447 624 AAYQRVLTREPGNADARLGLIEVDIAQGD---LAAARAQLAKLPATANDSLN------TQRRVALAWAALGDTAAAQRTF 694 (1157)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHhccCCCChH------HHHHHHHHHHhCCCHHHHHHHH
Confidence 99999999987 68999999999999988 99999999999988776542 2222333333689988888877
Q ss_pred hhC
Q psy8681 412 SKL 414 (521)
Q Consensus 412 ~~~ 414 (521)
+++
T Consensus 695 ~~a 697 (1157)
T PRK11447 695 NRL 697 (1157)
T ss_pred HHH
Confidence 665
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.72 E-value=1.5e-14 Score=150.23 Aligned_cols=283 Identities=12% Similarity=0.044 Sum_probs=223.7
Q ss_pred hhhH-HHHHH-HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC-----hhh
Q psy8681 56 LEKA-KAWKK-AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD-----TTY 112 (521)
Q Consensus 56 lP~~-~~W~~-~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~-----~~~ 112 (521)
.+.. ...+. ......|+++.|...|. .|++ +.+.|+++.|..+ ++++ ...+. ...
T Consensus 32 ~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~~ 109 (389)
T PRK11788 32 SNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLL--SRPDLTREQRLLA 109 (389)
T ss_pred hhhccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHh--cCCCCCHHHHHHH
Confidence 3444 34444 55667889999999998 5765 6788999999999 9988 64322 357
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
|..++..+...|+++.|..+|++++...| .....+..++......| ++++|..+|
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~g----------------------~~~~A~~~~ 164 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD---FAEGALQQLLEIYQQEK----------------------DWQKAIDVA 164 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc---chHHHHHHHHHHHHHhc----------------------hHHHHHHHH
Confidence 89999999999999999999999998643 35677888888887777 999999999
Q ss_pred HHHHhcCChhhH---HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 193 KYALDHIPKDRT---AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 193 ~~aL~~~P~~~~---~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
+.++...|.... ..++..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 165 ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL--------LKKALAADPQCVRASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH--------HHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999988775431 23455666677788999988877 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 270 YERAIANIPPTK------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 270 ~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
|++++...|... .+..+...|+++.|...|++++...|.. .++...+.++...|+++.|..+|++++...|
T Consensus 237 ~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 237 LERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA---DLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred HHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 999999877642 4667788999999999999999865532 3447788889999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
+...+..+........+.+...++..+|++.+.
T Consensus 314 ~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 314 SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred CHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 776666555544432211226677777777665
No 22
>KOG1258|consensus
Probab=99.71 E-value=1e-14 Score=150.51 Aligned_cols=319 Identities=23% Similarity=0.278 Sum_probs=239.3
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHH-cCC
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQ-NGF 125 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~-~g~ 125 (521)
.++...|.+ .+|.+ ..|-.+|+...+..+|+ |+| ...| |+.+|+.|+.+... .|+
T Consensus 70 ~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfe------------------rgv--~aip~SvdlW~~Y~~f~~n~~~d 129 (577)
T KOG1258|consen 70 IFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFE------------------RGV--QAIPLSVDLWLSYLAFLKNNNGD 129 (577)
T ss_pred HHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHH------------------HHH--HhhhhHHHHHHHHHHHHhccCCC
Confidence 445578899 99988 66667777776666665 999 9999 99999999999886 478
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh------hccccchhh-----------H----------------
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------KYGDRAGIE-----------D---------------- 172 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~------~~~~~~~~~-----------~---------------- 172 (521)
....|..|++|+...|.++.+..+|..|..|+..++. .|.+...++ .
T Consensus 130 ~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~ 209 (577)
T KOG1258|consen 130 PETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDE 209 (577)
T ss_pred HHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHH
Confidence 8899999999999999888899999999999976651 111111000 0
Q ss_pred -------------------------HHHHh-----------------------hhhh-hhhHHHHHHHHHHHHhc-----
Q psy8681 173 -------------------------VIVSK-----------------------RKFQ-YEEHERARVIYKYALDH----- 198 (521)
Q Consensus 173 -------------------------~~l~~-----------------------~~~~-~~~~e~Ar~iy~~aL~~----- 198 (521)
.++.. ..++ .......+..|+..+..
T Consensus 210 ~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhv 289 (577)
T KOG1258|consen 210 LIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHV 289 (577)
T ss_pred HHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccccccc
Confidence 00000 0000 01222333444444433
Q ss_pred CChh-hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 199 IPKD-RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 199 ~P~~-~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.|.. ....-|..|+.|+...|+...+.-. |++++.-+......|+.|+++++..|+.+-|..++.++.+..
T Consensus 290 kpl~~aql~nw~~yLdf~i~~g~~~~~~~l--------~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~ 361 (577)
T KOG1258|consen 290 KPLDQAQLKNWRYYLDFEITLGDFSRVFIL--------FERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH 361 (577)
T ss_pred CcccHHHHHHHHHHhhhhhhcccHHHHHHH--------HHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc
Confidence 1221 2347899999999999999988765 999999999999999999999999999999999999998864
Q ss_pred -Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH---HHHHHHHhcC--C--C
Q psy8681 278 -PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR---ELHERLLERT--V--H 344 (521)
Q Consensus 278 -P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar---~l~eral~~~--~--~ 344 (521)
|... ++.++...|++..|+.++++..+..|. -..+=..++.++.+.|+.+.+. .++.....-. + .
T Consensus 362 ~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg--~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~ 439 (577)
T KOG1258|consen 362 VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG--LVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGIL 439 (577)
T ss_pred CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc--hhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchh
Confidence 4333 889999999999999999999986543 2456667889999999999999 4444443322 2 4
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHH
Q psy8681 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESR 407 (521)
Q Consensus 345 ~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~ 407 (521)
....+.++.+-..... +.+.|+.++..|+...|.+ ..++..+..|+...+...+.
T Consensus 440 ~~l~~~~~r~~~~i~~--d~~~a~~~l~~~~~~~~~~------k~~~~~~~~~~~~~~~~~e~ 494 (577)
T KOG1258|consen 440 EKLYVKFARLRYKIRE--DADLARIILLEANDILPDC------KVLYLELIRFELIQPSGREY 494 (577)
T ss_pred HHHHHHHHHHHHHHhc--CHHHHHHHHHHhhhcCCcc------HHHHHHHHHHHHhCCcchhh
Confidence 6777888888776532 3999999999999999987 46999999999998866554
No 23
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.69 E-value=1.4e-13 Score=157.31 Aligned_cols=326 Identities=14% Similarity=0.055 Sum_probs=223.7
Q ss_pred HHHhcCChhhhhhhcC---CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHH
Q psy8681 66 MEEKQGNKIGEEGANK---ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKV 132 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife---~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~v 132 (521)
.+...|.+..|..+|. .|+. ..+.|+++.|+.+ .++......|+..+|..++..+.+.|+++.|..+
T Consensus 415 ~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~v 494 (1060)
T PLN03218 415 ACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494 (1060)
T ss_pred HHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHH
Confidence 3445566666666665 3443 4455666666666 6655222334566666666666666666666666
Q ss_pred HHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH------------HH--HHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 133 YERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED------------VI--VSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 133 ye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~------------~~--l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
|+.+...-. ..+...|..++....+.| .+..+..+.. +| |-..+...|.++.|..+|..+...
T Consensus 495 f~eM~~~Gv--~PdvvTynaLI~gy~k~G-~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~ 571 (1060)
T PLN03218 495 FHEMVNAGV--EANVHTFGALIDGCARAG-QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAE 571 (1060)
T ss_pred HHHHHHcCC--CCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 666655311 123455555555544444 1111111100 00 111223345899999999998752
Q ss_pred ----CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8681 199 ----IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYERA 273 (521)
Q Consensus 199 ----~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erA 273 (521)
.|.. ..|..++....+.|+.+.|..+ |+.+...+ +.+..+|..++..+.+.|++++|..+|.++
T Consensus 572 ~~gi~PD~---vTynaLI~ay~k~G~ldeA~el--------f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM 640 (1060)
T PLN03218 572 THPIDPDH---ITVGALMKACANAGQVDRAKEV--------YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640 (1060)
T ss_pred cCCCCCcH---HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3432 6888888888899999888877 88888875 457889999999999999999999999999
Q ss_pred HHc--CCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCH
Q psy8681 274 IAN--IPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER--TVHV 345 (521)
Q Consensus 274 l~~--~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~--~~~~ 345 (521)
... .|+.. ++......|+++.|..+|..+..... .+....|...|..+.+.|+++.|..+|+.+... .|+.
T Consensus 641 ~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pdv 719 (1060)
T PLN03218 641 KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI-KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719 (1060)
T ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 876 45533 45567788999999999999987431 234678999999999999999999999998764 4789
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|..++..+...|. +++|..+|+++...-- .++......++.++. ..|+.+.+..+...|
T Consensus 720 vtyN~LI~gy~k~G~---~eeAlelf~eM~~~Gi-~Pd~~Ty~sLL~a~~----k~G~le~A~~l~~~M 780 (1060)
T PLN03218 720 STMNALITALCEGNQ---LPKALEVLSEMKRLGL-CPNTITYSILLVASE----RKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH----HCCCHHHHHHHHHHH
Confidence 999999999999888 9999999999875421 122233344555544 788888888888777
No 24
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.69 E-value=1.7e-16 Score=157.68 Aligned_cols=248 Identities=17% Similarity=0.162 Sum_probs=107.3
Q ss_pred HhcccchhhHHH-HhhhccCCC--C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRD--S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~--P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~ 162 (521)
.+.|+++.|..+ .+.+ ... | ++..|..++.+....++++.|+.+|++++...+ .++..+..++.+ ...+
T Consensus 19 ~~~~~~~~Al~~L~~~~--~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~---~~~~~~~~l~~l-~~~~- 91 (280)
T PF13429_consen 19 YQRGDYEKALEVLKKAA--QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK---ANPQDYERLIQL-LQDG- 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccc---cccccccccccc-cccc-
Confidence 456777777777 7776 554 5 689999999999999999999999999998743 345566777777 4555
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
++++|..+++.+.+..+.. ..+..++.+....|+.+.+..+ ++++...
T Consensus 92 ---------------------~~~~A~~~~~~~~~~~~~~---~~l~~~l~~~~~~~~~~~~~~~--------l~~~~~~ 139 (280)
T PF13429_consen 92 ---------------------DPEEALKLAEKAYERDGDP---RYLLSALQLYYRLGDYDEAEEL--------LEKLEEL 139 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHH--------HHHHHH-
T ss_pred ---------------------ccccccccccccccccccc---chhhHHHHHHHHHhHHHHHHHH--------HHHHHhc
Confidence 8899999999988776543 5677788888888998888876 6665544
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 243 --NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 243 --~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
.|.++.+|..++.++.+.|+.++|..+|++|+...|++. ++.+....|+.+.++.++.......+.+ +.+|
T Consensus 140 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~--~~~~ 217 (280)
T PF13429_consen 140 PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDD--PDLW 217 (280)
T ss_dssp T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTS--CCHC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCH--HHHH
Confidence 368899999999999999999999999999999999866 5667778899999999988887754332 2489
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
..++..+...|++++|..+|++++...| ++.+...|+..+...|. .++|..++.+++..+
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~---~~~A~~~~~~~~~~l 278 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGR---KDEALRLRRQALRLL 278 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------------
T ss_pred HHHHHHhccccccccccccccccccccccccccccccccccccccc---ccccccccccccccc
Confidence 9999999999999999999999999887 67888899999999998 999999999998754
No 25
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.68 E-value=1.3e-13 Score=155.33 Aligned_cols=341 Identities=7% Similarity=-0.037 Sum_probs=216.4
Q ss_pred CHHHHHhhccCcCcc---CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccc
Q psy8681 34 GWEEVFDYIFPEDEA---AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKER 92 (521)
Q Consensus 34 d~eel~~~~~~~~~~---~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~ 92 (521)
|+-.+..++...+.. +.+++..-|.. ..|.. .++...|++..|..+|+ .|.+ ....|++
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~ 99 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY 99 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 777777777666432 22333233444 45665 67788888888888888 4664 6678888
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI 170 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~ 170 (521)
+.|+.+ ++++ ..+| +.. |..++.++...|+++.|..+|++++...| .+..++..++......+
T Consensus 100 ~eA~~~l~~~l--~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P---~~~~~~~~la~~l~~~~--------- 164 (765)
T PRK10049 100 DEALVKAKQLV--SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP---QTQQYPTEYVQALRNNR--------- 164 (765)
T ss_pred HHHHHHHHHHH--HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC---------
Confidence 888888 8888 8888 677 88888888888888888888888888865 35677777777766665
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHH--------HHH-----------------HHHH---HHHHHc-CCh
Q psy8681 171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTA--------EIY-----------------KAYT---IHEKKY-GDR 221 (521)
Q Consensus 171 ~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~--------~l~-----------------~~~~---~~e~~~-G~~ 221 (521)
..+.|...+++++. .|..... .+. .++. .+.... .+.
T Consensus 165 -------------~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p 230 (765)
T PRK10049 165 -------------LSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNP 230 (765)
T ss_pred -------------ChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCC
Confidence 77788888886665 3332000 000 0011 111110 000
Q ss_pred h---h---H-----HHHH----HhhHHHHHHHHHhhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch---
Q psy8681 222 A---G---I-----EDVI----VSKRKFQYEEEVNSN---PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT--- 280 (521)
Q Consensus 222 ~---~---a-----~~~i----~~krr~~ye~al~~~---P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~--- 280 (521)
. . + ..++ .......|++++... |.+...| ++.++...|++++|..+|++++...|..
T Consensus 231 ~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~--la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 231 DATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRW--VASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHH--HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 0 0 0 0001 012345677766664 3344455 3667777777888888888877765543
Q ss_pred ---h---HHHHHHHcCCHHHHHHHHHHHHcCCCCC-------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 281 ---K---FAELESLLGDMERARAIYELAISQPRLD-------------MPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 281 ---~---~a~le~~~g~~e~Ar~ife~al~~~~~~-------------~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
. ++......|+++.|..+++.++...|.. ....++..++.++...|+++.|..+|++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 2334456788888888888777653310 01234455666777778888888888888877
Q ss_pred CC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 342 TV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 342 ~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.| ++.+|+.++..+...|. ++.|..+|++|+...|++.. ++..........|+.+.+..+.+.+
T Consensus 389 ~P~n~~l~~~lA~l~~~~g~---~~~A~~~l~~al~l~Pd~~~------l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 389 APGNQGLRIDYASVLQARGW---PRAAENELKKAEVLEPRNIN------LEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhhCCCChH------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 76 57788888888877777 88888888888888877632 3333333444567777766666544
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.67 E-value=8.2e-14 Score=156.84 Aligned_cols=308 Identities=10% Similarity=-0.025 Sum_probs=222.7
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH---------HHhcccchhhHHH-HhhhccCCCC-C
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE---------EERDKERDREEED-ERKDEGDRDS-D 109 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~---------e~r~g~~e~Ar~~-eral~~~~~P-~ 109 (521)
..+++.+.|.. .+|.. .+....|+++.|+.+++ .|++ ....|+++.|... ++++ ..+| +
T Consensus 72 ~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al--~~~P~~ 149 (765)
T PRK10049 72 WQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQAL--PRAPQT 149 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCC
Confidence 56777888998 88887 77788999999999998 5664 6678999999999 9999 9999 7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH---HHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH-
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK---LFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH- 185 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~---lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 185 (521)
..++..++.++...+..+.|..++++++. .|.. .... .....+.+....+ ....+.+
T Consensus 150 ~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~-~~~l~~~~~~~~~r~~~~~~-----------------~~~~~r~~ 210 (765)
T PRK10049 150 QQYPTEYVQALRNNRLSAPALGAIDDANL-TPAE-KRDLEADAAAELVRLSFMPT-----------------RSEKERYA 210 (765)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHH-HHHHHHHHHHHHHHhhcccc-----------------cChhHHHH
Confidence 89999999999999999999999987765 3310 0000 0000011110000 0000122
Q ss_pred --HHHHHHHHHHHhcCChh---hHH--HHHHH-HHHHHHHcCChhhHHHHH---------------------------Hh
Q psy8681 186 --ERARVIYKYALDHIPKD---RTA--EIYKA-YTIHEKKYGDRAGIEDVI---------------------------VS 230 (521)
Q Consensus 186 --e~Ar~iy~~aL~~~P~~---~~~--~l~~~-~~~~e~~~G~~~~a~~~i---------------------------~~ 230 (521)
++|...|+.++...|.+ ... ..... ++.+ ...|+.+.|...+ ..
T Consensus 211 ~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~L-l~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e 289 (765)
T PRK10049 211 IADRALAQYDALEALWHDNPDATADYQRARIDRLGAL-LARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPE 289 (765)
T ss_pred HHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHH-HHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcH
Confidence 66777777777543222 100 00000 1111 1223222222111 02
Q ss_pred hHHHHHHHHHhhCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch-------------h-------HHHHH
Q psy8681 231 KRKFQYEEEVNSNPNN----YDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-------------K-------FAELE 286 (521)
Q Consensus 231 krr~~ye~al~~~P~~----~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~-------------~-------~a~le 286 (521)
++...|++++..+|.+ ...+..++..+...|++++|...+++++...|.. . ++.+.
T Consensus 290 ~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l 369 (765)
T PRK10049 290 KAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVA 369 (765)
T ss_pred HHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHH
Confidence 3345699988888866 4567777778889999999999999999987731 1 46677
Q ss_pred HHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhH
Q psy8681 287 SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVS 365 (521)
Q Consensus 287 ~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~ 365 (521)
...|+++.|..+|+.++...|.+ ..+|...+..+...|+++.|..+|++++...| ++.+++..+......++ ++
T Consensus 370 ~~~g~~~eA~~~l~~al~~~P~n--~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~---~~ 444 (765)
T PRK10049 370 KYSNDLPQAEMRARELAYNAPGN--QGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE---WR 444 (765)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC---HH
Confidence 78899999999999999976654 67999999999999999999999999999998 58899999999999888 99
Q ss_pred HHHHHHHHHHHHhccchh
Q psy8681 366 LARRVFERANQALKASSE 383 (521)
Q Consensus 366 ~AR~vferAl~~~~~~~~ 383 (521)
.|..++++++...|+++.
T Consensus 445 ~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 445 QMDVLTDDVVAREPQDPG 462 (765)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 999999999999999864
No 27
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.66 E-value=1.1e-13 Score=154.79 Aligned_cols=319 Identities=12% Similarity=0.078 Sum_probs=238.7
Q ss_pred HHHHhcCChhhhhhhcC-------CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK-------ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-------~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~ 127 (521)
..+...|+++.|++++. .|+. +.+.|+++.|+.+ +++. .|++.+|..++..+.+.|+++
T Consensus 131 ~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~ 206 (697)
T PLN03081 131 EACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYR 206 (697)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHH
Confidence 55667888888888887 4654 7888999999999 8876 378889999999999999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh------------hcc--ccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE------------KYG--DRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~------------~~~--~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
+|..+|++++.... . .+...+..+.......+. ..+ ....++. -|-..+...|.++.|+.+|+
T Consensus 207 ~A~~lf~~M~~~g~-~-p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n-~Li~~y~k~g~~~~A~~vf~ 283 (697)
T PLN03081 207 EAFALFREMWEDGS-D-AEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSC-ALIDMYSKCGDIEDARCVFD 283 (697)
T ss_pred HHHHHHHHHHHhCC-C-CChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHH-HHHHHHHHCCCHHHHHHHHH
Confidence 99999999987522 1 233444444433332220 000 0000000 01223344578999999998
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
..... +. ..|+.++....+.|+.+.|..+ |++..... .-+..++..++..+.+.|.++.|..++..
T Consensus 284 ~m~~~---~~--vt~n~li~~y~~~g~~~eA~~l--------f~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~ 350 (697)
T PLN03081 284 GMPEK---TT--VAWNSMLAGYALHGYSEEALCL--------YYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAG 350 (697)
T ss_pred hCCCC---Ch--hHHHHHHHHHHhCCCHHHHHHH--------HHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 86432 22 6899999999999999999877 88887653 33567899999999999999999999999
Q ss_pred HHHcC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CC
Q psy8681 273 AIANI-PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT--VH 344 (521)
Q Consensus 273 Al~~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~ 344 (521)
+++.. +.+. ++.++.+.|+++.|+.+|+.+... ....|+..|..+.+.|+.++|..+|++++... |+
T Consensus 351 m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~-----d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 351 LIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC-----CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 98864 3222 677888999999999999987653 23579999999999999999999999998754 78
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCc
Q psy8681 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLP 415 (521)
Q Consensus 345 ~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p 415 (521)
...+..++..+...|. +++|..+|+.+....+-.++......++..+. +.|..+.+..+.+++|
T Consensus 426 ~~T~~~ll~a~~~~g~---~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~----r~G~~~eA~~~~~~~~ 489 (697)
T PLN03081 426 HVTFLAVLSACRYSGL---SEQGWEIFQSMSENHRIKPRAMHYACMIELLG----REGLLDEAYAMIRRAP 489 (697)
T ss_pred HHHHHHHHHHHhcCCc---HHHHHHHHHHHHHhcCCCCCccchHhHHHHHH----hcCCHHHHHHHHHHCC
Confidence 8899999998888888 99999999999876554444344555555555 7888888888888776
No 28
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.66 E-value=1.8e-13 Score=153.08 Aligned_cols=366 Identities=16% Similarity=0.120 Sum_probs=264.8
Q ss_pred hhhhHHHHHH--HHHHhcCChhhhhhhcC---CCcH---------HHhcccchhhHHH-HhhhccCC-------------
Q psy8681 55 LLEKAKAWKK--AMEEKQGNKIGEEGANK---ENEE---------EERDKERDREEED-ERKDEGDR------------- 106 (521)
Q Consensus 55 ~lP~~~~W~~--~~e~~~gn~~~Ar~ife---~P~~---------e~r~g~~e~Ar~~-eral~~~~------------- 106 (521)
..|.+..+.. .++-..|+++.|+.+|+ .|+. +.+.|++++|..+ ++++....
T Consensus 154 ~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a 233 (697)
T PLN03081 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233 (697)
T ss_pred CCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHH
Confidence 3454433444 88889999999999999 4554 7788999999999 88752111
Q ss_pred ----------------------CCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 107 ----------------------DSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 107 ----------------------~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
.|+..++..++..+.+.|+++.|+.+|+.+.. .+...|..++......| .+
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~------~~~vt~n~li~~y~~~g-~~ 306 (697)
T PLN03081 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE------KTTVAWNSMLAGYALHG-YS 306 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC------CChhHHHHHHHHHHhCC-CH
Confidence 23455677888999999999999999987632 25567888777776666 22
Q ss_pred cccchhhH------------HH--HHhhhhhhhhHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 165 GDRAGIED------------VI--VSKRKFQYEEHERARVIYKYALDHI-PKDRTAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 165 ~~~~~~~~------------~~--l~~~~~~~~~~e~Ar~iy~~aL~~~-P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
..+..++. +| +-..+...+.++.|..++..+++.. +.+. .++..++....+.|+.+.|..+
T Consensus 307 ~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~--~~~~~Li~~y~k~G~~~~A~~v-- 382 (697)
T PLN03081 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI--VANTALVDLYSKWGRMEDARNV-- 382 (697)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe--eehHHHHHHHHHCCCHHHHHHH--
Confidence 22221111 11 1122445578899999999998763 3333 6888999999999999999877
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCchh----HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN--IPPTK----FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--~P~~~----~a~le~~~g~~e~Ar~ife~al 303 (521)
|++... .+..+|..++..+.+.|+.++|..+|++++.. .|+.. +.......|.++.|..+|+.+.
T Consensus 383 ------f~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 383 ------FDRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred ------HHhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 877643 36789999999999999999999999999874 45543 3444668899999999999998
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 304 SQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
...+..+....|..+++.+.+.|.+++|.++|+++ ...|+..+|..++..+...|+ ++.|+.++++.+...|.+.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~---~~~a~~~~~~l~~~~p~~~- 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKN---LELGRLAAEKLYGMGPEKL- 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC---cHHHHHHHHHHhCCCCCCC-
Confidence 74333334568999999999999999999999875 244788999999999999998 9999999999998877643
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhhcccccCCCCCCeeEE--EEeecCCcccCCCcH-HHHHH
Q psy8681 384 KEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV--FDYIFPEDEAAKPNL-KLLEK 457 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~~~~~~~~~~~~~e~--~d~if~e~~~~~~~~-~~~~~ 457 (521)
.....|...|. ..|..+.+.++.+.|..+ . +....| ..|.+. --+.|.-+....|.. .+.+.
T Consensus 529 -~~y~~L~~~y~----~~G~~~~A~~v~~~m~~~----g-~~k~~g--~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 593 (697)
T PLN03081 529 -NNYVVLLNLYN----SSGRQAEAAKVVETLKRK----G-LSMHPA--CTWIEVKKQDHSFFSGDRLHPQSREIYQK 593 (697)
T ss_pred -cchHHHHHHHH----hCCCHHHHHHHHHHHHHc----C-CccCCC--eeEEEECCeEEEEccCCCCCccHHHHHHH
Confidence 23455556555 899999999999888322 1 112233 234443 125566655455554 34333
No 29
>PLN03077 Protein ECB2; Provisional
Probab=99.65 E-value=1.9e-13 Score=156.49 Aligned_cols=308 Identities=12% Similarity=0.058 Sum_probs=207.6
Q ss_pred hhhhH-HHHHH-HHHHhcCChhhhhhhcC-------CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHH
Q psy8681 55 LLEKA-KAWKK-AMEEKQGNKIGEEGANK-------ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMR 115 (521)
Q Consensus 55 ~lP~~-~~W~~-~~e~~~gn~~~Ar~ife-------~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~ 115 (521)
..|.. .+-.- ..+...|+++.|++++. .|+. +.+.|+++.|+.+ +++. .|++.+|..
T Consensus 284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~ 359 (857)
T PLN03077 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTA 359 (857)
T ss_pred CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHH
Confidence 45665 44433 66677888888888887 3544 7788888888888 8765 367778888
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHH
Q psy8681 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 116 ~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~a 195 (521)
++..+.+.|++++|..+|+.+...-- . ++...+..+.......| .++.|..++..+
T Consensus 360 li~~~~~~g~~~~A~~lf~~M~~~g~-~-Pd~~t~~~ll~a~~~~g----------------------~~~~a~~l~~~~ 415 (857)
T PLN03077 360 MISGYEKNGLPDKALETYALMEQDNV-S-PDEITIASVLSACACLG----------------------DLDVGVKLHELA 415 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC-C-CCceeHHHHHHHHhccc----------------------hHHHHHHHHHHH
Confidence 88888888888888888888766421 1 23334444444444444 555555555555
Q ss_pred HhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 196 L~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
++..... ...+|..++....+.|+.+.|..+ |++.. ..+..+|..++..+.++|+.++|..+|.+++.
T Consensus 416 ~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~v--------f~~m~---~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~ 483 (857)
T PLN03077 416 ERKGLIS-YVVVANALIEMYSKCKCIDKALEV--------FHNIP---EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL 483 (857)
T ss_pred HHhCCCc-chHHHHHHHHHHHHcCCHHHHHHH--------HHhCC---CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 5442111 114455555555555555555444 44322 12344555555555555555555555555544
Q ss_pred cCCchh----------------------------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 276 NIPPTK----------------------------------------FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 276 ~~P~~~----------------------------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
..+++. +..++.+.|+++.|..+|+.. .+ +...|
T Consensus 484 ~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~----d~~s~ 557 (857)
T PLN03077 484 TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EK----DVVSW 557 (857)
T ss_pred CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc--CC----ChhhH
Confidence 322211 456778889999999999886 21 35689
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLER--TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEA 393 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~--~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~ 393 (521)
+.+|..+...|+.++|..+|+++... .|+...+..+...+.+.|. +++|..+|+.+....+-.++......+...
T Consensus 558 n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~---v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~ 634 (857)
T PLN03077 558 NILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGM---VTQGLEYFHSMEEKYSITPNLKHYACVVDL 634 (857)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcCh---HHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 99999999999999999999999875 3788888888888888888 999999999998766655554555555555
Q ss_pred HHHHHHHcCCHHHHHHHHhhCc
Q psy8681 394 WKEFEAQHGDDESRAKLNSKLP 415 (521)
Q Consensus 394 ~~~fE~~~G~~~~~~~v~~~~p 415 (521)
+. +.|..+.+..+.+.||
T Consensus 635 l~----r~G~~~eA~~~~~~m~ 652 (857)
T PLN03077 635 LG----RAGKLTEAYNFINKMP 652 (857)
T ss_pred HH----hCCCHHHHHHHHHHCC
Confidence 55 8999999999999987
No 30
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.64 E-value=1.4e-12 Score=149.15 Aligned_cols=320 Identities=13% Similarity=0.045 Sum_probs=232.2
Q ss_pred HhcCChhhhhhhcC---C-----CcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHH
Q psy8681 68 EKQGNKIGEEGANK---E-----NEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGA 129 (521)
Q Consensus 68 ~~~gn~~~Ar~ife---~-----P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~A 129 (521)
-..|++..|+.+|+ . |+. ..+.|.++.|..+ ..+. . |+..+|..++..+.+.|+++.|
T Consensus 381 ~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~--~--pd~~Tyn~LL~a~~k~g~~e~A 456 (1060)
T PLN03218 381 LRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIR--N--PTLSTFNMLMSVCASSQDIDGA 456 (1060)
T ss_pred HHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcC--C--CCHHHHHHHHHHHHhCcCHHHH
Confidence 36799999999999 1 222 5567889999999 8877 4 9999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH------------HH--HHhhhhhhhhHHHHHHHHHHH
Q psy8681 130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED------------VI--VSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 130 r~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~------------~~--l~~~~~~~~~~e~Ar~iy~~a 195 (521)
+.+|..+...-. ..+..+|..++....+.| .+..+..+.. +| |-..+...|.++.|..+|..+
T Consensus 457 ~~lf~~M~~~Gl--~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M 533 (1060)
T PLN03218 457 LRVLRLVQEAGL--KADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIM 533 (1060)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999987622 246778888888777776 1111111100 01 112234557778888888877
Q ss_pred Hhc--CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh-C--CCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 196 LDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS-N--PNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 196 L~~--~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~-~--P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
... .|.. ..|..++....+.|+.+.+..+ |+++... . .-+..+|..++..+.+.|++++|..+|
T Consensus 534 ~~~Gv~PD~---vTYnsLI~a~~k~G~~deA~~l--------f~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 534 RSKNVKPDR---VVFNALISACGQSGAVDRAFDV--------LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHcCCCCCH---HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 654 2332 5777777777778887777766 7777652 1 224678888888888888888888888
Q ss_pred HHHHHcC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--
Q psy8681 271 ERAIANI-PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-- 342 (521)
Q Consensus 271 erAl~~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-- 342 (521)
+.+.... +++. .+..+.+.|+++.|..+|..+.... ..++...|...|+.+.+.|+++.|..+|+.+.+..
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~G-v~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~ 681 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG-VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK 681 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 8887763 2222 4556778899999999998887742 12245688888888888999999999999988764
Q ss_pred CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 343 ~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
|+..+|..++..+.+.|+ ++.|..+|+.....- -.++...+..|+..|. +.|..+.+..+...|
T Consensus 682 pd~~tynsLI~ay~k~G~---~eeA~~lf~eM~~~g-~~PdvvtyN~LI~gy~----k~G~~eeAlelf~eM 745 (1060)
T PLN03218 682 LGTVSYSSLMGACSNAKN---WKKALELYEDIKSIK-LRPTVSTMNALITALC----EGNQLPKALEVLSEM 745 (1060)
T ss_pred CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHH----HCCCHHHHHHHHHHH
Confidence 678888889998888888 999999999876532 1223233444555554 789999998888877
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=1.6e-15 Score=150.61 Aligned_cols=267 Identities=19% Similarity=0.167 Sum_probs=111.6
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 105 DRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 105 ~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..+|+ ...+.++.++.+.|+++.|.+++.+++.... .+.+..+|..++.+....+ +
T Consensus 4 ~~~~~-~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~-~~~~~~~~~~~a~La~~~~----------------------~ 59 (280)
T PF13429_consen 4 EFGPS-EEALRLARLLYQRGDYEKALEVLKKAAQKIA-PPDDPEYWRLLADLAWSLG----------------------D 59 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccc-ccccccccccccccccccccccccccccccc-ccccccccccccccccccc----------------------c
Confidence 44565 5567889999999999999999988776641 1346789999999888888 9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD 264 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~ 264 (521)
++.|+.+|++++...|.+. ..+..++.+ ...|+...+..+ ++++.... .++..|..++.++...++.+
T Consensus 60 ~~~A~~ay~~l~~~~~~~~--~~~~~l~~l-~~~~~~~~A~~~--------~~~~~~~~-~~~~~l~~~l~~~~~~~~~~ 127 (280)
T PF13429_consen 60 YDEAIEAYEKLLASDKANP--QDYERLIQL-LQDGDPEEALKL--------AEKAYERD-GDPRYLLSALQLYYRLGDYD 127 (280)
T ss_dssp ----------------------------------------------------------------------H-HHHTT-HH
T ss_pred ccccccccccccccccccc--ccccccccc-cccccccccccc--------cccccccc-cccchhhHHHHHHHHHhHHH
Confidence 9999999999998877654 567777777 577888777766 66666554 56788899999999999999
Q ss_pred HHHHHHHHHHHcC--Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 265 LIRETYERAIANI--PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 265 ~Ar~~~erAl~~~--P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
++..+++++.... |.+. ++.++...|+.+.|..+|++++...|. +..++..++.++...|+.++++.++..
T Consensus 128 ~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~--~~~~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 128 EAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD--DPDARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 9999999987644 3333 678899999999999999999997664 367899999999999999999999999
Q ss_pred HHhcC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCch
Q psy8681 338 LLERT-VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPR 416 (521)
Q Consensus 338 al~~~-~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~ 416 (521)
..... +++.+|..++..+...|+ .+.|..+|++++...|+++ .++..+.+.-...|..+.+..|..++-+
T Consensus 206 ~~~~~~~~~~~~~~la~~~~~lg~---~~~Al~~~~~~~~~~p~d~------~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 206 LLKAAPDDPDLWDALAAAYLQLGR---YEEALEYLEKALKLNPDDP------LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHH-HTSCCHCHHHHHHHHHHT----HHHHHHHHHHHHHHSTT-H------HHHHHHHHHHT-----------------
T ss_pred HHHHCcCHHHHHHHHHHHhccccc---ccccccccccccccccccc------cccccccccccccccccccccccccccc
Confidence 99886 578899999999999998 9999999999999999874 5778888888899999999888776644
Q ss_pred hh
Q psy8681 417 RA 418 (521)
Q Consensus 417 ~v 418 (521)
.+
T Consensus 277 ~l 278 (280)
T PF13429_consen 277 LL 278 (280)
T ss_dssp --
T ss_pred cc
Confidence 43
No 32
>PLN03077 Protein ECB2; Provisional
Probab=99.62 E-value=1e-12 Score=150.42 Aligned_cols=363 Identities=13% Similarity=0.056 Sum_probs=251.8
Q ss_pred hhHHHHHH--HHHHhcCChhhhhhhcC---CCcH---------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHH
Q psy8681 57 EKAKAWKK--AMEEKQGNKIGEEGANK---ENEE---------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEE 121 (521)
Q Consensus 57 P~~~~W~~--~~e~~~gn~~~Ar~ife---~P~~---------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~ 121 (521)
|.+..|.. .++-..|+++.|+++|+ .|+. +.+.|++++|..+ +++......|+..++..+...+.
T Consensus 321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~ 400 (857)
T PLN03077 321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACA 400 (857)
T ss_pred cchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHh
Confidence 44444544 77888899999999998 4543 7788889999998 87753345677778888888888
Q ss_pred HcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccch-----------hhHHHHHhhhhhhhhHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG-----------IEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
+.|+++.|.++++.+++.-. ..+..++..++..+.+.| .+..+.. .|...+ ..+.+.+..++|..
T Consensus 401 ~~g~~~~a~~l~~~~~~~g~--~~~~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~d~vs~~~mi-~~~~~~g~~~eA~~ 476 (857)
T PLN03077 401 CLGDLDVGVKLHELAERKGL--ISYVVVANALIEMYSKCK-CIDKALEVFHNIPEKDVISWTSII-AGLRLNNRCFEALI 476 (857)
T ss_pred ccchHHHHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcC-CHHHHHHHHHhCCCCCeeeHHHHH-HHHHHCCCHHHHHH
Confidence 88888888888888877521 134566677777666665 1111111 121111 12233456667777
Q ss_pred HHHHHHhcCChhh---------------------------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHH
Q psy8681 191 IYKYALDHIPKDR---------------------------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 191 iy~~aL~~~P~~~---------------------------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye 237 (521)
+|+.++...+.+. ...++.+++....+.|+.+.|..+ |+
T Consensus 477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~--------f~ 548 (857)
T PLN03077 477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQ--------FN 548 (857)
T ss_pred HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHH--------HH
Confidence 7777665433222 002334455566666766666554 66
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCchh-H---HHHHHHcCCHHHHHHHHHHHHcCCCCCCc
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN--IPPTK-F---AELESLLGDMERARAIYELAISQPRLDMP 311 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--~P~~~-~---a~le~~~g~~e~Ar~ife~al~~~~~~~~ 311 (521)
.. +.+..+|..++..+...|+.++|..+|+++... .|+.. | .......|.+++|..+|+.+....+..+.
T Consensus 549 ~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 549 SH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred hc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 64 668899999999999999999999999999874 45543 3 34466789999999999999854334445
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLL 391 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~ 391 (521)
...|..+++.+.+.|.+++|..+++.+ ...|++.+|-.+...+...++ .+.+..+.++.++..|++.. ....|.
T Consensus 625 ~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~---~e~~e~~a~~l~~l~p~~~~--~y~ll~ 698 (857)
T PLN03077 625 LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDPAVWGALLNACRIHRH---VELGELAAQHIFELDPNSVG--YYILLC 698 (857)
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCC---hHHHHHHHHHHHhhCCCCcc--hHHHHH
Confidence 678999999999999999999999987 356899999999998888888 99999999999999887642 334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhCchhhhhhhcccccCCCCCCeeEE--EEeecCCcccCCCcH
Q psy8681 392 EAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEV--FDYIFPEDEAAKPNL 452 (521)
Q Consensus 392 ~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~~~~~~~~~~~~~e~--~d~if~e~~~~~~~~ 452 (521)
..|. ..|..+.+.++.+.|- .+. +...-| ..|.|. --+.|--+....|..
T Consensus 699 n~ya----~~g~~~~a~~vr~~M~----~~g-~~k~~g--~s~ie~~~~~~~f~~~d~~h~~~ 750 (857)
T PLN03077 699 NLYA----DAGKWDEVARVRKTMR----ENG-LTVDPG--CSWVEVKGKVHAFLTDDESHPQI 750 (857)
T ss_pred HHHH----HCCChHHHHHHHHHHH----HcC-CCCCCC--ccEEEECCEEEEEecCCCCCcch
Confidence 4444 7899999999998882 111 222233 245543 235566555556654
No 33
>KOG1070|consensus
Probab=99.62 E-value=4.6e-14 Score=155.47 Aligned_cols=212 Identities=27% Similarity=0.393 Sum_probs=176.4
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC-Ch--hhHH
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI-PK--DRTA 205 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~-P~--~~~~ 205 (521)
...-|++.+... |.+.-+|+.|..|....+ +++.||.++++||..+ +. ....
T Consensus 1443 saeDferlvrss---PNSSi~WI~YMaf~Lels----------------------EiekAR~iaerAL~tIN~REeeEKL 1497 (1710)
T KOG1070|consen 1443 SAEDFERLVRSS---PNSSILWIRYMAFHLELS----------------------EIEKARKIAERALKTINFREEEEKL 1497 (1710)
T ss_pred CHHHHHHHHhcC---CCcchHHHHHHHHHhhhh----------------------hhHHHHHHHHHHhhhCCcchhHHHH
Confidence 345566666664 457889999999998888 9999999999999876 22 2335
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL 285 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~l 285 (521)
.+|.+|+++|..+|+-+....+ |++|.+.+ ..+.++..+...|...+..+.|-++|+.+++.+.
T Consensus 1498 NiWiA~lNlEn~yG~eesl~kV--------FeRAcqyc-d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------- 1561 (1710)
T KOG1070|consen 1498 NIWIAYLNLENAYGTEESLKKV--------FERACQYC-DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------- 1561 (1710)
T ss_pred HHHHHHHhHHHhhCcHHHHHHH--------HHHHHHhc-chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-------
Confidence 7999999999999988888777 88887643 4467777777777777777777777777665432
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHcCCch
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV---HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~~~vwi~ya~~e~~~g~~~ 362 (521)
....+|..|++|+.++.+-+.|+.++.|||+.-| |+.+--.+|+++.++|+
T Consensus 1562 ------------------------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD-- 1615 (1710)
T KOG1070|consen 1562 ------------------------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD-- 1615 (1710)
T ss_pred ------------------------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC--
Confidence 1246999999999999999999999999999865 78888889999999999
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 363 SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.+++|.+|+--+..+|+ |..+|..|++.|..+|+...++.+.+|.
T Consensus 1616 -aeRGRtlfEgll~ayPK------RtDlW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1616 -AERGRTLFEGLLSAYPK------RTDLWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred -chhhHHHHHHHHhhCcc------chhHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999999999997 4679999999999999999999998776
No 34
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.61 E-value=5.8e-13 Score=151.22 Aligned_cols=247 Identities=9% Similarity=-0.036 Sum_probs=161.1
Q ss_pred ccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccc
Q psy8681 90 KERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~ 168 (521)
++++.|... .+++ ..+|+....+.++......|+++.|...|++++...| ....|..++......|
T Consensus 490 ~~~~eAi~a~~~Al--~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p----~~~a~~~la~all~~G------- 556 (987)
T PRK09782 490 TLPGVALYAWLQAE--QRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM----SNEDLLAAANTAQAAG------- 556 (987)
T ss_pred CCcHHHHHHHHHHH--HhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC----CcHHHHHHHHHHHHCC-------
Confidence 566666666 6666 6666433344455555666777777777777655422 2233555555555555
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
+++.|..+|++++...|... .++..+.......|+.+.|... |++++..+|. ..
T Consensus 557 ---------------d~~eA~~~l~qAL~l~P~~~--~l~~~La~~l~~~Gr~~eAl~~--------~~~AL~l~P~-~~ 610 (987)
T PRK09782 557 ---------------NGAARDRWLQQAEQRGLGDN--ALYWWLHAQRYIPGQPELALND--------LTRSLNIAPS-AN 610 (987)
T ss_pred ---------------CHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHhCCCHHHHHHH--------HHHHHHhCCC-HH
Confidence 77777777777777766553 3333333223344777777665 7777777775 77
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEV 323 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~ 323 (521)
+|..++.++.+.|+.++|...|++++...|.+. ++.+....|+++.|+.+|++++...|.+ ..+|..++..+.
T Consensus 611 a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~--~~a~~nLA~al~ 688 (987)
T PRK09782 611 AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD--PALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Confidence 777777777777777777777777777777665 4555666777777777777777755532 456667777777
Q ss_pred hcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 324 GQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..|+++.|...|++++...| ...+-..++.++....+ +.+|.+.+.|+....+.
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~---~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFN---FRRLHEEVGRRWTFSFD 743 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHH---HHHHHHHHHHHhhcCcc
Confidence 77777777777777777776 45666666666666555 77777777777766554
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.59 E-value=1.5e-12 Score=147.80 Aligned_cols=231 Identities=12% Similarity=-0.014 Sum_probs=195.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|..++.++.. +..+.|..+|.+++...|+ + .....++......| +++.|
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd---~-~~~L~lA~al~~~G----------------------r~eeA 528 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPD---A-WQHRAVAYQAYQVE----------------------DYATA 528 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCc---h-HHHHHHHHHHHHCC----------------------CHHHH
Confidence 36789999999987 7888999999999998763 2 12344444445566 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...|++++...|.. ..+..++....+.|+...+... |++++..+|.+...+..++......|++++|..
T Consensus 529 i~~~rka~~~~p~~---~a~~~la~all~~Gd~~eA~~~--------l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 529 LAAWQKISLHDMSN---EDLLAAANTAQAAGNGAARDRW--------LQQAEQRGLGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHHHHHhccCCCc---HHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999988775554 3466777777889999988877 999999999998887776666667799999999
Q ss_pred HHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-
Q psy8681 269 TYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV- 343 (521)
Q Consensus 269 ~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~- 343 (521)
.|++|+...|... ++.+...+|+++.|...|++++...|.+ ..++..++.++...|+++.|+.+|++++...|
T Consensus 598 ~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~ 675 (987)
T PRK09782 598 DLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNN--SNYQAALGYALWDSGDIAQSREMLERAHKGLPD 675 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999633 5777889999999999999999977653 57899999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.+|..++..+...|+ ++.|+..|++|+...|++.
T Consensus 676 ~~~a~~nLA~al~~lGd---~~eA~~~l~~Al~l~P~~a 711 (987)
T PRK09782 676 DPALIRQLAYVNQRLDD---MAATQHYARLVIDDIDNQA 711 (987)
T ss_pred CHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCCc
Confidence 78999999999999999 9999999999999999874
No 36
>KOG1258|consensus
Probab=99.59 E-value=1.2e-12 Score=135.56 Aligned_cols=317 Identities=20% Similarity=0.283 Sum_probs=219.0
Q ss_pred CCCchhhhhhH-HHHHH-HHHHhcCChhhhhhhcC--CCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHH
Q psy8681 49 AKPNLKLLEKA-KAWKK-AMEEKQGNKIGEEGANK--ENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQ 122 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~-~~e~~~gn~~~Ar~ife--~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~ 122 (521)
+..+++..|++ .+|-. -.... ++++--.+.. ++. ...+.+|.+ ..++ ..+| ....|..++.++.+
T Consensus 21 ~n~~~~~~p~~~~~we~~~~~~~--~f~~wt~li~~~~~~-----~~~~~~r~~y~~fL--~kyPl~~gyW~kfA~~E~k 91 (577)
T KOG1258|consen 21 DNTSLTKYPDSLDYWEILSNDSL--DFDAWTTLIQENDSI-----EDVDALREVYDIFL--SKYPLCYGYWKKFADYEYK 91 (577)
T ss_pred cchhhhhCcchhhHhhccccchh--cccchHHHHhccCch-----hHHHHHHHHHHHHH--hhCccHHHHHHHHHHHHHH
Confidence 45677889999 99965 11000 1111111111 111 123678888 8999 9999 68899999999999
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.|..+.+.+||++++..+| .+..+|.+|..+..... +..+..|..|++|+..+..+
T Consensus 92 lg~~~~s~~Vfergv~aip---~SvdlW~~Y~~f~~n~~---------------------~d~~~lr~~fe~A~~~vG~d 147 (577)
T KOG1258|consen 92 LGNAENSVKVFERGVQAIP---LSVDLWLSYLAFLKNNN---------------------GDPETLRDLFERAKSYVGLD 147 (577)
T ss_pred hhhHHHHHHHHHHHHHhhh---hHHHHHHHHHHHHhccC---------------------CCHHHHHHHHHHHHHhcccc
Confidence 9999999999999999986 57899999999887543 36677999999999987665
Q ss_pred h-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH-HHHHHHHc-----CCHHHHHHHHHHHHH
Q psy8681 203 R-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD-YLRLLEDE-----GNADLIRETYERAIA 275 (521)
Q Consensus 203 ~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~-y~~~~~~~-----g~~~~Ar~~~erAl~ 275 (521)
. +..+|..|+.|+...++...+..+ |++.|...-+.+..+++ |...+.+. -..+++..+-.....
T Consensus 148 F~S~~lWdkyie~en~qks~k~v~~i--------yeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~ 219 (577)
T KOG1258|consen 148 FLSDPLWDKYIEFENGQKSWKRVANI--------YERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAE 219 (577)
T ss_pred hhccHHHHHHHHHHhccccHHHHHHH--------HHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHh
Confidence 2 458999999999888887777766 88888754344333332 22222111 112222111111000
Q ss_pred --cC-----Cchh----------------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCC------CcHHH
Q psy8681 276 --NI-----PPTK----------------------------FAELESLLGDMERARAIYELAISQPRLD------MPELV 314 (521)
Q Consensus 276 --~~-----P~~~----------------------------~a~le~~~g~~e~Ar~ife~al~~~~~~------~~~~l 314 (521)
.. |... --.++...-.....+..|+..|..|... ..-..
T Consensus 220 ~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~n 299 (577)
T KOG1258|consen 220 RSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKN 299 (577)
T ss_pred hhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHH
Confidence 00 0000 1123334456667788888888865321 12467
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEA 393 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~ 393 (521)
|..|++|+...|+++.+.-+|++++..|- +.++|+.|+.+..+.|. .+-|..++.+|.+.+-... ..+-..
T Consensus 300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~---~~~~~~~~~~~~~i~~k~~-----~~i~L~ 371 (577)
T KOG1258|consen 300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGD---VSLANNVLARACKIHVKKT-----PIIHLL 371 (577)
T ss_pred HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCc---hhHHHHHHHhhhhhcCCCC-----cHHHHH
Confidence 99999999999999999999999998774 78899999999999887 9999999999998754331 356777
Q ss_pred HHHHHHHcCCHHHHHHHHhhC
Q psy8681 394 WKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 394 ~~~fE~~~G~~~~~~~v~~~~ 414 (521)
|..||+..||...++.+++++
T Consensus 372 ~a~f~e~~~n~~~A~~~lq~i 392 (577)
T KOG1258|consen 372 EARFEESNGNFDDAKVILQRI 392 (577)
T ss_pred HHHHHHhhccHHHHHHHHHHH
Confidence 888999999988887776554
No 37
>KOG1914|consensus
Probab=99.57 E-value=6.8e-13 Score=134.65 Aligned_cols=296 Identities=18% Similarity=0.306 Sum_probs=215.1
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
++-| ..+| ++..|..+++-.... .++++|.+|++.+..+| ..+.+|..|+..+...+
T Consensus 10 ~~ri--e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP---~s~r~W~~yi~~El~sk---------------- 67 (656)
T KOG1914|consen 10 RERI--EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFP---SSPRAWKLYIERELASK---------------- 67 (656)
T ss_pred HHHH--hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCC---CCcHHHHHHHHHHHHhh----------------
Confidence 4556 7899 899999999987666 99999999999999987 47899999999998888
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHhh---CCCCHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVNS---NPNNYDAWFDY 253 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~~---~P~~~~~W~~y 253 (521)
+++....+|.+||...- ...||..|+..-++. |...+....+ ...|+-++.. ++.++.+|..|
T Consensus 68 ------dfe~VEkLF~RCLvkvL---nlDLW~lYl~YVR~~~~~~~~~r~~m----~qAy~f~l~kig~di~s~siW~eY 134 (656)
T KOG1914|consen 68 ------DFESVEKLFSRCLVKVL---NLDLWKLYLSYVRETKGKLFGYREKM----VQAYDFALEKIGMDIKSYSIWDEY 134 (656)
T ss_pred ------hHHHHHHHHHHHHHHHh---hHhHHHHHHHHHHHHccCcchHHHHH----HHHHHHHHHHhccCcccchhHHHH
Confidence 99999999999997632 248999999876644 3333322111 1235555553 67788888888
Q ss_pred HHHHHH---------cCCHHHHHHHHHHHHHcCCchh-------------------------------------------
Q psy8681 254 LRLLED---------EGNADLIRETYERAIANIPPTK------------------------------------------- 281 (521)
Q Consensus 254 ~~~~~~---------~g~~~~Ar~~~erAl~~~P~~~------------------------------------------- 281 (521)
+.++.. +.+++.+|.+|+||+.. |-..
T Consensus 135 i~FL~~vea~gk~ee~QRI~~vRriYqral~t-Pm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~ 213 (656)
T KOG1914|consen 135 INFLEGVEAVGKYEENQRITAVRRIYQRALVT-PMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN 213 (656)
T ss_pred HHHHHcccccccHHHHHHHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 888753 23677888888888763 3211
Q ss_pred -----------------------------------------------------------------------HHHHHHHcC
Q psy8681 282 -----------------------------------------------------------------------FAELESLLG 290 (521)
Q Consensus 282 -----------------------------------------------------------------------~a~le~~~g 290 (521)
|+.+....+
T Consensus 214 lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s 293 (656)
T KOG1914|consen 214 LTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEIS 293 (656)
T ss_pred HHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhh
Confidence 222222223
Q ss_pred C--------------HHHHHHHHHHHHcCC--------------------------------------CCCCcHHHHHHH
Q psy8681 291 D--------------MERARAIYELAISQP--------------------------------------RLDMPELVWKAY 318 (521)
Q Consensus 291 ~--------------~e~Ar~ife~al~~~--------------------------------------~~~~~~~lw~~y 318 (521)
+ .++|.++|+++|... .. ....+|+.|
T Consensus 294 ~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~-~~tLv~~~~ 372 (656)
T KOG1914|consen 294 DLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDI-DLTLVYCQY 372 (656)
T ss_pred HHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhcc-CCceehhHH
Confidence 3 678888888887420 01 124678899
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEF 397 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~f 397 (521)
++|-.+...+..||.+|.+|-+..- ...|++.-|.+|..+.. +..-|-.||+-++.++++.+ ....+|.+|
T Consensus 373 mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~csk--D~~~AfrIFeLGLkkf~d~p------~yv~~Yldf 444 (656)
T KOG1914|consen 373 MNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSK--DKETAFRIFELGLKKFGDSP------EYVLKYLDF 444 (656)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcC--ChhHHHHHHHHHHHhcCCCh------HHHHHHHHH
Confidence 9999899999999999999988652 35677776666655432 38899999999999999986 488899999
Q ss_pred HHHcCCHHHHHHHHhhCchhhhhhhcccccCCCCCCeeEEEEeecCCc
Q psy8681 398 EAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED 445 (521)
Q Consensus 398 E~~~G~~~~~~~v~~~~p~~v~krr~~~~~~~~~~~~~e~~d~if~e~ 445 (521)
-...|+...++.+.++. +++ .+ +-+..-.+|.-|++|.+.=+
T Consensus 445 L~~lNdd~N~R~LFEr~---l~s--~l-~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 445 LSHLNDDNNARALFERV---LTS--VL-SADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred HHHhCcchhHHHHHHHH---Hhc--cC-ChhhhHHHHHHHHHHHHhcc
Confidence 99999999999998887 433 11 11211248999999976654
No 38
>KOG2396|consensus
Probab=99.57 E-value=1.4e-12 Score=131.58 Aligned_cols=252 Identities=21% Similarity=0.297 Sum_probs=195.0
Q ss_pred hHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH
Q psy8681 95 EEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED 172 (521)
Q Consensus 95 Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~ 172 (521)
...+ .+++ ..+| ++.+|..|+.|..+.+.+.+..++|..++...| .++.+|+..|.++...+
T Consensus 90 Iv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp---~~~dLWI~aA~wefe~n----------- 153 (568)
T KOG2396|consen 90 IVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHP---NNPDLWIYAAKWEFEIN----------- 153 (568)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCC---CCchhHHhhhhhHHhhc-----------
Confidence 4445 7788 8888 899999999999999999999999999999955 57899999999988776
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh----------------HHHHH--------
Q psy8681 173 VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG----------------IEDVI-------- 228 (521)
Q Consensus 173 ~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~----------------a~~~i-------- 228 (521)
.+++.||++|.++|..+|.+. .+|..|..+|-.+-.... ++...
T Consensus 154 ----------~ni~saRalflrgLR~npdsp--~Lw~eyfrmEL~~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~ 221 (568)
T KOG2396|consen 154 ----------LNIESARALFLRGLRFNPDSP--KLWKEYFRMELMYAEKLRNRREELGLDSSDKDEEIERGELAWINYAN 221 (568)
T ss_pred ----------cchHHHHHHHHHHhhcCCCCh--HHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhcc
Confidence 158999999999999999987 899999988865522111 10000
Q ss_pred -----------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc------------------C-CHHHH
Q psy8681 229 -----------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE------------------G-NADLI 266 (521)
Q Consensus 229 -----------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~------------------g-~~~~A 266 (521)
...++..+.-.....|.++.+|..++.-...- | ..+..
T Consensus 222 s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~~~~~~~np~~~~~laqr~l~i~~~tdl~~~~~~~~~~~~~~k~s~~ 301 (568)
T KOG2396|consen 222 SVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDLQSKAPDNPLLWDDLAQRELEILSQTDLQHTDNQAKAVEVGSKESRC 301 (568)
T ss_pred chhhhhcchhhcchHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHhhccchhhhhhchhcchhHHHH
Confidence 01233444555556788888887776654320 0 23345
Q ss_pred HHHHHHHHHcCCchh-----------------------------------------------------------------
Q psy8681 267 RETYERAIANIPPTK----------------------------------------------------------------- 281 (521)
Q Consensus 267 r~~~erAl~~~P~~~----------------------------------------------------------------- 281 (521)
..+|+.++..+|...
T Consensus 302 ~~v~ee~v~~l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l 381 (568)
T KOG2396|consen 302 CAVYEEAVKTLPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKL 381 (568)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHh
Confidence 567777777666543
Q ss_pred --------------------------------------------------------------------------------
Q psy8681 282 -------------------------------------------------------------------------------- 281 (521)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (521)
T Consensus 382 ~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~~~~~~t 461 (568)
T KOG2396|consen 382 TTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVIGADSVT 461 (568)
T ss_pred hHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhcCCceee
Confidence
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc--CChHHHHHHHHHHHhcC-CCHHHHHHHHHH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ--GERDKVRELHERLLERT-VHVKVWMNYAQF 354 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~--g~~~~Ar~l~eral~~~-~~~~vwi~ya~~ 354 (521)
|..+....|.+..||.+|.+....||+ +..++..+|+||..+ .++..+|.+|++++.-+ .++.+|..|..+
T Consensus 462 l~s~~l~~~~e~~~~~~ark~y~~l~~lpp~--sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~lw~~y~~~ 539 (568)
T KOG2396|consen 462 LKSKYLDWAYESGGYKKARKVYKSLQELPPF--SLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSDLWMDYMKE 539 (568)
T ss_pred hhHHHHHHHHHhcchHHHHHHHHHHHhCCCc--cHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChHHHHHHHHh
Confidence 666677889999999999999888875 467999999998764 46899999999999877 589999999999
Q ss_pred HHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 355 EMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 355 e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+..+|. .+.|-.+|.||...+.
T Consensus 540 e~~~g~---~en~~~~~~ra~ktl~ 561 (568)
T KOG2396|consen 540 ELPLGR---PENCGQIYWRAMKTLQ 561 (568)
T ss_pred hccCCC---cccccHHHHHHHHhhC
Confidence 999998 8999999999998764
No 39
>KOG1126|consensus
Probab=99.55 E-value=3.5e-13 Score=140.20 Aligned_cols=274 Identities=11% Similarity=0.046 Sum_probs=199.1
Q ss_pred cchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH-----HHHHHHHHHHhhhh-
Q psy8681 91 ERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK-----LFIAFAKFEEGQRE- 162 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~-----lw~~~a~~e~~~~~- 162 (521)
+..+|..+ ++.. ..|+ ...+...+|..+...++++.|+++|+.+-...|--....+ +|..--.+....-+
T Consensus 334 ~~~~A~~~~~klp--~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 334 NCREALNLFEKLP--SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHhhH--HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 45677777 7765 6677 4566677888888899999999999998887553222222 22211111110000
Q ss_pred -hccccchhhHHHHH--hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH
Q psy8681 163 -KYGDRAGIEDVIVS--KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 163 -~~~~~~~~~~~~l~--~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a 239 (521)
.......-+..|.. ..+.-++++++|...|++|++.+|... ..|..++.=.......+.+... |..|
T Consensus 412 ~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~fa--YayTLlGhE~~~~ee~d~a~~~--------fr~A 481 (638)
T KOG1126|consen 412 DLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFA--YAYTLLGHESIATEEFDKAMKS--------FRKA 481 (638)
T ss_pred HHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccc--hhhhhcCChhhhhHHHHhHHHH--------HHhh
Confidence 00000111122221 112224699999999999999999754 3444433222222334555554 9999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
|..+|.+|.+|+.++..+.+.+..+.|.-.|++|+.++|.+. ++.++..+|..+.|..+|++|+..+|.++-..+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~ 561 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY 561 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence 999999999999999999999999999999999999999876 678899999999999999999998776533233
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
- -+.++...+.+++|...++.+-+.-| ...++..++..+...|+ .+.|..-|-=|....|..
T Consensus 562 ~--~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~---~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 562 H--RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN---TDLALLHFSWALDLDPKG 624 (638)
T ss_pred H--HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc---chHHHHhhHHHhcCCCcc
Confidence 2 35667788999999999999999887 57789999999999998 899999999999888864
No 40
>KOG2076|consensus
Probab=99.54 E-value=8.5e-12 Score=133.59 Aligned_cols=246 Identities=16% Similarity=0.151 Sum_probs=188.5
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
.|++++|..+ ...| ...| ....|..++..+++.|+.+++...+-.|-.+.| .+..+|..++.+...++
T Consensus 152 rg~~eeA~~i~~EvI--kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p---~d~e~W~~ladls~~~~----- 221 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVI--KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP---KDYELWKRLADLSEQLG----- 221 (895)
T ss_pred hCCHHHHHHHHHHHH--HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC---CChHHHHHHHHHHHhcc-----
Confidence 4778888888 8888 7888 678888888888888888888777777766654 35578888888888777
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
.+.+|+-+|.+||+..|.+. .+.-....+.+++|+...+... |.+++..+|..
T Consensus 222 -----------------~i~qA~~cy~rAI~~~p~n~--~~~~ers~L~~~~G~~~~Am~~--------f~~l~~~~p~~ 274 (895)
T KOG2076|consen 222 -----------------NINQARYCYSRAIQANPSNW--ELIYERSSLYQKTGDLKRAMET--------FLQLLQLDPPV 274 (895)
T ss_pred -----------------cHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHhChHHHHHHH--------HHHHHhhCCch
Confidence 88888888888888888876 6666677778888887777665 77777777732
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------Cchh----------------------------------
Q psy8681 247 -----YDAWFDYLRLLEDEGNADLIRETYERAIANI------PPTK---------------------------------- 281 (521)
Q Consensus 247 -----~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~------P~~~---------------------------------- 281 (521)
.+.-..++..+...++.+.|.+.++.++... |+..
T Consensus 275 d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~ 354 (895)
T KOG2076|consen 275 DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEW 354 (895)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhh
Confidence 1222334444555555577777777766621 1111
Q ss_pred -----------------------------------------------------------------HHHHHHHcCCHHHHH
Q psy8681 282 -----------------------------------------------------------------FAELESLLGDMERAR 296 (521)
Q Consensus 282 -----------------------------------------------------------------~a~le~~~g~~e~Ar 296 (521)
.+.+....|.+..|.
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 355 DTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 356677889999999
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.+|..++..++.. ...+|...+..+...|.++.|...|+++|...| +.++-+.++.+....|+ .++|..++++.+
T Consensus 435 ~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~---~EkalEtL~~~~ 510 (895)
T KOG2076|consen 435 RLLSPITNREGYQ-NAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGN---HEKALETLEQII 510 (895)
T ss_pred HHHHHHhcCcccc-chhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCC---HHHHHHHHhccc
Confidence 9999999987654 367999999999999999999999999999987 78899999999999998 898888888765
No 41
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=1.4e-11 Score=128.60 Aligned_cols=271 Identities=10% Similarity=0.027 Sum_probs=210.9
Q ss_pred HhcCChhhhhhhcC-C------CcH--------HHhcccchhhHHH-HhhhccCCCCCh--hhHHHHHHHHHHcCChhHH
Q psy8681 68 EKQGNKIGEEGANK-E------NEE--------EERDKERDREEED-ERKDEGDRDSDT--TYGMRELVFEEQNGFVSGA 129 (521)
Q Consensus 68 ~~~gn~~~Ar~ife-~------P~~--------e~r~g~~e~Ar~~-eral~~~~~P~~--~~W~~~a~~e~~~g~~~~A 129 (521)
...||++.|++... . |.- ..+.|+++.|... .++. ...|+. ......+.+....|+++.|
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~--~~~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAA--ELADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCcchHHHHHHHHHHHHHCCCHHHH
Confidence 34599999998888 2 221 4788999999999 9999 888854 3344558899999999999
Q ss_pred HHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH--HHH
Q psy8681 130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT--AEI 207 (521)
Q Consensus 130 r~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~--~~l 207 (521)
...++++++..| .++.+....+......| +++.|..++....+..+.+.. ..+
T Consensus 173 l~~l~~~~~~~P---~~~~al~ll~~~~~~~g----------------------dw~~a~~~l~~l~k~~~~~~~~~~~l 227 (398)
T PRK10747 173 RHGVDKLLEVAP---RHPEVLRLAEQAYIRTG----------------------AWSSLLDILPSMAKAHVGDEEHRAML 227 (398)
T ss_pred HHHHHHHHhcCC---CCHHHHHHHHHHHHHHH----------------------hHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999999866 35677777778887777 999999999998877554321 111
Q ss_pred H-HHHHHHHH---HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHH
Q psy8681 208 Y-KAYTIHEK---KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA 283 (521)
Q Consensus 208 ~-~~~~~~e~---~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a 283 (521)
. ..|..+.. ...+.+.+..+ ++......|+++.++..|+..+...|+.+.|..+++++++..|+...+
T Consensus 228 ~~~a~~~l~~~~~~~~~~~~l~~~--------w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~ 299 (398)
T PRK10747 228 EQQAWIGLMDQAMADQGSEGLKRW--------WKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLV 299 (398)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHH--------HHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHH
Confidence 1 22222111 11222222222 344434457799999999999999999999999999999965544433
Q ss_pred HHHH--HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCc
Q psy8681 284 ELES--LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDE 361 (521)
Q Consensus 284 ~le~--~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~ 361 (521)
.++. ..|+.+.+....+..++..|.+ ..+...++.+....|++++|+..|++++...|+...++.++..+...|+
T Consensus 300 ~l~~~l~~~~~~~al~~~e~~lk~~P~~--~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~- 376 (398)
T PRK10747 300 LLIPRLKTNNPEQLEKVLRQQIKQHGDT--PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK- 376 (398)
T ss_pred HHHhhccCCChHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-
Confidence 3333 4499999999999999977754 5789999999999999999999999999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy8681 362 DSVSLARRVFERANQAL 378 (521)
Q Consensus 362 ~~~~~AR~vferAl~~~ 378 (521)
.+.|..+|++++...
T Consensus 377 --~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 377 --PEEAAAMRRDGLMLT 391 (398)
T ss_pred --HHHHHHHHHHHHhhh
Confidence 999999999998865
No 42
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=2.9e-11 Score=126.67 Aligned_cols=271 Identities=10% Similarity=-0.025 Sum_probs=205.0
Q ss_pred HHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCCh--hhHHHHHHHHHHcCChh
Q psy8681 66 MEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSDT--TYGMRELVFEEQNGFVS 127 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~~--~~W~~~a~~e~~~g~~~ 127 (521)
+....|++..|++.+. .|+. ..+.|+++.|..+ .++. ..+|+. .+...++.+....|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~--~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAA--ELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCcCchHHHHHHHHHHHHCCCHH
Confidence 4456788888888877 3432 5566888888888 8888 778843 46666788888888888
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-H-
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-A- 205 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~- 205 (521)
.|+..+++.++..| .++.++..++......| +++.|..++...++..+.+.. .
T Consensus 171 ~Al~~l~~l~~~~P---~~~~~l~ll~~~~~~~~----------------------d~~~a~~~l~~l~k~~~~~~~~~~ 225 (409)
T TIGR00540 171 AARHGVDKLLEMAP---RHKEVLKLAEEAYIRSG----------------------AWQALDDIIDNMAKAGLFDDEEFA 225 (409)
T ss_pred HHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHh----------------------hHHHHHHHHHHHHHcCCCCHHHHH
Confidence 88888888888865 35667777777777777 889999998888876322211 0
Q ss_pred ----HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 206 ----EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP----NNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 206 ----~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P----~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.+|..++. .|..+... ..+..+....| +++.++..++..+...|+.+.|..+++++++..
T Consensus 226 ~l~~~a~~~~l~----~~~~~~~~--------~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~ 293 (409)
T TIGR00540 226 DLEQKAEIGLLD----EAMADEGI--------DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL 293 (409)
T ss_pred HHHHHHHHHHHH----HHHHhcCH--------HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Confidence 11211111 11111111 22666667677 699999999999999999999999999999999
Q ss_pred CchhH---HHH----HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH--HHHhcCCCHHHH
Q psy8681 278 PPTKF---AEL----ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHE--RLLERTVHVKVW 348 (521)
Q Consensus 278 P~~~~---a~l----e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~e--ral~~~~~~~vw 348 (521)
|++.. ..+ ....++...++..++++++..|.++...+..+++.++.+.|++++|++.|+ .++...|++..+
T Consensus 294 pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~ 373 (409)
T TIGR00540 294 GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL 373 (409)
T ss_pred CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH
Confidence 98761 111 223578899999999999977765322677888999999999999999999 577788988888
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 349 MNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 349 i~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
..++..+...|+ .+.|+.+|++|+...
T Consensus 374 ~~La~ll~~~g~---~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 374 AMAADAFDQAGD---KAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 899999999998 999999999998764
No 43
>KOG1155|consensus
Probab=99.52 E-value=5.5e-11 Score=119.06 Aligned_cols=268 Identities=16% Similarity=0.111 Sum_probs=197.4
Q ss_pred hcccchhhHHH-HhhhccCC-CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh---
Q psy8681 88 RDKERDREEED-ERKDEGDR-DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR--- 161 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~-~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~--- 161 (521)
+....++++.- ++.+ .. +| +.-+=...|...-...++++|..+|+..++..|=...+-+++.+..-....+.
T Consensus 239 el~q~~e~~~k~e~l~--~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs 316 (559)
T KOG1155|consen 239 ELHQHEEALQKKERLS--SVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS 316 (559)
T ss_pred HHHHHHHHHHHHHHHH--hccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence 34467788888 8877 66 78 44444444555556679999999999999986644344455544322111110
Q ss_pred ---------hhccc--cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHh
Q psy8681 162 ---------EKYGD--RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVS 230 (521)
Q Consensus 162 ---------~~~~~--~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~ 230 (521)
.+|.. +.-+.+. +.-.++.+.|...|++||+.+|... .+|...+.=.....+...|...
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNY-----YSlr~eHEKAv~YFkRALkLNp~~~--~aWTLmGHEyvEmKNt~AAi~s--- 386 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANY-----YSLRSEHEKAVMYFKRALKLNPKYL--SAWTLMGHEYVEMKNTHAAIES--- 386 (559)
T ss_pred HHHHHHHHhccCCccceeeehhH-----HHHHHhHHHHHHHHHHHHhcCcchh--HHHHHhhHHHHHhcccHHHHHH---
Confidence 01110 0000000 0112588999999999999999877 7899888765666777778777
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
|.+|+..||.|+.+|+.+|+.+...+-+.-|.-.|++|+..-|.+. +++.+.+++..+.|.+.|.+|+..
T Consensus 387 -----YRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 387 -----YRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred -----HHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999877 788899999999999999999986
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-------C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-------V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-------~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
... ...+....++++.+.++..+|-..|++.++.. + ..++-+-++.++.+.++ +++|-....+++..
T Consensus 462 ~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~---~~~As~Ya~~~~~~ 536 (559)
T KOG1155|consen 462 GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKD---FDEASYYATLVLKG 536 (559)
T ss_pred ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcc---hHHHHHHHHHHhcC
Confidence 543 24566677889999999999999999999842 3 23444447888888877 77777666665544
No 44
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.51 E-value=5.3e-12 Score=116.28 Aligned_cols=190 Identities=22% Similarity=0.281 Sum_probs=161.8
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----H
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----F 282 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~ 282 (521)
...++--..+.|+...|..- ++++|..+|+++.+|..++.++...|..+.|.+.|++|++..|.+. |
T Consensus 38 rlqLal~YL~~gd~~~A~~n--------lekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY 109 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKN--------LEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence 33333334467998888766 9999999999999999999999999999999999999999999876 9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCc
Q psy8681 283 AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDE 361 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~ 361 (521)
+.|...+|.++.|..-|++|+..|..-.+...|...+-.-.+.|..+.|+..|+++|...| .+......+..+...|+
T Consensus 110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~- 188 (250)
T COG3063 110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGD- 188 (250)
T ss_pred hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhccc-
Confidence 9999999999999999999999875544556666666666689999999999999999987 58889999999999988
Q ss_pred hhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 362 DSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 362 ~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+-.||..|++-....+.+. ..||..|. |++..||...+..-...+
T Consensus 189 --y~~Ar~~~~~~~~~~~~~A-----~sL~L~ir-iak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 189 --YAPARLYLERYQQRGGAQA-----ESLLLGIR-IAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred --chHHHHHHHHHHhcccccH-----HHHHHHHH-HHHHhccHHHHHHHHHHH
Confidence 9999999999988877553 35666665 999999999887766554
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.51 E-value=1.4e-11 Score=133.79 Aligned_cols=263 Identities=10% Similarity=-0.032 Sum_probs=192.0
Q ss_pred ChhhHHHHHHHH--HHc---CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 109 DTTYGMRELVFE--EQN---GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 109 ~~~~W~~~a~~e--~~~---g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
+.+.|..|..-. ... ++++.|...|++|++..| .+...|..++.+....+ ..+. ....+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP---~~a~a~~~La~~~~~~~-~~g~------------~~~~~ 318 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP---NSIAPYCALAECYLSMA-QMGI------------FDKQN 318 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHHH-HcCC------------cccch
Confidence 456555554432 221 346799999999999965 45667776666544332 0000 00112
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.++.|...+++|++..|.+. ..|..++......|+.+.|... |++++..+|+++.+|..++.++...|++
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~Al~l~P~~~~a~~~lg~~l~~~G~~ 388 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNP--QALGLLGLINTIHSEYIVGSLL--------FKQANLLSPISADIKYYYGWNLFMAGQL 388 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 68999999999999999987 7788888888889999999877 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP-RLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~-~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
++|...|++|+...|... .+.+....|+++.|...+++++... |. ....+..++.++...|++++|+..+.+
T Consensus 389 ~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~--~~~~~~~la~~l~~~G~~~eA~~~~~~ 466 (553)
T PRK12370 389 EEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD--NPILLSMQVMFLSLKGKHELARKLTKE 466 (553)
T ss_pred HHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc--CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 999999999999999864 2334556899999999999998753 33 245666677788899999999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 338 LLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 338 al~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
++...|. ...+..++......| +.|...+++.+........ -......|+.-+|+.+...-.
T Consensus 467 ~~~~~~~~~~~~~~l~~~~~~~g-----~~a~~~l~~ll~~~~~~~~------~~~~~~~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 467 ISTQEITGLIAVNLLYAEYCQNS-----ERALPTIREFLESEQRIDN------NPGLLPLVLVAHGEAIAEKMW 529 (553)
T ss_pred hhhccchhHHHHHHHHHHHhccH-----HHHHHHHHHHHHHhhHhhc------CchHHHHHHHHHhhhHHHHHH
Confidence 8877764 555666666655554 3777777776654432211 111145566677888766555
No 46
>KOG2002|consensus
Probab=99.48 E-value=1.2e-11 Score=133.37 Aligned_cols=311 Identities=16% Similarity=0.186 Sum_probs=215.7
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH-----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC--
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE-----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-- 124 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-- 124 (521)
.++...||++.|...|- .|++ ++..|+++.|... ++.+ ...| +.++-..+|.++...+
T Consensus 315 Rs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~--k~~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 315 RSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL--KQLPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH--HhCcchHHHHHHHHhHHHhhhhh
Confidence 88999999999999997 4544 9999999999999 9999 9999 6888999999988775
Q ss_pred --ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh-----hccccch--------hhHHHHHh---hhhhhhhHH
Q psy8681 125 --FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE-----KYGDRAG--------IEDVIVSK---RKFQYEEHE 186 (521)
Q Consensus 125 --~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~-----~~~~~~~--------~~~~~l~~---~~~~~~~~e 186 (521)
..+.|..+..+++...| .+...|+.++.+.+.... .|.++.. ++-.+|+. -.+..|.++
T Consensus 393 ~~~~d~a~~~l~K~~~~~~---~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~ 469 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTP---VDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIE 469 (1018)
T ss_pred hHHHHHHHHHHHHHHhccc---ccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChH
Confidence 56889999999998864 578899999988776550 1222211 22222322 234558999
Q ss_pred HHHHHHHHHHhcC-----Chh---hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 187 RARVIYKYALDHI-----PKD---RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 187 ~Ar~iy~~aL~~~-----P~~---~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
.|...|..|+..+ +.. ....+-..++.+....++++.|... |...+..+|...+.++.++.+..
T Consensus 470 ~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~--------Yk~Ilkehp~YId~ylRl~~ma~ 541 (1018)
T KOG2002|consen 470 KALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEM--------YKSILKEHPGYIDAYLRLGCMAR 541 (1018)
T ss_pred HHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHH--------HHHHHHHCchhHHHHHHhhHHHH
Confidence 9999999999872 111 1112334445666677777777765 66666666666666666655555
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh------------------------------------H-----HHH------------
Q psy8681 259 DEGNADLIRETYERAIANIPPTK------------------------------------F-----AEL------------ 285 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~------------------------------------~-----a~l------------ 285 (521)
..++..+|...+..++..+..+. | +++
T Consensus 542 ~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ 621 (1018)
T KOG2002|consen 542 DKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNP 621 (1018)
T ss_pred hccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccCh
Confidence 55555555555555555432211 1 221
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCch
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKA--YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~--yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~ 362 (521)
+...+..++|.++|.+++...|.+ +|.+ .+-.+...|++..|+.+|.+..+... ...+|+++|.++..+|+
T Consensus 622 ek~kk~~~KAlq~y~kvL~~dpkN----~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~q-- 695 (1018)
T KOG2002|consen 622 EKEKKHQEKALQLYGKVLRNDPKN----MYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQ-- 695 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcch----hhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHH--
Confidence 224567888899999998877654 4443 33456788999999999999888764 78899999999988887
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q psy8681 363 SVSLARRVFERANQALKASSEKEERVMLLEAWK 395 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~ 395 (521)
+-.|.++|+.++..+-.+.+.+--..|-.+|.
T Consensus 696 -y~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y 727 (1018)
T KOG2002|consen 696 -YRLAIQMYENCLKKFYKKNRSEVLHYLARAWY 727 (1018)
T ss_pred -HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence 99999999999988765433222233444444
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.47 E-value=3.4e-11 Score=120.46 Aligned_cols=226 Identities=16% Similarity=0.115 Sum_probs=168.3
Q ss_pred ChhHHHHHHHHHHHhcCCcc-ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 125 FVSGARKVYERAVEFFGEEN-LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 125 ~~~~Ar~vye~Al~~~~~~~-~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
..+.++.-+.++|...+..+ ..+..|...+......| .++.|+..|+++++..|.+.
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g----------------------~~~~A~~~~~~Al~l~P~~~ 98 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG----------------------LRALARNDFSQALALRPDMA 98 (296)
T ss_pred HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHcCCCCH
Confidence 45667777777776543222 23567777777777777 88999999999999999876
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--
Q psy8681 204 TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-- 281 (521)
Q Consensus 204 ~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-- 281 (521)
..|..++......|+.+.|... |++++..+|.+..+|..++..+...|++++|...|++++...|.+.
T Consensus 99 --~a~~~lg~~~~~~g~~~~A~~~--------~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~ 168 (296)
T PRK11189 99 --DAYNYLGIYLTQAGNFDAAYEA--------FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYR 168 (296)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 7888888888899999988876 9999999999999999999999999999999999999999999875
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-------cCC-CHHHHHHH
Q psy8681 282 --FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE-------RTV-HVKVWMNY 351 (521)
Q Consensus 282 --~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~-------~~~-~~~vwi~y 351 (521)
+..+....++.+.|...|.+++...+. ..|. +.......|++..+ ..++.+.. ..| ....|..+
T Consensus 169 ~~~~~l~~~~~~~~~A~~~l~~~~~~~~~----~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~L 242 (296)
T PRK11189 169 ALWLYLAESKLDPKQAKENLKQRYEKLDK----EQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYL 242 (296)
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhhCCc----cccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 233445678899999999887753221 1333 23333446666554 34555443 222 46789999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~ 392 (521)
+......|+ ++.|+..|++|+...|.+ ..+.|..+++
T Consensus 243 g~~~~~~g~---~~~A~~~~~~Al~~~~~~-~~e~~~~~~e 279 (296)
T PRK11189 243 AKYYLSLGD---LDEAAALFKLALANNVYN-FVEHRYALLE 279 (296)
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHhCCch-HHHHHHHHHH
Confidence 999999998 999999999999988743 2234444444
No 48
>KOG1126|consensus
Probab=99.47 E-value=2.1e-12 Score=134.41 Aligned_cols=245 Identities=15% Similarity=-0.001 Sum_probs=196.8
Q ss_pred HHHHH----HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHH-H-HhhhccCCCC-ChhhHHHHH
Q psy8681 60 KAWKK----AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEE-D-ERKDEGDRDS-DTTYGMREL 117 (521)
Q Consensus 60 ~~W~~----~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~-~-eral~~~~~P-~~~~W~~~a 117 (521)
.-|.. ..+-.+++|+.|.++|+ .|-- .--+.+ +-+.. + .-.+ ...| ++..|..+|
T Consensus 352 t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-~v~Ls~Laq~Li--~~~~~sPesWca~G 428 (638)
T KOG1126|consen 352 TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-EVALSYLAQDLI--DTDPNSPESWCALG 428 (638)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-hHHHHHHHHHHH--hhCCCCcHHHHHhc
Confidence 44776 55666789999999998 4532 001111 12222 3 5667 7888 799999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHh
Q psy8681 118 VFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 118 ~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
+++.-+++.+.|++.|+||+.+.|. ..-.+.-++.-..... +++.|...|+.||.
T Consensus 429 NcfSLQkdh~~Aik~f~RAiQldp~---faYayTLlGhE~~~~e----------------------e~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 429 NCFSLQKDHDTAIKCFKRAIQLDPR---FAYAYTLLGHESIATE----------------------EFDKAMKSFRKALG 483 (638)
T ss_pred chhhhhhHHHHHHHHHHHhhccCCc---cchhhhhcCChhhhhH----------------------HHHhHHHHHHhhhc
Confidence 9999999999999999999998542 2223222222222222 89999999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.+|.+- ..|..++-...+.+..+.|+-. |++|+..||.+..+-.-++..+.+.|..++|..+|++|+...
T Consensus 484 ~~~rhY--nAwYGlG~vy~Kqek~e~Ae~~--------fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld 553 (638)
T KOG1126|consen 484 VDPRHY--NAWYGLGTVYLKQEKLEFAEFH--------FQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD 553 (638)
T ss_pred CCchhh--HHHHhhhhheeccchhhHHHHH--------HHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence 999987 7899999888889988888855 999999999999999999999999999999999999999999
Q ss_pred Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 278 PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 278 P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
|.+. .+.+...+++++.|...++..-..-|. ...++...+..+.+.|+.+.|..-|--|+...|.
T Consensus 554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~--es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQ--ESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc--hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 9877 467778899999999999998885553 3567888889999999999999999999998874
No 49
>PRK12370 invasion protein regulator; Provisional
Probab=99.46 E-value=2.1e-11 Score=132.61 Aligned_cols=239 Identities=10% Similarity=-0.047 Sum_probs=185.6
Q ss_pred ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc---------CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Q psy8681 90 KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN---------GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE 158 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~---------g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~ 158 (521)
+.++.|+.+ ++++ ...| +...|..++..+... ++++.|...+++|++..| .++.+|..++....
T Consensus 275 ~~~~~A~~~~~~Al--~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP---~~~~a~~~lg~~~~ 349 (553)
T PRK12370 275 YSLQQALKLLTQCV--NMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH---NNPQALGLLGLINT 349 (553)
T ss_pred HHHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHH
Confidence 356789999 9999 9999 688888888765532 347899999999999955 46788888888887
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
..| ++++|...|++|++..|.+. ..|..++......|+.+.|... |++
T Consensus 350 ~~g----------------------~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~G~~~eAi~~--------~~~ 397 (553)
T PRK12370 350 IHS----------------------EYIVGSLLFKQANLLSPISA--DIKYYYGWNLFMAGQLEEALQT--------INE 397 (553)
T ss_pred Hcc----------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH--------HHH
Confidence 777 99999999999999999987 6788888888899999999877 999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-PPTK-----FAELESLLGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
++..+|.++..+..++..+...|+.++|...+++++... |... ++.++..+|++++|+..+.++...++. ..
T Consensus 398 Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~--~~ 475 (553)
T PRK12370 398 CLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT--GL 475 (553)
T ss_pred HHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch--hH
Confidence 999999988776666666677899999999999999876 4333 566777899999999999998776553 23
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
..+......+...| +.|...++.+++.. +...-| ++.++.-.|+ .+.+.-+ .++.
T Consensus 476 ~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~---~~~~~~~-~~~~ 533 (553)
T PRK12370 476 IAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGE---AIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhh---hHHHHHH-HHhh
Confidence 45555555555666 58999888887754 222223 5666666676 5666555 4444
No 50
>KOG0547|consensus
Probab=99.46 E-value=2e-11 Score=122.80 Aligned_cols=250 Identities=18% Similarity=0.216 Sum_probs=197.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+.....-|.|..-.|+.-.|..-|..+|.+.| ....+++..+......+ ..+...
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~---~~~~lyI~~a~~y~d~~----------------------~~~~~~ 380 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDP---AFNSLYIKRAAAYADEN----------------------QSEKMW 380 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCc---ccchHHHHHHHHHhhhh----------------------ccHHHH
Confidence 44566677777788999999999999999965 34556777777766665 667788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
..|..|.+.+|.+. .+|.--+++.--.++.+.|..- |++++.++|.+.-.+.+++-++.+.+.++++...
T Consensus 381 ~~F~~A~~ldp~n~--dvYyHRgQm~flL~q~e~A~aD--------F~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~ 450 (606)
T KOG0547|consen 381 KDFNKAEDLDPENP--DVYYHRGQMRFLLQQYEEAIAD--------FQKAISLDPENAYAYIQLCCALYRQHKIAESMKT 450 (606)
T ss_pred HHHHHHHhcCCCCC--chhHhHHHHHHHHHHHHHHHHH--------HHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999987 5555555554455666666644 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC------CCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 270 YERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL------DMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 270 ~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~------~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
|+.++..+|... |++.....++++.|..-|..|+...|. ...+.+..+.+.+-. .+++..|..|+.++
T Consensus 451 Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA 529 (606)
T KOG0547|consen 451 FEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKA 529 (606)
T ss_pred HHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHH
Confidence 999999999876 788888999999999999999985443 222344454444443 38999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCH
Q psy8681 339 LERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 339 l~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~ 404 (521)
++..| +...++.+++++...|+ +++|..+|++++...... ..++.+|.--|...-+.
T Consensus 530 ~e~Dpkce~A~~tlaq~~lQ~~~---i~eAielFEksa~lArt~------~E~~~a~s~aeAAraq~ 587 (606)
T KOG0547|consen 530 IELDPKCEQAYETLAQFELQRGK---IDEAIELFEKSAQLARTE------SEMVHAYSLAEAARAQI 587 (606)
T ss_pred HccCchHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHhH------HHHHHHHHHHHHHhhhH
Confidence 99998 56688999999999998 999999999999887653 34666666444443433
No 51
>KOG0547|consensus
Probab=99.43 E-value=1.8e-11 Score=123.16 Aligned_cols=216 Identities=16% Similarity=0.165 Sum_probs=182.6
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
-.|++-.|... +.+| ..+| .+.+++..+.++....+.+.-.+.|..|..+.| .++++|..-+++..-.+
T Consensus 338 L~g~~~~a~~d~~~~I--~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp---~n~dvYyHRgQm~flL~---- 408 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAI--KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP---ENPDVYYHRGQMRFLLQ---- 408 (606)
T ss_pred hcCCchhhhhhHHHHH--hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC---CCCchhHhHHHHHHHHH----
Confidence 35677777777 8888 9999 678899999999999999999999999999955 56789999888887776
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|..=|++|+.+.|.+. -.|..+...+.+.+..+..... |+.++..+|+
T Consensus 409 ------------------q~e~A~aDF~Kai~L~pe~~--~~~iQl~~a~Yr~~k~~~~m~~--------Fee~kkkFP~ 460 (606)
T KOG0547|consen 409 ------------------QYEEAIADFQKAISLDPENA--YAYIQLCCALYRQHKIAESMKT--------FEEAKKKFPN 460 (606)
T ss_pred ------------------HHHHHHHHHHHHhhcChhhh--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHhCCC
Confidence 99999999999999999987 4455555555566666666655 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------H---H-HHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------F---A-ELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~---a-~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
.+.++..++..+...++++.|.+.|..|+.+-|... + + -+..-.+++.+|..++.+|++.+|. ...
T Consensus 461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpk--ce~ 538 (606)
T KOG0547|consen 461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPK--CEQ 538 (606)
T ss_pred CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCch--HHH
Confidence 999999999999999999999999999999988732 1 1 1122349999999999999998775 467
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+..++.++.+.|++++|+++|++++...
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999998764
No 52
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.2e-10 Score=110.54 Aligned_cols=195 Identities=20% Similarity=0.196 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHH
Q psy8681 147 EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED 226 (521)
Q Consensus 147 ~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~ 226 (521)
..++..++......+ +++.|...|++++...|.+. ..+..++.+....|+.+.+..
T Consensus 31 ~~~~~~la~~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~~~~~~A~~ 86 (234)
T TIGR02521 31 AKIRVQLALGYLEQG----------------------DLEVAKENLDKALEHDPDDY--LAYLALALYYQQLGELEKAED 86 (234)
T ss_pred HHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHH
Confidence 456666666666666 99999999999999998876 677788888888999998887
Q ss_pred HHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--chh-----HHHHHHHcCCHHHHHHHH
Q psy8681 227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP--PTK-----FAELESLLGDMERARAIY 299 (521)
Q Consensus 227 ~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P--~~~-----~a~le~~~g~~e~Ar~if 299 (521)
. |++++...|.+..+|..++.++...|++++|...|++++...+ ... ++......|+++.|...|
T Consensus 87 ~--------~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 87 S--------FRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred H--------HHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7 9999999999999999999999999999999999999998532 111 566778899999999999
Q ss_pred HHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 300 ELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 300 e~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
.+++...|.+ ...|..++.++...|+++.|..+|++++...| ++..|...+......|+ .+.|+.+.+.+...+
T Consensus 159 ~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~ 233 (234)
T TIGR02521 159 TRALQIDPQR--PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGD---VAAAQRYGAQLQKLF 233 (234)
T ss_pred HHHHHhCcCC--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh---HHHHHHHHHHHHhhC
Confidence 9999866543 46788888889999999999999999998865 56777777888888887 899998888776554
No 53
>KOG1173|consensus
Probab=99.42 E-value=3.3e-11 Score=123.35 Aligned_cols=249 Identities=11% Similarity=0.009 Sum_probs=193.0
Q ss_pred hcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHH
Q psy8681 69 KQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 69 ~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
..+.+.....+++ .|-+ ....|+...--.+ -++| ..+| ++-.|...|-++...|.+.+||.
T Consensus 256 ~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV--~~yP~~a~sW~aVg~YYl~i~k~seARr 333 (611)
T KOG1173|consen 256 YGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLV--DLYPSKALSWFAVGCYYLMIGKYSEARR 333 (611)
T ss_pred HcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHH--HhCCCCCcchhhHHHHHHHhcCcHHHHH
Confidence 3455666655555 4544 6667777778888 8999 9999 68899999999999999999999
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy8681 132 VYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY 211 (521)
Q Consensus 132 vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~ 211 (521)
.|.+|.... +.....|+.|+.-....+ +.++|...|-.|-+..|......+|.+
T Consensus 334 y~SKat~lD---~~fgpaWl~fghsfa~e~----------------------EhdQAmaaY~tAarl~~G~hlP~LYlg- 387 (611)
T KOG1173|consen 334 YFSKATTLD---PTFGPAWLAFGHSFAGEG----------------------EHDQAMAAYFTAARLMPGCHLPSLYLG- 387 (611)
T ss_pred HHHHHhhcC---ccccHHHHHHhHHhhhcc----------------------hHHHHHHHHHHHHHhccCCcchHHHHH-
Confidence 999999884 357889999998887777 999999999999999888764344443
Q ss_pred HHHHH-HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcC
Q psy8681 212 TIHEK-KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLG 290 (521)
Q Consensus 212 ~~~e~-~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g 290 (521)
++- +.++..-|+.. |.+|+.++|.++-+...++-+....+.+.+|...|+.++...+..
T Consensus 388 --mey~~t~n~kLAe~F--------f~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~---------- 447 (611)
T KOG1173|consen 388 --MEYMRTNNLKLAEKF--------FKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSV---------- 447 (611)
T ss_pred --HHHHHhccHHHHHHH--------HHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhc----------
Confidence 332 34566666665 888888888888888877777777777777777777766332210
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHH
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARR 369 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~ 369 (521)
....+ .-..+|...+...++.+.+..|+..|+++|..+| ++.++.+.|-.....|+ ++.|..
T Consensus 448 ------------~~e~~--~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgn---ld~Aid 510 (611)
T KOG1173|consen 448 ------------LNEKI--FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGN---LDKAID 510 (611)
T ss_pred ------------ccccc--chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcC---hHHHHH
Confidence 00001 0134788888999999999999999999999986 78899999999999999 999999
Q ss_pred HHHHHHHHhccch
Q psy8681 370 VFERANQALKASS 382 (521)
Q Consensus 370 vferAl~~~~~~~ 382 (521)
.|.+|+..-|++.
T Consensus 511 ~fhKaL~l~p~n~ 523 (611)
T KOG1173|consen 511 HFHKALALKPDNI 523 (611)
T ss_pred HHHHHHhcCCccH
Confidence 9999999999873
No 54
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.41 E-value=1.4e-12 Score=129.14 Aligned_cols=126 Identities=25% Similarity=0.365 Sum_probs=95.4
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCch
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ-GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~-g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~ 362 (521)
+..+.+.++.||.+|.+|+..... ...+|..++.+|... ++...|+.+|+++++.++ ++.+|+.|+.|+...++
T Consensus 10 ~~~r~~g~~~aR~vF~~a~~~~~~--~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d-- 85 (280)
T PF05843_consen 10 FMRRTEGIEAARKVFKRARKDKRC--TYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLND-- 85 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCS---THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT---
T ss_pred HHHHhCChHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCc--
Confidence 333444456666666666643332 346899999998885 555669999999999986 68999999999999988
Q ss_pred hhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 363 SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
.+.||.+|+|++..++... ....||..|++||..+|+.+.+.+|.+++-..+
T Consensus 86 -~~~aR~lfer~i~~l~~~~---~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 86 -INNARALFERAISSLPKEK---QSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHH---HCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhcCchh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999998877642 146799999999999999999999988775443
No 55
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=1.5e-10 Score=109.81 Aligned_cols=197 Identities=17% Similarity=0.136 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..+..++..+...|+++.|...|++++...| .+..++..++......| +++.|
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p---~~~~~~~~la~~~~~~~----------------------~~~~A 84 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDP---DDYLAYLALALYYQQLG----------------------ELEKA 84 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 367888999999999999999999999998754 35677777888777777 89999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--PNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
...|++++...|.+. ..+..++.+....|+.+.+... |++++... |.....|..++..+...|+.++|
T Consensus 85 ~~~~~~al~~~~~~~--~~~~~~~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 154 (234)
T TIGR02521 85 EDSFRRALTLNPNNG--DVLNNYGTFLCQQGKYEQAMQQ--------FEQAIEDPLYPQPARSLENAGLCALKAGDFDKA 154 (234)
T ss_pred HHHHHHHHhhCCCCH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHhccccccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999888765 6778888888888988888876 88888753 56678889999999999999999
Q ss_pred HHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 267 RETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 267 r~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
...|.+++...|... ++.+....|++++|...|++++...+. ....|...+.+....|+.+.|+.+.+.+...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 155 EKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQ--TAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 999999999888754 567788899999999999999886443 2445556778888899999999988877654
Q ss_pred C
Q psy8681 342 T 342 (521)
Q Consensus 342 ~ 342 (521)
.
T Consensus 233 ~ 233 (234)
T TIGR02521 233 F 233 (234)
T ss_pred C
Confidence 3
No 56
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.39 E-value=1.7e-10 Score=106.47 Aligned_cols=198 Identities=18% Similarity=0.128 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
...-+.++--+.+.|++..|+.-+++||+..| .+...|...+.+....| +.+.|.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DP---s~~~a~~~~A~~Yq~~G----------------------e~~~A~ 89 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDP---SYYLAHLVRAHYYQKLG----------------------ENDLAD 89 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcC----------------------ChhhHH
Confidence 35667777778888888888888888888844 46778888888888887 888888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--NPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
.-|++|+...|.+- .+.+.|+.|.-..|.++.+... |++|+.. -|..+++|.+.+-+-.+.|+.+.|+
T Consensus 90 e~YrkAlsl~p~~G--dVLNNYG~FLC~qg~~~eA~q~--------F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~ 159 (250)
T COG3063 90 ESYRKALSLAPNNG--DVLNNYGAFLCAQGRPEEAMQQ--------FERALADPAYGEPSDTLENLGLCALKAGQFDQAE 159 (250)
T ss_pred HHHHHHHhcCCCcc--chhhhhhHHHHhCCChHHHHHH--------HHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHH
Confidence 88888888888876 7888888888888888887755 8888775 3456788999998888999999999
Q ss_pred HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 268 ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
..|+|++...|+.. .+.++..-|++..|+..+++-....+. .-..+|.. |.++...|+-+.+-..=.++...+
T Consensus 160 ~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~-~A~sL~L~-iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 160 EYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGA-QAESLLLG-IRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccc-cHHHHHHH-HHHHHHhccHHHHHHHHHHHHHhC
Confidence 99999999888765 566777888899999888887775442 23466665 688888888777766555555566
Q ss_pred CC
Q psy8681 343 VH 344 (521)
Q Consensus 343 ~~ 344 (521)
|.
T Consensus 238 P~ 239 (250)
T COG3063 238 PY 239 (250)
T ss_pred CC
Confidence 64
No 57
>KOG0128|consensus
Probab=99.38 E-value=2.2e-10 Score=121.88 Aligned_cols=349 Identities=20% Similarity=0.202 Sum_probs=232.6
Q ss_pred CchhhhhhH-HHHHHHHHHhcCChhh---hhhhcC--CC--cH-----------HHhcccchhhHHH-HhhhccCCCCCh
Q psy8681 51 PNLKLLEKA-KAWKKAMEEKQGNKIG---EEGANK--EN--EE-----------EERDKERDREEED-ERKDEGDRDSDT 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~~~e~~~gn~~~---Ar~ife--~P--~~-----------e~r~g~~e~Ar~~-eral~~~~~P~~ 110 (521)
.++...|-+ -.|+-.+....|+++. ||..+. -| .. -...++...+..+ ++++ .-.-++
T Consensus 106 ~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal--~dy~~v 183 (881)
T KOG0128|consen 106 LAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKAL--GDYNSV 183 (881)
T ss_pred hcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHh--cccccc
Confidence 455555555 6665544455555544 555555 22 22 1223566777888 8998 777789
Q ss_pred hhHHHHHHHHHHcC-------ChhHHHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhhh--h-------hcccc----ch
Q psy8681 111 TYGMRELVFEEQNG-------FVSGARKVYERAVEFFGEENL-DEKLFIAFAKFEEGQR--E-------KYGDR----AG 169 (521)
Q Consensus 111 ~~W~~~a~~e~~~g-------~~~~Ar~vye~Al~~~~~~~~-~~~lw~~~a~~e~~~~--~-------~~~~~----~~ 169 (521)
.+|..++.|....+ +++..|.+|++||..++.+.. ...+|..|..|+...- . .+... +.
T Consensus 184 ~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D 263 (881)
T KOG0128|consen 184 PIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLD 263 (881)
T ss_pred hHHHHHHHHHHhccccccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccch
Confidence 99999999998764 478899999999998775443 3789999888876432 0 00000 00
Q ss_pred h----hH--------HHHHhhh---hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHH
Q psy8681 170 I----ED--------VIVSKRK---FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 170 ~----~~--------~~l~~~~---~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~ 234 (521)
. |. ++..... -.......-+..|+..++..|... ..|..|++|++..|+...+.-.
T Consensus 264 ~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~--q~~~~yidfe~~~G~p~ri~l~------- 334 (881)
T KOG0128|consen 264 EDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKD--QEWMSYIDFEKKSGDPVRIQLI------- 334 (881)
T ss_pred hhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHHHHHHhcCCchHHHHH-------
Confidence 0 00 0000000 011233445566777777777665 7999999999999998887755
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCchh--------------------HHHH--------
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLED-EGNADLIRETYERAIANIPPTK--------------------FAEL-------- 285 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~Ar~~~erAl~~~P~~~--------------------~a~l-------- 285 (521)
+++++...+.+.+.|..|+.++-. .+-...+..++-||+.++|... +..|
T Consensus 335 -~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~ 413 (881)
T KOG0128|consen 335 -EERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTV 413 (881)
T ss_pred -HHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHH
Confidence 999999999999999999988643 3445556677788888777654 0111
Q ss_pred ---------HHHc------CCHHHHHHHHHHHHcC------CCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHhcCC
Q psy8681 286 ---------ESLL------GDMERARAIYELAISQ------PRLDMPELVWKAYIDFEVG-QGERDKVRELHERLLERTV 343 (521)
Q Consensus 286 ---------e~~~------g~~e~Ar~ife~al~~------~~~~~~~~lw~~yi~~e~~-~g~~~~Ar~l~eral~~~~ 343 (521)
-... .+++.-++.|..|... ...+....+...|+.+|.. .++.+.+|.+....+....
T Consensus 414 ~l~~~~~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~ 493 (881)
T KOG0128|consen 414 ELHNDYLAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGG 493 (881)
T ss_pred HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCc
Confidence 1111 2344445556655431 1123334566666777665 5789999999998887653
Q ss_pred -CHH-HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH-HhhCchh
Q psy8681 344 -HVK-VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL-NSKLPRR 417 (521)
Q Consensus 344 -~~~-vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v-~~~~p~~ 417 (521)
... .|+.|+.++...|+ ...||.++++|+....++ ++-..+++.|..||+.+|+.+.+..+ ..++|+.
T Consensus 494 ~~iag~Wle~~~lE~~~g~---~~~~R~~~R~ay~~~~~~---~~~~ev~~~~~r~Ere~gtl~~~~~~~~~~~pr~ 564 (881)
T KOG0128|consen 494 GSIAGKWLEAINLEREYGD---GPSARKVLRKAYSQVVDP---EDALEVLEFFRRFEREYGTLESFDLCPEKVLPRV 564 (881)
T ss_pred chHHHHHHHHHhHHHHhCC---chhHHHHHHHHHhcCcCc---hhHHHHHHHHHHHHhccccHHHHhhhHHhhcchh
Confidence 444 99999999999998 999999999998765544 34568999999999999999886544 4445543
No 58
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.38 E-value=1.5e-11 Score=121.79 Aligned_cols=137 Identities=26% Similarity=0.480 Sum_probs=113.4
Q ss_pred HHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-CChhhHHH
Q psy8681 148 KLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-GDRAGIED 226 (521)
Q Consensus 148 ~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-G~~~~a~~ 226 (521)
-+|+.|.+|..+.+ .++.||.+|.+|+...+... .+|..++.+|..+ ++...|..
T Consensus 2 ~v~i~~m~~~~r~~----------------------g~~~aR~vF~~a~~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~ 57 (280)
T PF05843_consen 2 LVWIQYMRFMRRTE----------------------GIEAARKVFKRARKDKRCTY--HVYVAYALMEYYCNKDPKRARK 57 (280)
T ss_dssp HHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHCCCCS-T--HHHHHHHHHHHHTCS-HHHHHH
T ss_pred HHHHHHHHHHHHhC----------------------ChHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHhCCCHHHHHH
Confidence 37999999999988 89999999999996655445 7999999999985 45555776
Q ss_pred HHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 227 ~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
+ |+.+++..|.+.++|+.|+.++...|+.+.||.+|++++..+|....
T Consensus 58 I--------fe~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~------------------------ 105 (280)
T PF05843_consen 58 I--------FERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQ------------------------ 105 (280)
T ss_dssp H--------HHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHH------------------------
T ss_pred H--------HHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhH------------------------
Confidence 6 99999999999999999999999999999999999998887765310
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
...+|..|++||...|+++.++++++|+.+..|.
T Consensus 106 ----~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 106 ----SKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp ----CHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 2469999999999999999999999999998875
No 59
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.37 E-value=1.7e-09 Score=112.89 Aligned_cols=274 Identities=13% Similarity=0.124 Sum_probs=201.5
Q ss_pred ccchhhHHH-HhhhccCCCCCh-hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcccc
Q psy8681 90 KERDREEED-ERKDEGDRDSDT-TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P~~-~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~ 167 (521)
|+++.|+.. .+.. ...+++ -.++..+....+.|+++.|...|.+|.+..|+.. .......+.+....|
T Consensus 98 Gd~~~A~k~l~~~~--~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~--~~~~l~~a~l~l~~g------ 167 (398)
T PRK10747 98 GDYQQVEKLMTRNA--DHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ--LPVEITRVRIQLARN------ 167 (398)
T ss_pred CCHHHHHHHHHHHH--hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHCC------
Confidence 999999999 8876 543433 3455556676899999999999999998755311 112223356666676
Q ss_pred chhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
+++.|...++++++..|.+. .+....+....+.|+.+.+..+ +.+..+..+.+.
T Consensus 168 ----------------~~~~Al~~l~~~~~~~P~~~--~al~ll~~~~~~~gdw~~a~~~--------l~~l~k~~~~~~ 221 (398)
T PRK10747 168 ----------------ENHAARHGVDKLLEVAPRHP--EVLRLAEQAYIRTGAWSSLLDI--------LPSMAKAHVGDE 221 (398)
T ss_pred ----------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHHhHHHHHHH--------HHHHHHcCCCCH
Confidence 99999999999999999987 6777778888888999988876 777777766544
Q ss_pred HH--------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 248 DA--------WFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 248 ~~--------W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
.. |..+........+.+....+++......|++. |+......|+.+.|..+.+.++..++ +..+
T Consensus 222 ~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~---~~~l 298 (398)
T PRK10747 222 EHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY---DERL 298 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CHHH
Confidence 32 22222222222333333333333222223232 78889999999999999999999654 2456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEA 393 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~ 393 (521)
...|..+ ..++.+++....++.++.+| ++.+.+.++.++...++ +++|+..|++++...|++. .+..
T Consensus 299 ~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~---~~~A~~~le~al~~~P~~~-------~~~~ 366 (398)
T PRK10747 299 VLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE---WQEASLAFRAALKQRPDAY-------DYAW 366 (398)
T ss_pred HHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhcCCCHH-------HHHH
Confidence 6666654 45999999999999999998 68889999999999998 9999999999999988752 3445
Q ss_pred HHHHHHHcCCHHHHHHHHhhC
Q psy8681 394 WKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 394 ~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+..+....|+.+.+..+.++-
T Consensus 367 La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 367 LADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHcCCHHHHHHHHHHH
Confidence 677777899999887776543
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.36 E-value=5.2e-10 Score=111.97 Aligned_cols=228 Identities=14% Similarity=0.091 Sum_probs=170.5
Q ss_pred ccchhhHHH-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 90 KERDREEED-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+..+.++.. .+++ ...| + ...|...|..+...|+.+.|+..|.+++...| .++.+|..++......|
T Consensus 40 ~~~e~~i~~~~~~l--~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P---~~~~a~~~lg~~~~~~g-- 112 (296)
T PRK11189 40 LQQEVILARLNQIL--ASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP---DMADAYNYLGIYLTQAG-- 112 (296)
T ss_pred hHHHHHHHHHHHHH--ccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHCC--
Confidence 445566666 6777 5333 2 67799999999999999999999999999965 46889999999998888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|...|+++++..|... ..|...+......|..+.+... |++++..+
T Consensus 113 --------------------~~~~A~~~~~~Al~l~P~~~--~a~~~lg~~l~~~g~~~eA~~~--------~~~al~~~ 162 (296)
T PRK11189 113 --------------------NFDAAYEAFDSVLELDPTYN--YAYLNRGIALYYGGRYELAQDD--------LLAFYQDD 162 (296)
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhC
Confidence 99999999999999999887 6788888888888999999877 99999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHHcCCHHHHHHHHHHHHc---CCCC-C-CcHHHHH
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESLLGDMERARAIYELAIS---QPRL-D-MPELVWK 316 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~~g~~e~Ar~ife~al~---~~~~-~-~~~~lw~ 316 (521)
|.++.. ..+..+....++.++|...|.+++...++.. ++.....+|+...+ ..++.+.. ..+. . .....|.
T Consensus 163 P~~~~~-~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~ 240 (296)
T PRK11189 163 PNDPYR-ALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYF 240 (296)
T ss_pred CCCHHH-HHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 998731 1222234556789999999988776544333 34444556766544 34444443 1110 0 1235788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEM 356 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~ 356 (521)
..+.++...|++++|+..|++++...|+..+=..|+.++.
T Consensus 241 ~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 241 YLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 8888899999999999999999999875444444554443
No 61
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.36 E-value=2e-09 Score=120.36 Aligned_cols=302 Identities=10% Similarity=-0.005 Sum_probs=191.7
Q ss_pred HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~ 127 (521)
.+.-+.|++..|+..|. .|.+ ....|+.+.|+.+ ++++ ...| +.......+.++...|+++
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 56678899999998888 4653 4577899999999 9988 5544 5566666688898999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
+|..+|+++++..|+ ++.++..++......+ +.+.|...+++++...|... .
T Consensus 120 ~Aiely~kaL~~dP~---n~~~l~gLa~~y~~~~----------------------q~~eAl~~l~~l~~~dp~~~---~ 171 (822)
T PRK14574 120 QALALWQSSLKKDPT---NPDLISGMIMTQADAG----------------------RGGVVLKQATELAERDPTVQ---N 171 (822)
T ss_pred HHHHHHHHHHhhCCC---CHHHHHHHHHHHhhcC----------------------CHHHHHHHHHHhcccCcchH---H
Confidence 999999999998663 5677776666665555 66666666666666666532 2
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-----------------------
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD----------------------- 264 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~----------------------- 264 (521)
+...+.+....+....+... |++++..+|.+.+++..|...+...|-..
T Consensus 172 ~l~layL~~~~~~~~~AL~~--------~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~ 243 (822)
T PRK14574 172 YMTLSYLNRATDRNYDALQA--------SSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLER 243 (822)
T ss_pred HHHHHHHHHhcchHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHH
Confidence 23333333223333233333 66666666666666666665555444221
Q ss_pred -------------------------HHHHHHHHHHH---cCCchh-----------------------------------
Q psy8681 265 -------------------------LIRETYERAIA---NIPPTK----------------------------------- 281 (521)
Q Consensus 265 -------------------------~Ar~~~erAl~---~~P~~~----------------------------------- 281 (521)
.|..-++..+. ..|...
T Consensus 244 ~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~ 323 (822)
T PRK14574 244 DAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGY 323 (822)
T ss_pred HHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCC
Confidence 22233333333 223211
Q ss_pred ---------HHHHHHHcCCHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----
Q psy8681 282 ---------FAELESLLGDMERARAIYELAISQPRL----DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH---- 344 (521)
Q Consensus 282 ---------~a~le~~~g~~e~Ar~ife~al~~~~~----~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~---- 344 (521)
.+..+..++..++|..+|..++...+. +........+.-.+...+.+++|..+.++.....|.
T Consensus 324 ~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~ 403 (822)
T PRK14574 324 KMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGV 403 (822)
T ss_pred CCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEec
Confidence 455566788888888888888774311 001110122222234778888888888888774331
Q ss_pred --------HHHHHH----HHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Q psy8681 345 --------VKVWMN----YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNS 412 (521)
Q Consensus 345 --------~~vwi~----ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~ 412 (521)
.+-|.. .+....-.|+ ...|...++..+...|.++ .|+..+.+++..-|.+..++...+
T Consensus 404 ~~~~~~~pn~d~~~~~~l~a~~~~~~gd---l~~Ae~~le~l~~~aP~n~------~l~~~~A~v~~~Rg~p~~A~~~~k 474 (822)
T PRK14574 404 YGLPGKEPNDDWIEGQTLLVQSLVALND---LPTAQKKLEDLSSTAPANQ------NLRIALASIYLARDLPRKAEQELK 474 (822)
T ss_pred cCCCCCCCCccHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Confidence 122333 3555555676 8888888888888888874 577888888888888888777763
Q ss_pred h
Q psy8681 413 K 413 (521)
Q Consensus 413 ~ 413 (521)
.
T Consensus 475 ~ 475 (822)
T PRK14574 475 A 475 (822)
T ss_pred H
Confidence 3
No 62
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.34 E-value=1.9e-09 Score=112.88 Aligned_cols=281 Identities=17% Similarity=0.116 Sum_probs=214.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
....|+++.|+.. .++. ...|+ ...++..+....+.|+++.|...|.++.+..|+. ...+...++.+....+
T Consensus 94 a~~~g~~~~A~~~l~~~~--~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~--~l~~~~~~a~l~l~~~-- 167 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNA--DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND--NILVEIARTRILLAQN-- 167 (409)
T ss_pred HHhCCCHHHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC--chHHHHHHHHHHHHCC--
Confidence 5678999999999 9999 88884 6678888999999999999999999999886632 1235555677777777
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|+..++..++..|.+. .++..++.+....|+.+.+... +.+.++..
T Consensus 168 --------------------~~~~Al~~l~~l~~~~P~~~--~~l~ll~~~~~~~~d~~~a~~~--------l~~l~k~~ 217 (409)
T TIGR00540 168 --------------------ELHAARHGVDKLLEMAPRHK--EVLKLAEEAYIRSGAWQALDDI--------IDNMAKAG 217 (409)
T ss_pred --------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHcC
Confidence 99999999999999999987 7888899999999999988876 88888765
Q ss_pred CCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCch----h-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 244 PNNYDAWF----DYLRLLEDEGNADLIRETYERAIANIPPT----K-----FAELESLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 244 P~~~~~W~----~y~~~~~~~g~~~~Ar~~~erAl~~~P~~----~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
+.+..... ....-....+..+.....+..+....|.. . ++.+....|+.+.|..+++.+++..|.+.
T Consensus 218 ~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~ 297 (409)
T TIGR00540 218 LFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDR 297 (409)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcc
Confidence 44433321 11111122333344556777788778843 2 77888999999999999999999655432
Q ss_pred cHH--HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CH--HHHHHHHHHHHHcCCchhhHHHHHHHH--HHHHHhccchh
Q psy8681 311 PEL--VWKAYIDFEVGQGERDKVRELHERLLERTV-HV--KVWMNYAQFEMSSGDEDSVSLARRVFE--RANQALKASSE 383 (521)
Q Consensus 311 ~~~--lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~--~vwi~ya~~e~~~g~~~~~~~AR~vfe--rAl~~~~~~~~ 383 (521)
... +...++. ...++...+..+++++++..| ++ .+..+++.++...|+ +++|+..|+ .++...|++.
T Consensus 298 ~~~~~~l~~~~~--l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~---~~~A~~~le~a~a~~~~p~~~- 371 (409)
T TIGR00540 298 AISLPLCLPIPR--LKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGE---FIEAADAFKNVAACKEQLDAN- 371 (409)
T ss_pred cchhHHHHHhhh--cCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHccc---HHHHHHHHHHhHHhhcCCCHH-
Confidence 211 3333332 335788999999999999987 56 677899999999998 999999999 5777777642
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 384 KEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.+..+..+-...|+.+.+.++.++.
T Consensus 372 ------~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 372 ------DLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3446677777899999998887653
No 63
>KOG1155|consensus
Probab=99.34 E-value=7.2e-09 Score=104.11 Aligned_cols=308 Identities=12% Similarity=0.045 Sum_probs=203.4
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc------cHHHHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL------DEKLFIAFAKFE 157 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~------~~~lw~~~a~~e 157 (521)
+...|....|+.. -..| ...| .-..|+.++.+.. +.+.+-. .+.-+|.+.. -..+|..+...+
T Consensus 174 ~k~~~~~s~A~~sfv~~v--~~~P~~W~AWleL~~lit---~~e~~~~----l~~~l~~~~h~M~~~F~~~a~~el~q~~ 244 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVV--NRYPWFWSAWLELSELIT---DIEILSI----LVVGLPSDMHWMKKFFLKKAYQELHQHE 244 (559)
T ss_pred HHhhchHHHHHHHHHHHH--hcCCcchHHHHHHHHhhc---hHHHHHH----HHhcCcccchHHHHHHHHHHHHHHHHHH
Confidence 4456777778888 7888 7778 6677777766653 2222221 1111121100 112222232222
Q ss_pred Hhhhhhcccc----chh---hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh----HHH
Q psy8681 158 EGQREKYGDR----AGI---EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG----IED 226 (521)
Q Consensus 158 ~~~~~~~~~~----~~~---~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~----a~~ 226 (521)
...+ ++... +.. .....+...+...+++.|..+|+..++.+|-.. .-...|.+..-...+... |..
T Consensus 245 e~~~-k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl--~dmdlySN~LYv~~~~skLs~LA~~ 321 (559)
T KOG1155|consen 245 EALQ-KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRL--DDMDLYSNVLYVKNDKSKLSYLAQN 321 (559)
T ss_pred HHHH-HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcc--hhHHHHhHHHHHHhhhHHHHHHHHH
Confidence 2222 11100 000 111122334566799999999999999988643 111112111111111000 011
Q ss_pred HH----------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---
Q psy8681 227 VI----------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--- 281 (521)
Q Consensus 227 ~i----------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--- 281 (521)
+. -.|+...|++||++||....+|...|.-+....+...|...|.+|+..+|.+.
T Consensus 322 v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAW 401 (559)
T KOG1155|consen 322 VSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAW 401 (559)
T ss_pred HHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHH
Confidence 10 12455679999999999999999999999999999999999999999999876
Q ss_pred --HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 282 --FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 --~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
++..+..++-..=|.-.|++|+...|.| ..+|.++++.+.+.++.++|++.|.+++...+ ...+...+|......
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnD--sRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPND--SRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 5677888888899999999999977765 68999999999999999999999999999875 578889999999998
Q ss_pred CCchhhHHHHHHHHHHHHHhccchhhH-HHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 359 GDEDSVSLARRVFERANQALKASSEKE-ERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~~~~~~~-~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
++ ..+|-..|++-++..-..+... +-.........++.+.++.+.+..-
T Consensus 480 ~d---~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 480 KD---LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred Hh---HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 88 9999999999998652221111 1122222256677788887766553
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.32 E-value=6.4e-09 Score=116.36 Aligned_cols=322 Identities=9% Similarity=-0.058 Sum_probs=214.6
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC---CCcH------------HHhcccchhhHHH-HhhhccCCCC-Ch
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK---ENEE------------EERDKERDREEED-ERKDEGDRDS-DT 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife---~P~~------------e~r~g~~e~Ar~~-eral~~~~~P-~~ 110 (521)
+++...|.. ..... .+....|+.+.|+.+++ .|.+ ....|+++.|+.+ ++++ ...| ++
T Consensus 59 qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL--~~dP~n~ 136 (822)
T PRK14574 59 EESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSL--KKDPTNP 136 (822)
T ss_pred HHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--hhCCCCH
Confidence 344455554 23223 45567799999999998 4433 4567999999999 9999 9999 78
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.++..++..+...++.++|...+++++...|. . ..+...+.+....+ ....|..
T Consensus 137 ~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~---~-~~~l~layL~~~~~----------------------~~~~AL~ 190 (822)
T PRK14574 137 DLISGMIMTQADAGRGGVVLKQATELAERDPT---V-QNYMTLSYLNRATD----------------------RNYDALQ 190 (822)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc---h-HHHHHHHHHHHhcc----------------------hHHHHHH
Confidence 99999999999999999999999999988663 1 12233333333333 4545888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH----------------------------------------Hh
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI----------------------------------------VS 230 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i----------------------------------------~~ 230 (521)
.|+++++..|.+. .++..|.......|-..-+.... ..
T Consensus 191 ~~ekll~~~P~n~--e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 191 ASSEAVRLAPTSE--EVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHhCCCCH--HHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 8888888888766 55565555555555432222211 00
Q ss_pred hHHHHHHHHHh---hCCC---------------------------------------CHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 231 KRKFQYEEEVN---SNPN---------------------------------------NYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 231 krr~~ye~al~---~~P~---------------------------------------~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
+....|+..+. ..|. -.-+--.++..+...+.+++|..
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 01122333332 1121 11123334555666778899999
Q ss_pred HHHHHHHcCCc------hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC---------CCc----HHHHHHHHHHHHh
Q psy8681 269 TYERAIANIPP------TK-----FAELESLLGDMERARAIYELAISQPRL---------DMP----ELVWKAYIDFEVG 324 (521)
Q Consensus 269 ~~erAl~~~P~------~~-----~a~le~~~g~~e~Ar~ife~al~~~~~---------~~~----~~lw~~yi~~e~~ 324 (521)
+|..++...|+ .. +..-+...|.++.|..+.+.....+|. ..+ .......+....-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 99999886532 11 122234579999999999999984441 011 2233333555677
Q ss_pred cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCC
Q psy8681 325 QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 325 ~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~ 403 (521)
.|++..|..+++.++...| ++.+++.+|..+...|. +.+|..+++.++...|.+.. -+........ .-|+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~---p~~A~~~~k~a~~l~P~~~~--~~~~~~~~al----~l~e 499 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDL---PRKAEQELKAVESLAPRSLI--LERAQAETAM----ALQE 499 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhhCCccHH--HHHHHHHHHH----hhhh
Confidence 8999999999999999998 79999999999999999 99999999999988887632 2223333333 2376
Q ss_pred HHHHHHHH
Q psy8681 404 DESRAKLN 411 (521)
Q Consensus 404 ~~~~~~v~ 411 (521)
..+++.+.
T Consensus 500 ~~~A~~~~ 507 (822)
T PRK14574 500 WHQMELLT 507 (822)
T ss_pred HHHHHHHH
Confidence 66665554
No 65
>KOG1125|consensus
Probab=99.29 E-value=3.1e-10 Score=116.83 Aligned_cols=217 Identities=15% Similarity=0.167 Sum_probs=176.8
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
.++..|.+..|.-+|+.|+...|.+. ..|..++......++-..++.. +++|++++|+|..+-..++..+
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~ha--eAW~~LG~~qaENE~E~~ai~A--------L~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHA--EAWQKLGITQAENENEQNAISA--------LRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHH--HHHHHhhhHhhhccchHHHHHH--------HHHHHhcCCccHHHHHHHHHHH
Confidence 34556789999999999999999988 8999998887777777677655 9999999999999999998888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh------------------------------------------------HHHHHHHc
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK------------------------------------------------FAELESLL 289 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~------------------------------------------------~a~le~~~ 289 (521)
...|.-..|...|..=|...|+.. ++-|+...
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 777766666666666555443211 66778888
Q ss_pred CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHH
Q psy8681 290 GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLAR 368 (521)
Q Consensus 290 g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR 368 (521)
|++++|..+|+.|+...|.+ ..+|+.++..+.......+|+..|.|||++.| .+.+|.+++-.++..|. +.+|.
T Consensus 444 ~efdraiDcf~~AL~v~Pnd--~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~---ykEA~ 518 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQVKPND--YLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGA---YKEAV 518 (579)
T ss_pred hHHHHHHHHHHHHHhcCCch--HHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhh---HHHHH
Confidence 99999999999999977754 78999999999999999999999999999998 79999999999999998 99999
Q ss_pred HHHHHHHHHhccc----hhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 369 RVFERANQALKAS----SEKEERVMLLEAWKEFEAQHGDDESRAK 409 (521)
Q Consensus 369 ~vferAl~~~~~~----~~~~~~~~l~~~~~~fE~~~G~~~~~~~ 409 (521)
..|-.||...+.+ ........+|..++-+-...|..+.+..
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9999999987662 1111124688888877777777664433
No 66
>KOG2076|consensus
Probab=99.28 E-value=5.5e-09 Score=112.45 Aligned_cols=260 Identities=18% Similarity=0.214 Sum_probs=208.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+...+.-|+...-.|+++.|..++..+|...| .....|..++...+..| +.+.|.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp---~~~~ay~tL~~IyEqrG----------------------d~eK~l 193 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDP---RNPIAYYTLGEIYEQRG----------------------DIEKAL 193 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc---cchhhHHHHHHHHHHcc----------------------cHHHHH
Confidence 55677778888888999999999999999854 46788999999999998 889888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
...-.|--..|.+. .+|..+..+-.+.|+...|.-+ |.++|..+|.+....+..+.++.+.|+...|...
T Consensus 194 ~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~~c--------y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~ 263 (895)
T KOG2076|consen 194 NFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQARYC--------YSRAIQANPSNWELIYERSSLYQKTGDLKRAMET 263 (895)
T ss_pred HHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHHHH--------HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHH
Confidence 77777777789888 9999999999999999988766 9999999999999999999999999999999999
Q ss_pred HHHHHHcCCchh----------HHHHHHHcCCHHHHHHHHHHHHcCC--C------------------------------
Q psy8681 270 YERAIANIPPTK----------FAELESLLGDMERARAIYELAISQP--R------------------------------ 307 (521)
Q Consensus 270 ~erAl~~~P~~~----------~a~le~~~g~~e~Ar~ife~al~~~--~------------------------------ 307 (521)
|.+++..+|+.. ++..+...++-++|.++++.++... .
T Consensus 264 f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~ 343 (895)
T KOG2076|consen 264 FLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDR 343 (895)
T ss_pred HHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHh
Confidence 999999999655 3444555555577777766665310 0
Q ss_pred ------------------------------------------------------------------CCCcHHHHHHHHHH
Q psy8681 308 ------------------------------------------------------------------LDMPELVWKAYIDF 321 (521)
Q Consensus 308 ------------------------------------------------------------------~~~~~~lw~~yi~~ 321 (521)
......++....+.
T Consensus 344 ~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~a 423 (895)
T KOG2076|consen 344 NRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADA 423 (895)
T ss_pred ccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHH
Confidence 00012344444455
Q ss_pred HHhcCChHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHH
Q psy8681 322 EVGQGERDKVRELHERLLERTV--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEA 399 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~ 399 (521)
+...|++..|..+|..++...+ +..||...|.++...|. .+.|...|++++...|.+-+ .|..|-.-+.
T Consensus 424 l~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e---~e~A~e~y~kvl~~~p~~~D--~Ri~Lasl~~---- 494 (895)
T KOG2076|consen 424 LTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE---YEEAIEFYEKVLILAPDNLD--ARITLASLYQ---- 494 (895)
T ss_pred HHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh---HHHHHHHHHHHHhcCCCchh--hhhhHHHHHH----
Confidence 6678899999999999988764 57799999999999998 99999999999999998854 4455544444
Q ss_pred HcCCHHHHHHHHhh
Q psy8681 400 QHGDDESRAKLNSK 413 (521)
Q Consensus 400 ~~G~~~~~~~v~~~ 413 (521)
+.|+.+.+-.++..
T Consensus 495 ~~g~~EkalEtL~~ 508 (895)
T KOG2076|consen 495 QLGNHEKALETLEQ 508 (895)
T ss_pred hcCCHHHHHHHHhc
Confidence 78998866665544
No 67
>KOG1129|consensus
Probab=99.23 E-value=9.8e-10 Score=105.76 Aligned_cols=227 Identities=16% Similarity=0.143 Sum_probs=150.9
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 115 RELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 115 ~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
.+++.+.+.|-+.+|.+-|..+|+.+| .++.+.-+.+...+.. ...+|..+|..
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~----~~dTfllLskvY~rid----------------------QP~~AL~~~~~ 281 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP----HPDTFLLLSKVYQRID----------------------QPERALLVIGE 281 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC----chhHHHHHHHHHHHhc----------------------cHHHHHHHHhh
Confidence 456666666666667777766666654 2344555555555555 66666666666
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
.|+.+|.+. .+....+......++.+.+... |...++.+|.+..+--..+.-+.-.++++-|...|.|.+
T Consensus 282 gld~fP~~V--T~l~g~ARi~eam~~~~~a~~l--------Yk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiL 351 (478)
T KOG1129|consen 282 GLDSFPFDV--TYLLGQARIHEAMEQQEDALQL--------YKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRIL 351 (478)
T ss_pred hhhcCCchh--hhhhhhHHHHHHHHhHHHHHHH--------HHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHH
Confidence 666666665 4555555555556666666554 666666666666655555555555566666666666666
Q ss_pred HcCCchh--HH---HHHHHcCCHHHHHHHHHHHHcCCC-CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHH
Q psy8681 275 ANIPPTK--FA---ELESLLGDMERARAIYELAISQPR-LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKV 347 (521)
Q Consensus 275 ~~~P~~~--~a---~le~~~g~~e~Ar~ife~al~~~~-~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~v 347 (521)
+.--.+. |. -...--+.++-+...|++|+.... ......+|..........|++..|...|+-+|...+ |.+.
T Consensus 352 qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ea 431 (478)
T KOG1129|consen 352 QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEA 431 (478)
T ss_pred HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHH
Confidence 6432222 21 112233566666677777666211 122467998888888888999999999999998775 7889
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 348 WMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 348 wi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..+++.+....|+ ++.||+++..|-..+|.
T Consensus 432 lnNLavL~~r~G~---i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 432 LNNLAVLAARSGD---ILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHhHHHHHhhcCc---hHHHHHHHHHhhhhCcc
Confidence 9999999998888 99999999999888875
No 68
>KOG2002|consensus
Probab=99.21 E-value=2.9e-08 Score=107.72 Aligned_cols=339 Identities=13% Similarity=0.111 Sum_probs=237.9
Q ss_pred HHHhcCCh--hhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-C-hhhHHHHHHHHHHcCC
Q psy8681 66 MEEKQGNK--IGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-D-TTYGMRELVFEEQNGF 125 (521)
Q Consensus 66 ~e~~~gn~--~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~-~~~W~~~a~~e~~~g~ 125 (521)
++...|.. +.|-+.|. .|++ ....|+|-.|..+ .+++ ...| . ++.-+..+....+.|.
T Consensus 137 ~~l~~~~~~~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al--~inp~~~aD~rIgig~Cf~kl~~ 214 (1018)
T KOG2002|consen 137 FLLLEGDKSMDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKAL--RINPACKADVRIGIGHCFWKLGM 214 (1018)
T ss_pred hhhhcCCccHHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHH--hcCcccCCCccchhhhHHHhccc
Confidence 33444444 67777776 5776 5667899999999 9998 8888 2 6677777777788899
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh--hccccch-------------hhHHHHHhhhhhhhhHHHHHH
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE--KYGDRAG-------------IEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~--~~~~~~~-------------~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.+.|+..|++|+.+.| .+..+.+.++.+...+.. .+....+ +...+|...++-.+++..+..
T Consensus 215 ~~~a~~a~~ralqLdp---~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~ 291 (1018)
T KOG2002|consen 215 SEKALLAFERALQLDP---TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWH 291 (1018)
T ss_pred hhhHHHHHHHHHhcCh---hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHH
Confidence 9999999999999955 567777887776665441 1111111 122334444566679999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q psy8681 191 IYKYALDHIPK-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN-YDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 191 iy~~aL~~~P~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~-~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
++..++...-. .....-+...+..+...|+++.|... |.+++..+|.+ .-..+.+++.+...|+...+..
T Consensus 292 la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~y--------Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 292 LAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKY--------YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHH--------HHHHHccCCCCccccccchhHHHHHhchHHHHHH
Confidence 99999876311 11224577778888899999999877 99999999988 6678899999999999999999
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcC----CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 269 TYERAIANIPPTK-----FAELESLLG----DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g----~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
.|++.+...|+.. ++.++...+ ..+.|..+..+++...|.+ ...|.....++ ..++.-.+..+|.+|+
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d--~~a~l~laql~-e~~d~~~sL~~~~~A~ 440 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD--SEAWLELAQLL-EQTDPWASLDAYGNAL 440 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc--HHHHHHHHHHH-HhcChHHHHHHHHHHH
Confidence 9999999999876 555655554 6688888899988876543 57888766555 5677777799999998
Q ss_pred hcC-----CC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHH--HHH--HHHHHHHHHHcCCH----H
Q psy8681 340 ERT-----VH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEER--VML--LEAWKEFEAQHGDD----E 405 (521)
Q Consensus 340 ~~~-----~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~--~~l--~~~~~~fE~~~G~~----~ 405 (521)
..- +- +++-.+.|......|+ +..|+..|.+|+..+....++++. ..| ---...+.+..++. +
T Consensus 441 d~L~~~~~~ip~E~LNNvaslhf~~g~---~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 441 DILESKGKQIPPEVLNNVASLHFRLGN---IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHcCCCCCHHHHHhHHHHHHHhcC---hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 541 23 4455568888888898 999999999999884321111111 111 11112222233332 2
Q ss_pred HHHHHHhhCchhhhhhhc
Q psy8681 406 SRAKLNSKLPRRAKKRVK 423 (521)
Q Consensus 406 ~~~~v~~~~p~~v~krr~ 423 (521)
..+.|.+..|..|..++.
T Consensus 518 ~Yk~Ilkehp~YId~ylR 535 (1018)
T KOG2002|consen 518 MYKSILKEHPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHHCchhHHHHHH
Confidence 346677778877755543
No 69
>KOG1174|consensus
Probab=99.21 E-value=1.8e-08 Score=99.84 Aligned_cols=273 Identities=10% Similarity=0.021 Sum_probs=199.1
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHH-------
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS------- 176 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~------- 176 (521)
...| ++.+...+++++...|+.+.|...|+++....|.. ...-.-|+-+....| .+.+...+-...++
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~---i~~MD~Ya~LL~~eg-~~e~~~~L~~~Lf~~~~~ta~ 301 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDN---VEAMDLYAVLLGQEG-GCEQDSALMDYLFAKVKYTAS 301 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhh---hhhHHHHHHHHHhcc-CHhhHHHHHHHHHhhhhcchh
Confidence 4567 68888888888888888888888888888774422 222223333333322 11111111111110
Q ss_pred ------hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 177 ------KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 177 ------~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
...+..+++.+|..+-+++++..|.+. ..+..-+.+....|..+.|.-. |..|...-|...+.+
T Consensus 302 ~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~--~alilKG~lL~~~~R~~~A~Ia--------FR~Aq~Lap~rL~~Y 371 (564)
T KOG1174|consen 302 HWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH--EALILKGRLLIALERHTQAVIA--------FRTAQMLAPYRLEIY 371 (564)
T ss_pred hhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc--hHHHhccHHHHhccchHHHHHH--------HHHHHhcchhhHHHH
Confidence 012334689999999999999999987 5666667777788887776644 999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHH-----HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Q psy8681 251 FDYLRLLEDEGNADLIRETYERAIANIPPTK--FAEL-----ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEV 323 (521)
Q Consensus 251 ~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~l-----e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~ 323 (521)
..++..+...|.+.+|.-.-..++..+|.+. +.-+ ...----+.|...+++++...|.- ...-.....+..
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y--~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY--TPAVNLIAELCQ 449 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc--HHHHHHHHHHHH
Confidence 9999999999999999999888888888765 1111 011123578999999999976542 223344566777
Q ss_pred hcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcC
Q psy8681 324 GQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G 402 (521)
..|.+..+..++++.|..+++..+...++++....+. +..|.+.|..|+...|++. .-++....+|++-.
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne---~Q~am~~y~~ALr~dP~~~------~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNE---PQKAMEYYYKALRQDPKSK------RTLRGLRLLEKSDD 519 (564)
T ss_pred hhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhh---HHHHHHHHHHHHhcCccch------HHHHHHHHHHhccC
Confidence 8899999999999999999999999999999999988 9999999999999999873 35566666666543
No 70
>KOG2396|consensus
Probab=99.20 E-value=8.2e-09 Score=104.74 Aligned_cols=119 Identities=16% Similarity=0.236 Sum_probs=96.6
Q ss_pred CCCCChhhHHHHHHHHHHcC-----------------C---hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 105 DRDSDTTYGMRELVFEEQNG-----------------F---VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 105 ~~~P~~~~W~~~a~~e~~~g-----------------~---~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
..+++..-++.|+++|.... + ..+...+|.+|+..++ .+..+|..|+.|..+.+
T Consensus 46 rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~rf~---~D~~lW~~yi~f~kk~~--- 119 (568)
T KOG2396|consen 46 RRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNRFN---GDVKLWLSYIAFCKKKK--- 119 (568)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhc---
Confidence 55566777888888887542 1 2356778999998875 37899999999998887
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCC-hhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD-RAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~-~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.+.+...||..+|...|.+. .+|...+.++-..+. .+++.++ |.++|..|
T Consensus 120 -------------------~~~~v~ki~~~~l~~Hp~~~--dLWI~aA~wefe~n~ni~saRal--------flrgLR~n 170 (568)
T KOG2396|consen 120 -------------------TYGEVKKIFAAMLAKHPNNP--DLWIYAAKWEFEINLNIESARAL--------FLRGLRFN 170 (568)
T ss_pred -------------------chhHHHHHHHHHHHhCCCCc--hhHHhhhhhHHhhccchHHHHHH--------HHHHhhcC
Confidence 68889999999999999988 899988888776664 5666555 99999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy8681 244 PNNYDAWFDYLRLLE 258 (521)
Q Consensus 244 P~~~~~W~~y~~~~~ 258 (521)
|.++.+|..|.+++.
T Consensus 171 pdsp~Lw~eyfrmEL 185 (568)
T KOG2396|consen 171 PDSPKLWKEYFRMEL 185 (568)
T ss_pred CCChHHHHHHHHHHH
Confidence 999999999998875
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.19 E-value=9.4e-08 Score=92.35 Aligned_cols=273 Identities=12% Similarity=0.073 Sum_probs=199.7
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH--HHHHHHHHHHhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK--LFIAFAKFEEGQR 161 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~--lw~~~a~~e~~~~ 161 (521)
.+=.++.+.|..+ -.++ ...| +.++-+.+|+++.+.|.+|+|+.+.+..+.. |+-..... +...+++=....
T Consensus 45 fLLs~Q~dKAvdlF~e~l--~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~a- 120 (389)
T COG2956 45 FLLSNQPDKAVDLFLEML--QEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAA- 120 (389)
T ss_pred HHhhcCcchHHHHHHHHH--hcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHh-
Confidence 3334678899999 8888 8889 7899999999999999999999999888775 32111111 222233322333
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
|-+++|..+|....+. |.. .......++.++....+.+.|.++ -++.++
T Consensus 121 ---------------------Gl~DRAE~~f~~L~de-~ef-a~~AlqqLl~IYQ~treW~KAId~--------A~~L~k 169 (389)
T COG2956 121 ---------------------GLLDRAEDIFNQLVDE-GEF-AEGALQQLLNIYQATREWEKAIDV--------AERLVK 169 (389)
T ss_pred ---------------------hhhhHHHHHHHHHhcc-hhh-hHHHHHHHHHHHHHhhHHHHHHHH--------HHHHHH
Confidence 3889999999887763 222 124445555555555566666655 556666
Q ss_pred hCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc
Q psy8681 242 SNPNNY-----DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMP 311 (521)
Q Consensus 242 ~~P~~~-----~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~ 311 (521)
..|..+ ..+..++..+....+++.|+.++.+|++.+|.+. .+.++...|+++.|...++.+++++|-- -
T Consensus 170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~y-l 248 (389)
T COG2956 170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEY-L 248 (389)
T ss_pred cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHH-H
Confidence 666543 3566666667777899999999999999999877 7889999999999999999999976531 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLL 391 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~ 391 (521)
+.+.......+...|........+.++.+.++.+.+-+.++.+...... ++.|...+.+-+..-|. ...+
T Consensus 249 ~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G---~~~Aq~~l~~Ql~r~Pt-------~~gf 318 (389)
T COG2956 249 SEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEG---IDAAQAYLTRQLRRKPT-------MRGF 318 (389)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhC---hHHHHHHHHHHHhhCCc-------HHHH
Confidence 3455555566678999999999999999999888877777777766655 89999999999988886 3456
Q ss_pred HHHHHHHHHcCCH
Q psy8681 392 EAWKEFEAQHGDD 404 (521)
Q Consensus 392 ~~~~~fE~~~G~~ 404 (521)
-.++++.-.-++.
T Consensus 319 ~rl~~~~l~daee 331 (389)
T COG2956 319 HRLMDYHLADAEE 331 (389)
T ss_pred HHHHHhhhccccc
Confidence 6666665544443
No 72
>KOG1125|consensus
Probab=99.17 E-value=3e-09 Score=109.63 Aligned_cols=230 Identities=14% Similarity=0.135 Sum_probs=168.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.++.|.+.+|.-. +.+| ...| +.+.|..+|......++-..|+..+.+|+++.| .+-.+..+++--....+ .
T Consensus 295 lm~nG~L~~A~LafEAAV--kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP---~NleaLmaLAVSytNeg-~ 368 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAV--KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDP---TNLEALMALAVSYTNEG-L 368 (579)
T ss_pred HHhcCCchHHHHHHHHHH--hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC---ccHHHHHHHHHHHhhhh-h
Confidence 8899999999999 9999 9999 799999999999999999999999999999965 45556666554443333 0
Q ss_pred ccccchhhHHHHHhh--------------------hhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh
Q psy8681 164 YGDRAGIEDVIVSKR--------------------KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~--------------------~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~ 223 (521)
-..++...+.|+... ......+.....+|-.|....|......+...++-+....|+++.
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 011112222222100 011124556667777777777854444899999988888999999
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHH
Q psy8681 224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAI 298 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~i 298 (521)
+.++ |+.||...|+|+.+|..||..+....+..+|+..|.||+++-|... ++--...+|.+.+|...
T Consensus 449 aiDc--------f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~h 520 (579)
T KOG1125|consen 449 AVDC--------FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKH 520 (579)
T ss_pred HHHH--------HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHH
Confidence 9988 9999999999999999999999998899999999999999999744 34445667888888888
Q ss_pred HHHHHcCCCC-----CC---cHHHHHHHHHHHHhcCChH
Q psy8681 299 YELAISQPRL-----DM---PELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 299 fe~al~~~~~-----~~---~~~lw~~yi~~e~~~g~~~ 329 (521)
|-.||...+. .. ...+|..+-.++.-.+..+
T Consensus 521 lL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 521 LLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred HHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 8887763211 10 2457766655555555544
No 73
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=99.15 E-value=6e-09 Score=104.17 Aligned_cols=273 Identities=18% Similarity=0.269 Sum_probs=196.9
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..+| +...|..++..+...|..+..|++|++....+| .-+.+|..|..-+...+
T Consensus 36 kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp---~~~~aw~ly~s~ELA~~---------------------- 90 (660)
T COG5107 36 KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFP---IMEHAWRLYMSGELARK---------------------- 90 (660)
T ss_pred hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCc---cccHHHHHHhcchhhhh----------------------
Confidence 6789 799999999999999999999999999998776 35789999998888887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh---hCCCCHHHHHHHHHHHHH-
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN---SNPNNYDAWFDYLRLLED- 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~---~~P~~~~~W~~y~~~~~~- 259 (521)
++.....+|-++|...- ...+|..|+.+-++.++.-.-+.- .+....|+-.+. ..|.+...|..|+.++..
T Consensus 91 df~svE~lf~rCL~k~l---~ldLW~lYl~YIRr~n~~~tGq~r--~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~ 165 (660)
T COG5107 91 DFRSVESLFGRCLKKSL---NLDLWMLYLEYIRRVNNLITGQKR--FKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYI 165 (660)
T ss_pred hHHHHHHHHHHHHhhhc---cHhHHHHHHHHHHhhCcccccchh--hhhHHHHHHHHhcccccccccchHHHHHHHHHhc
Confidence 89999999999987632 348999999988766532211100 001123554444 589999999999999864
Q ss_pred --------cCCHHHHHHHHHHHHHcCCchh-------HHHHHHHc-------------CCHHHHHHHHHHHHcC------
Q psy8681 260 --------EGNADLIRETYERAIANIPPTK-------FAELESLL-------------GDMERARAIYELAISQ------ 305 (521)
Q Consensus 260 --------~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~-------------g~~e~Ar~ife~al~~------ 305 (521)
+.+++.+|..|.||+.. |-.. |-.+|... -.+-.||+.|+.....
T Consensus 166 ~~~~kwEeQqrid~iR~~Y~ral~t-P~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v 244 (660)
T COG5107 166 EELGKWEEQQRIDKIRNGYMRALQT-PMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSV 244 (660)
T ss_pred cccccHHHHHHHHHHHHHHHHHHcC-ccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccc
Confidence 33688999999999974 4322 55554432 2456778888776541
Q ss_pred -CCC---------CCcHHHHHHHHHHHHhcCC-------hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHH
Q psy8681 306 -PRL---------DMPELVWKAYIDFEVGQGE-------RDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367 (521)
Q Consensus 306 -~~~---------~~~~~lw~~yi~~e~~~g~-------~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~A 367 (521)
.|. .....-|..||.+|...|- ....--+|+.++.-.+ ++.+|+.|..+....++ -++|
T Consensus 245 ~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd---~q~a 321 (660)
T COG5107 245 KNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISD---KQKA 321 (660)
T ss_pred cCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccH---HHHH
Confidence 100 0123459999999987542 2344456788888776 78999999999999988 8999
Q ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhh
Q psy8681 368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKK 420 (521)
Q Consensus 368 R~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~k 420 (521)
..+.++|+..+|. |.-.+..++....+.+.+..+..++-..+++
T Consensus 322 l~tv~rg~~~sps---------L~~~lse~yel~nd~e~v~~~fdk~~q~L~r 365 (660)
T COG5107 322 LKTVERGIEMSPS---------LTMFLSEYYELVNDEEAVYGCFDKCTQDLKR 365 (660)
T ss_pred HHHHHhcccCCCc---------hheeHHHHHhhcccHHHHhhhHHHHHHHHHH
Confidence 9999999998885 4444455555666666666666666555543
No 74
>KOG0128|consensus
Probab=99.14 E-value=6.9e-09 Score=110.73 Aligned_cols=298 Identities=17% Similarity=0.189 Sum_probs=197.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc---CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN---GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~---g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
....|+++..+.. ..+. ...| ++.+|+.|+.-+... ++...+...|++|+... .+..+|..+++|....
T Consensus 123 lrk~~dl~kl~~ar~~~~--~~~pl~~~lWl~Wl~d~~~mt~s~~~~~v~~~~ekal~dy----~~v~iw~e~~~y~~~~ 196 (881)
T KOG0128|consen 123 LRKLGDLEKLRQARLEMS--EIAPLPPHLWLEWLKDELSMTQSEERKEVEELFEKALGDY----NSVPIWEEVVNYLVGF 196 (881)
T ss_pred HHHhcchHHHHHHHHHHH--HhcCCChHHHHHHHHHHHhhccCcchhHHHHHHHHHhccc----ccchHHHHHHHHHHhc
Confidence 4457888888888 8888 8899 889999999887753 57778888999998753 4678999999988766
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh--hHHHHHHHHHHHHHHcCChhhHHHHH----------
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD--RTAEIYKAYTIHEKKYGDRAGIEDVI---------- 228 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~--~~~~l~~~~~~~e~~~G~~~~a~~~i---------- 228 (521)
+.. ....++++..|.+|.+||...... ....+|..|..|+..+-.-.....++
T Consensus 197 ~~~---------------~~~~~d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~ 261 (881)
T KOG0128|consen 197 GNV---------------AKKSEDYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQP 261 (881)
T ss_pred ccc---------------ccccccchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcc
Confidence 511 111136777788888887764332 23467777777766442111111110
Q ss_pred --------------------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 229 --------------------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 229 --------------------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
+.+.+..|++.+...|.-...|..|+.++..+|.+.....+++|++..
T Consensus 262 ~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E 341 (881)
T KOG0128|consen 262 LDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAE 341 (881)
T ss_pred chhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHh
Confidence 122345678888888989999999999999999999999999999998
Q ss_pred CCchh-----HHH-HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC------------------------
Q psy8681 277 IPPTK-----FAE-LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG------------------------ 326 (521)
Q Consensus 277 ~P~~~-----~a~-le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g------------------------ 326 (521)
.+.+. |+. +-..++-.+++..++.+++..||.. ..+|..|.-.+.+.+
T Consensus 342 ~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~t--gdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~~~~ 419 (881)
T KOG0128|consen 342 MVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWT--GDLWKRALLALERNREEITVIVQNLEKDLSMTVELHNDY 419 (881)
T ss_pred ccccHHHHhhhhhhcccccccccccccccchhhcCCchH--HHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHH
Confidence 77654 221 2234566677778888888877653 456766653322222
Q ss_pred --------------ChHHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 327 --------------ERDKVRELHERLLERT---------VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 327 --------------~~~~Ar~l~eral~~~---------~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
.++.-++.|..|.... +...+.-.+|.++.+... +.+.||.|...-+..-.
T Consensus 420 ~~~rr~~~~~~~s~~~s~lr~~F~~A~~eLt~~~~~~~Dt~~~~~q~wA~~E~sl~~--nmd~~R~iWn~imty~~---- 493 (881)
T KOG0128|consen 420 LAYRRRCTNIIDSQDYSSLRAAFNHAWEELTELYGDQLDTRTEVLQLWAQVEASLLK--NMDKAREIWNFIMTYGG---- 493 (881)
T ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHhh--chhhhhHhhhccccCCc----
Confidence 2333344444443321 123444556666665432 37777777665544322
Q ss_pred hHHHHH-HHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 384 KEERVM-LLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 384 ~~~~~~-l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
.+.. .|..++.+|..||+...++.+..++
T Consensus 494 --~~iag~Wle~~~lE~~~g~~~~~R~~~R~a 523 (881)
T KOG0128|consen 494 --GSIAGKWLEAINLEREYGDGPSARKVLRKA 523 (881)
T ss_pred --chHHHHHHHHHhHHHHhCCchhHHHHHHHH
Confidence 2234 8999999999999999999976555
No 75
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=2.4e-07 Score=89.54 Aligned_cols=252 Identities=14% Similarity=0.065 Sum_probs=189.6
Q ss_pred cCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC------hhhHHHHHHHHHHcCChh
Q psy8681 70 QGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD------TTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 70 ~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~------~~~W~~~a~~e~~~g~~~ 127 (521)
..+.+.|..+|- +|.. ..+.|+.|+|+.+ +-.+ ..|+ .-.-..+++-++..|=+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~---~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLL---ESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHh---cCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 345666666665 4554 4567889999999 6665 3343 456788999999999999
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
+|..+|...++. | .........+...+.... +++.|+.+-++.....|......+
T Consensus 125 RAE~~f~~L~de-~--efa~~AlqqLl~IYQ~tr----------------------eW~KAId~A~~L~k~~~q~~~~eI 179 (389)
T COG2956 125 RAEDIFNQLVDE-G--EFAEGALQQLLNIYQATR----------------------EWEKAIDVAERLVKLGGQTYRVEI 179 (389)
T ss_pred HHHHHHHHHhcc-h--hhhHHHHHHHHHHHHHhh----------------------HHHHHHHHHHHHHHcCCccchhHH
Confidence 999999998874 1 123455566666776666 899999999888888776654444
Q ss_pred HHHHHH---HHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---
Q psy8681 208 YKAYTI---HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--- 281 (521)
Q Consensus 208 ~~~~~~---~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--- 281 (521)
-.-|.. -.....+.+.+. ..+.+|+..+|++..+=..+++++...|++..|.+.++++++.+|...
T Consensus 180 AqfyCELAq~~~~~~~~d~A~--------~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~ev 251 (389)
T COG2956 180 AQFYCELAQQALASSDVDRAR--------ELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEV 251 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHH--------HHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHH
Confidence 444433 333334444444 449999999999999999999999999999999999999999999754
Q ss_pred ---HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Q psy8681 282 ---FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 ---~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~ 358 (521)
+...+..+|..+..+..+.++++..+.. .+-....++.......+.|.....+-|...|+...+..+..+...-
T Consensus 252 l~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~---~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~d 328 (389)
T COG2956 252 LEMLYECYAQLGKPAEGLNFLRRAMETNTGA---DAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLAD 328 (389)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHccCCc---cHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcc
Confidence 5566788999999999999999865432 2334444555566778899999999999999999998888887765
Q ss_pred CC
Q psy8681 359 GD 360 (521)
Q Consensus 359 g~ 360 (521)
+.
T Consensus 329 ae 330 (389)
T COG2956 329 AE 330 (389)
T ss_pred cc
Confidence 54
No 76
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=1.6e-07 Score=96.24 Aligned_cols=281 Identities=15% Similarity=0.041 Sum_probs=162.6
Q ss_pred HHHHH-HHHHhcCChhhhhhhcC-----CC---cH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHH
Q psy8681 60 KAWKK-AMEEKQGNKIGEEGANK-----EN---EE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELV 118 (521)
Q Consensus 60 ~~W~~-~~e~~~gn~~~Ar~ife-----~P---~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~ 118 (521)
..|.. .++...|+.+.+...+. .| +. ....|+++.|..+ ++++ ..+| +...|.. +.
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l--~~~P~~~~a~~~-~~ 84 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLL--DDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHH-hH
Confidence 44555 66666777777655554 12 11 4455677777777 7777 6677 4444442 22
Q ss_pred HHHHcCChhHHHHHHHHHHHh-cCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHh
Q psy8681 119 FEEQNGFVSGARKVYERAVEF-FGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 119 ~e~~~g~~~~Ar~vye~Al~~-~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
.....|....+...+.+++.. .+.++.....+..++.....+| .+++|...|++++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G----------------------~~~~A~~~~~~al~ 142 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAG----------------------QYDRAEEAARRALE 142 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHh
Confidence 222222222222222222221 1222223333334444555555 88899999999999
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY----DAWFDYLRLLEDEGNADLIRETYERA 273 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~----~~W~~y~~~~~~~g~~~~Ar~~~erA 273 (521)
..|.+. .++..++......|+.+.+... |++++...|.++ ..|+.++.++...|+.++|..+|+++
T Consensus 143 ~~p~~~--~~~~~la~i~~~~g~~~eA~~~--------l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 143 LNPDDA--WAVHAVAHVLEMQGRFKEGIAF--------MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred hCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888875 6777778888888888888766 888888776432 46778888888999999999999998
Q ss_pred HHcCCchh-HH------H-H--HHHcCCHHHHHH---HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 274 IANIPPTK-FA------E-L--ESLLGDMERARA---IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 274 l~~~P~~~-~a------~-l--e~~~g~~e~Ar~---ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
+...|... .. . + ....|....+.. +........+...........+......|+.+.|..+++.+..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~ 292 (355)
T cd05804 213 IAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG 292 (355)
T ss_pred hccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 76555211 11 0 1 112232222222 2222211111111122223455556678888989998887765
Q ss_pred cC-C---------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 341 RT-V---------HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 341 ~~-~---------~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
.. . .+.+.+..+......|+ .+.|...+.+|+...
T Consensus 293 ~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~---~~~A~~~L~~al~~a 337 (355)
T cd05804 293 RASSADDNKQPARDVGLPLAEALYAFAEGN---YATALELLGPVRDDL 337 (355)
T ss_pred HHhccCchhhhHHhhhHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Confidence 32 1 13344445556666777 888888888888654
No 77
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=4.6e-07 Score=92.87 Aligned_cols=205 Identities=15% Similarity=0.073 Sum_probs=151.4
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| .+..|..++.++...|+.+.+...|.++....+............+......+ ++
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g----------------------~~ 59 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG----------------------DL 59 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC----------------------CH
Confidence 57 57788899999999999999999999999887654433444444444444555 89
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHH-HHHHH--HHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYK-AYTIH--EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~-~~~~~--e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++|..++++++...|.+. ..+. .+..+ -...|....+... +......+|.....+..++..+...|+
T Consensus 60 ~~A~~~~~~~l~~~P~~~--~a~~~~~~~~~~~~~~~~~~~~~~~--------l~~~~~~~~~~~~~~~~~a~~~~~~G~ 129 (355)
T cd05804 60 PKALALLEQLLDDYPRDL--LALKLHLGAFGLGDFSGMRDHVARV--------LPLWAPENPDYWYLLGMLAFGLEEAGQ 129 (355)
T ss_pred HHHHHHHHHHHHHCCCcH--HHHHHhHHHHHhcccccCchhHHHH--------HhccCcCCCCcHHHHHHHHHHHHHcCC
Confidence 999999999999999876 3333 21211 1122333333322 333334566777777788889999999
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLD--MPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
+++|...|++++...|.+. ++.+....|+++.|...|++++...+.+ .....|..++.++...|+++.|..+|
T Consensus 130 ~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 130 YDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999999999876 5777888999999999999999854321 12345667788899999999999999
Q ss_pred HHHHhcCC
Q psy8681 336 ERLLERTV 343 (521)
Q Consensus 336 eral~~~~ 343 (521)
++++...+
T Consensus 210 ~~~~~~~~ 217 (355)
T cd05804 210 DTHIAPSA 217 (355)
T ss_pred HHHhcccc
Confidence 99986655
No 78
>KOG1156|consensus
Probab=99.04 E-value=9.3e-07 Score=92.54 Aligned_cols=281 Identities=14% Similarity=0.138 Sum_probs=185.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.-..|+-++|-.. ..++ ...+ |...|..+|-+.....++++|.++|..|+..-+ ++..||..++-+..+.+ .
T Consensus 51 L~~lg~~~ea~~~vr~gl--r~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~---dN~qilrDlslLQ~QmR-d 124 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGL--RNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK---DNLQILRDLSLLQIQMR-D 124 (700)
T ss_pred hhcccchHHHHHHHHHHh--ccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHHH-h
Confidence 4457899999999 9999 8888 899999999999999999999999999999844 57899999888777666 3
Q ss_pred ccccchhhHHHHH-----------hh--hhhhhhHHHHHHHHHHHHhcC---ChhhH-----HHHHHHHHHHHHHcCChh
Q psy8681 164 YGDRAGIEDVIVS-----------KR--KFQYEEHERARVIYKYALDHI---PKDRT-----AEIYKAYTIHEKKYGDRA 222 (521)
Q Consensus 164 ~~~~~~~~~~~l~-----------~~--~~~~~~~e~Ar~iy~~aL~~~---P~~~~-----~~l~~~~~~~e~~~G~~~ 222 (521)
|..-...+..++. -+ ..-.|++..|..+.+.-.... |.... .-++... .....|..+
T Consensus 125 ~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~--i~~E~g~~q 202 (700)
T KOG1156|consen 125 YEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQ--ILIEAGSLQ 202 (700)
T ss_pred hhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHH--HHHHcccHH
Confidence 3332222222221 11 223467888887776655543 33210 0112211 122233333
Q ss_pred hHHHHH--------------------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHH
Q psy8681 223 GIEDVI--------------------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLED-EGNADLIRETYERAIA 275 (521)
Q Consensus 223 ~a~~~i--------------------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~Ar~~~erAl~ 275 (521)
.+.+.. +......|...+..+|++.+.+..|...+.. .+.......+|...-+
T Consensus 203 ~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 203 KALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 222211 1223456888889999999998888888863 3333344477777655
Q ss_pred cCCchh----------------------------------HHHHHHHcCCHHHHHHHHHHHHc-------CC---C----
Q psy8681 276 NIPPTK----------------------------------FAELESLLGDMERARAIYELAIS-------QP---R---- 307 (521)
Q Consensus 276 ~~P~~~----------------------------------~a~le~~~g~~e~Ar~ife~al~-------~~---~---- 307 (521)
..|.+. +..+..-..+...+- +.++.+. .. +
T Consensus 283 ~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~ 361 (700)
T KOG1156|consen 283 KYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDD 361 (700)
T ss_pred cCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccc
Confidence 544432 333443344433322 3343331 11 0
Q ss_pred ---CCCcHHHHHHHHH--HHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 308 ---LDMPELVWKAYID--FEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 308 ---~~~~~~lw~~yi~--~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
-.+...+|..|-- -.-..|+++.|....+.++..+|. ++.++.=|.+..+.|. ++.|-.+++.|.+..
T Consensus 362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~---l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGL---LDEAAAWLDEAQELD 435 (700)
T ss_pred cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHhcc
Confidence 0124678988743 344679999999999999999985 8899999999999998 999999999987654
No 79
>KOG1173|consensus
Probab=99.03 E-value=1.9e-07 Score=96.31 Aligned_cols=232 Identities=14% Similarity=0.075 Sum_probs=186.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++++-...++-+...+++..+.++++..++..|-+...-.+.++ .+.+ ....
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia--~l~e--------------------------l~~~ 294 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIA--CLYE--------------------------LGKS 294 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHH--HHHH--------------------------hccc
Confidence 57788888888888999999999999999997744333333332 2221 1222
Q ss_pred HHHH---HHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8681 189 RVIY---KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 189 r~iy---~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~ 265 (521)
..+| .+.++..|... .-|.+.+.+.-..|....|... |-++...+|....+|+.||..+.-.|..++
T Consensus 295 n~Lf~lsh~LV~~yP~~a--~sW~aVg~YYl~i~k~seARry--------~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 295 NKLFLLSHKLVDLYPSKA--LSWFAVGCYYLMIGKYSEARRY--------FSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred chHHHHHHHHHHhCCCCC--cchhhHHHHHHHhcCcHHHHHH--------HHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 3344 45566788876 7899999888888988888766 999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchh----HHHHHHH-cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 266 IRETYERAIANIPPTK----FAELESL-LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 266 Ar~~~erAl~~~P~~~----~a~le~~-~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
|...|..|-+.+|.+. |..++.. ++++..|...|..|+...|.+ +.+.+..+-+....+.+.+|..+|+.++.
T Consensus 365 AmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~D--plv~~Elgvvay~~~~y~~A~~~f~~~l~ 442 (611)
T KOG1173|consen 365 AMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSD--PLVLHELGVVAYTYEEYPEALKYFQKALE 442 (611)
T ss_pred HHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCc--chhhhhhhheeehHhhhHHHHHHHHHHHH
Confidence 9999999999999876 7777665 899999999999999988765 34555555455567899999999999995
Q ss_pred cC----C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 341 RT----V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 341 ~~----~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
.- + -.++|.+++....+++. ++.|...|++|+...|.+..
T Consensus 443 ~ik~~~~e~~~w~p~~~NLGH~~Rkl~~---~~eAI~~~q~aL~l~~k~~~ 490 (611)
T KOG1173|consen 443 VIKSVLNEKIFWEPTLNNLGHAYRKLNK---YEEAIDYYQKALLLSPKDAS 490 (611)
T ss_pred HhhhccccccchhHHHHhHHHHHHHHhh---HHHHHHHHHHHHHcCCCchh
Confidence 42 1 24568889999999988 99999999999999998754
No 80
>KOG0624|consensus
Probab=99.02 E-value=1.8e-07 Score=90.94 Aligned_cols=272 Identities=12% Similarity=0.035 Sum_probs=200.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
++..|.-..|..- .+.+ ...|+ ...-+.-+.++++.|.++.|..-|...|...|++.........++...+...
T Consensus 82 yLAmGksk~al~Dl~rVl--elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~-- 157 (504)
T KOG0624|consen 82 YLAMGKSKAALQDLSRVL--ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWV-- 157 (504)
T ss_pred HhhhcCCccchhhHHHHH--hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHH--
Confidence 4455555666666 7888 88885 6778888999999999999999999999886654333344444443332221
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
.+-.-..++..|+...|+......|+..|=+. .++..-+......|....|..- ...+-.+.
T Consensus 158 --------l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda--~l~~~Rakc~i~~~e~k~AI~D--------lk~askLs 219 (504)
T KOG0624|consen 158 --------LVQQLKSASGSGDCQNAIEMITHLLEIQPWDA--SLRQARAKCYIAEGEPKKAIHD--------LKQASKLS 219 (504)
T ss_pred --------HHHHHHHHhcCCchhhHHHHHHHHHhcCcchh--HHHHHHHHHHHhcCcHHHHHHH--------HHHHHhcc
Confidence 00111224556789999999999999988766 7777777777778887777654 77777778
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHH----------HH--HHcCCHHHHHHHHHHHHcCC
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAE----------LE--SLLGDMERARAIYELAISQP 306 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~----------le--~~~g~~e~Ar~ife~al~~~ 306 (521)
..+.+..+....++...|+...+......+++.+|++. |-. ++ ...+++..+.+..+..+...
T Consensus 220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~e 299 (504)
T KOG0624|consen 220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNE 299 (504)
T ss_pred ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 88999999999999999999999999999999999876 211 11 24578888888999988865
Q ss_pred CCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 307 RLDMP--ELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 307 ~~~~~--~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
|...+ .......-.-...-|++.+|+....++|...|+ +.+.+.-+..+..... ++.|..-|+.|.+..+++.
T Consensus 300 p~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~---YD~AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 300 PEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEM---YDDAIHDYEKALELNESNT 375 (504)
T ss_pred CcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHH---HHHHHHHHHHHHhcCcccH
Confidence 53211 112222222344678999999999999999985 8999988887765444 9999999999999988764
No 81
>KOG1840|consensus
Probab=99.01 E-value=5.8e-08 Score=102.23 Aligned_cols=165 Identities=15% Similarity=0.092 Sum_probs=108.0
Q ss_pred HHhcccchhhHHH-HhhhccCC--------CCChhhHH-HHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDR--------DSDTTYGM-RELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLF 150 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~--------~P~~~~W~-~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw 150 (521)
+..+|+++.|..+ .+++ .. ||.+..-. .++.++...+++.+|..+|++|+.. +|. ++....++
T Consensus 209 y~~~g~~e~A~~l~k~Al--~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l 286 (508)
T KOG1840|consen 209 YAVQGRLEKAEPLCKQAL--RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATL 286 (508)
T ss_pred HHHhccHHHHHHHHHHHH--HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 6677888888888 8888 44 88655444 5999999999999999999999986 333 33346677
Q ss_pred HHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC-------ChhhHHHHHHHHHHHHHHcCChhh
Q psy8681 151 IAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI-------PKDRTAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 151 ~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~-------P~~~~~~l~~~~~~~e~~~G~~~~ 223 (521)
.+++.+.-..| ++++|...|++|+++. +.. ........+......+..+.
T Consensus 287 ~nLa~ly~~~G----------------------Kf~EA~~~~e~Al~I~~~~~~~~~~~-v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 287 NNLAVLYYKQG----------------------KFAEAEEYCERALEIYEKLLGASHPE-VAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred HHHHHHHhccC----------------------ChHHHHHHHHHHHHHHHHhhccChHH-HHHHHHHHHHHHHHhcchhH
Confidence 77777777676 7778877777777652 211 12334444445555566666
Q ss_pred HHHHHHhhHHHHHHHHHhh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 224 IEDVIVSKRKFQYEEEVNS-NPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~-~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
+.... .+...+|..+... +|.-..+..+++.++...|++.+|+.+|+.|+..
T Consensus 344 a~~l~-q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~ 396 (508)
T KOG1840|consen 344 AKKLL-QKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQI 396 (508)
T ss_pred HHHHH-HHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 66541 1122222222222 2234567777777777888888888888887764
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.92 E-value=3e-07 Score=88.63 Aligned_cols=191 Identities=13% Similarity=-0.019 Sum_probs=112.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..+...+..+...|+++.|...|++++...|.++.....|...+......+ +++.|
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~----------------------~~~~A 89 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSG----------------------DYAEA 89 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcC----------------------CHHHH
Confidence 57889999999999999999999999999998754444567888888888887 99999
Q ss_pred HHHHHHHHhcCChhhHH-HHHHHHHHHHHHc--------CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTA-EIYKAYTIHEKKY--------GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~-~l~~~~~~~e~~~--------G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
...|+.++...|.+... ..+...+...... |+...+... |++++..+|.+...|..+..+...
T Consensus 90 ~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 90 IAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA--------FQELIRRYPNSEYAPDAKKRMDYL 161 (235)
T ss_pred HHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH--------HHHHHHHCCCChhHHHHHHHHHHH
Confidence 99999999999976521 1222222222111 333334433 777777777766555443332221
Q ss_pred cCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~-~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+.. .... ...+.++...|++..|...|+.++...|.. ....+|...+..+...|++++|..+++.+
T Consensus 162 ~~~~-------~~~~-----~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 162 RNRL-------AGKE-----LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHH-------HHHH-----HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1000 0000 002334445555555555555555533221 12344555555555555555555555554
Q ss_pred Hhc
Q psy8681 339 LER 341 (521)
Q Consensus 339 l~~ 341 (521)
...
T Consensus 230 ~~~ 232 (235)
T TIGR03302 230 GAN 232 (235)
T ss_pred Hhh
Confidence 443
No 83
>KOG1129|consensus
Probab=98.90 E-value=1.4e-07 Score=91.17 Aligned_cols=222 Identities=16% Similarity=0.100 Sum_probs=181.7
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 171 ~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
|..-+++.++..|-+.+|..-++.+|+..|.- ..|..+.....+......+..+ |-+.+...|.+....
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~~~---dTfllLskvY~ridQP~~AL~~--------~~~gld~fP~~VT~l 293 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---DTFLLLSKVYQRIDQPERALLV--------IGEGLDSFPFDVTYL 293 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCCch---hHHHHHHHHHHHhccHHHHHHH--------HhhhhhcCCchhhhh
Confidence 44556777777788999999999999998865 3566666666677777788766 999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 251 FDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 251 ~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
...++.++..++.+.|.++|.++++..|.+. .+.-+.--|+.+-|...|.+.++.... ++.+++..+--..-.
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~ya 371 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLYA 371 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHhh
Confidence 9999999999999999999999999988765 122233458899999999999986533 346777766555567
Q ss_pred CChHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc
Q psy8681 326 GERDKVRELHERLLERT--V--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~--~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~ 401 (521)
+.++-+...|+|++... | ..+||.+++......|+ +.-|...|+-|+...++++ .-+..+.-++.+-
T Consensus 372 qQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD---~nlA~rcfrlaL~~d~~h~------ealnNLavL~~r~ 442 (478)
T KOG1129|consen 372 QQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGD---FNLAKRCFRLALTSDAQHG------EALNNLAVLAARS 442 (478)
T ss_pred cchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccc---hHHHHHHHHHHhccCcchH------HHHHhHHHHHhhc
Confidence 89999999999999864 3 47899999999888888 9999999999999888764 4566677788899
Q ss_pred CCHHHHHHHHhhC
Q psy8681 402 GDDESRAKLNSKL 414 (521)
Q Consensus 402 G~~~~~~~v~~~~ 414 (521)
|+...++.+.+..
T Consensus 443 G~i~~Arsll~~A 455 (478)
T KOG1129|consen 443 GDILGARSLLNAA 455 (478)
T ss_pred CchHHHHHHHHHh
Confidence 9999999887655
No 84
>PLN02789 farnesyltranstransferase
Probab=98.90 E-value=6.2e-07 Score=90.23 Aligned_cols=182 Identities=12% Similarity=0.008 Sum_probs=137.9
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.+..++|..+ .++| ..+| +..+|...+.+....| .++++...+++++...| .+..+|..-+-+....+
T Consensus 50 ~e~serAL~lt~~aI--~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np---knyqaW~~R~~~l~~l~---- 120 (320)
T PLN02789 50 DERSPRALDLTADVI--RLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP---KNYQIWHHRRWLAEKLG---- 120 (320)
T ss_pred CCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC---cchHHhHHHHHHHHHcC----
Confidence 4567788888 8999 9999 7899999999999888 67999999999999865 46678887665555444
Q ss_pred ccchhhHHHHHhhhhhhhh--HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 166 DRAGIEDVIVSKRKFQYEE--HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~--~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
. .+.+..++.++|+.+|.+. .+|..-.-+....|..+.+... |.++|..+
T Consensus 121 ------------------~~~~~~el~~~~kal~~dpkNy--~AW~~R~w~l~~l~~~~eeL~~--------~~~~I~~d 172 (320)
T PLN02789 121 ------------------PDAANKELEFTRKILSLDAKNY--HAWSHRQWVLRTLGGWEDELEY--------CHQLLEED 172 (320)
T ss_pred ------------------chhhHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHhhhHHHHHHH--------HHHHHHHC
Confidence 3 3677889999999999987 7888777777788888877766 99999999
Q ss_pred CCCHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHcCCchh-----HHHHHHH----cCCHHHHHHHHHHHHcCCC
Q psy8681 244 PNNYDAWFDYLRLLEDE---GNA----DLIRETYERAIANIPPTK-----FAELESL----LGDMERARAIYELAISQPR 307 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~---g~~----~~Ar~~~erAl~~~P~~~-----~a~le~~----~g~~e~Ar~ife~al~~~~ 307 (521)
|.|..+|...+.++... |.. +.......++|...|.+. +..+... ++....|...+..++...+
T Consensus 173 ~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~ 252 (320)
T PLN02789 173 VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS 252 (320)
T ss_pred CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC
Confidence 99999999988777654 222 356666678888888765 1222222 3445567777777766433
No 85
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.89 E-value=1.5e-07 Score=90.75 Aligned_cols=176 Identities=11% Similarity=-0.003 Sum_probs=108.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-Ch---hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DT---TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~---~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
....|+++.|... ++++ ..+| ++ ..|...+..+...|+++.|...|++++...|+++.....|...+......
T Consensus 43 ~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~ 120 (235)
T TIGR03302 43 ALDSGDYTEAIKYFEALE--SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQ 120 (235)
T ss_pred HHHcCCHHHHHHHHHHHH--HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHh
Confidence 4456778888888 8999 9998 43 68899999999999999999999999999886544334454444433322
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al 240 (521)
. .......+.++.|...|+.++...|.+. ..+..+..+....+.
T Consensus 121 ~--------------~~~~~~~~~~~~A~~~~~~~~~~~p~~~--~~~~a~~~~~~~~~~-------------------- 164 (235)
T TIGR03302 121 I--------------DRVDRDQTAAREAFEAFQELIRRYPNSE--YAPDAKKRMDYLRNR-------------------- 164 (235)
T ss_pred c--------------ccccCCHHHHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHH--------------------
Confidence 0 0000111378999999999999999875 333333221110000
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 241 NSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 241 ~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~ 304 (521)
........+.++...|+...|...|++++...|.+. .+..+..+|+++.|..+++....
T Consensus 165 -----~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -----LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 001123444555556666666666666666555432 34445556666666665555444
No 86
>KOG1174|consensus
Probab=98.86 E-value=3.1e-07 Score=91.28 Aligned_cols=279 Identities=13% Similarity=0.029 Sum_probs=188.5
Q ss_pred CCCchhhhhhH---HHHHH-HHHHhcCChhhhhhhcC-------CCcH----------HHhcccchhhHHH-HhhhccCC
Q psy8681 49 AKPNLKLLEKA---KAWKK-AMEEKQGNKIGEEGANK-------ENEE----------EERDKERDREEED-ERKDEGDR 106 (521)
Q Consensus 49 ~~rai~~lP~~---~~W~~-~~e~~~gn~~~Ar~ife-------~P~~----------e~r~g~~e~Ar~~-eral~~~~ 106 (521)
-+.++++-|.. ..|.+ ...-..|+...|.+.|- -|++ +...|++++|... ++.. ..
T Consensus 184 ~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~--~~ 261 (564)
T KOG1174|consen 184 VMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTL--CA 261 (564)
T ss_pred hhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHh--hC
Confidence 44556666655 44445 22223344444444432 3554 7788999999999 9988 88
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccch------------hhHH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG------------IEDV 173 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~------------~~~~ 173 (521)
.| .+..--.|+-+..+.|+++..-.+-...+.... ......+.+...+..+. .|.+++. +...
T Consensus 262 dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--~ta~~wfV~~~~l~~~K--~~~rAL~~~eK~I~~~~r~~~al 337 (564)
T KOG1174|consen 262 NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK--YTASHWFVHAQLLYDEK--KFERALNFVEKCIDSEPRNHEAL 337 (564)
T ss_pred ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh--cchhhhhhhhhhhhhhh--hHHHHHHHHHHHhccCcccchHH
Confidence 99 788888888888888888887777777666521 11122222221111111 1111111 1111
Q ss_pred HH-HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH
Q psy8681 174 IV-SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD 252 (521)
Q Consensus 174 ~l-~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~ 252 (521)
.| +..+.+.+..+.|.-.|+.|...-|... ..|..++.-+-.+|.+..|..+ -..++...|.+..+...
T Consensus 338 ilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--~~Y~GL~hsYLA~~~~kEA~~~--------An~~~~~~~~sA~~LtL 407 (564)
T KOG1174|consen 338 ILKGRLLIALERHTQAVIAFRTAQMLAPYRL--EIYRGLFHSYLAQKRFKEANAL--------ANWTIRLFQNSARSLTL 407 (564)
T ss_pred HhccHHHHhccchHHHHHHHHHHHhcchhhH--HHHHHHHHHHHhhchHHHHHHH--------HHHHHHHhhcchhhhhh
Confidence 11 2234555789999999999999988776 7888888777777877776644 56667777888877776
Q ss_pred HH-HHHH-HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 253 YL-RLLE-DEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 253 y~-~~~~-~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
++ ..+. ..---+.|...+++++...|... .++|...-|.+..+.+++++.+...+ +..+....+++..-.
T Consensus 408 ~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~---D~~LH~~Lgd~~~A~ 484 (564)
T KOG1174|consen 408 FGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP---DVNLHNHLGDIMRAQ 484 (564)
T ss_pred hcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc---ccHHHHHHHHHHHHh
Confidence 65 2222 22235789999999999999754 67888888999999999999988654 236888999999999
Q ss_pred CChHHHHHHHHHHHhcCCCHH
Q psy8681 326 GERDKVRELHERLLERTVHVK 346 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~~~~~ 346 (521)
+.+.+|.+.|..+|...|..+
T Consensus 485 Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 485 NEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhHHHHHHHHHHHHhcCccch
Confidence 999999999999999988544
No 87
>KOG2003|consensus
Probab=98.84 E-value=8.5e-07 Score=88.97 Aligned_cols=254 Identities=13% Similarity=0.090 Sum_probs=141.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C-hhhHHHHHH--HHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D-TTYGMRELV--FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~-~~~W~~~a~--~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
+++.|+++.|..+ .-+- .... . ...-..++. |.....++..|...-..|+.... -++....+-++.-...
T Consensus 429 ~lk~~d~~~aieilkv~~--~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr---yn~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFE--KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR---YNAAALTNKGNIAFAN 503 (840)
T ss_pred HHhccCHHHHHHHHHHHH--hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc---cCHHHhhcCCceeeec
Confidence 5666666666666 4333 2222 1 111222222 22223356667666666665521 1233334334433344
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al 240 (521)
| +++.|...|+.||..+.... ......+.-.+..|+.+.+.+. |-+.-
T Consensus 504 g----------------------d~dka~~~ykeal~ndasc~--ealfniglt~e~~~~ldeald~--------f~klh 551 (840)
T KOG2003|consen 504 G----------------------DLDKAAEFYKEALNNDASCT--EALFNIGLTAEALGNLDEALDC--------FLKLH 551 (840)
T ss_pred C----------------------cHHHHHHHHHHHHcCchHHH--HHHHHhcccHHHhcCHHHHHHH--------HHHHH
Confidence 4 67777777777776543322 2222222233455666666655 44444
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 241 NSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 241 ~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
..--++..+...++..++...++.+|+++|-++.+.+|+++ ++.|+-+-|+...|.+.+-....-.|.+....-|
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 44445666667777777777777777777777777777655 5666777777777766665554433332223334
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN-YAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~-ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
. ..+++...=.++|+..|+++--..|+..-|.. .+.+....|+ +.+|-.+|......+|.+
T Consensus 632 l--~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgn---yqka~d~yk~~hrkfped 693 (840)
T KOG2003|consen 632 L--AAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGN---YQKAFDLYKDIHRKFPED 693 (840)
T ss_pred H--HHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccc---HHHHHHHHHHHHHhCccc
Confidence 3 23444555567777777777666676666643 4445555666 777777777777777765
No 88
>KOG2003|consensus
Probab=98.83 E-value=1.4e-06 Score=87.40 Aligned_cols=253 Identities=13% Similarity=0.056 Sum_probs=168.0
Q ss_pred HHhcCChhhhhhhcC---CCcH--------------HHhc-ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCCh
Q psy8681 67 EEKQGNKIGEEGANK---ENEE--------------EERD-KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFV 126 (521)
Q Consensus 67 e~~~gn~~~Ar~ife---~P~~--------------e~r~-g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~ 126 (521)
+...|++++|..|+. .-++ .++- .++-.|-.. +.++ .... ++.....-++.-...|++
T Consensus 429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~al--n~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIAL--NIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHh--cccccCHHHhhcCCceeeecCcH
Confidence 346788888776665 1111 3332 256777777 7777 6666 666667777777777888
Q ss_pred hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH
Q psy8681 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE 206 (521)
Q Consensus 127 ~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~ 206 (521)
++|...|..||.. +..+....++.+--.+.+| ++++|...|-+.-.+.-.+. .
T Consensus 507 dka~~~ykeal~n---dasc~ealfniglt~e~~~----------------------~ldeald~f~klh~il~nn~--e 559 (840)
T KOG2003|consen 507 DKAAEFYKEALNN---DASCTEALFNIGLTAEALG----------------------NLDEALDCFLKLHAILLNNA--E 559 (840)
T ss_pred HHHHHHHHHHHcC---chHHHHHHHHhcccHHHhc----------------------CHHHHHHHHHHHHHHHHhhH--H
Confidence 8888888888875 2234455555554455555 78888888766544333333 4
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----
Q psy8681 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----- 281 (521)
Q Consensus 207 l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----- 281 (521)
+....+.+.....+...+..+ |-++...-|+++.+...++.++-+.|+..+|...+-..-..+|.+.
T Consensus 560 vl~qianiye~led~aqaie~--------~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iew 631 (840)
T KOG2003|consen 560 VLVQIANIYELLEDPAQAIEL--------LMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEW 631 (840)
T ss_pred HHHHHHHHHHHhhCHHHHHHH--------HHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHH
Confidence 555566666666666666655 8888888888888888888888888888888887777777777654
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH-HHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID-FEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSG 359 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~-~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g 359 (521)
++..+....-.+.|...|++|.-..|. ..-|..+|. ..++.|+|.+|..+|...-..+| +.+..--++.+....|
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~---~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPN---QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCcc---HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 455556666778888888887654332 346776654 46678888888888888877776 3444333444444444
No 89
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.83 E-value=9.8e-08 Score=84.87 Aligned_cols=86 Identities=14% Similarity=0.102 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. ..|..++......|+.+.|... |++++..+|.++.+|+.++..+...|+.
T Consensus 39 ~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~--------y~~Al~l~p~~~~a~~~lg~~l~~~g~~ 108 (144)
T PRK15359 39 DYSRAVIDFSWLVMAQPWSW--RAHIALAGTWMMLKEYTTAINF--------YGHALMLDASHPEPVYQTGVCLKMMGEP 108 (144)
T ss_pred CHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence 55555555555555555544 4555555555555555555444 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|+..|++|+...|.
T Consensus 109 ~eAi~~~~~Al~~~p~ 124 (144)
T PRK15359 109 GLAREAFQTAIKMSYA 124 (144)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 5555555555555554
No 90
>PLN02789 farnesyltranstransferase
Probab=98.82 E-value=4.4e-06 Score=84.12 Aligned_cols=209 Identities=11% Similarity=0.038 Sum_probs=152.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
.+|..+-.+....+..++|..++.++|...| .+..+|..-+......+ ..++++..
T Consensus 38 ~a~~~~ra~l~~~e~serAL~lt~~aI~lnP---~~ytaW~~R~~iL~~L~---------------------~~l~eeL~ 93 (320)
T PLN02789 38 EAMDYFRAVYASDERSPRALDLTADVIRLNP---GNYTVWHFRRLCLEALD---------------------ADLEEELD 93 (320)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCc---hhHHHHHHHHHHHHHcc---------------------hhHHHHHH
Confidence 4555555566667889999999999999966 46778887777666554 14789999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCCh--hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDR--AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~--~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
.+.+++...|++. .+|.--..+....|.. ..+... ++++|..+|.|+.+|...+-++...|..+++..
T Consensus 94 ~~~~~i~~npkny--qaW~~R~~~l~~l~~~~~~~el~~--------~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~ 163 (320)
T PLN02789 94 FAEDVAEDNPKNY--QIWHHRRWLAEKLGPDAANKELEF--------TRKILSLDAKNYHAWSHRQWVLRTLGGWEDELE 163 (320)
T ss_pred HHHHHHHHCCcch--HHhHHHHHHHHHcCchhhHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999987 6787666555566652 333333 889999999999999999999999999999999
Q ss_pred HHHHHHHcCCchh--H---HHHHHHc---CCH----HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHHH
Q psy8681 269 TYERAIANIPPTK--F---AELESLL---GDM----ERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKVR 332 (521)
Q Consensus 269 ~~erAl~~~P~~~--~---a~le~~~---g~~----e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar 332 (521)
.++++|...|.+. | +.+...+ |.. +.+......+|...|.+ ...|.-...++.. .+....|.
T Consensus 164 ~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N--~SaW~Yl~~ll~~~~~~l~~~~~~~ 241 (320)
T PLN02789 164 YCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN--ESPWRYLRGLFKDDKEALVSDPEVS 241 (320)
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC--cCHHHHHHHHHhcCCcccccchhHH
Confidence 9999999988765 1 1111222 322 46777777899876654 4588877777666 34556788
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHH
Q psy8681 333 ELHERLLERTV-HVKVWMNYAQFE 355 (521)
Q Consensus 333 ~l~eral~~~~-~~~vwi~ya~~e 355 (521)
..+..++...+ ++.+.--++...
T Consensus 242 ~~~~~~~~~~~~s~~al~~l~d~~ 265 (320)
T PLN02789 242 SVCLEVLSKDSNHVFALSDLLDLL 265 (320)
T ss_pred HHHHHhhcccCCcHHHHHHHHHHH
Confidence 88988888665 333333334433
No 91
>KOG1127|consensus
Probab=98.81 E-value=1.4e-07 Score=102.40 Aligned_cols=155 Identities=15% Similarity=0.104 Sum_probs=77.0
Q ss_pred chhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccch
Q psy8681 92 RDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG 169 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~ 169 (521)
...|... -+++ ...|+ ...|..+|.++...-+..+|+++|.+|.++.+ .+...|-..+.......
T Consensus 474 ~~~al~ali~al--rld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa---tdaeaaaa~adtyae~~-------- 540 (1238)
T KOG1127|consen 474 SALALHALIRAL--RLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA---TDAEAAAASADTYAEES-------- 540 (1238)
T ss_pred HHHHHHHHHHHH--hcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hhhhhHHHHHHHhhccc--------
Confidence 4445555 5555 55663 56666666666665566666666666666632 23344444444333332
Q ss_pred hhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 170 IEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 170 ~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
+.+.|..|.-.+-+..|......-|...+-++-.-++...+ ...|+.++..+|.++..
T Consensus 541 --------------~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~a--------V~~fQsALR~dPkD~n~ 598 (1238)
T KOG1127|consen 541 --------------TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGA--------VCEFQSALRTDPKDYNL 598 (1238)
T ss_pred --------------cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhH--------HHHHHHHhcCCchhHHH
Confidence 33333333222222222221111121111111111222222 23466666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
|..++..+...|.+..|.++|.+|....|.+.
T Consensus 599 W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 599 WLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred HHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 66666666666666666666666666666654
No 92
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.81 E-value=2.8e-07 Score=101.58 Aligned_cols=140 Identities=11% Similarity=0.070 Sum_probs=129.6
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..+| +++....++.+..+.|.+++|..++++++++.| .+..++..++....+.+
T Consensus 80 ~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P---d~~~a~~~~a~~L~~~~---------------------- 134 (694)
T PRK15179 80 RRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP---DSSEAFILMLRGVKRQQ---------------------- 134 (694)
T ss_pred HhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC---CcHHHHHHHHHHHHHhc----------------------
Confidence 5567 699999999999999999999999999999976 47889999999999988
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.+++|...++++|...|.+. .....++....+.|..+.|..+ |++++..+|.+..+|..++..+...|+.
T Consensus 135 ~~eeA~~~~~~~l~~~p~~~--~~~~~~a~~l~~~g~~~~A~~~--------y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 135 GIEAGRAEIELYFSGGSSSA--REILLEAKSWDEIGQSEQADAC--------FERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred cHHHHHHHHHHHhhcCCCCH--HHHHHHHHHHHHhcchHHHHHH--------HHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999999987 7788888888899999999987 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++|+....+
T Consensus 205 ~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 205 WRARDVLQAGLDAIGD 220 (694)
T ss_pred HHHHHHHHHHHHhhCc
Confidence 9999999999997654
No 93
>KOG1840|consensus
Probab=98.80 E-value=1.6e-06 Score=91.42 Aligned_cols=246 Identities=15% Similarity=0.152 Sum_probs=171.3
Q ss_pred CCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhc----CCc-cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 105 DRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFF----GEE-NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 105 ~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~----~~~-~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
..+|. ..+-..++..+...|+++.|..+|++|+..+ |.. +.-......++.+...++
T Consensus 193 ~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~----------------- 255 (508)
T KOG1840|consen 193 DEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG----------------- 255 (508)
T ss_pred cCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-----------------
Confidence 44563 5566679999999999999999999999973 211 111233344666776666
Q ss_pred hhhhhhHHHHHHHHHHHHhcC-----Chh-hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHH
Q psy8681 179 KFQYEEHERARVIYKYALDHI-----PKD-RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWF 251 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~-----P~~-~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~ 251 (521)
++.+|..+|+.||+.. +.+ .....+..++.+.-+.|.+..+...+ ..+..+|++.+..+ |.-.....
T Consensus 256 -----k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~-e~Al~I~~~~~~~~~~~v~~~l~ 329 (508)
T KOG1840|consen 256 -----KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYC-ERALEIYEKLLGASHPEVAAQLS 329 (508)
T ss_pred -----cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHH-HHHHHHHHHhhccChHHHHHHHH
Confidence 9999999999999862 111 12366777777778889988887651 12222333322222 22344566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCC---c--hh--------HHHHHHHcCCHHHHHHHHHHHHcCC-------CCCCc
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIP---P--TK--------FAELESLLGDMERARAIYELAISQP-------RLDMP 311 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P---~--~~--------~a~le~~~g~~e~Ar~ife~al~~~-------~~~~~ 311 (521)
..+..+...+.+++|..+|++++++.- . +. ++.++..+|.+..|+.+|+.|+... .....
T Consensus 330 ~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~ 409 (508)
T KOG1840|consen 330 ELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVG 409 (508)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhh
Confidence 677777888999999999999988632 1 11 7888999999999999999999732 11112
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----C-C---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT----V-H---VKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~----~-~---~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
..+|.. +..+.+.+.+..|-.+|.++..+. | + ..++.+++..+...|+ ++.|..+.++++..
T Consensus 410 ~~l~~l-a~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~---~e~a~~~~~~~~~~ 479 (508)
T KOG1840|consen 410 KPLNQL-AEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGN---YEAAEELEEKVLNA 479 (508)
T ss_pred HHHHHH-HHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHccc---HHHHHHHHHHHHHH
Confidence 345544 334468889999999999887652 2 2 3467889999999999 99999988888743
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=2.6e-07 Score=86.68 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=95.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
.|++++..+|.+...|..++.++...|+++.|...|++|+...|.+ ..+
T Consensus 61 ~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~-------------------------------~~~ 109 (198)
T PRK10370 61 ALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN-------------------------------AEL 109 (198)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-------------------------------HHH
Confidence 4999999999999999999999999999999999999999888752 356
Q ss_pred HHHHHHHH-HhcCC--hHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 315 WKAYIDFE-VGQGE--RDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 315 w~~yi~~e-~~~g~--~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
|..++..+ ...|+ .+.|+.+|+++++..| ++.++..++......|+ ++.|...|+++++..|...
T Consensus 110 ~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~---~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 110 YAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD---YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCc
Confidence 77777643 55566 4888888888888886 67888888888888888 8888888888888887753
No 95
>KOG0548|consensus
Probab=98.79 E-value=8.6e-06 Score=83.91 Aligned_cols=295 Identities=12% Similarity=0.029 Sum_probs=193.3
Q ss_pred HHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhH
Q psy8681 66 MEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~ 128 (521)
.--+.|+++.|..+|. .|.+ +..+|.|+.|..- .+.+ ...|+ +..|...|......|++++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~--~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTR--RLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHH--hcCCchhhHHHHhHHHHHhcccHHH
Confidence 3347899999999998 5655 8889999999999 9999 99995 8999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhh-----------------------hh-----------------------
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ-----------------------RE----------------------- 162 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~-----------------------~~----------------------- 162 (521)
|+..|..+|+..|+ +..+...+++.+... ..
T Consensus 89 A~~ay~~GL~~d~~---n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 89 AILAYSEGLEKDPS---NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHhhcCCc---hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999998653 334444433322111 00
Q ss_pred -hccccchh---------------------------------------------------hHHHHHhhhhhhhhHHHHHH
Q psy8681 163 -KYGDRAGI---------------------------------------------------EDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 163 -~~~~~~~~---------------------------------------------------~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..++.++. ...-++...+....++.|..
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 00000000 00001111233456777888
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-------hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-------AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-------~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.|..++.+. ... ..+......+-..|.. ..+.+. ...-|..|.- | .......+..+...++.
T Consensus 246 ~y~~a~el~-~~i--t~~~n~aA~~~e~~~~~~c~~~c~~a~E~-gre~rad~kl-I------ak~~~r~g~a~~k~~~~ 314 (539)
T KOG0548|consen 246 HYAKALELA-TDI--TYLNNIAAVYLERGKYAECIELCEKAVEV-GRELRADYKL-I------AKALARLGNAYTKREDY 314 (539)
T ss_pred HHHHHHhHh-hhh--HHHHHHHHHHHhccHHHHhhcchHHHHHH-hHHHHHHHHH-H------HHHHHHhhhhhhhHHhH
Confidence 888888776 433 2333332222222322 221111 0001111111 0 01111233344455677
Q ss_pred HHHHHHHHHHHHcCCc--hh-----------------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 264 DLIRETYERAIANIPP--TK-----------------------------FAELESLLGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~--~~-----------------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
+.++..|++++...-. .. -+.-....|++..|...|..||...|.+ .
T Consensus 315 ~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~D--a 392 (539)
T KOG0548|consen 315 EGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPED--A 392 (539)
T ss_pred HHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCch--h
Confidence 8888888888764322 11 1222346799999999999999987754 5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.++..-.-.+...|++..|..-.+.++++.| ..+.|+.=+..+....+ ++.|...|+.|++..|++
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~---ydkAleay~eale~dp~~ 459 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKE---YDKALEAYQEALELDPSN 459 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCchh
Confidence 6777777778899999999999999999987 58899887777777666 999999999999999876
No 96
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.79 E-value=2.1e-05 Score=78.44 Aligned_cols=285 Identities=16% Similarity=0.111 Sum_probs=198.4
Q ss_pred hhhhhH-HHHHH---HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChh
Q psy8681 54 KLLEKA-KAWKK---AMEEKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 54 ~~lP~~-~~W~~---~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~ 127 (521)
...|.. ..|+. ..-.+..-.++-+++|+ |+|..|..+ .+.- ...+. .-.++.-+..--+.|+.+
T Consensus 66 ~~~~~~~~~w~~~rKrrra~~~~~egl~~l~e--------G~~~qAEkl~~rna--e~~e~p~l~~l~aA~AA~qrgd~~ 135 (400)
T COG3071 66 LRTPAHTRGWFSRRKRRRARKALNEGLLKLFE--------GDFQQAEKLLRRNA--EHGEQPVLAYLLAAEAAQQRGDED 135 (400)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHhh--hcCcchHHHHHHHHHHHHhcccHH
Confidence 356777 88876 22222223455677777 888888888 8876 66663 556777777777888888
Q ss_pred HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHH
Q psy8681 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEI 207 (521)
Q Consensus 128 ~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l 207 (521)
.+-....++-+.-|+ ..-.+.+.-+......+ ++..|+.-...++...|.+. .+
T Consensus 136 ~an~yL~eaae~~~~--~~l~v~ltrarlll~~~----------------------d~~aA~~~v~~ll~~~pr~~--~v 189 (400)
T COG3071 136 RANRYLAEAAELAGD--DTLAVELTRARLLLNRR----------------------DYPAARENVDQLLEMTPRHP--EV 189 (400)
T ss_pred HHHHHHHHHhccCCC--chHHHHHHHHHHHHhCC----------------------CchhHHHHHHHHHHhCcCCh--HH
Confidence 888888888776432 23344555566666665 77777777777777766655 34
Q ss_pred HHHHHHHHHHcCChhhHHHHHH--hh------------HHHHHHHH----------------HhhCC----CCHHHHHHH
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIV--SK------------RKFQYEEE----------------VNSNP----NNYDAWFDY 253 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~--~k------------rr~~ye~a----------------l~~~P----~~~~~W~~y 253 (521)
...........|+...+..++. .| ....++-. .+.-| +++.+-..|
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~ 269 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHH
Confidence 4434444444454444333220 00 01112211 11122 456777788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHH--HHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTKFAELE--SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le--~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
+..+.+.|+.++|..+.+.+++..-+..+..+. ...++...=.+..+.++...|.+ +.++...+.++.+++.+.+|
T Consensus 270 a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 270 AERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHH
Confidence 888899999999999999999864333233332 24578888888899999877654 48999999999999999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 332 RELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 332 r~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
...|+.++...|+...|...+..+...|. ...|-++++.++...-
T Consensus 348 ~~~leaAl~~~~s~~~~~~la~~~~~~g~---~~~A~~~r~e~L~~~~ 392 (400)
T COG3071 348 SEALEAALKLRPSASDYAELADALDQLGE---PEEAEQVRREALLLTR 392 (400)
T ss_pred HHHHHHHHhcCCChhhHHHHHHHHHHcCC---hHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998 9999999999996543
No 97
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.78 E-value=6.2e-07 Score=98.86 Aligned_cols=159 Identities=11% Similarity=0.116 Sum_probs=127.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHH
Q psy8681 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYA 195 (521)
Q Consensus 116 ~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~a 195 (521)
.-.....++.+..+...+-+++.....-+..+.....++..+.+.| .+++|..+++.+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g----------------------~~~ea~~~l~~~ 112 (694)
T PRK15179 55 ARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEAAH----------------------RSDEGLAVWRGI 112 (694)
T ss_pred HHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHHcC----------------------CcHHHHHHHHHH
Confidence 3344445555555555555555543322345777888888888887 899999999999
Q ss_pred HhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 196 L~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
++..|.+. ..+..++...++.+..+.|... +++++...|+++...+.++..+.+.|+.++|..+|++++.
T Consensus 113 ~~~~Pd~~--~a~~~~a~~L~~~~~~eeA~~~--------~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 113 HQRFPDSS--EAFILMLRGVKRQQGIEAGRAE--------IELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred HhhCCCcH--HHHHHHHHHHHHhccHHHHHHH--------HHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 99999887 7888888888888988888766 9999999999999999999999999999999999999998
Q ss_pred cCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 276 NIPPTK-----FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 276 ~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
..|... ++.+....|+.+.|...|++|+...
T Consensus 183 ~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 183 QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 777654 7888888999999999999998843
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.77 E-value=2.2e-07 Score=87.15 Aligned_cols=44 Identities=9% Similarity=0.057 Sum_probs=21.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|++++..+|.+..+++.++..+...|++++|...|++++...|+
T Consensus 133 l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 133 IDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 44444444444455555555555555555555555555444443
No 99
>KOG4162|consensus
Probab=98.76 E-value=4.1e-06 Score=89.38 Aligned_cols=131 Identities=18% Similarity=0.177 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~ 321 (521)
..+|...+.+....+..++|+..+..|-.++|.+. -+.+....|....|...|..|+..+|.+ ...-.+.+..
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h--v~s~~Ala~~ 727 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH--VPSMTALAEL 727 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC--cHHHHHHHHH
Confidence 35788888888899999999999999999999876 2456778899999999999999977754 3466777778
Q ss_pred HHhcCChHHHHH--HHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 322 EVGQGERDKVRE--LHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 322 e~~~g~~~~Ar~--l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+.+.|+-.-|.. +...+++..| +++.|..++......|+ .+.|-..|.-|++.-+.+|
T Consensus 728 lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd---~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 728 LLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGD---SKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccc---hHHHHHHHHHHHhhccCCC
Confidence 888887666555 9999999997 79999999999999999 9999999999999877665
No 100
>KOG3060|consensus
Probab=98.76 E-value=3.4e-06 Score=79.30 Aligned_cols=177 Identities=16% Similarity=0.100 Sum_probs=128.0
Q ss_pred hhhHHHHHHHH---HHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFE---EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e---~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
.+.|..|-... ...|..+-|..++.+....+| .+..+-.-.|.+.+..+ .++
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp---~S~RV~~lkam~lEa~~----------------------~~~ 103 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP---GSKRVGKLKAMLLEATG----------------------NYK 103 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC---CChhHHHHHHHHHHHhh----------------------chh
Confidence 35565555443 346788888888888888776 35666666777777777 889
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
.|.++|+..|+-+|.+. .++..-+.+.+..|....+..- ...-+..+|.|.++|..++.++...|+++.|
T Consensus 104 ~A~e~y~~lL~ddpt~~--v~~KRKlAilka~GK~l~aIk~--------ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 104 EAIEYYESLLEDDPTDT--VIRKRKLAILKAQGKNLEAIKE--------LNEYLDKFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred hHHHHHHHHhccCcchh--HHHHHHHHHHHHcCCcHHHHHH--------HHHHHHHhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 99999999999999887 6777777778888876666544 7777888999999999999999988888888
Q ss_pred HHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc---CChHHHHHHHHHHHhcCC
Q psy8681 267 RETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ---GERDKVRELHERLLERTV 343 (521)
Q Consensus 267 r~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~---g~~~~Ar~l~eral~~~~ 343 (521)
.-+|+..+-..|.++ .....|.+...-. .++..||++|.++|+++|
T Consensus 174 ~fClEE~ll~~P~n~-------------------------------l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNP-------------------------------LYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHcCCCcH-------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 888888887777543 2333344333222 356777788888888776
Q ss_pred -CHHHHHHHH
Q psy8681 344 -HVKVWMNYA 352 (521)
Q Consensus 344 -~~~vwi~ya 352 (521)
+...|....
T Consensus 223 ~~~ral~GI~ 232 (289)
T KOG3060|consen 223 KNLRALFGIY 232 (289)
T ss_pred HhHHHHHHHH
Confidence 444454433
No 101
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.76 E-value=3.3e-07 Score=81.48 Aligned_cols=123 Identities=15% Similarity=-0.076 Sum_probs=107.6
Q ss_pred HH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHH
Q psy8681 97 ED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV 175 (521)
Q Consensus 97 ~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l 175 (521)
.+ ++++ ...|+. |..++......|+++.|...|.+++...| .+..+|..++......|
T Consensus 14 ~~~~~al--~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g-------------- 72 (144)
T PRK15359 14 DILKQLL--SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQP---WSWRAHIALAGTWMMLK-------------- 72 (144)
T ss_pred HHHHHHH--HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHHh--------------
Confidence 45 7888 777753 66788899999999999999999999854 57889999999998888
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 176 ~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
+++.|...|++++...|.+. ..|..++......|+.+.|... |++++..+|.++..|...+.
T Consensus 73 --------~~~~A~~~y~~Al~l~p~~~--~a~~~lg~~l~~~g~~~eAi~~--------~~~Al~~~p~~~~~~~~~~~ 134 (144)
T PRK15359 73 --------EYTTAINFYGHALMLDASHP--EPVYQTGVCLKMMGEPGLAREA--------FQTAIKMSYADASWSEIRQN 134 (144)
T ss_pred --------hHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999887 7888888888899999999877 99999999999999987776
Q ss_pred HHH
Q psy8681 256 LLE 258 (521)
Q Consensus 256 ~~~ 258 (521)
...
T Consensus 135 ~~~ 137 (144)
T PRK15359 135 AQI 137 (144)
T ss_pred HHH
Confidence 654
No 102
>KOG2376|consensus
Probab=98.76 E-value=2.5e-05 Score=81.33 Aligned_cols=137 Identities=18% Similarity=0.170 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-------CCHHHHHHHHHH-HHHcCCchhhHHHHHHHHHHHHHhccchh-h
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERT-------VHVKVWMNYAQF-EMSSGDEDSVSLARRVFERANQALKASSE-K 384 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~-------~~~~vwi~ya~~-e~~~g~~~~~~~AR~vferAl~~~~~~~~-~ 384 (521)
+-...+++.+.+|++..|..++...+... .|.+.-+.++.+ ..+.++ .+.|-+++..|+.....+.. +
T Consensus 378 v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~---~~~a~~vl~~Ai~~~~~~~t~s 454 (652)
T KOG2376|consen 378 VLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKD---NDSASAVLDSAIKWWRKQQTGS 454 (652)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccC---CccHHHHHHHHHHHHHHhcccc
Confidence 33444444555666666666666322110 122222222222 223333 56677777777766544311 2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhCch----hhh--hhhc-----ccccCCCCCCeeEEEEeecCCcccCCCcHH
Q psy8681 385 EERVMLLEAWKEFEAQHGDDESRAKLNSKLPR----RAK--KRVK-----TYNDEGVEEGWEEVFDYIFPEDEAAKPNLK 453 (521)
Q Consensus 385 ~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~----~v~--krr~-----~~~~~~~~~~~~e~~d~if~e~~~~~~~~~ 453 (521)
.....+|.....|+.++|+.+++..+++.+-+ ... -++. +.++ .-+.+--+++|+......++.
T Consensus 455 ~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~d~e-----ka~~l~k~L~p~~~l~~vdVd 529 (652)
T KOG2376|consen 455 IALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARLDPE-----KAESLSKKLPPLKGLKAVDVD 529 (652)
T ss_pred hHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhcCHH-----HHHHHhhcCCCcccchhcCch
Confidence 33456777778899999999887766655522 110 0000 1111 235566788888765444445
Q ss_pred HHHHH
Q psy8681 454 LLEKA 458 (521)
Q Consensus 454 ~~~~a 458 (521)
=|+.+
T Consensus 530 ~LE~s 534 (652)
T KOG2376|consen 530 ALEKS 534 (652)
T ss_pred Hhhhc
Confidence 55543
No 103
>KOG1156|consensus
Probab=98.74 E-value=5.3e-06 Score=87.02 Aligned_cols=251 Identities=11% Similarity=0.097 Sum_probs=187.5
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
.++|.....+ +..+ ..+| .+++....|-.+...|+.++|-..-..++.. ++.++-.|..|+-+...-+
T Consensus 20 ~kQYkkgLK~~~~iL--~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK----- 89 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQIL--KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDK----- 89 (700)
T ss_pred HHHHHhHHHHHHHHH--HhCCccchhHHhccchhhcccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhh-----
Confidence 4778888999 9999 9999 6899999999999999999999999999986 4456788999998888777
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
+|++|+..|..||...|.+. .+|..+.-+..+.|+.+....+ -.+.+...|..
T Consensus 90 -----------------~Y~eaiKcy~nAl~~~~dN~--qilrDlslLQ~QmRd~~~~~~t--------r~~LLql~~~~ 142 (700)
T KOG1156|consen 90 -----------------KYDEAIKCYRNALKIEKDNL--QILRDLSLLQIQMRDYEGYLET--------RNQLLQLRPSQ 142 (700)
T ss_pred -----------------hHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHhhhhHHHH--------HHHHHHhhhhh
Confidence 99999999999999999987 8999999999999998887766 67778889999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---Cchh-H---------HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANI---PPTK-F---------AELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~---P~~~-~---------a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
-..|+.++....-.|+...|..+.+.-.+.. |... | .......|.++.|......--... .+ ...
T Consensus 143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~D-kla 220 (700)
T KOG1156|consen 143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VD-KLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HH-HHH
Confidence 9999999999999999999988888776654 3332 2 122335577666666554321110 01 123
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEM-SSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~-~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+-..-++++...|++++|..+|..++..+|+ ..-+..+-.... -.+. ...-..+|...-+..|..
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~---~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDM---LEALKALYAILSEKYPRH 287 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhh---HHHHHHHHHHHhhcCccc
Confidence 3444567888999999999999999999874 444433333332 1122 333346666666555543
No 104
>KOG3060|consensus
Probab=98.74 E-value=3.3e-06 Score=79.38 Aligned_cols=157 Identities=16% Similarity=0.207 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
..+-|..+++.....+|.+. .+-..++-+....|+...|.++ |+..|..+|.|..++-.-+......|..
T Consensus 67 ~~~lAq~C~~~L~~~fp~S~--RV~~lkam~lEa~~~~~~A~e~--------y~~lL~ddpt~~v~~KRKlAilka~GK~ 136 (289)
T KOG3060|consen 67 RDDLAQKCINQLRDRFPGSK--RVGKLKAMLLEATGNYKEAIEY--------YESLLEDDPTDTVIRKRKLAILKAQGKN 136 (289)
T ss_pred chHHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhchhhHHHH--------HHHHhccCcchhHHHHHHHHHHHHcCCc
Confidence 56677777777777788776 5666666666677777777766 8888888888877777666666666655
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
-.|+.-+..-+..+| . +..+|....+++...|.+.+|.-+|+.++-..|
T Consensus 137 l~aIk~ln~YL~~F~-----------------------------~--D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 137 LEAIKELNEYLDKFM-----------------------------N--DQEAWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHHHHHHhc-----------------------------C--cHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 555555444333333 2 357999999999999999999999999999999
Q ss_pred C-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 344 H-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 344 ~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+ +-.+..|+......|.-+++.-||+.|.+|++.+|.+
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 5 5567779999998887778999999999999999854
No 105
>KOG4162|consensus
Probab=98.69 E-value=3.4e-05 Score=82.55 Aligned_cols=117 Identities=17% Similarity=0.085 Sum_probs=75.2
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHH
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSL 366 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~ 366 (521)
..++.+.|+.....|-...+. ...+|..-+......|...+|...|..++...| |+..-.++|..+...|+ .....
T Consensus 662 ~~~~~~~a~~CL~Ea~~~~~l--~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~-~~la~ 738 (799)
T KOG4162|consen 662 LSGNDDEARSCLLEASKIDPL--SASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS-PRLAE 738 (799)
T ss_pred hcCCchHHHHHHHHHHhcchh--hHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-cchHH
Confidence 334444444444444333322 123333333444456777778888888888776 67788888888888775 44666
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhh
Q psy8681 367 ARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK 413 (521)
Q Consensus 367 AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~ 413 (521)
+|.++..|+...|.+. ..|......-+..|+.+.+..+..-
T Consensus 739 ~~~~L~dalr~dp~n~------eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 739 KRSLLSDALRLDPLNH------EAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHHHHHHhhCCCCH------HHHHHHHHHHHHccchHHHHHHHHH
Confidence 6778888888888874 4666666666688998877766543
No 106
>KOG3617|consensus
Probab=98.67 E-value=2e-05 Score=84.39 Aligned_cols=330 Identities=17% Similarity=0.148 Sum_probs=190.0
Q ss_pred CchhhhhhHHHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH---HhhhccCCCCChhhHHHHHHHHHHcCC
Q psy8681 51 PNLKLLEKAKAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEED---ERKDEGDRDSDTTYGMRELVFEEQNGF 125 (521)
Q Consensus 51 rai~~lP~~~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~---eral~~~~~P~~~~W~~~a~~e~~~g~ 125 (521)
++|+......+|-. .|.-....++-|.-++ |+...||.. +++. ..|+ ..=.+.+-+-...|-
T Consensus 749 ksI~~IkS~~vW~nmA~McVkT~RLDVAkVCl---------Ghm~~aRgaRAlR~a~---q~~~-e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 749 KSIQFIKSDSVWDNMASMCVKTRRLDVAKVCL---------GHMKNARGARALRRAQ---QNGE-EDEAKVAVLAIELGM 815 (1416)
T ss_pred HHHHHHhhhHHHHHHHHHhhhhccccHHHHhh---------hhhhhhhhHHHHHHHH---hCCc-chhhHHHHHHHHHhh
Confidence 55554433377876 7777767777766554 556655554 4444 3342 333455666677788
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh-hhccccchhhHHHHHhh--hhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR-EKYGDRAGIEDVIVSKR--KFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~-~~~~~~~~~~~~~l~~~--~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
+++|..+|.++-... .-..++.+.+.|.+... +...+-..+.++|-..+ +...++++.|.+.|+++=. |.
T Consensus 816 lEeA~~lYr~ckR~D----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~--ha- 888 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYD----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV--HA- 888 (1416)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC--hH-
Confidence 889999998886541 00122222222222111 00000000111111100 0011244555555554321 11
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~- 281 (521)
..+...+.. +...+ ++-+. --.+..+|.-++.++++.|+.+.|...|..|-..+....
T Consensus 889 --fev~rmL~e------~p~~~------------e~Yv~-~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI 947 (1416)
T KOG3617|consen 889 --FEVFRMLKE------YPKQI------------EQYVR-RKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRI 947 (1416)
T ss_pred --HHHHHHHHh------ChHHH------------HHHHH-hccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheee
Confidence 112222111 01111 11111 124568899999999999999999999999865432211
Q ss_pred -------------------------HHHHHHHcCCHHHHHHHHHHHHc------CC-CCCCcHHHHHHHH----------
Q psy8681 282 -------------------------FAELESLLGDMERARAIYELAIS------QP-RLDMPELVWKAYI---------- 319 (521)
Q Consensus 282 -------------------------~a~le~~~g~~e~Ar~ife~al~------~~-~~~~~~~lw~~yi---------- 319 (521)
++..++..|++.+|...|.+|-. .+ ..++...+|+...
T Consensus 948 ~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~a 1027 (1416)
T KOG3617|consen 948 KCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSA 1027 (1416)
T ss_pred EeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHH
Confidence 57889999999999998887743 11 2334456665422
Q ss_pred -HHHHhc-CChHHHHHHHHHH------Hhc-------------------CCCHHHHHHHHHHHHHcCCchhhHHHHHH--
Q psy8681 320 -DFEVGQ-GERDKVRELHERL------LER-------------------TVHVKVWMNYAQFEMSSGDEDSVSLARRV-- 370 (521)
Q Consensus 320 -~~e~~~-g~~~~Ar~l~era------l~~-------------------~~~~~vwi~ya~~e~~~g~~~~~~~AR~v-- 370 (521)
.++... |..++|..+|.++ |+. ..++++....+.|...+.+ +++|..+
T Consensus 1028 ArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~q---yekAV~lL~ 1104 (1416)
T KOG3617|consen 1028 ARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQ---YEKAVNLLC 1104 (1416)
T ss_pred HHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHH---HHHHHHHHH
Confidence 223333 4788888888764 211 1368888888888887765 8887665
Q ss_pred ----HHHHHHHhccchh-------------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhhhhhcc
Q psy8681 371 ----FERANQALKASSE-------------------KEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKT 424 (521)
Q Consensus 371 ----ferAl~~~~~~~~-------------------~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~krr~~ 424 (521)
|++|+..|...+. ...|..+++...+|-.+.|+...+.+-....-.+++.=|.+
T Consensus 1105 ~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraL 1181 (1416)
T KOG3617|consen 1105 LAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRAL 1181 (1416)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHH
Confidence 7888888765421 35789999999999999999998877777777776554443
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.63 E-value=8.2e-06 Score=91.07 Aligned_cols=252 Identities=10% Similarity=0.065 Sum_probs=125.5
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| +...|..++..+...+++++|..+.+.+++..|+ ...+|+..+-+..+.+ .+.+..-+ -+........
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~---~i~~yy~~G~l~~q~~-~~~~~~lv---~~l~~~~~~~ 97 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK---SISALYISGILSLSRR-PLNDSNLL---NLIDSFSQNL 97 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc---ceehHHHHHHHHHhhc-chhhhhhh---hhhhhccccc
Confidence 3346 5889999999999999999999999999998764 4556666655555444 01100000 0000000001
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.+.-...+|...+ ..|.+. .+...++..+.+.|..+.+..+ |+++|..+|+|+.+-..|+-++... +.
T Consensus 98 ~~~~ve~~~~~i~-~~~~~k--~Al~~LA~~Ydk~g~~~ka~~~--------yer~L~~D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 98 KWAIVEHICDKIL-LYGENK--LALRTLAEAYAKLNENKKLKGV--------WERLVKADRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred chhHHHHHHHHHH-hhhhhh--HHHHHHHHHHHHcCChHHHHHH--------HHHHHhcCcccHHHHHHHHHHHHHh-hH
Confidence 2211222222222 233333 3444444444555555555544 5555555555555555555555555 55
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT- 342 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~- 342 (521)
++|...+.+|+... .....+..+. .+|..|+... .-+++.-..+.++.+...
T Consensus 166 ~KA~~m~~KAV~~~---------i~~kq~~~~~----------------e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 166 EKAITYLKKAIYRF---------IKKKQYVGIE----------------EIWSKLVHYN--SDDFDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHHHHHH---------HhhhcchHHH----------------HHHHHHHhcC--cccchHHHHHHHHHHhhhc
Confidence 55555555555431 1112333333 3444444221 112222222222222221
Q ss_pred --CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 343 --VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 343 --~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
.-+.+|.-+-..+....+ ++.+..+|..++++.|+|. ..+..|...|. ..|++...++..
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~---~~~~i~iLK~iL~~~~~n~--~a~~~l~~~y~---~kY~~~~~~ee~ 280 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALED---WDEVIYILKKILEHDNKNN--KAREELIRFYK---EKYKDHSLLEDY 280 (906)
T ss_pred cchhHHHHHHHHHHHhhhhh---hhHHHHHHHHHHhcCCcch--hhHHHHHHHHH---HHccCcchHHHH
Confidence 123444444444444444 7788888888888877653 34566666666 355554444443
No 108
>KOG0624|consensus
Probab=98.60 E-value=7.4e-05 Score=73.15 Aligned_cols=275 Identities=13% Similarity=0.049 Sum_probs=193.5
Q ss_pred HhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc
Q psy8681 68 EKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL 145 (521)
Q Consensus 68 ~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~ 145 (521)
++.++...+.+-++--...+..|.+..|... -.+| ...| +......-+..+...|...-|..-+.+.|++-|+
T Consensus 30 ~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpD--- 104 (504)
T KOG0624|consen 30 ESTASPADVEKHLELGKELLARGQLSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPD--- 104 (504)
T ss_pred HhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCcc---
Confidence 3445544444444311114456788889888 8999 8899 6788888888898999989999999999988552
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-HHH----------HHHHHHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEI----------YKAYTIH 214 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~~l----------~~~~~~~ 214 (521)
....-+.-+.....+| ++++|..-|.+.|+..|.+.. ... |..--.+
T Consensus 105 F~~ARiQRg~vllK~G----------------------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql 162 (504)
T KOG0624|consen 105 FMAARIQRGVVLLKQG----------------------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQL 162 (504)
T ss_pred HHHHHHHhchhhhhcc----------------------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHH
Confidence 2222233344555555 999999999999999995431 111 2211111
Q ss_pred HH--HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHH
Q psy8681 215 EK--KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELES 287 (521)
Q Consensus 215 e~--~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~ 287 (521)
.. -.|+...++.. ....|...|-+..++..-+..+...|++..|+.-+..+-+...++. .+.|+.
T Consensus 163 ~s~~~~GD~~~ai~~--------i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y 234 (504)
T KOG0624|consen 163 KSASGSGDCQNAIEM--------ITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLY 234 (504)
T ss_pred HHHhcCCchhhHHHH--------HHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 11 23677777766 7888999999999999999999999999999999988877655544 578889
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH------------HHHhcCChHHHHHHHHHHHhcCCC-HHHHHH----
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYID------------FEVGQGERDKVRELHERLLERTVH-VKVWMN---- 350 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~------------~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~---- 350 (521)
..|+.+.+......++..+|.. ..-+-.|-. -.++.+++..+.+.++..++..|. +.+-+.
T Consensus 235 ~vgd~~~sL~~iRECLKldpdH--K~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~ 312 (504)
T KOG0624|consen 235 TVGDAENSLKEIRECLKLDPDH--KLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRV 312 (504)
T ss_pred hhhhHHHHHHHHHHHHccCcch--hhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeehe
Confidence 9999999999999999965532 112221211 134578899999999999998875 333222
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 351 YAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 351 ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
...+... ++++-+|.+...+++...|++.
T Consensus 313 ~c~C~~~---d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 313 LCTCYRE---DEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred eeecccc---cCCHHHHHHHHHHHHhcCchHH
Confidence 2222222 3459999999999999998864
No 109
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.59 E-value=5.7e-05 Score=80.66 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
++.+-.+.+....|++++|..+++..-..+. +...+...-|.+....| .+++|..
T Consensus 5 E~lLY~~~il~e~g~~~~AL~~L~~~~~~I~---Dk~~~~E~rA~ll~kLg----------------------~~~eA~~ 59 (517)
T PF12569_consen 5 ELLLYKNSILEEAGDYEEALEHLEKNEKQIL---DKLAVLEKRAELLLKLG----------------------RKEEAEK 59 (517)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhhhhhCC---CHHHHHHHHHHHHHHcC----------------------CHHHHHH
Confidence 3444455566666677776666666555432 12334444555555555 6667777
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIH 214 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~ 214 (521)
+|...|+.+|.+. ..|..|...
T Consensus 60 ~y~~Li~rNPdn~--~Yy~~L~~~ 81 (517)
T PF12569_consen 60 IYRELIDRNPDNY--DYYRGLEEA 81 (517)
T ss_pred HHHHHHHHCCCcH--HHHHHHHHH
Confidence 7777777777665 445544443
No 110
>KOG1128|consensus
Probab=98.57 E-value=2.8e-06 Score=90.21 Aligned_cols=198 Identities=12% Similarity=0.062 Sum_probs=117.9
Q ss_pred HHHHhcCChhhhhhhcCCCcH-------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANKENEE-------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERA 136 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~P~~-------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~A 136 (521)
.+..++|-...|..||++|.- +...|.-..|-.+ .+-+ ...|++.+|..+|++... -.+|++|
T Consensus 406 ell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~l--ek~~d~~lyc~LGDv~~d-------~s~yEka 476 (777)
T KOG1128|consen 406 ELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQEL--EKDPDPRLYCLLGDVLHD-------PSLYEKA 476 (777)
T ss_pred HHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHh--cCCCcchhHHHhhhhccC-------hHHHHHH
Confidence 444566666666666663322 5555555555555 5555 533455555555544422 2344444
Q ss_pred HHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 137 VEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 137 l~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
.+... ..++.+-..++....+. ++++.+-..++.+++..|... ..|..++...-
T Consensus 477 wElsn--~~sarA~r~~~~~~~~~----------------------~~fs~~~~hle~sl~~nplq~--~~wf~~G~~AL 530 (777)
T KOG1128|consen 477 WELSN--YISARAQRSLALLILSN----------------------KDFSEADKHLERSLEINPLQL--GTWFGLGCAAL 530 (777)
T ss_pred HHHhh--hhhHHHHHhhccccccc----------------------hhHHHHHHHHHHHhhcCccch--hHHHhccHHHH
Confidence 44321 01112112222222222 377777777888887777765 67777766666
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCC
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD 291 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~ 291 (521)
+.++...+... |.+++...|.+...|.++...+...|...+|...+.+|++.+-.+- |..+-...|+
T Consensus 531 qlek~q~av~a--------F~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 531 QLEKEQAAVKA--------FHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred HHhhhHHHHHH--------HHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhccc
Confidence 66666666544 7788888888888888888888777777778888888777652211 5556666777
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 292 MERARAIYELAISQ 305 (521)
Q Consensus 292 ~e~Ar~ife~al~~ 305 (521)
++.|.++|.+.+..
T Consensus 603 ~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHHHHHHHHh
Confidence 77777777777663
No 111
>KOG1128|consensus
Probab=98.56 E-value=1.7e-06 Score=91.74 Aligned_cols=188 Identities=15% Similarity=0.155 Sum_probs=133.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..|-..+.+|...|.-.+|..+..+-++. ++++.+|..++++..... -++.|-.
T Consensus 425 emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d~~lyc~LGDv~~d~s----------------------~yEkawE 478 (777)
T KOG1128|consen 425 EMWDPVILCYLLLGQHGKAEEINRQELEK----DPDPRLYCLLGDVLHDPS----------------------LYEKAWE 478 (777)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCcchhHHHhhhhccChH----------------------HHHHHHH
Confidence 45666666666666555555555555552 124555555555543332 3344433
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+++..-. .....++..-...++++.+... ++..+..+|-....|+.++-...+.++...|...|
T Consensus 479 lsn~~sa--------rA~r~~~~~~~~~~~fs~~~~h--------le~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF 542 (777)
T KOG1128|consen 479 LSNYISA--------RAQRSLALLILSNKDFSEADKH--------LERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAF 542 (777)
T ss_pred HhhhhhH--------HHHHhhccccccchhHHHHHHH--------HHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHH
Confidence 3333211 1112222222334566666544 99999999999999999999999999999999999
Q ss_pred HHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 271 ERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 271 erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+++...|++. ++..+..+|...+|...+..|++.+. .+..+|..|.......|+++.|..+|.+.+...
T Consensus 543 ~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 543 HRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--CCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 99999999876 56667889999999999999999652 245799999999999999999999999999864
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.51 E-value=2.1e-06 Score=74.98 Aligned_cols=86 Identities=12% Similarity=0.130 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|+.++...|.+. .+|..++.+....|+.+.+... |++++..+|.++..|..++.++...|+.
T Consensus 32 ~~~~A~~~~~~~~~~~p~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 32 RYDEALKLFQLLAAYDPYNS--RYWLGLAACCQMLKEYEEAIDA--------YALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred cHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 55555555555555555543 4555555555555555554443 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
+.|...|++++...|.
T Consensus 102 ~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 102 ESALKALDLAIEICGE 117 (135)
T ss_pred HHHHHHHHHHHHhccc
Confidence 5555555555555554
No 113
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.50 E-value=0.00033 Score=74.85 Aligned_cols=267 Identities=13% Similarity=0.124 Sum_probs=168.9
Q ss_pred HHH-HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc
Q psy8681 62 WKK-AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN 123 (521)
Q Consensus 62 W~~-~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~ 123 (521)
-|+ .+....|+++.|...++ -++. ++++|++++|..+ ...| ..+| +...+..+.......
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li--~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELI--DRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHhhh
Confidence 345 66778899999999988 1332 7788999999999 9999 8888 566666666655222
Q ss_pred -----CChhHHHHHHHHHHHhcCCc---------cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh-hhh-hhhHHH
Q psy8681 124 -----GFVSGARKVYERAVEFFGEE---------NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR-KFQ-YEEHER 187 (521)
Q Consensus 124 -----g~~~~Ar~vye~Al~~~~~~---------~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~-~~~-~~~~e~ 187 (521)
.+.+....+|+..-..+|.- .....-+...+.-..... .-. +++..|-.-. ++. ......
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~-l~K---gvPslF~~lk~Ly~d~~K~~~ 161 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQ-LRK---GVPSLFSNLKPLYKDPEKAAI 161 (517)
T ss_pred cccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHH-Hhc---CCchHHHHHHHHHcChhHHHH
Confidence 24567777888776655521 111111111111110000 000 1222211110 111 011112
Q ss_pred HHHHHHH---HHhcC---C-------hhhHHHHHHHH--HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH
Q psy8681 188 ARVIYKY---ALDHI---P-------KDRTAEIYKAY--TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD 252 (521)
Q Consensus 188 Ar~iy~~---aL~~~---P-------~~~~~~l~~~~--~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~ 252 (521)
...++.. .++.. + ......+|..| ++.....|+.+.|... .+++|...|..+++++.
T Consensus 162 i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~--------Id~aI~htPt~~ely~~ 233 (517)
T PF12569_consen 162 IESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEY--------IDKAIEHTPTLVELYMT 233 (517)
T ss_pred HHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHH--------HHHHHhcCCCcHHHHHH
Confidence 2222222 22111 0 11223578766 5667788999998877 89999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC--CC-C--cHHHHH--HHHH
Q psy8681 253 YLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR--LD-M--PELVWK--AYID 320 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~--~~-~--~~~lw~--~yi~ 320 (521)
-++++...|++.+|-..++.|-...+.+- .+....+.|.++.|..++..-..... .. . ...+|. ..+.
T Consensus 234 KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~ 313 (517)
T PF12569_consen 234 KARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAE 313 (517)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988766 45667789999999999888766431 11 0 023453 2345
Q ss_pred HHHhcCChHHHHHHHHHHHhcC
Q psy8681 321 FEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+.+.|++..|.+-|...++.+
T Consensus 314 a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 314 AYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHHHhhHHHHHHHHHHHHHHH
Confidence 5678899999999999888763
No 114
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.50 E-value=4.6e-06 Score=72.84 Aligned_cols=112 Identities=13% Similarity=0.057 Sum_probs=59.0
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
.|++++...|.+. .....++......|+...+... |+.++..+|.+..+|..++.++...|++++|..+|
T Consensus 5 ~~~~~l~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~ 74 (135)
T TIGR02552 5 TLKDLLGLDSEQL--EQIYALAYNLYQQGRYDEALKL--------FQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAY 74 (135)
T ss_pred hHHHHHcCChhhH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555443 3333444444445555555443 55555555555555555555555555555555555
Q ss_pred HHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 271 ERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 271 erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++++...|.+ ..+|..++.++...|+++.|...|+++++..|
T Consensus 75 ~~~~~~~p~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 75 ALAAALDPDD-------------------------------PRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred HHHHhcCCCC-------------------------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 5555554433 23444444455555555555555555555554
No 115
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.49 E-value=1.2e-05 Score=81.36 Aligned_cols=162 Identities=22% Similarity=0.275 Sum_probs=118.6
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
+|...|++.+..+|.|.++|+.|+.+.........-. + .....-.+...++|++|++..|.
T Consensus 3 ~r~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~----~-------------~~~~a~~E~klsilerAL~~np~-- 63 (321)
T PF08424_consen 3 KRTAELNRRVRENPHDIEAWLELIEFQDELFRLQSSS----K-------------AERRALAERKLSILERALKHNPD-- 63 (321)
T ss_pred hHHHHHHHHHHhCcccHHHHHHHHHHHHHhccccccc----h-------------hhHHHHHHHHHHHHHHHHHhCCC--
Confidence 4556799999999999999999999987653211110 0 00011234456688888886553
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh------
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE------ 383 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~------ 383 (521)
+..||..|+....+..+.+.....+++++..+| ++.+|..|..|.......-.+...+.+|.+++..+.....
T Consensus 64 ~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~ 143 (321)
T PF08424_consen 64 SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSH 143 (321)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccc
Confidence 578999999988888888999999999999887 6899999999988743222388999999999988754321
Q ss_pred ------hHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 384 ------KEERVMLLEAWKEFEAQHGDDESRAKLN 411 (521)
Q Consensus 384 ------~~~~~~l~~~~~~fE~~~G~~~~~~~v~ 411 (521)
....+.++..+..|....|-.+.+-.+.
T Consensus 144 ~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~ 177 (321)
T PF08424_consen 144 PDLPELEEFMLYVFLRLCRFLRQAGYTERAVALW 177 (321)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHH
Confidence 2345677777888999999987755444
No 116
>KOG1127|consensus
Probab=98.49 E-value=2.5e-05 Score=85.53 Aligned_cols=55 Identities=15% Similarity=-0.043 Sum_probs=47.7
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
++.-++...|..- +.++ ...| +..+|..++..|-..|.+..|.++|.+|..+.|.
T Consensus 572 yLea~n~h~aV~~fQsAL--R~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSAL--RTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred ccCccchhhHHHHHHHHh--cCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 5556677777777 8888 8899 8999999999999999999999999999988663
No 117
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.44 E-value=8.2e-06 Score=82.53 Aligned_cols=134 Identities=22% Similarity=0.295 Sum_probs=97.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc---
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE--- 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~--- 260 (521)
-.+.-..||++||+.+|.+. .|+..|+..-.+..+.+.+... +++++..+|+++.+|..|+.+....
T Consensus 46 ~~E~klsilerAL~~np~~~--~L~l~~l~~~~~~~~~~~l~~~--------we~~l~~~~~~~~LW~~yL~~~q~~~~~ 115 (321)
T PF08424_consen 46 LAERKLSILERALKHNPDSE--RLLLGYLEEGEKVWDSEKLAKK--------WEELLFKNPGSPELWREYLDFRQSNFAS 115 (321)
T ss_pred HHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHHHCCCChHHHHHHHHHHHHHhcc
Confidence 35677889999999999776 8999999887777777666654 9999999999999999999998873
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHcCC--HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 261 GNADLIRETYERAIANIPPTKFAELESLLGD--MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~--~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
..++.++.+|.+++....... .|. .......++.. ...+...+..|+.+.|..+.|..+++-.
T Consensus 116 f~v~~~~~~y~~~l~~L~~~~-------~~~~~~~~~~~~~e~~--------~l~v~~r~~~fl~~aG~~E~Ava~~Qa~ 180 (321)
T PF08424_consen 116 FTVSDVRDVYEKCLRALSRRR-------SGRMTSHPDLPELEEF--------MLYVFLRLCRFLRQAGYTERAVALWQAL 180 (321)
T ss_pred CcHHHHHHHHHHHHHHHHHhh-------ccccccccchhhHHHH--------HHHHHHHHHHHHHHCCchHHHHHHHHHH
Confidence 478999999999988643211 000 00000000000 1235666677888888888888888888
Q ss_pred HhcC
Q psy8681 339 LERT 342 (521)
Q Consensus 339 l~~~ 342 (521)
++.+
T Consensus 181 lE~n 184 (321)
T PF08424_consen 181 LEFN 184 (321)
T ss_pred HHHH
Confidence 8764
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.43 E-value=3.9e-05 Score=85.82 Aligned_cols=222 Identities=10% Similarity=0.103 Sum_probs=136.8
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.+.|+++.|..+ +.++ ..+| +...|...|-++.+.++++.+.-| .++..++.+... .+-..+. ...+ .
T Consensus 41 ~~~~~~~deai~i~~~~l--~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~-~~ve~~~---~~i~-~ 111 (906)
T PRK14720 41 YKSENLTDEAKDICEEHL--KEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKW-AIVEHIC---DKIL-L 111 (906)
T ss_pred HHhcCCHHHHHHHHHHHH--HhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccch-hHHHHHH---HHHH-h
Confidence 4466788888888 8999 9999 689999999999999998888888 788776643211 1111111 1111 0
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
++... .....++..+-+.|..++|..+|+++|+..|.+. .+.+.|+.+.... +.+.|..+ |.+|+..
T Consensus 112 ~~~~k-~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~--~aLNn~AY~~ae~-dL~KA~~m--------~~KAV~~- 178 (906)
T PRK14720 112 YGENK-LALRTLAEAYAKLNENKKLKGVWERLVKADRDNP--EIVKKLATSYEEE-DKEKAITY--------LKKAIYR- 178 (906)
T ss_pred hhhhh-HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHh-hHHHHHHH--------HHHHHHH-
Confidence 00000 0000112222233599999999999999999987 7777777776666 88888766 8888765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHHc-CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHH
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESLL-GDMERARAIYELAISQPRLDMPELVWKAYID 320 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~~-g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~ 320 (521)
+.....+..+..+.++.+...|.+. +..++... +... |.+++ .+|.-.-.
T Consensus 179 -------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~-----~~~~~---------~~~~~l~~ 231 (906)
T PRK14720 179 -------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHRE-----FTRLV---------GLLEDLYE 231 (906)
T ss_pred -------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhc-----cchhH---------HHHHHHHH
Confidence 3444567888888888888888754 22222211 1111 22222 12222223
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 321 FEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
.+...++++.+..+++.+|...| +......++.++.
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 33466778888888888888765 3444444444443
No 119
>KOG0548|consensus
Probab=98.38 E-value=0.0004 Score=71.87 Aligned_cols=262 Identities=12% Similarity=0.037 Sum_probs=167.3
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
+..|+++.|..+ -.+| .+.| +..++..-...+...|+++.|.+--.+++++.| ..+.-|...+......|
T Consensus 13 ~s~~d~~~ai~~~t~ai--~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p---~w~kgy~r~Gaa~~~lg--- 84 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAI--MLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNP---DWAKGYSRKGAALFGLG--- 84 (539)
T ss_pred cccccHHHHHHHHHHHH--ccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCC---chhhHHHHhHHHHHhcc---
Confidence 346889999999 9999 8998 788888888888899999999888888888865 46677777776666666
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-----------------CCh------
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-----------------GDR------ 221 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-----------------G~~------ 221 (521)
+|++|+..|..+|+..|.+. .|...+.+.+... ++.
T Consensus 85 -------------------~~~eA~~ay~~GL~~d~~n~--~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~ 143 (539)
T KOG0548|consen 85 -------------------DYEEAILAYSEGLEKDPSNK--QLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSL 143 (539)
T ss_pred -------------------cHHHHHHHHHHHhhcCCchH--HHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhh
Confidence 99999999999999999886 4554444332100 000
Q ss_pred -------------------------hhHHHHH------------------------------------------------
Q psy8681 222 -------------------------AGIEDVI------------------------------------------------ 228 (521)
Q Consensus 222 -------------------------~~a~~~i------------------------------------------------ 228 (521)
.....+.
T Consensus 144 ~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~ 223 (539)
T KOG0548|consen 144 SDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEK 223 (539)
T ss_pred ccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHh
Confidence 0000000
Q ss_pred ----------------HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------
Q psy8681 229 ----------------VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------- 281 (521)
Q Consensus 229 ----------------~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----------- 281 (521)
...+...|..++.++ .+.......+..+...|.....+.....|+...-...
T Consensus 224 a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 224 AHKEKELGNAAYKKKDFETAIQHYAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 000123344444444 4444444444444444444444444444433221110
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCC--CCc----------HHHHHHHHHH------------HHhcCChHHHHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRL--DMP----------ELVWKAYIDF------------EVGQGERDKVRELHE 336 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~--~~~----------~~lw~~yi~~------------e~~~g~~~~Ar~l~e 336 (521)
.+..+...|+++.|+..|.+++..... ... ..--..|++. ....|++..|...|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 222445568888888888888863211 000 0011112221 234688999999999
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 337 RLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 337 ral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.+|...| ++.++.+-+..+.++|. +..|.+-.+.+++..|+.
T Consensus 383 eAIkr~P~Da~lYsNRAac~~kL~~---~~~aL~Da~~~ieL~p~~ 425 (539)
T KOG0548|consen 383 EAIKRDPEDARLYSNRAACYLKLGE---YPEALKDAKKCIELDPNF 425 (539)
T ss_pred HHHhcCCchhHHHHHHHHHHHHHhh---HHHHHHHHHHHHhcCchH
Confidence 9999887 57788888888888888 888888888888887765
No 120
>KOG0550|consensus
Probab=98.37 E-value=2.9e-05 Score=77.71 Aligned_cols=268 Identities=13% Similarity=0.026 Sum_probs=176.9
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----cHHHHHHHHHHHHh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----DEKLFIAFAKFEEG 159 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~~~lw~~~a~~e~~ 159 (521)
......|.+|... ..+| ..+| ++..|..-+..++..|+++.|..-+.+.+++-+..+. -.......+.....
T Consensus 59 ~yk~k~Y~nal~~yt~Ai--~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAI--DMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHH--HhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 4455678889999 9999 9999 7889999999999999999999988888887442110 11222222222221
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH-HHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY-TIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~-~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
.. .+.+ .+......|..-++..+.......+..-|..+ +....-.|+..++.+. =-.
T Consensus 137 ~~-~~~~-------------~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~e--------a~~ 194 (486)
T KOG0550|consen 137 EE-KLKS-------------KQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSE--------AID 194 (486)
T ss_pred HH-Hhhh-------------hhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHH--------HHH
Confidence 11 0000 00000111111122211111100100111111 2333455777776654 445
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------------HHHHHHHcCCHHHHHHHHHH
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------------FAELESLLGDMERARAIYEL 301 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------------~a~le~~~g~~e~Ar~ife~ 301 (521)
.+..++.+.++...-+.++.-+++.+.+...|++++...|... -++--.+.|++..|-.+|..
T Consensus 195 ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 195 ILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred HHhcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 6677899988888888888888999999999999999999865 23334578999999999999
Q ss_pred HHcCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 302 AISQPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 302 al~~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
||..+|.+. ...++..-.....+.|+..+|+.-.+.++.+.+ ..+.++.-+......+. ++.|+.-|++|++.-
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~---~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEK---WEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhc
Confidence 999766432 234444445567788999999999999999986 57788888888777776 999999999999876
Q ss_pred cc
Q psy8681 379 KA 380 (521)
Q Consensus 379 ~~ 380 (521)
.+
T Consensus 352 ~s 353 (486)
T KOG0550|consen 352 KD 353 (486)
T ss_pred cc
Confidence 65
No 121
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.33 E-value=6.7e-05 Score=71.18 Aligned_cols=144 Identities=21% Similarity=0.262 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+-+.+..+...++...|.+. .+...++...-..|++..+... +.++....|++..+|..++-.+.+.|+.
T Consensus 81 ~a~~~l~~~~~~~~~~~~d~--~ll~~~gk~~~~~g~~~~A~~~--------~rkA~~l~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 81 DADSSLAVLQKSAIAYPKDR--ELLAAQGKNQIRNGNFGEAVSV--------LRKAARLAPTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred cccchHHHHhhhhccCcccH--HHHHHHHHHHHHhcchHHHHHH--------HHHHhccCCCChhhhhHHHHHHHHccCh
Confidence 33333444444444455554 5666688877888888888866 8889899999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
+.|+..|-+|++..|... ++.++.-.|+++.|+.++..+...++-+ ..+-....-.....|++..|..+-..-
T Consensus 151 ~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad--~~v~~NLAl~~~~~g~~~~A~~i~~~e 228 (257)
T COG5010 151 DEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAAD--SRVRQNLALVVGLQGDFREAEDIAVQE 228 (257)
T ss_pred hHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHhhcCChHHHHhhcccc
Confidence 999999999998887765 4555666788888888888887766543 345555555556778888887776554
Q ss_pred H
Q psy8681 339 L 339 (521)
Q Consensus 339 l 339 (521)
+
T Consensus 229 ~ 229 (257)
T COG5010 229 L 229 (257)
T ss_pred c
Confidence 4
No 122
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.28 E-value=8.1e-05 Score=70.63 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=132.1
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
-+.+ ...| +..+ ..+...+...|+-+.+..+..+++...| .+..+...++....+.|
T Consensus 57 ~~~~--~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~---~d~~ll~~~gk~~~~~g---------------- 114 (257)
T COG5010 57 GAAV--LRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYP---KDRELLAAQGKNQIRNG---------------- 114 (257)
T ss_pred HHHH--hcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCc---ccHHHHHHHHHHHHHhc----------------
Confidence 4444 6677 5666 8888888888887777777777665533 35666666777777777
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
++..|...+.++....|++. .+|...+-.+.+.|+++.+... |.++++..|+++.+..+++-.+
T Consensus 115 ------~~~~A~~~~rkA~~l~p~d~--~~~~~lgaaldq~Gr~~~Ar~a--------y~qAl~L~~~~p~~~nNlgms~ 178 (257)
T COG5010 115 ------NFGEAVSVLRKAARLAPTDW--EAWNLLGAALDQLGRFDEARRA--------YRQALELAPNEPSIANNLGMSL 178 (257)
T ss_pred ------chHHHHHHHHHHhccCCCCh--hhhhHHHHHHHHccChhHHHHH--------HHHHHHhccCCchhhhhHHHHH
Confidence 89999999999999999887 8999998888899998888755 9999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al 303 (521)
.-.|+...|+.++.++...-+.+. ++.+-...|++..|+.|-..-+
T Consensus 179 ~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 179 LLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred HHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 999999999999999888766433 5556667889998888755433
No 123
>KOG3617|consensus
Probab=98.26 E-value=7.6e-05 Score=80.15 Aligned_cols=257 Identities=17% Similarity=0.138 Sum_probs=148.1
Q ss_pred HhcCChhhhhhhcC--CCcH-----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH-
Q psy8681 68 EKQGNKIGEEGANK--ENEE-----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVE- 138 (521)
Q Consensus 68 ~~~gn~~~Ar~ife--~P~~-----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~- 138 (521)
..+|-+++|..+|. +-.+ +..+|.+++|.++ +--= .+|- -.++..|+..+...++++.|...|+++=.
T Consensus 811 ieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~D--RiHL-r~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 811 IELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKD--RIHL-RNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcc--ceeh-hhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 34455555555554 1111 4455666666666 4322 2222 24688888888888899999999988521
Q ss_pred ---------hcCC-------ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 139 ---------FFGE-------ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 139 ---------~~~~-------~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
..|. ...++.+|.-|+.+.++.| +.+.|..+|..|-+.+
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G----------------------emdaAl~~Y~~A~D~f--- 942 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG----------------------EMDAALSFYSSAKDYF--- 942 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc----------------------chHHHHHHHHHhhhhh---
Confidence 1110 1124567777777777776 8888888887765432
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------c
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA------N 276 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~------~ 276 (521)
..+...--.|+.+.|..+ .....|--+-+.+++.++..|++.+|...|.||-. +
T Consensus 943 -------s~VrI~C~qGk~~kAa~i-------------A~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRl 1002 (1416)
T KOG3617|consen 943 -------SMVRIKCIQGKTDKAARI-------------AEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRL 1002 (1416)
T ss_pred -------hheeeEeeccCchHHHHH-------------HHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222223444433321 22334555566677777777777777777766532 2
Q ss_pred CCchh-------------------HHHHHHHcC-CHHHHHHHHHHHH----------------------cCCCCCCcHHH
Q psy8681 277 IPPTK-------------------FAELESLLG-DMERARAIYELAI----------------------SQPRLDMPELV 314 (521)
Q Consensus 277 ~P~~~-------------------~a~le~~~g-~~e~Ar~ife~al----------------------~~~~~~~~~~l 314 (521)
+..+. -+..++.+| ...+|..+|.+|= +.-....++.+
T Consensus 1003 cKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1003 CKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 22221 223333333 5566655555431 10011235788
Q ss_pred HHHHHHHHHhcCChHHHHHH------HHHHHhcC----------------C----------CHHHHHHHHHHHHHcCCch
Q psy8681 315 WKAYIDFEVGQGERDKVREL------HERLLERT----------------V----------HVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l------~eral~~~----------------~----------~~~vwi~ya~~e~~~g~~~ 362 (521)
.....+|.....+|++|..+ |+++|++| | -..+....+.++..+|.
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~-- 1160 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGA-- 1160 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccc--
Confidence 89999999999999999887 45666653 1 03456667888888877
Q ss_pred hhHHHHHHHHHHH
Q psy8681 363 SVSLARRVFERAN 375 (521)
Q Consensus 363 ~~~~AR~vferAl 375 (521)
+..|-+-|.+|=
T Consensus 1161 -Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1161 -YHAATKKFTQAG 1172 (1416)
T ss_pred -hHHHHHHHhhhh
Confidence 666666666553
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.25 E-value=0.00011 Score=75.31 Aligned_cols=138 Identities=12% Similarity=0.064 Sum_probs=85.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.++.|+..+...+...|.+. .++...+++....|....|.+. |++++...|..+-+|+.|+..+.+.|++
T Consensus 321 ~~d~A~~~l~~L~~~~P~N~--~~~~~~~~i~~~~nk~~~A~e~--------~~kal~l~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 321 QYDEALKLLQPLIAAQPDNP--YYLELAGDILLEANKAKEAIER--------LKKALALDPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred ccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHH--------HHHHHhcCCCccHHHHHHHHHHHhcCCh
Confidence 66677777777776677665 5566666666666766666655 7777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+|..++.+.+...|.+. ++.-+..+|+..++... +.+.+...|+++.|...+.++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-------------------~AE~~~~~G~~~~A~~~l~~A 451 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-------------------RAEGYALAGRLEQAIIFLMRA 451 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-------------------HHHHHHhCCCHHHHHHHHHHH
Confidence 777777777777666654 34555555555444433 233333456666666666666
Q ss_pred HhcC-CCHHHHHH
Q psy8681 339 LERT-VHVKVWMN 350 (521)
Q Consensus 339 l~~~-~~~~vwi~ 350 (521)
.+.. ..-..|..
T Consensus 452 ~~~~~~~~~~~aR 464 (484)
T COG4783 452 SQQVKLGFPDWAR 464 (484)
T ss_pred HHhccCCcHHHHH
Confidence 6554 23344444
No 125
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.19 E-value=0.0043 Score=62.27 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=146.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+.+++-....++-+.-|+. ..........+.-..|+...+... ..+++...|.++.+-....+.+...|+.
T Consensus 133 d~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~~--------v~~ll~~~pr~~~vlrLa~r~y~~~g~~ 203 (400)
T COG3071 133 DEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAAREN--------VDQLLEMTPRHPEVLRLALRAYIRLGAW 203 (400)
T ss_pred cHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHHH--------HHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence 8889988888888763333 234566666777788888888766 8889999999999988888888888887
Q ss_pred HHHHHHHHHHHHcCCc--hh---------------------------------------------HHHHHHHcCCHHHHH
Q psy8681 264 DLIRETYERAIANIPP--TK---------------------------------------------FAELESLLGDMERAR 296 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~--~~---------------------------------------------~a~le~~~g~~e~Ar 296 (521)
..+..++...-+..-- .. |+.-...+|+.+.|.
T Consensus 204 ~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~ 283 (400)
T COG3071 204 QALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQ 283 (400)
T ss_pred HHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHH
Confidence 7776666554432111 11 555566778888888
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.+.+.++...- + +. ...++... .-++...-.+..+..++.+| ++.+|..++..+.+.+. +.+|...|+.|+
T Consensus 284 ~~i~~~Lk~~~-D--~~-L~~~~~~l-~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~---w~kA~~~leaAl 355 (400)
T COG3071 284 EIIEDALKRQW-D--PR-LCRLIPRL-RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL---WGKASEALEAAL 355 (400)
T ss_pred HHHHHHHHhcc-C--hh-HHHHHhhc-CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH---HHHHHHHHHHHH
Confidence 88877777432 1 12 23333322 45677777778888888776 68899999999999887 999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 376 QALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..-|+. +++..+-.++- +.|+...+..+....
T Consensus 356 ~~~~s~---~~~~~la~~~~----~~g~~~~A~~~r~e~ 387 (400)
T COG3071 356 KLRPSA---SDYAELADALD----QLGEPEEAEQVRREA 387 (400)
T ss_pred hcCCCh---hhHHHHHHHHH----HcCChHHHHHHHHHH
Confidence 887764 23333434433 678888887776443
No 126
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.18 E-value=4.3e-05 Score=67.77 Aligned_cols=84 Identities=6% Similarity=-0.111 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|+.++..+|.+. ..|..++......|+...|... |.+++..+|+++...+..+..+...|++
T Consensus 50 ~l~~A~~~f~~L~~~Dp~~~--~y~~gLG~~~Q~~g~~~~AI~a--------Y~~A~~L~~ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 50 EFAGAARLFQLLTIYDAWSF--DYWFRLGECCQAQKHWGEAIYA--------YGRAAQIKIDAPQAPWAAAECYLACDNV 119 (157)
T ss_pred CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 55555555555555555544 4555555555555555555444 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 264 DLIRETYERAIANI 277 (521)
Q Consensus 264 ~~Ar~~~erAl~~~ 277 (521)
+.|+..|+.|+..+
T Consensus 120 ~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 120 CYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHHHHHh
Confidence 55555555555543
No 127
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=3.3e-05 Score=60.97 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|+.++...|... .+|..++......|+.+.+... |++++...|.+..+|..++..+...|+.
T Consensus 15 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 15 DYDEALEYYEKALELDPDNA--DAYYNLAAAYYKLGKYEEALED--------YEKALELDPDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred cHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHhCCCcchhHHHHHHHHHHHHHhH
Confidence 88999999999999888765 6777777777777888777766 8999999999889999999999999999
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
+.|...+.+++...|.
T Consensus 85 ~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 85 EEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHHHHccCCC
Confidence 9999999998887763
No 128
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15 E-value=0.0025 Score=73.80 Aligned_cols=293 Identities=11% Similarity=0.026 Sum_probs=183.7
Q ss_pred HHhcccchhhHHH-HhhhccCCCC--------C--hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS--------D--TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIA 152 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P--------~--~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~ 152 (521)
....|+++.|..+ .++. ...+ . ...-...+......|+++.|...+++++...+..... ...+..
T Consensus 419 ~~~~g~~~~a~~~l~~a~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 496 (903)
T PRK04841 419 AQSQHRYSEVNTLLARAE--QELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV 496 (903)
T ss_pred HHHCCCHHHHHHHHHHHH--HhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 4456788888887 7665 3211 1 1222334555667899999999999999865421110 112222
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVI 228 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i 228 (521)
++......| +++.|+..|+.++...... ........++......|+...+...
T Consensus 497 lg~~~~~~G----------------------~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~- 553 (903)
T PRK04841 497 LGEVHHCKG----------------------ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYET- 553 (903)
T ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHH-
Confidence 333333344 9999999999998753221 1112334445566778999988876
Q ss_pred HhhHHHHHHHHHhhCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc----hh------HHHHHHHcC
Q psy8681 229 VSKRKFQYEEEVNSNP--------NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP----TK------FAELESLLG 290 (521)
Q Consensus 229 ~~krr~~ye~al~~~P--------~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~----~~------~a~le~~~g 290 (521)
+++++.... ....++...+..+...|++++|...+++++..... .. .+.+....|
T Consensus 554 -------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G 626 (903)
T PRK04841 554 -------QEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARG 626 (903)
T ss_pred -------HHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcC
Confidence 666665411 12233456677788889999999999999875332 11 456677899
Q ss_pred CHHHHHHHHHHHHcCCC-CCCcHHHHHH-----HHHHHHhcCChHHHHHHHHHHHhcCC-C----HHHHHHHHHHHHHcC
Q psy8681 291 DMERARAIYELAISQPR-LDMPELVWKA-----YIDFEVGQGERDKVRELHERLLERTV-H----VKVWMNYAQFEMSSG 359 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~-~~~~~~lw~~-----yi~~e~~~g~~~~Ar~l~eral~~~~-~----~~vwi~ya~~e~~~g 359 (521)
+++.|...+..+..... .... ..|.. .+......|+.+.|..++........ . ...+..++......|
T Consensus 627 ~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g 705 (903)
T PRK04841 627 DLDNARRYLNRLENLLGNGRYH-SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLG 705 (903)
T ss_pred CHHHHHHHHHHHHHHHhccccc-HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcC
Confidence 99999999999865211 1101 11211 11233457899999999877665321 1 123566777778888
Q ss_pred CchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 360 DEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 360 ~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+ .++|...|++++......+........+..+...-...|+.+.+...+.+.
T Consensus 706 ~---~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~A 757 (903)
T PRK04841 706 Q---FDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEA 757 (903)
T ss_pred C---HHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8 999999999999876554433333344444455556789988887777665
No 129
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.15 E-value=0.001 Score=77.06 Aligned_cols=262 Identities=12% Similarity=0.019 Sum_probs=177.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC------hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD------TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAK 155 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~------~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~ 155 (521)
....|+++.|... ++++ ...|. ...+..++..+...|+++.|+..|++++......... ...+..++.
T Consensus 462 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 462 AINDGDPEEAERLAELAL--AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHhCCCHHHHHHHHHHHH--hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 4568899999999 9998 65552 1244566777788999999999999999864321111 122233444
Q ss_pred HHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh-----h-HHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 156 FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD-----R-TAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 156 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~-----~-~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
.....| +++.|...+++++...... . ...++...+......|+.+.+...
T Consensus 540 ~~~~~G----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~-- 595 (903)
T PRK04841 540 ILFAQG----------------------FLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC-- 595 (903)
T ss_pred HHHHCC----------------------CHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH--
Confidence 444455 9999999999988762211 0 112333445555667999888766
Q ss_pred hhHHHHHHHHHhhCC----C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCCH
Q psy8681 230 SKRKFQYEEEVNSNP----N-NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------FAELESLLGDM 292 (521)
Q Consensus 230 ~krr~~ye~al~~~P----~-~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~~ 292 (521)
+++++.... . ....+..++.++...|+.+.|...+.++....+... ........|+.
T Consensus 596 ------~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 669 (903)
T PRK04841 596 ------ARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDK 669 (903)
T ss_pred ------HHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCH
Confidence 677665422 1 244556677888899999999999999976432211 01223457899
Q ss_pred HHHHHHHHHHHcCCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHcCCchh
Q psy8681 293 ERARAIYELAISQPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERT---V----HVKVWMNYAQFEMSSGDEDS 363 (521)
Q Consensus 293 e~Ar~ife~al~~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~----~~~vwi~ya~~e~~~g~~~~ 363 (521)
+.|...+........... ....+......+...|++++|..+|++++... . ...+.+.++..+...|+
T Consensus 670 ~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~--- 746 (903)
T PRK04841 670 EAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR--- 746 (903)
T ss_pred HHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC---
Confidence 999998877654221110 11224455666778999999999999999863 1 14467778888888898
Q ss_pred hHHHHHHHHHHHHHhccch
Q psy8681 364 VSLARRVFERANQALKASS 382 (521)
Q Consensus 364 ~~~AR~vferAl~~~~~~~ 382 (521)
.+.|+..+.+|+......+
T Consensus 747 ~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 747 KSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHHHHHHHhCccc
Confidence 9999999999999887654
No 130
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00015 Score=64.34 Aligned_cols=101 Identities=21% Similarity=0.269 Sum_probs=71.3
Q ss_pred HHHHHhhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 236 YEEEVNSNPNN---YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 236 ye~al~~~P~~---~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~ 304 (521)
++..+..+|.+ ..+++.++..+...|++++|...|+.++...|+.. ++.+....|+++.|..+++.. .
T Consensus 34 ~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~ 112 (145)
T PF09976_consen 34 AEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-P 112 (145)
T ss_pred HHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-c
Confidence 77788888877 56777888888888999999999999888775543 455666777777777777552 2
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
.+++ ...++...++++...|++++|+..|+++|
T Consensus 113 ~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 113 DEAF--KALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred Ccch--HHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 2222 34556666677777777777777777654
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.09 E-value=0.00035 Score=71.70 Aligned_cols=138 Identities=12% Similarity=0.025 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
..+...+.-....|..+.++.. +...+...|+|+-.|...+.++...++..+|.+.|++++...|...
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~--------l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~ 378 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKL--------LQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQL 378 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHH
Confidence 3444444444567888888876 8889999999999999999999999999999999999999999865
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~ 353 (521)
|+....+.|.+.+|..++...+...|.+ +..|..+...+..+|+..++...+-.+........-|+.++.
T Consensus 379 ~~a~all~~g~~~eai~~L~~~~~~~p~d--p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~ 449 (484)
T COG4783 379 NLAQALLKGGKPQEAIRILNRYLFNDPED--PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLM 449 (484)
T ss_pred HHHHHHHhcCChHHHHHHHHHHhhcCCCC--chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888888999999999999988876654 568888888888888888777766666554433333433333
No 132
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.08 E-value=5.5e-05 Score=67.07 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.....|+......|+.+.|..+ |+-.+..+|.+++.|+.++..+...|++.+|...|.+|+...|++.
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~--------f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~ 107 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARL--------FQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPW 107 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHH
Confidence 3444556666788999999987 9999999999999999999999999999999999999999998766
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 282 -FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
.+.....+|+.+.|++.|+.++...
T Consensus 108 ~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 108 AAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 4566778888999999888888754
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.06 E-value=3.5e-05 Score=79.16 Aligned_cols=91 Identities=14% Similarity=0.157 Sum_probs=76.4
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..++++.|..+|.+||...|.+. .+|..++......|+.+.|... |++++..+|.+..+|+.++.++...
T Consensus 14 ~~~~~~~Ai~~~~~Al~~~P~~~--~a~~~~a~~~~~~g~~~eAl~~--------~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 14 VDDDFALAVDLYTQAIDLDPNNA--ELYADRAQANIKLGNFTEAVAD--------ANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 33588899999999999888876 6777777777788888888766 8899999999889999999888888
Q ss_pred CCHHHHHHHHHHHHHcCCchh
Q psy8681 261 GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~ 281 (521)
|+++.|...|++|+...|.+.
T Consensus 84 g~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCH
Confidence 999999999999888888754
No 134
>PRK11906 transcriptional regulator; Provisional
Probab=98.03 E-value=0.00037 Score=71.81 Aligned_cols=155 Identities=14% Similarity=-0.038 Sum_probs=119.8
Q ss_pred hHHHHHHHHHHHH---hcCChhhHHHHHHHHHHHHH-HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYAL---DHIPKDRTAEIYKAYTIHEK-KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL---~~~P~~~~~~l~~~~~~~e~-~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
..++|..+|.+|+ ...|.......+.++..+.. .+|-.+... -.......-++++..+|.|+.+.+.++....-
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~--~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~ 350 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELEL--AAQKALELLDYVSDITTVDGKILAIMGLITGL 350 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchH--HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence 6789999999999 88888776666777776665 334332111 11234466899999999999999999999998
Q ss_pred cCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL 334 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l 334 (521)
.++.+.+...|++|+..+|++. ++.+....|+.++|+..+++|+...|..+...+.+.+++.+.. ..++.|..+
T Consensus 351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~ 429 (458)
T PRK11906 351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKL 429 (458)
T ss_pred hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHH
Confidence 9999999999999999999977 3455667899999999999999988776666677777766644 457788888
Q ss_pred HHHHHhc
Q psy8681 335 HERLLER 341 (521)
Q Consensus 335 ~eral~~ 341 (521)
|-+-.+.
T Consensus 430 ~~~~~~~ 436 (458)
T PRK11906 430 YYKETES 436 (458)
T ss_pred Hhhcccc
Confidence 7665443
No 135
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=0.00016 Score=61.04 Aligned_cols=110 Identities=9% Similarity=0.112 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
++.+...+......|+++.|...|.+++...|+.+....++..++......+ +++.|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~ 59 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG----------------------KYADAA 59 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc----------------------cHHHHH
Confidence 3567788888888888999999998888876654434566677777777776 888888
Q ss_pred HHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 190 VIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 190 ~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
.+|+.++...|.+. ...++..++......|+.+.+... |++++...|.+..+
T Consensus 60 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 60 KAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKAT--------LQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHH--------HHHHHHHCcCChhH
Confidence 89988888877642 125666777777778888887766 88888888887543
No 136
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.03 E-value=0.00063 Score=67.57 Aligned_cols=144 Identities=19% Similarity=0.230 Sum_probs=92.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHc-CCHHHHHHHHHHHHcC---CCC-CCcHHHHHHHHHHHHhcCCh
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTKFAELESLL-GDMERARAIYELAISQ---PRL-DMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~-g~~e~Ar~ife~al~~---~~~-~~~~~lw~~yi~~e~~~g~~ 328 (521)
+.++...|++..|-.++.+ .+.++... |+++.|...|++|+.. ... .....+....+.+..+.|++
T Consensus 101 ~~~y~~~G~~~~aA~~~~~---------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKE---------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHH---------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHhcCcHHHHHHHHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 3445556666666655555 66677666 8999999999998872 111 11245677788889999999
Q ss_pred HHHHHHHHHHHhcC---C----CH-HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHH---HHHHHHHHH
Q psy8681 329 DKVRELHERLLERT---V----HV-KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERV---MLLEAWKEF 397 (521)
Q Consensus 329 ~~Ar~l~eral~~~---~----~~-~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~---~l~~~~~~f 397 (521)
++|..+|++....+ + ++ ..++..+.+....|+ +..|+..|++....+|.-....+.. .|++++-
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D---~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~-- 246 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGD---YVAARKALERYCSQDPSFASSREYKFLEDLLEAYE-- 246 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH--
Confidence 99999999998764 1 12 356666667777787 9999999999988877543333332 3334433
Q ss_pred HHHcCCHHHHHHHHhhC
Q psy8681 398 EAQHGDDESRAKLNSKL 414 (521)
Q Consensus 398 E~~~G~~~~~~~v~~~~ 414 (521)
.||.+.+..+...+
T Consensus 247 ---~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 247 ---EGDVEAFTEAVAEY 260 (282)
T ss_dssp ---TT-CCCHHHHCHHH
T ss_pred ---hCCHHHHHHHHHHH
Confidence 57777666665444
No 137
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=0.00013 Score=74.91 Aligned_cols=108 Identities=11% Similarity=-0.027 Sum_probs=68.0
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
..-|......|+++.|..+|.+|+...| .+..+|..++......| +++.|...|+
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P---~~~~a~~~~a~~~~~~g----------------------~~~eAl~~~~ 60 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDP---NNAELYADRAQANIKLG----------------------NFTEAVADAN 60 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHHHHHHHHH
Confidence 3445555566677777777777776644 34566666666666665 6677777777
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
+++...|.+. ..|..++......|+.+.|... |++++..+|.+..+...+..+
T Consensus 61 ~Al~l~P~~~--~a~~~lg~~~~~lg~~~eA~~~--------~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 61 KAIELDPSLA--KAYLRKGTACMKLEEYQTAKAA--------LEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHhCcCCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHH
Confidence 7777766654 5566666666666766666655 777777777666655444443
No 138
>KOG0553|consensus
Probab=98.01 E-value=3.3e-05 Score=74.61 Aligned_cols=92 Identities=16% Similarity=0.163 Sum_probs=74.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
...++|..|...|.+||...|.+. .+|-.-+..+.+.|..+.|..- .+.+|..+|++..+|..++..+..
T Consensus 92 m~~~~Y~eAv~kY~~AI~l~P~nA--VyycNRAAAy~~Lg~~~~AVkD--------ce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 92 MKNKDYQEAVDKYTEAIELDPTNA--VYYCNRAAAYSKLGEYEDAVKD--------CESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcc--hHHHHHHHHHHHhcchHHHHHH--------HHHHHhcChHHHHHHHHHHHHHHc
Confidence 344588888888888888888876 5666667777788888777755 888888888888888888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|++.+|...|.+||.+.|...
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNE 183 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcH
Confidence 8888888888888888888653
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.97 E-value=0.00019 Score=63.76 Aligned_cols=114 Identities=17% Similarity=0.231 Sum_probs=91.8
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHhcCChH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~e~~~g~~~ 329 (521)
..++...+...++..+...|.+. .+......|+++.|..+|+.++...+. .....++..++.++...|+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 47788899999999999999885 345567889999999999999996532 222456666778888999999
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 330 KVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 330 ~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
.|..+++........+.++...+..+...|+ .+.|+..|++|+
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~---~~~A~~~y~~Al 145 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGD---YDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCC---HHHHHHHHHHhC
Confidence 9999997743222356788889999999998 999999999985
No 140
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00016 Score=60.97 Aligned_cols=90 Identities=17% Similarity=0.180 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC---HHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---YDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---~~~W~~y~~~~~~ 259 (521)
+++.|...|..++...|.+. ....+..++......|+...+... |+.++..+|.+ ..+|..++..+..
T Consensus 17 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~~~~~~~~~~~ 88 (119)
T TIGR02795 17 DYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKA--------FLAVVKKYPKSPKAPDALLKLGMSLQE 88 (119)
T ss_pred CHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHH--------HHHHHHHCCCCCcccHHHHHHHHHHHH
Confidence 88888888888888877642 124556667777777888777766 88888877764 5678888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|+.+.|...|.+++...|.+.
T Consensus 89 ~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 89 LGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred hCChHHHHHHHHHHHHHCcCCh
Confidence 8888888888888888877653
No 141
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.94 E-value=3.6e-05 Score=58.03 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=53.5
Q ss_pred HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 212 TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 212 ~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
+......|+.+.+... |++++..+|.++.+|+.++.++...|++++|...|++++...|.+
T Consensus 4 a~~~~~~g~~~~A~~~--------~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAA--------FEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHH--------HHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHH--------HHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4445577888888877 999999999999999999999999999999999999999999975
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.91 E-value=0.00063 Score=73.07 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=109.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHcCCchh--HHHH---HH---Hc-----CCHHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDE--G---NADLIRETYERAIANIPPTK--FAEL---ES---LL-----GDMERARA 297 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~--g---~~~~Ar~~~erAl~~~P~~~--~a~l---e~---~~-----g~~e~Ar~ 297 (521)
-+++....|.+.++|-.|.+...-. + ....|+.+|++|++..|+.. ++.+ +. .. +....+..
T Consensus 326 ~~~~~~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~ 405 (517)
T PRK10153 326 QERLQQGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALST 405 (517)
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 3444456788999998888775432 2 37799999999999999976 2221 11 11 13456666
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 298 IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 298 ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...+++..+.....+.++..++-.....|+++.|...|++++...|+...|+.++.++...|+ .++|...|++|+..
T Consensus 406 ~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~---~~eA~~~~~~A~~L 482 (517)
T PRK10153 406 ELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGD---NRLAADAYSTAFNL 482 (517)
T ss_pred HHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhc
Confidence 677766643222234677777777777899999999999999999998899999999999999 99999999999999
Q ss_pred hccch
Q psy8681 378 LKASS 382 (521)
Q Consensus 378 ~~~~~ 382 (521)
.|..+
T Consensus 483 ~P~~p 487 (517)
T PRK10153 483 RPGEN 487 (517)
T ss_pred CCCCc
Confidence 99865
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.89 E-value=0.00024 Score=55.81 Aligned_cols=98 Identities=19% Similarity=0.176 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHH
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVI 191 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~i 191 (521)
.|...+..+...|+++.|..+|.+++...|. ...+|..++......+ +++.|..+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~----------------------~~~~a~~~ 56 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPD---NADAYYNLAAAYYKLG----------------------KYEEALED 56 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCc---cHHHHHHHHHHHHHHH----------------------HHHHHHHH
Confidence 4667777777778888888888888777542 3456666777666666 77888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC
Q psy8681 192 YKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244 (521)
Q Consensus 192 y~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P 244 (521)
|+.++...|... .++..++.+....|+...+... +.+++..+|
T Consensus 57 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~~ 99 (100)
T cd00189 57 YEKALELDPDNA--KAYYNLGLAYYKLGKYEEALEA--------YEKALELDP 99 (100)
T ss_pred HHHHHhCCCcch--hHHHHHHHHHHHHHhHHHHHHH--------HHHHHccCC
Confidence 888887777665 5666666666667776666655 677666655
No 144
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.88 E-value=5.8e-05 Score=57.57 Aligned_cols=65 Identities=20% Similarity=0.285 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCC
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG-NADLIRETYERAIANIP 278 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g-~~~~Ar~~~erAl~~~P 278 (521)
.+|..++......|+.+.+... |.+++..+|.++.+|..++..+...| ++.+|...|++|++..|
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~--------~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEY--------FEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHH--------HHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 5778888888888988888877 99999999999999999999999999 79999999999999887
No 145
>KOG2376|consensus
Probab=97.88 E-value=0.042 Score=57.98 Aligned_cols=328 Identities=15% Similarity=0.099 Sum_probs=184.1
Q ss_pred HHHH-HHHHhcCChhhhhhhcC-CCc---------H----HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc
Q psy8681 61 AWKK-AMEEKQGNKIGEEGANK-ENE---------E----EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN 123 (521)
Q Consensus 61 ~W~~-~~e~~~gn~~~Ar~ife-~P~---------~----e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~ 123 (521)
+..+ -..-+++.|+.|..+.+ +|. + +-|++..++|... . . +.+ +..+-...++..-+.
T Consensus 49 ~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~----~~~~~~~ll~L~AQvlYrl 123 (652)
T KOG2376|consen 49 IRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-G----LDRLDDKLLELRAQVLYRL 123 (652)
T ss_pred HhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-c----ccccchHHHHHHHHHHHHH
Confidence 3344 33345566777766665 332 1 5567777877777 6 2 345 566888889999999
Q ss_pred CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh----hhccc-cchhhHHHHHhh--hhhhhhHHHHHHHHHHHH
Q psy8681 124 GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR----EKYGD-RAGIEDVIVSKR--KFQYEEHERARVIYKYAL 196 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~----~~~~~-~~~~~~~~l~~~--~~~~~~~e~Ar~iy~~aL 196 (521)
|++++|..+|+..++..-++ .+..+-.++...-.... ...+- ..+....+.+.. +.+.|.+..|..+++.|+
T Consensus 124 ~~ydealdiY~~L~kn~~dd-~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~ 202 (652)
T KOG2376|consen 124 ERYDEALDIYQHLAKNNSDD-QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKAL 202 (652)
T ss_pred hhHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 99999999999998863221 12222222222111111 01111 111222223332 345678999999998885
Q ss_pred hcCCh-------------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH--------------
Q psy8681 197 DHIPK-------------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA-------------- 249 (521)
Q Consensus 197 ~~~P~-------------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~-------------- 249 (521)
..+-. .....+-..++-.....|..+.+..+ |...|..+|.|..+
T Consensus 203 ~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~i--------y~~~i~~~~~D~~~~Av~~NNLva~~~d 274 (652)
T KOG2376|consen 203 RICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSI--------YVDIIKRNPADEPSLAVAVNNLVALSKD 274 (652)
T ss_pred HHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHH--------HHHHHHhcCCCchHHHHHhcchhhhccc
Confidence 54211 11112333334445566877766654 44444444332211
Q ss_pred ----------------------H-------------HHHHHHHHHcC---------------------------------
Q psy8681 250 ----------------------W-------------FDYLRLLEDEG--------------------------------- 261 (521)
Q Consensus 250 ----------------------W-------------~~y~~~~~~~g--------------------------------- 261 (521)
| .+.+.+.+-.+
T Consensus 275 ~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~ 354 (652)
T KOG2376|consen 275 QNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVRE 354 (652)
T ss_pred cccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHH
Confidence 0 00000000011
Q ss_pred -CHHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHH--------cCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 262 -NADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAI--------SQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 262 -~~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al--------~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
.+..+..++.......|... .+.+....|+...|..++.... +... .+ .+-.....+..+.+
T Consensus 355 ~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P-~~V~aiv~l~~~~~ 431 (652)
T KOG2376|consen 355 KKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LP-GTVGAIVALYYKIK 431 (652)
T ss_pred HHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--Ch-hHHHHHHHHHHhcc
Confidence 12223333333333333331 4566778999999999999332 2111 11 22333344556777
Q ss_pred ChHHHHHHHHHHHhcC----C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q psy8681 327 ERDKVRELHERLLERT----V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~----~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE 398 (521)
+.+.|..++..++... + ...+|-..+.|+...|+ .+.|.++++..++..|...+ --+.+..+|.
T Consensus 432 ~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~---~~ea~s~leel~k~n~~d~~--~l~~lV~a~~--- 503 (652)
T KOG2376|consen 432 DNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGN---EEEASSLLEELVKFNPNDTD--LLVQLVTAYA--- 503 (652)
T ss_pred CCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCc---hHHHHHHHHHHHHhCCchHH--HHHHHHHHHH---
Confidence 8888999999988752 1 24567778999999998 99999999999999887532 3345555555
Q ss_pred HHcCCHHHHHHHHhhCc
Q psy8681 399 AQHGDDESRAKLNSKLP 415 (521)
Q Consensus 399 ~~~G~~~~~~~v~~~~p 415 (521)
.=|++.+..+.+.+|
T Consensus 504 --~~d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 504 --RLDPEKAESLSKKLP 518 (652)
T ss_pred --hcCHHHHHHHhhcCC
Confidence 456777777776665
No 146
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.85 E-value=0.0036 Score=62.31 Aligned_cols=143 Identities=15% Similarity=0.118 Sum_probs=106.2
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 236 YEEEVNSNP--NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 236 ye~al~~~P--~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
|+.||...- .+.+.-...+.++...++++.|.+.++.+-+...++. |..+....+.+..|.-+|+......
T Consensus 118 ~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~ 197 (290)
T PF04733_consen 118 YEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKF 197 (290)
T ss_dssp HHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS
T ss_pred HHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcc
Confidence 555565422 4677777888888999999999999999887766655 4445444557999999999987765
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+. ...+....+-.....|++++|..+++.++...| ++.+.++.+.+....|. ..+.+...+.+.-...|.++
T Consensus 198 ~~--t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk--~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 198 GS--TPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK--PTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp ----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT---TCHHHHHHHHHCHHHTTTSH
T ss_pred CC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhCCCCh
Confidence 43 456777788888899999999999999998876 68889999888888886 13667777777777778764
No 147
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.84 E-value=0.00068 Score=61.72 Aligned_cols=99 Identities=14% Similarity=0.041 Sum_probs=74.7
Q ss_pred chhhHHH-HhhhccCCCC-C--hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcccc
Q psy8681 92 RDREEED-ERKDEGDRDS-D--TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P-~--~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~ 167 (521)
+..++.. ...+ ...+ . ...|..++......|+++.|...|.+|+...++......+|..++......|
T Consensus 15 ~~~~~~~l~~~~--~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g------ 86 (168)
T CHL00033 15 FTIVADILLRIL--PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG------ 86 (168)
T ss_pred cccchhhhhHhc--cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcC------
Confidence 4455555 5555 4455 2 6889999999999999999999999999886643334568888888888888
Q ss_pred chhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
.++.|+..|++++...|... ..+...+.+..
T Consensus 87 ----------------~~~eA~~~~~~Al~~~~~~~--~~~~~la~i~~ 117 (168)
T CHL00033 87 ----------------EHTKALEYYFQALERNPFLP--QALNNMAVICH 117 (168)
T ss_pred ----------------CHHHHHHHHHHHHHhCcCcH--HHHHHHHHHHH
Confidence 99999999999999887654 34444444433
No 148
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.84 E-value=7.9e-05 Score=56.15 Aligned_cols=60 Identities=18% Similarity=0.201 Sum_probs=46.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+..+...|+++.|+.+|++++...| ++.+|..++.++...|+ ++.|+.+|++++...|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~---~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGR---YDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCC
Confidence 4456678888888888888888887 57788888888888887 888888888888887765
No 149
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.84 E-value=2e-05 Score=49.52 Aligned_cols=30 Identities=40% Similarity=0.680 Sum_probs=28.0
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8681 327 ERDKVRELHERLLERTVHVKVWMNYAQFEM 356 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~~~~~vwi~ya~~e~ 356 (521)
+++.||.+|+|.+..+|++.+|+.||.||.
T Consensus 2 E~dRAR~IyeR~v~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCchHHHHHHHhhc
Confidence 578999999999999999999999999985
No 150
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.83 E-value=0.0013 Score=61.93 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=102.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..+...|......|++..|+..|+..+..+|..+..+.+.+.++......+ +++.|+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~----------------------~y~~A~ 62 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG----------------------DYEEAI 62 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-----------------------HHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 5667788888889999999999999999998865555666666666665666 999999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
..|++.+...|.+... -+.. |..++.. +..|-.........+....|...
T Consensus 63 ~~~~~fi~~yP~~~~~-~~A~-------------------------Y~~g~~~----~~~~~~~~~~~~D~~~~~~A~~~ 112 (203)
T PF13525_consen 63 AAYERFIKLYPNSPKA-DYAL-------------------------YMLGLSY----YKQIPGILRSDRDQTSTRKAIEE 112 (203)
T ss_dssp HHHHHHHHH-TT-TTH-HHHH-------------------------HHHHHHH----HHHHHHHH-TT---HHHHHHHHH
T ss_pred HHHHHHHHHCCCCcch-hhHH-------------------------HHHHHHH----HHhCccchhcccChHHHHHHHHH
Confidence 9999999999986511 0111 1111100 00000000111122335567777
Q ss_pred HHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC----H
Q psy8681 270 YERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH----V 345 (521)
Q Consensus 270 ~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~----~ 345 (521)
|+..+...|++.|+. .|......+-..- ..-=..-+.|+.+.|.+..|..-|+.+++..|. .
T Consensus 113 ~~~li~~yP~S~y~~---------~A~~~l~~l~~~l-----a~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~ 178 (203)
T PF13525_consen 113 FEELIKRYPNSEYAE---------EAKKRLAELRNRL-----AEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAE 178 (203)
T ss_dssp HHHHHHH-TTSTTHH---------HHHHHHHHHHHHH-----HHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHH
T ss_pred HHHHHHHCcCchHHH---------HHHHHHHHHHHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHH
Confidence 888888888776332 1111111110000 000011356677788888888888888888763 3
Q ss_pred HHHHHHHHHHHHcCC
Q psy8681 346 KVWMNYAQFEMSSGD 360 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~ 360 (521)
..+..++......|.
T Consensus 179 ~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 179 EALARLAEAYYKLGL 193 (203)
T ss_dssp HHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhCC
Confidence 455556666666665
No 151
>KOG0553|consensus
Probab=97.81 E-value=0.00029 Score=68.24 Aligned_cols=109 Identities=16% Similarity=0.032 Sum_probs=62.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy8681 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYAL 196 (521)
Q Consensus 117 a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL 196 (521)
+.=.+..++|.+|...|.+||.+.|. ++-+|.+-+..+.++| +++.|..-++.||
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~---nAVyycNRAAAy~~Lg----------------------~~~~AVkDce~Al 142 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPT---NAVYYCNRAAAYSKLG----------------------EYEDAVKDCESAL 142 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCC---cchHHHHHHHHHHHhc----------------------chHHHHHHHHHHH
Confidence 33344455666666666666666442 4445555555555555 6666666666666
Q ss_pred hcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 197 DHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 197 ~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..+|... ..|..++......|..+.|... |.++|.++|.+...|..+-......
T Consensus 143 ~iDp~ys--kay~RLG~A~~~~gk~~~A~~a--------ykKaLeldP~Ne~~K~nL~~Ae~~l 196 (304)
T KOG0553|consen 143 SIDPHYS--KAYGRLGLAYLALGKYEEAIEA--------YKKALELDPDNESYKSNLKIAEQKL 196 (304)
T ss_pred hcChHHH--HHHHHHHHHHHccCcHHHHHHH--------HHhhhccCCCcHHHHHHHHHHHHHh
Confidence 6666544 5555555555556666666544 6666666666665555554444333
No 152
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.80 E-value=0.0001 Score=71.24 Aligned_cols=154 Identities=10% Similarity=0.203 Sum_probs=101.7
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
+.|..||.-|..-.....-++.|+.++... +..|.-=-+-+.......+..+ .-..+..-+|.++....+.
T Consensus 35 ktRr~fE~rL~rr~~klnDf~~YI~yE~nl---eklRaKR~Kr~~v~~K~s~sD~----sipqk~~f~~~R~tnkff~-- 105 (435)
T COG5191 35 KTRRKFELRLQRREKKLNDFMRYIKYECNL---EKLRAKRVKRKKVGKKASFSDM----SIPQKKIFELYRSTNKFFN-- 105 (435)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHhhH---HHHHHHHHHHHHhcccccchhc----cccceeeEeeehhhhcCCC--
Confidence 445567777776555566677777776533 2222111110111000000000 0011111233344443333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHHhccchhhHHHH
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQALKASSEKEERV 388 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~~~~~~~~~~~~ 388 (521)
+..+|..|+.+-...|.+.....+|..+|+.+| ++++|+..+.|+.. +++ ++.||++|.+|+...|.++
T Consensus 106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~an---i~s~Ra~f~~glR~N~~~p------ 176 (435)
T COG5191 106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIAN---IESSRAMFLKGLRMNSRSP------ 176 (435)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhcc---HHHHHHHHHhhhccCCCCc------
Confidence 367999999999999999999999999999998 79999998888776 455 9999999999999999886
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 389 MLLEAWKEFEAQHG 402 (521)
Q Consensus 389 ~l~~~~~~fE~~~G 402 (521)
.+|-+|..||-.|=
T Consensus 177 ~iw~eyfr~El~yi 190 (435)
T COG5191 177 RIWIEYFRMELMYI 190 (435)
T ss_pred hHHHHHHHHHHHHH
Confidence 59999999997764
No 153
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.80 E-value=0.00063 Score=62.23 Aligned_cols=114 Identities=20% Similarity=0.285 Sum_probs=83.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...+..++..+...|++++|...|++++...++.+....+|..++......| +++.|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g----------------------~~~~A 91 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNG----------------------EHDKA 91 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 36778999999999999999999999999875532223567788888777777 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-------hhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-------AGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-------~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
..+|.+++...|... ..+..++......|.. +.+... ..+....|++++..+|.++
T Consensus 92 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~a~~~~~~A~~~-~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 92 LEYYHQALELNPKQP--SALNNIAVIYHKRGEKAEEAGDQDEAEAL-FDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred HHHHHHHHHhCcccH--HHHHHHHHHHHHcCChHhHhhCHHHHHHH-HHHHHHHHHHHHhhCchhH
Confidence 999999999988765 5555666665555543 222221 1234455888888888874
No 154
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.79 E-value=0.00011 Score=55.93 Aligned_cols=65 Identities=22% Similarity=0.236 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC-CchhhHHHHHHHHHHHHHhc
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSG-DEDSVSLARRVFERANQALK 379 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g-~~~~~~~AR~vferAl~~~~ 379 (521)
+.+|...+......|+++.|...|.+++...| ++.+|..++..+...| + +.+|...|++|++..|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~---~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKD---YEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCc
Confidence 56899999999999999999999999999998 6889999999999988 6 9999999999998876
No 155
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.0013 Score=70.77 Aligned_cols=149 Identities=9% Similarity=-0.011 Sum_probs=96.0
Q ss_pred CCCC-ChhhHHHHHHHHHH--cC---ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQ--NG---FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~--~g---~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
...| +...|-.|.+-..- .+ +...|+.+|++|++..| ....+|..++....... .+...
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP---~~a~a~A~la~~~~~~~-~~~~~----------- 395 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEP---DFTYAQAEKALADIVRH-SQQPL----------- 395 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHHH-hcCCc-----------
Confidence 3345 67777777766433 22 37799999999999965 35555544333221111 01100
Q ss_pred hhhhhhHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 179 KFQYEEHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~--~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
....+..+.....+++.. .|... .+|..++......|+.+.|... |++++..+| +...|..++.+
T Consensus 396 --~~~~l~~a~~~~~~a~al~~~~~~~--~~~~ala~~~~~~g~~~~A~~~--------l~rAl~L~p-s~~a~~~lG~~ 462 (517)
T PRK10153 396 --DEKQLAALSTELDNIVALPELNVLP--RIYEILAVQALVKGKTDEAYQA--------INKAIDLEM-SWLNYVLLGKV 462 (517)
T ss_pred --cHHHHHHHHHHHHHhhhcccCcCCh--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHHcCC-CHHHHHHHHHH
Confidence 001345666666666553 44333 5677666666667888877766 888888888 47788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+...|+.++|...|++|+...|...
T Consensus 463 ~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 463 YELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 8888888888888888888877643
No 156
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.75 E-value=0.0058 Score=59.24 Aligned_cols=50 Identities=12% Similarity=-0.027 Sum_probs=30.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcCCC----HHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 319 IDFEVGQGERDKVRELHERLLERTVH----VKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~~~----~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
+.|+.+.|.+..|..-|+.++...|. .+....++......|. .+.|..+.
T Consensus 182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~---~~~a~~~~ 235 (243)
T PRK10866 182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL---NAQADKVA 235 (243)
T ss_pred HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC---hHHHHHHH
Confidence 45566677777777777777777652 3444445555556666 55555544
No 157
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.75 E-value=0.0013 Score=61.93 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=88.9
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHH--HHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAK--FEE 158 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~--~e~ 158 (521)
.++.|++..|+.. ++++ ..+| + ...++.++..+...|+++.|+..|++-+..+|.++..+.++...+. +..
T Consensus 15 ~~~~g~y~~Ai~~f~~l~--~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLI--DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHCT-HHHHHHHHHHHH--HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3456777777777 8999 8888 4 5778888999999999999999999999999976544444433332 222
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
..+ . + ......+....|...|+..+...|.+.-..--...+. ....
T Consensus 93 ~~~-~-----------~-~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~---------------------~l~~ 138 (203)
T PF13525_consen 93 IPG-I-----------L-RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLA---------------------ELRN 138 (203)
T ss_dssp HHH-H-----------H--TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHH---------------------HHHH
T ss_pred Ccc-c-----------h-hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHH---------------------HHHH
Confidence 111 0 0 0000112566788888888888887651100000000 0111
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|. .-=+..++++.+.|.+..|..-|+.++...|++.
T Consensus 139 ~la------~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~ 175 (203)
T PF13525_consen 139 RLA------EHELYIARFYYKRGKYKAAIIRFQYVIENYPDTP 175 (203)
T ss_dssp HHH------HHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSH
T ss_pred HHH------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCc
Confidence 110 1113456677777777778888888888777765
No 158
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.74 E-value=0.00059 Score=70.38 Aligned_cols=121 Identities=13% Similarity=0.107 Sum_probs=93.2
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
-.+..+....++++.|+.+|++.....| .++..+++.....+ +-.+|..+..
T Consensus 173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~p------ev~~~LA~v~l~~~----------------------~E~~AI~ll~ 224 (395)
T PF09295_consen 173 DTLLKYLSLTQRYDEAIELLEKLRERDP------EVAVLLARVYLLMN----------------------EEVEAIRLLN 224 (395)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHhcCC------cHHHHHHHHHHhcC----------------------cHHHHHHHHH
Confidence 3445555566788889999988877643 34555666665555 6678888888
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
++|...|.+. .+....+.|..+.|+.+.|..+ .++++...|.+...|..++..+...|+++.|.-++..
T Consensus 225 ~aL~~~p~d~--~LL~~Qa~fLl~k~~~~lAL~i--------Ak~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 225 EALKENPQDS--ELLNLQAEFLLSKKKYELALEI--------AKKAVELSPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHhCCCCH--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 8888888775 7888888888888888888776 8888899999999999999999999988888765553
No 159
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.74 E-value=0.00069 Score=66.29 Aligned_cols=38 Identities=24% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhH
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKF 282 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~ 282 (521)
..+++|+.++..+...|+.+.|+.+|++.+...|.+.+
T Consensus 215 ~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~ 252 (263)
T PRK10803 215 KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDG 252 (263)
T ss_pred chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 35677777777777888888888888888888887653
No 160
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.73 E-value=0.00025 Score=70.56 Aligned_cols=155 Identities=11% Similarity=0.119 Sum_probs=94.9
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
..|+++.|..+ .+. .+.++-...+.++...++++.|.+.+..+-+... +..-..+..+|..+.....
T Consensus 114 ~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~e-D~~l~qLa~awv~l~~g~e----- 181 (290)
T PF04733_consen 114 HEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQIDE-DSILTQLAEAWVNLATGGE----- 181 (290)
T ss_dssp CCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHTTT-----
T ss_pred HcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhCch-----
Confidence 34555555554 432 2456666677777777888888887777655421 1111233344444443332
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
.+..|..+|+...+.+|.+. .+....+......|+.+.|+.+ +++++..+|++
T Consensus 182 -----------------~~~~A~y~f~El~~~~~~t~--~~lng~A~~~l~~~~~~eAe~~--------L~~al~~~~~~ 234 (290)
T PF04733_consen 182 -----------------KYQDAFYIFEELSDKFGSTP--KLLNGLAVCHLQLGHYEEAEEL--------LEEALEKDPND 234 (290)
T ss_dssp -----------------CCCHHHHHHHHHHCCS--SH--HHHHHHHHHHHHCT-HHHHHHH--------HHHHCCC-CCH
T ss_pred -----------------hHHHHHHHHHHHHhccCCCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHHhccCC
Confidence 56777778888777666554 5666777777777888888766 77788888888
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCchh
Q psy8681 247 YDAWFDYLRLLEDEGNA-DLIRETYERAIANIPPTK 281 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~-~~Ar~~~erAl~~~P~~~ 281 (521)
+++..+++.+..-.|+. +.+...+.+.-...|.+.
T Consensus 235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 88887777777777765 556666666666677655
No 161
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.013 Score=58.21 Aligned_cols=203 Identities=16% Similarity=0.148 Sum_probs=109.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
.+++...+..+...|++++|...|.+|...... .......|...+..... .+++
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-----------------------~~~~ 91 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-----------------------GDPD 91 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-----------------------TTHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-----------------------hCHH
Confidence 355666667777777888888888888765311 00011112222221111 1455
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc-CCHHH
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-GNADL 265 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~-g~~~~ 265 (521)
.|..+|++|+. +....|+...+- .+...++.++... |+++.
T Consensus 92 ~Ai~~~~~A~~----------------~y~~~G~~~~aA----------------------~~~~~lA~~ye~~~~d~e~ 133 (282)
T PF14938_consen 92 EAIECYEKAIE----------------IYREAGRFSQAA----------------------KCLKELAEIYEEQLGDYEK 133 (282)
T ss_dssp HHHHHHHHHHH----------------HHHHCT-HHHHH----------------------HHHHHHHHHHCCTT--HHH
T ss_pred HHHHHHHHHHH----------------HHHhcCcHHHHH----------------------HHHHHHHHHHHHHcCCHHH
Confidence 55555555553 334556544432 2334556666666 67777
Q ss_pred HHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCC-C-Cc---HHHHHHHHHHHHhcCChH
Q psy8681 266 IRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRL-D-MP---ELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 266 Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~-~-~~---~~lw~~yi~~e~~~g~~~ 329 (521)
|...|++|+....... .+.+...+|+++.|..+|++....... . .. ...+...+-.....|++.
T Consensus 134 Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v 213 (282)
T PF14938_consen 134 AIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYV 213 (282)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHH
Confidence 7777777766532111 677888899999999999998764211 0 11 123333344455679999
Q ss_pred HHHHHHHHHHhcCC----CHH--HHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 330 KVRELHERLLERTV----HVK--VWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 330 ~Ar~l~eral~~~~----~~~--vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
.|+..|++....+| +.+ +-..++..... |+.+.+..|..-|.+.
T Consensus 214 ~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~-~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 214 AARKALERYCSQDPSFASSREYKFLEDLLEAYEE-GDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHT-T-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHh-CCHHHHHHHHHHHccc
Confidence 99999999988765 333 32333333322 3434455555555544
No 162
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=97.69 E-value=2e-05 Score=49.50 Aligned_cols=29 Identities=28% Similarity=0.171 Sum_probs=26.2
Q ss_pred cchhhHHH-HhhhccCCCCChhhHHHHHHHHH
Q psy8681 91 ERDREEED-ERKDEGDRDSDTTYGMRELVFEE 121 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~ 121 (521)
++++||.+ +|+| .+||++..|+.|+.||.
T Consensus 2 E~dRAR~IyeR~v--~~hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFV--LVHPEVKNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHH--HhCCCchHHHHHHHhhc
Confidence 57889999 9999 99999999999999985
No 163
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.67 E-value=0.0014 Score=59.94 Aligned_cols=116 Identities=16% Similarity=0.120 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHH
Q psy8681 147 EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 147 ~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
...+..++......| +++.|...|++++...|... ...+|..++......|+.+.+.
T Consensus 35 a~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 92 (172)
T PRK02603 35 AFVYYRDGMSAQADG----------------------EYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKAL 92 (172)
T ss_pred HHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHH
Confidence 445566666666666 99999999999998765432 2357888888888999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.. |++++..+|.+...|..++.++...|+...+..-++.|+. .+.+|..++++++..
T Consensus 93 ~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~---------------~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 93 EY--------YHQALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEA---------------LFDKAAEYWKQAIRL 149 (172)
T ss_pred HH--------HHHHHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHH---------------HHHHHHHHHHHHHhh
Confidence 76 9999999999999999999999998887666655555543 246677777777775
Q ss_pred CC
Q psy8681 306 PR 307 (521)
Q Consensus 306 ~~ 307 (521)
.|
T Consensus 150 ~p 151 (172)
T PRK02603 150 AP 151 (172)
T ss_pred Cc
Confidence 44
No 164
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.63 E-value=0.00096 Score=57.66 Aligned_cols=111 Identities=20% Similarity=0.437 Sum_probs=80.7
Q ss_pred HHHHHHHHhhCC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 233 KFQYEEEVNSNP---NNYDAWFDYLRLLEDE----GNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 233 r~~ye~al~~~P---~~~~~W~~y~~~~~~~----g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~ 304 (521)
+..|+..|.... +..+.|..|+....++ +.......++++++..+.++. |-
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~--------------------- 63 (126)
T PF08311_consen 5 RQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYK--------------------- 63 (126)
T ss_dssp HHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGT---------------------
T ss_pred HHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhc---------------------
Confidence 456888888755 4568999999999876 345667778888877654321 00
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
+++ -...+|..|+++. +.++++|..+.... .++..|+.||.++...|+ +.+|.+||+.||
T Consensus 64 nD~--RylkiWi~ya~~~------~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~---~~~A~~I~~~Gi 126 (126)
T PF08311_consen 64 NDE--RYLKIWIKYADLS------SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGN---FKKADEIYQLGI 126 (126)
T ss_dssp T-H--HHHHHHHHHHTTB------SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT----HHHHHHHHHHHH
T ss_pred CCH--HHHHHHHHHHHHc------cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCC---HHHHHHHHHhhC
Confidence 000 0246888888532 38999999988764 478999999999999998 999999999986
No 165
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.61 E-value=0.00057 Score=66.91 Aligned_cols=93 Identities=8% Similarity=0.115 Sum_probs=82.9
Q ss_pred HhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
++.|+++.|+.. +.++ ..+| + +..+..+|.++...|+++.|+..|.+++..+|+++..+.++...+......|
T Consensus 154 ~~~~~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 346788899988 9999 9999 4 4789999999999999999999999999999977777888988888887777
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+.+.|+.+|+.+++..|.+.
T Consensus 232 ----------------------~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 232 ----------------------DTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred ----------------------CHHHHHHHHHHHHHHCcCCH
Confidence 99999999999999999875
No 166
>KOG0550|consensus
Probab=97.61 E-value=0.00056 Score=68.75 Aligned_cols=56 Identities=16% Similarity=-0.018 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
++...+....+.|+..+|....+.|+++.|.-. -+..+..++.++.|+.-|+.+++
T Consensus 289 lY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 289 LYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444555555555555554444321 12233344555555555555554
No 167
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.61 E-value=0.00024 Score=56.62 Aligned_cols=82 Identities=17% Similarity=0.175 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+.++.|..+|+++++..|.+.....|..++...-+.|+...|..+ +++ +..+|.+....+.++..+.+.|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~--------~~~-~~~~~~~~~~~~l~a~~~~~l~~ 73 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIEL--------LQK-LKLDPSNPDIHYLLARCLLKLGK 73 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHH--------HHC-HTHHHCHHHHHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHH--------HHH-hCCCCCCHHHHHHHHHHHHHhCC
Confidence 488899999999999888532235666677777788888888766 666 77778888888888999999999
Q ss_pred HHHHHHHHHHH
Q psy8681 263 ADLIRETYERA 273 (521)
Q Consensus 263 ~~~Ar~~~erA 273 (521)
.++|+.+|++|
T Consensus 74 y~eAi~~l~~~ 84 (84)
T PF12895_consen 74 YEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 99999988875
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.60 E-value=0.0016 Score=59.31 Aligned_cols=88 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC---HHHHHHHHHHHHHcC
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---YDAWFDYLRLLEDEG 261 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---~~~W~~y~~~~~~~g 261 (521)
+..++..+...+...+.......|...+......|+.+.+... |++++...|.+ ..+|..++.++...|
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~--------~~~al~l~~~~~~~~~~~~~lg~~~~~~g 86 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQN--------YYEAMRLEIDPYDRSYILYNIGLIHTSNG 86 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhccccchhhHHHHHHHHHHHHHcC
Confidence 4445555555555556555556777777777778888888766 88888776653 347888888888888
Q ss_pred CHHHHHHHHHHHHHcCCch
Q psy8681 262 NADLIRETYERAIANIPPT 280 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~ 280 (521)
+.++|...|++|+...|..
T Consensus 87 ~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 87 EHTKALEYYFQALERNPFL 105 (168)
T ss_pred CHHHHHHHHHHHHHhCcCc
Confidence 8888888888888877754
No 169
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0031 Score=61.50 Aligned_cols=116 Identities=17% Similarity=0.123 Sum_probs=81.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHH-H--cCCHHHHHHHHHHHHcCCC
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELES-L--LGDMERARAIYELAISQPR 307 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~-~--~g~~e~Ar~ife~al~~~~ 307 (521)
.+.-|..||+|..-|..++..++..|+.+.|...|.+|++..|++. |++... + ......++.+|.+++..++
T Consensus 145 Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~ 224 (287)
T COG4235 145 LETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP 224 (287)
T ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC
Confidence 6777778888888888888888888888888888888888888766 444322 2 2355678888888888766
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8681 308 LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353 (521)
Q Consensus 308 ~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~ 353 (521)
.+.....+. ..-...+|++..|...++.+|...|-..-|...+.
T Consensus 225 ~~iral~lL--A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 225 ANIRALSLL--AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred ccHHHHHHH--HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 553333332 33345788888888888888888764444544443
No 170
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.58 E-value=0.0079 Score=58.29 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=46.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
....|+++.|+.. +.++ ..+| + ....+.++..+.+.++++.|...|++.+...|+++..+.++...+
T Consensus 42 ~~~~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 42 KLQDGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HHHCCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 3445677777777 7888 8888 4 233466666777788888888888888888887655555554444
No 171
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0024 Score=62.19 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=41.2
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYE 271 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~e 271 (521)
-|..+|.+. +-|..++......|+...+... |.+++.+.|.++++|..|+..+.-+. ...+++.+|.
T Consensus 148 ~L~~nP~d~--egW~~Lg~~ym~~~~~~~A~~A--------Y~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 148 HLQQNPGDA--EGWDLLGRAYMALGRASDALLA--------YRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHhCCCCc--hhHHHHHHHHHHhcchhHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 333344443 3444444444444444444433 44444444444444444444433221 1233444444
Q ss_pred HHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 272 RAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 272 rAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
+|+...|.+. ++.-....|++..|...++..+.
T Consensus 218 ~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 218 QALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4444444433 22223334444444444444444
No 172
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.53 E-value=0.0025 Score=65.78 Aligned_cols=116 Identities=16% Similarity=0.200 Sum_probs=101.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChH
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~ 329 (521)
.++.++...++++.|+.+|++..+..|... ++.+....++..+|..++..++...|.+ ..++...+.|+...++++
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d--~~LL~~Qa~fLl~k~~~~ 251 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQD--SELLNLQAEFLLSKKKYE 251 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhcCCHH
Confidence 345555667899999999999999998865 6777888899999999999999977654 678889999999999999
Q ss_pred HHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q psy8681 330 KVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFE 372 (521)
Q Consensus 330 ~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vfe 372 (521)
.|..+.++++...| +-..|..++..+...|+ ++.|...+.
T Consensus 252 lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d---~e~ALlaLN 292 (395)
T PF09295_consen 252 LALEIAKKAVELSPSEFETWYQLAECYIQLGD---FENALLALN 292 (395)
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhcCC---HHHHHHHHh
Confidence 99999999999998 57899999999999999 999886655
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.51 E-value=0.00024 Score=56.65 Aligned_cols=82 Identities=18% Similarity=0.182 Sum_probs=63.7
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHH
Q psy8681 289 LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLA 367 (521)
Q Consensus 289 ~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~A 367 (521)
.|+++.|..+|++++...|.+....+|..++..+.+.|++++|..++++ +...+ ++.....+|..+...|. +++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~---y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGK---YEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT----HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCC---HHHH
Confidence 5788888999999888554321345777778888899999999999999 55544 56777778999999998 9999
Q ss_pred HHHHHHH
Q psy8681 368 RRVFERA 374 (521)
Q Consensus 368 R~vferA 374 (521)
+.+|++|
T Consensus 78 i~~l~~~ 84 (84)
T PF12895_consen 78 IKALEKA 84 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHhcC
Confidence 9999876
No 174
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.48 E-value=0.078 Score=53.43 Aligned_cols=243 Identities=16% Similarity=0.108 Sum_probs=133.6
Q ss_pred HHHHhcCChhhhhhhcC----CCcH-----------HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChh
Q psy8681 65 AMEEKQGNKIGEEGANK----ENEE-----------EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVS 127 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife----~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~ 127 (521)
+.-...|+++.||+-|+ +|.. ..+.|..+.|+.+ +++- ..-|. ...|.....-.+..|+.+
T Consensus 128 Qaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa--~~Ap~l~WA~~AtLe~r~~~gdWd 205 (531)
T COG3898 128 QAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAA--EKAPQLPWAARATLEARCAAGDWD 205 (531)
T ss_pred HHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHH--hhccCCchHHHHHHHHHHhcCChH
Confidence 66678899999999999 6765 4468889999999 9988 88884 566777777777788999
Q ss_pred HHHHHHHHHHHhc--CCcccc-HH-HHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 128 GARKVYERAVEFF--GEENLD-EK-LFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 128 ~Ar~vye~Al~~~--~~~~~~-~~-lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
.|.++.+...... ..+... .. +.+.---++.-. .+...|+..-..+++..|.-.
T Consensus 206 ~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld----------------------adp~~Ar~~A~~a~KL~pdlv 263 (531)
T COG3898 206 GALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD----------------------ADPASARDDALEANKLAPDLV 263 (531)
T ss_pred HHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc----------------------CChHHHHHHHHHHhhcCCccc
Confidence 9998888776642 100000 00 000000000000 044556666666666655543
Q ss_pred HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHH
Q psy8681 204 TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA 283 (521)
Q Consensus 204 ~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a 283 (521)
...+--+-. .-..|+.-..-.+ +|.+-+..|+ +++|..|... +.|+ .+..-++|+-..
T Consensus 264 Paav~AAra--lf~d~~~rKg~~i--------lE~aWK~ePH-P~ia~lY~~a--r~gd--ta~dRlkRa~~L------- 321 (531)
T COG3898 264 PAAVVAARA--LFRDGNLRKGSKI--------LETAWKAEPH-PDIALLYVRA--RSGD--TALDRLKRAKKL------- 321 (531)
T ss_pred hHHHHHHHH--HHhccchhhhhhH--------HHHHHhcCCC-hHHHHHHHHh--cCCC--cHHHHHHHHHHH-------
Confidence 222222222 2233443333333 5555555554 5566555543 2332 222222222110
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-CCch
Q psy8681 284 ELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSS-GDED 362 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~-g~~~ 362 (521)
....+.+ ...-..-...-...|++..||.--+.+....|...+++.++..+... |+
T Consensus 322 -------------------~slk~nn--aes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGD-- 378 (531)
T COG3898 322 -------------------ESLKPNN--AESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGD-- 378 (531)
T ss_pred -------------------HhcCccc--hHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCc--
Confidence 0011111 11122223333356777777777777777777777777777777654 55
Q ss_pred hhHHHHHHHHHHHHH
Q psy8681 363 SVSLARRVFERANQA 377 (521)
Q Consensus 363 ~~~~AR~vferAl~~ 377 (521)
-.++|.++-+|+..
T Consensus 379 -qg~vR~wlAqav~A 392 (531)
T COG3898 379 -QGKVRQWLAQAVKA 392 (531)
T ss_pred -hHHHHHHHHHHhcC
Confidence 67777777777754
No 175
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00027 Score=53.61 Aligned_cols=64 Identities=14% Similarity=0.098 Sum_probs=54.2
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAK 155 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~ 155 (521)
+..|+++.|..+ ++++ ..+| +..+++.++.++...|++++|+.++++++...|+ ++.++..+++
T Consensus 2 l~~~~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~---~~~~~~l~a~ 67 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKAL--QRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD---NPEYQQLLAQ 67 (68)
T ss_dssp HHTTHHHHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT---HHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC---HHHHHHHHhc
Confidence 467899999999 9999 9999 8999999999999999999999999999998763 4555555443
No 176
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=97.37 E-value=0.00029 Score=68.17 Aligned_cols=92 Identities=15% Similarity=0.192 Sum_probs=78.9
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
.|+. ..+| ++.+|..|+.+-...|.+...-.+|..++...| .+.++|+.-+.++....
T Consensus 97 ~R~t--nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP---~nvdlWI~~c~~e~~~~---------------- 155 (435)
T COG5191 97 YRST--NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHP---LNVDLWIYCCAFELFEI---------------- 155 (435)
T ss_pred ehhh--hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceeeeeeccchhhhh----------------
Confidence 3444 6677 799999999999999999999999999999854 67889998887775443
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY 218 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~ 218 (521)
++++.+|.+|.++|..+|.+. .+|..|..||..+
T Consensus 156 -----ani~s~Ra~f~~glR~N~~~p--~iw~eyfr~El~y 189 (435)
T COG5191 156 -----ANIESSRAMFLKGLRMNSRSP--RIWIEYFRMELMY 189 (435)
T ss_pred -----ccHHHHHHHHHhhhccCCCCc--hHHHHHHHHHHHH
Confidence 289999999999999999887 8999999998765
No 177
>PRK11906 transcriptional regulator; Provisional
Probab=97.37 E-value=0.0091 Score=61.77 Aligned_cols=131 Identities=9% Similarity=0.031 Sum_probs=92.0
Q ss_pred ChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 125 FVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 125 ~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
....|..+|.+|+..-+-+|.. +..|.++..+-.... -+.. .......|+.+-++|++..|.+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~-g~~~--------------~~~~~~~a~~~A~rAveld~~D 337 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALH-GKSE--------------LELAAQKALELLDYVSDITTVD 337 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHh-cCCC--------------chHHHHHHHHHHHHHHhcCCCC
Confidence 3567889999999332223333 334444444433221 0000 1126778899999999999998
Q ss_pred hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 203 ~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.......+++.+. .|+.+.+... |++|+..+|+...+|..++.++.-.|+.++|+..+++|+...|..
T Consensus 338 a~a~~~~g~~~~~--~~~~~~a~~~--------f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~ 405 (458)
T PRK11906 338 GKILAIMGLITGL--SGQAKVSHIL--------FEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR 405 (458)
T ss_pred HHHHHHHHHHHHh--hcchhhHHHH--------HHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence 7434444444343 3446666655 999999999999999999999999999999999999999999964
No 178
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.35 E-value=0.21 Score=50.39 Aligned_cols=49 Identities=18% Similarity=0.096 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc-CCHHHHHHHHhhCchhhhhhh
Q psy8681 364 VSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH-GDDESRAKLNSKLPRRAKKRV 422 (521)
Q Consensus 364 ~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~-G~~~~~~~v~~~~p~~v~krr 422 (521)
+..||.--+.+....|. ..++.-+.++|.-. ||...++..+.+. |+--|
T Consensus 345 ~~~ARa~Aeaa~r~~pr-------es~~lLlAdIeeAetGDqg~vR~wlAqa---v~APr 394 (531)
T COG3898 345 FSAARAKAEAAAREAPR-------ESAYLLLADIEEAETGDQGKVRQWLAQA---VKAPR 394 (531)
T ss_pred hHHHHHHHHHHhhhCch-------hhHHHHHHHHHhhccCchHHHHHHHHHH---hcCCC
Confidence 66666666666665553 45666667777755 9999888887665 66544
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.35 E-value=0.00064 Score=51.49 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=56.4
Q ss_pred hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.|+++.|..+|++++...|.+. .++..++.+....|+.+.|..+ +++++..+|+++..|..++.
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~--~~~~~la~~~~~~g~~~~A~~~--------l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNP--EARLLLAQCYLKQGQYDEAEEL--------LERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSH--HHHHHHHHHHHHTT-HHHHHHH--------HHCCHGGGTTHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCcCHHHHHHHHhc
Confidence 4599999999999999999987 8888999999999999999877 99999999999888776654
No 180
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.33 E-value=0.00078 Score=51.84 Aligned_cols=58 Identities=22% Similarity=0.314 Sum_probs=51.5
Q ss_pred HHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 216 ~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.+.++.+.+..+ +++++..+|.++..|..++.++...|++..|...|+++++..|...
T Consensus 6 ~~~~~~~~A~~~--------~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 6 LQQEDYEEALEV--------LERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HhCCCHHHHHHH--------HHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 456777777766 9999999999999999999999999999999999999999998754
No 181
>KOG0543|consensus
Probab=97.24 E-value=0.0076 Score=60.92 Aligned_cols=30 Identities=30% Similarity=0.239 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
.-..-++.+.+.|++..|..-|++|+..++
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~ 239 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLE 239 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhh
Confidence 344556778888999999999999999865
No 182
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.19 E-value=0.00049 Score=44.68 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=30.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
|+++|+.+|+++.+|+.++.++...|+.++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 89999999999999999999999999999886
No 183
>KOG2053|consensus
Probab=97.17 E-value=0.53 Score=52.28 Aligned_cols=219 Identities=11% Similarity=0.086 Sum_probs=137.4
Q ss_pred HHhcccchhhHHH-HhhhccCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.+..+++..|... .+.+ ..||+ .-.-..-+-...+.|..++|-.+++. +...+. .+......+-.+....+
T Consensus 19 ~ld~~qfkkal~~~~kll--kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~~~~--~D~~tLq~l~~~y~d~~-- 91 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLL--KKHPNALYAKVLKALSLFRLGKGDEALKLLEA-LYGLKG--TDDLTLQFLQNVYRDLG-- 91 (932)
T ss_pred HhhhHHHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hccCCC--CchHHHHHHHHHHHHHh--
Confidence 4556889999999 9999 99996 44444445557788999999955554 333332 24555566666777776
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
.++.|..+|++++...|.... ..++.+|+.- +++..-..+ ....|. .
T Consensus 92 --------------------~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~----~~yk~qQka----a~~LyK----~ 139 (932)
T KOG2053|consen 92 --------------------KLDEAVHLYERANQKYPSEELLYHLFMAYVRE----KSYKKQQKA----ALQLYK----N 139 (932)
T ss_pred --------------------hhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHH----HHHHHHHHH----HHHHHH----h
Confidence 899999999999999998431 2344455432 221111111 001132 5
Q ss_pred CCCCHHHHHHHHHHHHHcC-C---------HHHHHHHHHHHHHcC-Cchh------HHHHHHHcCCHHHHHHHHHHHHc-
Q psy8681 243 NPNNYDAWFDYLRLLEDEG-N---------ADLIRETYERAIANI-PPTK------FAELESLLGDMERARAIYELAIS- 304 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g-~---------~~~Ar~~~erAl~~~-P~~~------~a~le~~~g~~e~Ar~ife~al~- 304 (521)
.|.++-..|..+.+.++.- . ..-|...++..+..- +-.. |......+|.+++|..++..-+.
T Consensus 140 ~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~ 219 (932)
T KOG2053|consen 140 FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAE 219 (932)
T ss_pred CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6776555555555554431 1 233455555555433 1111 55556678999999999966544
Q ss_pred -CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH
Q psy8681 305 -QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV 345 (521)
Q Consensus 305 -~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~ 345 (521)
.++. +..+-..-.++....+.+.+.-.+-.+++...++.
T Consensus 220 ~l~~~--~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 220 KLTSA--NLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred hcccc--chHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc
Confidence 2222 23444566788888999999999999999887653
No 184
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.16 E-value=0.029 Score=50.92 Aligned_cols=131 Identities=12% Similarity=0.093 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-chh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIP-PTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFE 322 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P-~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e 322 (521)
-...++..+...|+..+|+..|++++.-.= .+. .+......++...|...++...+-+|---++.--..|...+
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l 170 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL 170 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence 346678888899999999999999988532 222 45556678999999999999988543222233445677778
Q ss_pred HhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHHhc
Q psy8681 323 VGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD-EDSVSLARRVFERANQALK 379 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~-~~~~~~AR~vferAl~~~~ 379 (521)
.-.|.+..|+..|+-++...|.+..-+.|+.|+.++|. .+.....+.+++++....|
T Consensus 171 aa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~ 228 (251)
T COG4700 171 AAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRP 228 (251)
T ss_pred HhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcch
Confidence 88999999999999999999999999999999999994 3445556677777765544
No 185
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.15 E-value=0.0019 Score=49.62 Aligned_cols=59 Identities=22% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 321 FEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 321 ~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.+.+.++++.|..++++++...| ++.+|..+|.++...|+ +..|+..|++++...|+++
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~---~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR---YEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc---HHHHHHHHHHHHHHCCCcH
Confidence 44578888888888888888887 67888888888888888 8889999999988888764
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.12 E-value=0.0096 Score=50.89 Aligned_cols=96 Identities=17% Similarity=0.043 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCh
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~ 328 (521)
+++..+..+...|+.++|..+|++|+...+... .....+..+...+...|++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~----------------------------~~~~a~i~lastlr~LG~~ 54 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGA----------------------------DRRRALIQLASTLRNLGRY 54 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch----------------------------HHHHHHHHHHHHHHHcCCH
Confidence 345555555556666666666666655432211 0123344444445555555
Q ss_pred HHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 329 DKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 329 ~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
++|..+++.++..+| +..++..++..+...|. .++|..++-.++
T Consensus 55 deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr---~~eAl~~~l~~l 102 (120)
T PF12688_consen 55 DEALALLEEALEEFPDDELNAALRVFLALALYNLGR---PKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC---HHHHHHHHHHHH
Confidence 555555555555443 23344444444444454 555555554444
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=97.08 E-value=0.014 Score=52.21 Aligned_cols=83 Identities=13% Similarity=0.082 Sum_probs=73.0
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCC
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD 291 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~ 291 (521)
+.|+.+.|+.+ |.-....+|.+++.|+.++..+...++++.|...|..|....++++ .+.....+|+
T Consensus 49 ~~Gk~~eA~~~--------F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 49 NQGRLDEAETF--------FRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HCCCHHHHHHH--------HHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence 67999999877 9989999999999999999999999999999999999998766554 4677888899
Q ss_pred HHHHHHHHHHHHcCCC
Q psy8681 292 MERARAIYELAISQPR 307 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~ 307 (521)
.+.|+..|+.++..+.
T Consensus 121 ~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 121 AAKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHHhCcc
Confidence 9999999999988653
No 188
>KOG3785|consensus
Probab=97.06 E-value=0.1 Score=51.84 Aligned_cols=48 Identities=15% Similarity=0.029 Sum_probs=34.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
+..+|+.++.|. .|++++|..+|.-+... +.....+|..++-...-.|
T Consensus 58 ~~~lWia~C~fh--LgdY~~Al~~Y~~~~~~---~~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 58 SLQLWIAHCYFH--LGDYEEALNVYTFLMNK---DDAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHHHHHHHh--hccHHHHHHHHHHHhcc---CCCCcccchhHHHHHHHHH
Confidence 467899888775 57999999999988874 2235677877765444344
No 189
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.99 E-value=0.0019 Score=44.56 Aligned_cols=43 Identities=16% Similarity=0.070 Sum_probs=38.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAK 155 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~ 155 (521)
+.+|..++..+...|++++|+.+|+++++..| .++.+|..++.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P---~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDP---DDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CCHHHHHHhhh
Confidence 36799999999999999999999999999966 47889988774
No 190
>PRK15331 chaperone protein SicA; Provisional
Probab=96.93 E-value=0.035 Score=49.74 Aligned_cols=90 Identities=12% Similarity=0.004 Sum_probs=75.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCc
Q psy8681 283 AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDE 361 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~ 361 (521)
+.-....|+++.|..+|...+-..+.+ ...|..++......+++++|..+|..+....+ ++......+......|+
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~n--~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~- 120 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFYN--PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK- 120 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC-
Confidence 333457899999999999988866654 57899999999999999999999999988763 55566777888888888
Q ss_pred hhhHHHHHHHHHHHHH
Q psy8681 362 DSVSLARRVFERANQA 377 (521)
Q Consensus 362 ~~~~~AR~vferAl~~ 377 (521)
...|+..|+-++..
T Consensus 121 --~~~A~~~f~~a~~~ 134 (165)
T PRK15331 121 --AAKARQCFELVNER 134 (165)
T ss_pred --HHHHHHHHHHHHhC
Confidence 99999999999984
No 191
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.92 E-value=0.3 Score=44.28 Aligned_cols=141 Identities=21% Similarity=0.138 Sum_probs=74.1
Q ss_pred HHHHHhhCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCCc--hh------HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 236 YEEEVNSNPNNYDAWFDYLR-LLEDEGNADLIRETYERAIANIPP--TK------FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~-~~~~~g~~~~Ar~~~erAl~~~P~--~~------~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
+..++...+.+...+..... .+...|+.+.+...|.+++...|. .. ........++.+.|...+..++...
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 197 (291)
T COG0457 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN 197 (291)
T ss_pred HHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC
Confidence 44444444443333333333 455555566666666665554331 11 1112234556666666666666643
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
+.. ....+......+...+.+..|...+..++...+. ...+...+......+. .+.+...+.+++...|.
T Consensus 198 ~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 198 PDD-DAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGR---YEEALEALEKALELDPD 268 (291)
T ss_pred ccc-chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCC---HHHHHHHHHHHHHhCcc
Confidence 321 1234555555555666777777777777776653 4444444443334444 67777777777776664
No 192
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.92 E-value=0.31 Score=44.25 Aligned_cols=218 Identities=19% Similarity=0.114 Sum_probs=152.9
Q ss_pred ccchhhHHH-HhhhccCCCCC---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 90 KERDREEED-ERKDEGDRDSD---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
+.+..+... ..++ ...+. .......+......+.+..+...+..++.. ...+.....+...+.+....+
T Consensus 37 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---- 109 (291)
T COG0457 37 GELAEALELLEEAL--ELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-ELLPNLAEALLNLGLLLEALG---- 109 (291)
T ss_pred hhHHHHHHHHHHHH--hcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHHHh----
Confidence 455556666 6666 55553 567778888888888899999888888863 001234566777777776666
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH-HHHHcCChhhHHHHHHhhHHHHHHHHHhhCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTI-HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~-~e~~~G~~~~a~~~i~~krr~~ye~al~~~P 244 (521)
.+..+..++..++...+... ..+..... .....|....+... |++++..+|
T Consensus 110 ------------------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~--------~~~~~~~~~ 161 (291)
T COG0457 110 ------------------KYEEALELLEKALALDPDPD--LAEALLALGALYELGDYEEALEL--------YEKALELDP 161 (291)
T ss_pred ------------------hHHHHHHHHHHHHcCCCCcc--hHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCC
Confidence 78889999999988766653 22222222 45677888777766 888888776
Q ss_pred ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch-h-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 245 ---NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-K-----FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 245 ---~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~-~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
............+...++...+...+.+++...|.. . .+..+...|.+..|...+..++...+. ....+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~ 239 (291)
T COG0457 162 ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--NAEAL 239 (291)
T ss_pred CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--cHHHH
Confidence 345566666666677888999999999999988872 2 455667778899999999999886543 12233
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
..........+.++.+...+.+++...+.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 240 YNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 33333333777899999999999988765
No 193
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.91 E-value=0.027 Score=48.08 Aligned_cols=84 Identities=18% Similarity=0.098 Sum_probs=56.4
Q ss_pred hHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC---CHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKD-RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN---NYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~-~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~---~~~~W~~y~~~~~~ 259 (521)
+.++|..+|++++...+.. .....+..++......|..+.+..+ ++.++...|. +..++..++..+..
T Consensus 16 ~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~--------L~~~~~~~p~~~~~~~l~~f~Al~L~~ 87 (120)
T PF12688_consen 16 REEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALAL--------LEEALEEFPDDELNAALRVFLALALYN 87 (120)
T ss_pred CHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCCCccccHHHHHHHHHHHHH
Confidence 7888888888888753322 2235666666677777777777665 7777777666 55666666666677
Q ss_pred cCCHHHHHHHHHHHHH
Q psy8681 260 EGNADLIRETYERAIA 275 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~ 275 (521)
.|+.++|...+-.++.
T Consensus 88 ~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 88 LGRPKEALEWLLEALA 103 (120)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 7777777766666554
No 194
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.89 E-value=0.059 Score=48.98 Aligned_cols=69 Identities=25% Similarity=0.372 Sum_probs=44.7
Q ss_pred HHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHH----HHHHHHHc
Q psy8681 236 YEEEVNSNP--NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERAR----AIYELAIS 304 (521)
Q Consensus 236 ye~al~~~P--~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar----~ife~al~ 304 (521)
++.....+| ..++..+.|++.+...|....|+..|+.++...|.-. |+.+..++|....|+ .+++.+..
T Consensus 147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r 225 (251)
T COG4700 147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKR 225 (251)
T ss_pred HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 333334344 3566667777777777888888888888888777654 777777777655544 44444444
No 195
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.87 E-value=0.0039 Score=48.61 Aligned_cols=70 Identities=17% Similarity=0.143 Sum_probs=54.4
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh---cCCcc-ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhh
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF---FGEEN-LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQ 181 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~---~~~~~-~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~ 181 (521)
|| -..++..++.++...|++++|...|++|+.. .|+.. ....++..++......|
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g-------------------- 60 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG-------------------- 60 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--------------------
Confidence 56 3678999999999999999999999999976 33222 12556667777777777
Q ss_pred hhhHHHHHHHHHHHHhc
Q psy8681 182 YEEHERARVIYKYALDH 198 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~ 198 (521)
+++.|...|+++++.
T Consensus 61 --~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 61 --DYEEALEYYQKALDI 75 (78)
T ss_dssp --HHHHHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHhh
Confidence 999999999999865
No 196
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.79 E-value=0.74 Score=46.73 Aligned_cols=116 Identities=15% Similarity=0.203 Sum_probs=88.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-------Cchh--HHHHHHHcCCHHHHHHHHHHHHc-CCCC----
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-------PPTK--FAELESLLGDMERARAIYELAIS-QPRL---- 308 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-------P~~~--~a~le~~~g~~e~Ar~ife~al~-~~~~---- 308 (521)
.......|+.++.+..+.|.++.|...+.++.... |... ++++.-..|+...|...++..+. ....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~ 221 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDS 221 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccc
Confidence 34567889999999999999999999999988754 2222 67788888999999888887776 1100
Q ss_pred ---------------------------CCcHHHHHHHHHHHHhc------CChHHHHHHHHHHHhcCC-CHHHHHHHHHH
Q psy8681 309 ---------------------------DMPELVWKAYIDFEVGQ------GERDKVRELHERLLERTV-HVKVWMNYAQF 354 (521)
Q Consensus 309 ---------------------------~~~~~lw~~yi~~e~~~------g~~~~Ar~l~eral~~~~-~~~vwi~ya~~ 354 (521)
.....++..++.+.... +..+.+...|..++..+| ..+.|..++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 222 ISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred ccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 00135566666666666 889999999999999987 68899999998
Q ss_pred HHHc
Q psy8681 355 EMSS 358 (521)
Q Consensus 355 e~~~ 358 (521)
....
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 7765
No 197
>KOG1585|consensus
Probab=96.78 E-value=0.26 Score=46.83 Aligned_cols=154 Identities=16% Similarity=0.116 Sum_probs=93.0
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC----CCCCCcHHHHHH
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ----PRLDMPELVWKA 317 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~----~~~~~~~~lw~~ 317 (521)
..|.-.+++..-..++.++|.++.|-..+++|-...- .-+.+.|.++|++++.. ....+...+...
T Consensus 86 klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~le----------nv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 86 KLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALE----------NVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh----------cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 3344455555556677778888887777777654321 34567777777777652 111122345555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhc----C--C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH--hccchhhHHHH
Q psy8681 318 YIDFEVGQGERDKVRELHERLLER----T--V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA--LKASSEKEERV 388 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~----~--~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~--~~~~~~~~~~~ 388 (521)
....+.+...+++|-..|.+-... . + ..+.++..+.......+ +..|..+|+...+. +-.+.+...-.
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~D---yv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHD---YVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHH---HHHHHHHhcchhcCccccChHHHHHHH
Confidence 556666777777777666554322 2 3 34567776666665555 88888888876554 22223323334
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHhh
Q psy8681 389 MLLEAWKEFEAQHGDDESRAKLNSK 413 (521)
Q Consensus 389 ~l~~~~~~fE~~~G~~~~~~~v~~~ 413 (521)
.|+.+|- .||.+++.+|.+.
T Consensus 233 nLL~ayd-----~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 233 NLLTAYD-----EGDIEEIKKVLSS 252 (308)
T ss_pred HHHHHhc-----cCCHHHHHHHHcC
Confidence 5666664 6999999998743
No 198
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.73 E-value=0.016 Score=49.99 Aligned_cols=110 Identities=14% Similarity=0.199 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHcC----ChhhHHHHHHhhHHHHHHHHHhhCCC---------CHHHHHH
Q psy8681 187 RARVIYKYALDHIP-KDRTAEIYKAYTIHEKKYG----DRAGIEDVIVSKRKFQYEEEVNSNPN---------NYDAWFD 252 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P-~~~~~~l~~~~~~~e~~~G----~~~~a~~~i~~krr~~ye~al~~~P~---------~~~~W~~ 252 (521)
..+..|+..|.... .+.+..+|..|+.+...+- ....+..+ +++++..... ...+|+.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~l--------Ler~~~~f~~~~~Y~nD~RylkiWi~ 74 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLEL--------LERCIRKFKDDERYKNDERYLKIWIK 74 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHH--------HHHHHHHHTTSGGGTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHH--------HHHHHHHHhhhHhhcCCHHHHHHHHH
Confidence 45667777777655 4445689999998876552 23334444 8888876443 2467887
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 253 YLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
|+.+.. .+..+|..+....- ....+.+|..|+.++...|++.+|.
T Consensus 75 ya~~~~------~~~~if~~l~~~~I-----------------------------G~~~A~fY~~wA~~le~~~~~~~A~ 119 (126)
T PF08311_consen 75 YADLSS------DPREIFKFLYSKGI-----------------------------GTKLALFYEEWAEFLEKRGNFKKAD 119 (126)
T ss_dssp HHTTBS------HHHHHHHHHHHHTT-----------------------------STTBHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHcc------CHHHHHHHHHHcCc-----------------------------cHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 776532 55666665443211 1124567777777777777777777
Q ss_pred HHHHHHH
Q psy8681 333 ELHERLL 339 (521)
Q Consensus 333 ~l~eral 339 (521)
++|+.+|
T Consensus 120 ~I~~~Gi 126 (126)
T PF08311_consen 120 EIYQLGI 126 (126)
T ss_dssp HHHHHHH
T ss_pred HHHHhhC
Confidence 7777664
No 199
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=96.71 E-value=0.023 Score=51.41 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=20.8
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 234 ~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
..|+.||.++|+..++.+.++..+...+
T Consensus 56 sK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 56 SKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 3488889999998888888888887654
No 200
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.70 E-value=0.0044 Score=42.68 Aligned_cols=42 Identities=14% Similarity=0.326 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.+|..++..+...|+.+.+..+ |+++|..+|+++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~--------~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERL--------LRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCcCCHHHHHHhhh
Confidence 4688899999999999999987 99999999999999999875
No 201
>KOG0543|consensus
Probab=96.70 E-value=0.03 Score=56.72 Aligned_cols=111 Identities=22% Similarity=0.250 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
.-+..+.+.|++..|...|++|+..++... .. +.+.....-. +..+ .+..+-..|+ ..+.+..|
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~------~~-~~ee~~~~~~--~k~~---~~lNlA~c~l----Kl~~~~~A 276 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRR------SF-DEEEQKKAEA--LKLA---CHLNLAACYL----KLKEYKEA 276 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccc------cC-CHHHHHHHHH--HHHH---HhhHHHHHHH----hhhhHHHH
Confidence 445667788889999999999988654221 00 0011111100 0000 0112233333 56677777
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 332 RELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 332 r~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.....++|...| +++....-++.+...|. ++.||..|++|++..|.|
T Consensus 277 i~~c~kvLe~~~~N~KALyRrG~A~l~~~e---~~~A~~df~ka~k~~P~N 324 (397)
T KOG0543|consen 277 IESCNKVLELDPNNVKALYRRGQALLALGE---YDLARDDFQKALKLEPSN 324 (397)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHhhcc---HHHHHHHHHHHHHhCCCc
Confidence 777777777664 67777777777777666 777777777777777766
No 202
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.63 E-value=0.02 Score=55.28 Aligned_cols=94 Identities=7% Similarity=-0.012 Sum_probs=82.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
....|+|..|... ..+| ..+| + +....=++......|+++.|..+|..++..+|+.+..++..+.++......
T Consensus 151 ~~ksgdy~~A~~~F~~fi--~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l 228 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFI--KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL 228 (262)
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence 5667889999999 9999 9999 4 445555688888899999999999999999998777789999999998888
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+ +.+.|+.+|+..++..|...
T Consensus 229 ~----------------------~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 229 G----------------------NTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred c----------------------CHHHHHHHHHHHHHHCCCCH
Confidence 8 99999999999999999875
No 203
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.58 E-value=0.0038 Score=39.44 Aligned_cols=31 Identities=39% Similarity=0.826 Sum_probs=18.5
Q ss_pred CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 326 GERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 326 g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
|+.+.|+.+|++++..+| ++.+|+.|+.|+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 345566666666666654 4666666666553
No 204
>KOG3785|consensus
Probab=96.42 E-value=0.75 Score=45.98 Aligned_cols=176 Identities=13% Similarity=0.108 Sum_probs=116.5
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++.-|+.+++..+....... +..+|.++..| ..|+.+.|... |.-+...+.-+..+|..++-...-.|.
T Consensus 37 DytGAislLefk~~~~~EEE~~~~lWia~C~f--hLgdY~~Al~~--------Y~~~~~~~~~~~el~vnLAcc~FyLg~ 106 (557)
T KOG3785|consen 37 DYTGAISLLEFKLNLDREEEDSLQLWIAHCYF--HLGDYEEALNV--------YTFLMNKDDAPAELGVNLACCKFYLGQ 106 (557)
T ss_pred cchhHHHHHHHhhccchhhhHHHHHHHHHHHH--hhccHHHHHHH--------HHHHhccCCCCcccchhHHHHHHHHHH
Confidence 78889999988886544332 45789988877 46888888766 888887766678889888888777788
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
+.+|..+-.+ +|.+. +-.+-.++|+..+-....+. ++... ...+-.+-+++ -...+.+|+++|.+
T Consensus 107 Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~-LqD~~---EdqLSLAsvhY--mR~HYQeAIdvYkr 176 (557)
T KOG3785|consen 107 YIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSS-LQDTL---EDQLSLASVHY--MRMHYQEAIDVYKR 176 (557)
T ss_pred HHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHH-HhhhH---HHHHhHHHHHH--HHHHHHHHHHHHHH
Confidence 8888877766 45444 34455567777665554433 32111 11222222222 34578999999999
Q ss_pred HHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 338 LLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 338 al~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.|..+|. ..+-+.+|..+.+..- ++-+-.++.--+..+|++.
T Consensus 177 vL~dn~ey~alNVy~ALCyyKlDY---ydvsqevl~vYL~q~pdSt 219 (557)
T KOG3785|consen 177 VLQDNPEYIALNVYMALCYYKLDY---YDVSQEVLKVYLRQFPDST 219 (557)
T ss_pred HHhcChhhhhhHHHHHHHHHhcch---hhhHHHHHHHHHHhCCCcH
Confidence 9988764 3333334444455544 6777777777777788764
No 205
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.37 E-value=0.69 Score=43.29 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~ 392 (521)
+.+.-++....+.|. ++.|-.+|.-|+...--+ -.++|..+++
T Consensus 238 EtyFYL~K~~l~~G~---~~~A~~LfKLaiannVyn-fVE~RyA~~E 280 (297)
T COG4785 238 ETYFYLGKYYLSLGD---LDEATALFKLAVANNVYN-FVEHRYALLE 280 (297)
T ss_pred HHHHHHHHHHhcccc---HHHHHHHHHHHHHHhHHH-HHHHHHHHHH
Confidence 445556666777777 999999999988654322 1244554444
No 206
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.075 Score=51.35 Aligned_cols=90 Identities=20% Similarity=0.220 Sum_probs=53.4
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC---CCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN---PNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~---P~~~~~W~~y~~~~~~ 259 (521)
+|..|...|..-++..|.+. ....+.+++...-..|++.++..+ |..++... |..++..+.++..+..
T Consensus 156 dy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~--------f~~~~k~~P~s~KApdallKlg~~~~~ 227 (262)
T COG1729 156 DYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYI--------FARVVKDYPKSPKAPDALLKLGVSLGR 227 (262)
T ss_pred CHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHH--------HHHHHHhCCCCCCChHHHHHHHHHHHH
Confidence 34444444444444444431 112233333333344444444433 44444443 4567888899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|+.+.|+.+|+..++..|...
T Consensus 228 l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 228 LGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hcCHHHHHHHHHHHHHHCCCCH
Confidence 9999999999999999888754
No 207
>KOG3616|consensus
Probab=96.23 E-value=0.72 Score=50.09 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ 350 (521)
.+...|..|+...|.++.|-+.|-.+++.+.+.-.|..
T Consensus 996 ~vhlk~a~~ledegk~edaskhyveaiklntynitwcq 1033 (1636)
T KOG3616|consen 996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQ 1033 (1636)
T ss_pred cchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhh
Confidence 46667777777888888888888888887766666654
No 208
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.16 E-value=0.23 Score=43.50 Aligned_cols=71 Identities=20% Similarity=0.116 Sum_probs=51.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
+...+..-|.-..+.|++..|++.|+.....+|-.+-. ..+++.++.|. .+ +++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~--~~----------------------~y~ 64 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK--QG----------------------DYE 64 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH--cc----------------------CHH
Confidence 45667777778888889999999988888887643333 44555554443 34 888
Q ss_pred HHHHHHHHHHhcCChhh
Q psy8681 187 RARVIYKYALDHIPKDR 203 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~ 203 (521)
.|+..|++-++..|.+.
T Consensus 65 ~A~a~~~rFirLhP~hp 81 (142)
T PF13512_consen 65 EAIAAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHHHHhCCCCC
Confidence 88888888888888764
No 209
>KOG1586|consensus
Probab=96.13 E-value=0.87 Score=43.08 Aligned_cols=176 Identities=17% Similarity=0.168 Sum_probs=104.7
Q ss_pred hhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
+.+++|..+|.+|-....-.+ ....|...+.+..+.|+...+-.. | ...... .
T Consensus 28 ~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~--------Y--------------veA~~c-y 84 (288)
T KOG1586|consen 28 NKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATT--------Y--------------VEAANC-Y 84 (288)
T ss_pred cchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHH--------H--------------HHHHHH-h
Confidence 378888888888755422111 123344445555555554443322 2 222222 2
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----------HHHH-HHHcCCHHHHHHHHHHHHcCCCC----CCcHHHHHHHHHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----------FAEL-ESLLGDMERARAIYELAISQPRL----DMPELVWKAYIDFE 322 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----------~a~l-e~~~g~~e~Ar~ife~al~~~~~----~~~~~lw~~yi~~e 322 (521)
+.+++.+|..++++||.+..... .+++ |..+.+++.|...|+.+-..-.. .....-...-.++-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 44578888888888887654432 4444 45668999999999999762111 11123344445666
Q ss_pred HhcCChHHHHHHHHHHHhcC-C------CHHHHH-HHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh
Q psy8681 323 VGQGERDKVRELHERLLERT-V------HVKVWM-NYAQFEMSSGDEDSVSLARRVFERANQALKASSEK 384 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~-~------~~~vwi-~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~ 384 (521)
...+.+.+|+.+|+...... . +++-++ .-+......++ .-.++..+++-.+..|.-.+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D---~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD---EVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc---HHHHHHHHHHHHhcCCccccc
Confidence 77899999999999987754 1 233332 23333333355 777888888888888876543
No 210
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.10 E-value=0.075 Score=46.50 Aligned_cols=107 Identities=9% Similarity=0.057 Sum_probs=66.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHH--HHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFI--AFAKFEE 158 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~--~~a~~e~ 158 (521)
.++.|+|+.|+.. +... ..+| + ...-+.++..+...++++.|+..|++-|++.|.++.-+-++. .++.+..
T Consensus 20 ~l~~~~Y~~A~~~le~L~--~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALD--TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHH--hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 4556788888888 8888 8888 4 455666677777889999999999999999987664433333 3334443
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
..+ .+....+. --..+....|..-|+..+...|.+.
T Consensus 98 ~~~-~~~~~~~~--------drD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 98 DEG-SLQSFFRS--------DRDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred hhh-HHhhhccc--------ccCcHHHHHHHHHHHHHHHHCcCCh
Confidence 322 00000000 0000134566667777777777653
No 211
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.07 E-value=1.5 Score=42.26 Aligned_cols=73 Identities=16% Similarity=-0.007 Sum_probs=52.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..|..-|.-+.+.|++++|...|+......|-.+-...+-+.++-..-..+ +++.|
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~----------------------~y~~A 90 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG----------------------EYDLA 90 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc----------------------cHHHH
Confidence 36678888888888889999999998888876644434444444433333334 88888
Q ss_pred HHHHHHHHhcCChhh
Q psy8681 189 RVIYKYALDHIPKDR 203 (521)
Q Consensus 189 r~iy~~aL~~~P~~~ 203 (521)
+...++-+...|.+.
T Consensus 91 ~~~~drFi~lyP~~~ 105 (254)
T COG4105 91 LAYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHHhCCCCC
Confidence 888888888888765
No 212
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.05 E-value=1.3 Score=41.49 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=114.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHH-----cCCHHHHHHHHHHHHcCCC
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESL-----LGDMERARAIYELAISQPR 307 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~-----~g~~e~Ar~ife~al~~~~ 307 (521)
|..|.+++.+.|..++++.-++-++...|+++.|.++|...+...|...|+.+-.. .|.+.-|..-|..--+.+|
T Consensus 85 R~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~ 164 (297)
T COG4785 85 RNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP 164 (297)
T ss_pred hhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC
Confidence 34599999999999999999999999999999999999999999999887776432 4788888888888777777
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHH-HHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHH
Q psy8681 308 LDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN-YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE 386 (521)
Q Consensus 308 ~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~-ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~ 386 (521)
.++.-.+|.-.+ |.+....+....+.+|+-.. +..-|=- ++.|....-. -...|+++.....++..-
T Consensus 165 ~DPfR~LWLYl~--E~k~dP~~A~tnL~qR~~~~--d~e~WG~~iV~~yLgkiS------~e~l~~~~~a~a~~n~~~-- 232 (297)
T COG4785 165 NDPFRSLWLYLN--EQKLDPKQAKTNLKQRAEKS--DKEQWGWNIVEFYLGKIS------EETLMERLKADATDNTSL-- 232 (297)
T ss_pred CChHHHHHHHHH--HhhCCHHHHHHHHHHHHHhc--cHhhhhHHHHHHHHhhcc------HHHHHHHHHhhccchHHH--
Confidence 776678887554 22333334444566777655 3344422 3333332222 234566666554443211
Q ss_pred HHHHHHHHHHHHH---HcCCHHHHHHHHhhC
Q psy8681 387 RVMLLEAWKEFEA---QHGDDESRAKLNSKL 414 (521)
Q Consensus 387 ~~~l~~~~~~fE~---~~G~~~~~~~v~~~~ 414 (521)
...+-+.|--+-+ ..|+..++..+.+..
T Consensus 233 Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLa 263 (297)
T COG4785 233 AEHLTETYFYLGKYYLSLGDLDEATALFKLA 263 (297)
T ss_pred HHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 1234455544444 458888888887554
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.04 E-value=0.17 Score=52.84 Aligned_cols=148 Identities=14% Similarity=0.079 Sum_probs=101.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------------------------
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------------------------ 281 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------------------------ 281 (521)
|...=.+||..+|++.++|..++.- ....+.++..+|++|++......
T Consensus 187 RIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrR 264 (539)
T PF04184_consen 187 RIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRR 264 (539)
T ss_pred HHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHH
Confidence 4455788999999999998877643 23458889999999887422111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc--
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSS-- 358 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi~ya~~e~~~-- 358 (521)
++..-.++|...+|.+.|...++..|......+....+..+...+.+.++..++.+.=... |. ...+.|...+.+.
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpk-SAti~YTaALLkaRa 343 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPK-SATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCc-hHHHHHHHHHHHHHh
Confidence 4555668899999999999999854432244577777888889999999999999875443 32 2233333333221
Q ss_pred -CC------------chhhHHHHHHHHHHHHHhccch
Q psy8681 359 -GD------------EDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 359 -g~------------~~~~~~AR~vferAl~~~~~~~ 382 (521)
++ ......|.+.+.||++.+|--+
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 11 1123457788999999887643
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.00 E-value=0.03 Score=57.95 Aligned_cols=72 Identities=17% Similarity=0.093 Sum_probs=61.6
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| +...|+.++..+...|++++|...|++||+..|++......|++.+..+..+|
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG---------------------- 126 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYRE---------------------- 126 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC----------------------
Confidence 4457 68999999999999999999999999999997743222256999999998888
Q ss_pred hHHHHHHHHHHHHhc
Q psy8681 184 EHERARVIYKYALDH 198 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~ 198 (521)
++++|...|++|++.
T Consensus 127 r~dEAla~LrrALel 141 (453)
T PLN03098 127 EGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999999986
No 215
>KOG2053|consensus
Probab=95.97 E-value=3.6 Score=45.97 Aligned_cols=201 Identities=17% Similarity=0.162 Sum_probs=113.8
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
..|.|..++|..+ +-.- ...| +..+...+-.++...|..++|..+|++++..+|....-..+|.+|++-..=..
T Consensus 53 l~r~gk~~ea~~~Le~~~--~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~-- 128 (932)
T KOG2053|consen 53 LFRLGKGDEALKLLEALY--GLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKK-- 128 (932)
T ss_pred HHHhcCchhHHHHHhhhc--cCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHH--
Confidence 7788999999977 5543 4444 56677777888888999999999999999998753222344444444221111
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHH-HHHhhHHHHHHHHHhh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED-VIVSKRKFQYEEEVNS 242 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~-~i~~krr~~ye~al~~ 242 (521)
.-..|.++|+ ..|.+. -.+|....-.....-..+.+.. +.+.-+....+..+..
T Consensus 129 --------------------qQkaa~~LyK----~~pk~~-yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~ 183 (932)
T KOG2053|consen 129 --------------------QQKAALQLYK----NFPKRA-YYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK 183 (932)
T ss_pred --------------------HHHHHHHHHH----hCCccc-chHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc
Confidence 2234455554 345443 2344443222222211222211 2222233345555555
Q ss_pred C-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCchh------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 243 N-PN-NYDAWFDYLRLLEDEGNADLIRETYERAIAN-IPPTK------FAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 243 ~-P~-~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~-~P~~~------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
. +- +..--..|...+...|..++|.+++..-+.. .+... -..+...++.+.+.-.+..+++...+.+
T Consensus 184 ~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~Dd---- 259 (932)
T KOG2053|consen 184 KGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGNDD---- 259 (932)
T ss_pred CCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCcc----
Confidence 4 32 2233345556666778888888888655443 22211 2345667788888888877777754322
Q ss_pred HHHHHHH
Q psy8681 314 VWKAYID 320 (521)
Q Consensus 314 lw~~yi~ 320 (521)
|..|++
T Consensus 260 -y~~~~~ 265 (932)
T KOG2053|consen 260 -YKIYTD 265 (932)
T ss_pred -hHHHHH
Confidence 666665
No 216
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.90 E-value=0.07 Score=48.37 Aligned_cols=96 Identities=14% Similarity=0.031 Sum_probs=61.7
Q ss_pred chhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC---C-------hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 92 RDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG---F-------VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g---~-------~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
++.||+. +... ..+| +++.+..||-.+..+. + +++|..-|+.||.+.| .....+..+++....
T Consensus 7 FE~ark~aea~y--~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P---~~hdAlw~lGnA~ts 81 (186)
T PF06552_consen 7 FEHARKKAEAAY--AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP---NKHDALWCLGNAYTS 81 (186)
T ss_dssp HHHHHHHHHHHH--HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH--HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC---chHHHHHHHHHHHHH
Confidence 5778888 8877 8899 8999999998877653 2 4566777777777755 456677777776666
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
++...++.. -....++.|...|++|++..|.+.
T Consensus 82 ~A~l~~d~~-----------~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 82 LAFLTPDTA-----------EAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHH---HH-----------HHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHhhcCChH-----------HHHHHHHHHHHHHHHHHhcCCCcH
Confidence 652111110 011258899999999999999874
No 217
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=95.89 E-value=0.012 Score=37.12 Aligned_cols=31 Identities=42% Similarity=0.686 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
.++.|+.+|++++..+|.+. .+|..|+.|+.
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~--~~W~~y~~~e~ 32 (33)
T smart00386 2 DIERARKIYERALEKFPKSV--ELWLKYAEFEE 32 (33)
T ss_pred cHHHHHHHHHHHHHHCCCCh--HHHHHHHHHHh
Confidence 67899999999999999766 99999999875
No 218
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.89 E-value=0.04 Score=57.08 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=55.7
Q ss_pred CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 199 IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA---WFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 199 ~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~---W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
.|... ..|..++..+...|+++.|... |+++|..+|++..+ |++++..+...|+.++|...|++|+.
T Consensus 71 dP~~a--~a~~NLG~AL~~lGryeEAIa~--------f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 71 DVKTA--EDAVNLGLSLFSKGRVKDALAQ--------FETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444 6777788778888888888876 89999999988754 88899999899999999999999888
Q ss_pred c
Q psy8681 276 N 276 (521)
Q Consensus 276 ~ 276 (521)
.
T Consensus 141 l 141 (453)
T PLN03098 141 D 141 (453)
T ss_pred h
Confidence 6
No 219
>KOG3616|consensus
Probab=95.79 E-value=1.4 Score=47.93 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=48.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC
Q psy8681 283 AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~ 360 (521)
+.-+...|+++.|..+|..+ .+.+.-|+++.+.|.+..|-.+-+.+........+++.-+.-...+|.
T Consensus 772 adhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgk 839 (1636)
T KOG3616|consen 772 ADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGK 839 (1636)
T ss_pred HHHhccchhHHHHHHHHHhc----------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcc
Confidence 45577889999999999764 356667888889999999888877765433345566665555555554
No 220
>KOG4555|consensus
Probab=95.78 E-value=0.11 Score=44.57 Aligned_cols=81 Identities=21% Similarity=0.277 Sum_probs=62.6
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---------HHHHHH
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---------FAELES 287 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---------~a~le~ 287 (521)
..|+.+.+... |.++|...|..+.++.+-+..+.-.|+.++|..-+.+|+....+.. -+.++.
T Consensus 55 E~g~Ld~AlE~--------F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 55 EAGDLDGALEL--------FGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred hccchHHHHHH--------HHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 45777777765 9999999999999999999998888999999999999988754322 345666
Q ss_pred HcCCHHHHHHHHHHHHcC
Q psy8681 288 LLGDMERARAIYELAISQ 305 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~ 305 (521)
.+|+.+.||.-|+.|.+.
T Consensus 127 l~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQL 144 (175)
T ss_pred HhCchHHHHHhHHHHHHh
Confidence 677777777777776553
No 221
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.76 E-value=0.063 Score=41.64 Aligned_cols=64 Identities=16% Similarity=0.171 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C--C---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT---V--H---VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~--~---~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.++..++.++...|++++|...|++++... + + ..++..++.+....|+ ++.|...|++|++.+.
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD---YEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhc
Confidence 456667778889999999999999998763 2 1 4456778888888887 9999999999988753
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.70 E-value=0.15 Score=44.99 Aligned_cols=111 Identities=17% Similarity=0.145 Sum_probs=64.1
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHE 336 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~e 336 (521)
....++...+...+++|+.......+..+.. ..=....+.-+.... ..+...++..+...|+++.|..+++
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-~~W~~~~r~~l~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD-EEWVEPERERLRELY--------LDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-STTHHHHHHHHHHHH--------HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-cHHHHHHHHHHHHHH--------HHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3455677788888888887643221111000 011112222222211 2345556666777888888888888
Q ss_pred HHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 337 RLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 337 ral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+++...| +-.+|..+...+...|+ ...|..+|++....+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~---~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGR---RAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT----HHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHH
Confidence 8888887 46688888888888887 7888888887776654
No 223
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.70 E-value=0.72 Score=46.81 Aligned_cols=122 Identities=16% Similarity=0.184 Sum_probs=86.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE-NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~-~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
....|+..+++..+.|.++.|...+.++....+.. ...+.+.+.++++.-..| +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g----------------------~~~~ 202 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQG----------------------EQEE 202 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcC----------------------CHHH
Confidence 47899999999999999999999999998864321 124677788888887776 4455
Q ss_pred HHHHHHHHHhc-C-------------------------------ChhhHHHHHHHHHHHHHHc------CChhhHHHHHH
Q psy8681 188 ARVIYKYALDH-I-------------------------------PKDRTAEIYKAYTIHEKKY------GDRAGIEDVIV 229 (521)
Q Consensus 188 Ar~iy~~aL~~-~-------------------------------P~~~~~~l~~~~~~~e~~~------G~~~~a~~~i~ 229 (521)
|....+..+.. . .......++..++.|.... ++.+.+...
T Consensus 203 Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~-- 280 (352)
T PF02259_consen 203 AIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKY-- 280 (352)
T ss_pred HHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHH--
Confidence 55554444441 0 0111235666677776666 555555544
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
|..++..+|..+..|..++.++...
T Consensus 281 ------~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 281 ------YKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ------HHHHHHhChhHHHHHHHHHHHHHHH
Confidence 9999999999999999999887643
No 224
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.62 E-value=0.3 Score=41.93 Aligned_cols=111 Identities=20% Similarity=0.321 Sum_probs=75.2
Q ss_pred HHHHHHHH-hh--CCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 233 KFQYEEEV-NS--NPNNYDAWFDYLRLLEDEG----NADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 233 r~~ye~al-~~--~P~~~~~W~~y~~~~~~~g----~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
+..|+..| .. ..+-.+.|..|+....++- .-.....+++++++.+-++. + -.+
T Consensus 5 r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~-------------------~-Ykn 64 (125)
T smart00777 5 RQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDE-------------------R-YKN 64 (125)
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhh-------------------h-hcC
Confidence 45588877 32 2234689999999988642 33445667777666432210 0 001
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
++ -...+|..|+++. +..+++|.-+.... .+...|..||.++...|+ +..|.+||+.|
T Consensus 65 D~--RyLkiWi~ya~~~------~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~---~~~A~~iy~~G 125 (125)
T smart00777 65 DP--RYLKIWLKYADNC------DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGR---YKKADEVYQLG 125 (125)
T ss_pred CH--HHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHcc
Confidence 11 1257899988652 45788999888765 468899999999999998 99999999864
No 225
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.57 E-value=0.031 Score=35.61 Aligned_cols=34 Identities=24% Similarity=0.338 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
+.+|+.++..+...|++++|+..|++++...|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 3679999999999999999999999999999863
No 226
>KOG4340|consensus
Probab=95.46 E-value=1.6 Score=42.84 Aligned_cols=248 Identities=13% Similarity=0.045 Sum_probs=126.8
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
++-.+|+.|+.+ .-.. ...| +-.....++..+-...++..|..+|++.-...|... .-.++. ++-.-..+ .+
T Consensus 21 I~d~ry~DaI~~l~s~~--Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-qYrlY~--AQSLY~A~-i~ 94 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSEL--ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-QYRLYQ--AQSLYKAC-IY 94 (459)
T ss_pred HHHhhHHHHHHHHHHHH--hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-HHHHHH--HHHHHHhc-cc
Confidence 445667777777 6666 7777 555556666666666678888888888777765210 011111 11000000 11
Q ss_pred cccchh----------hHHHH---HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 165 GDRAGI----------EDVIV---SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 165 ~~~~~~----------~~~~l---~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
.+++.+ ...-+ ....++.+++..+|.+.++ .|...........+.+.-+-|+.+.+..-
T Consensus 95 ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~en~Ad~~in~gCllykegqyEaAvqk---- 166 (459)
T KOG4340|consen 95 ADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSENEADGQINLGCLLYKEGQYEAAVQK---- 166 (459)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHh----ccCCCccchhccchheeeccccHHHHHHH----
Confidence 111111 00000 0012333455555554443 44322223333344444456666666544
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH----HHHHHHHcCCchh--------------------------
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE----TYERAIANIPPTK-------------------------- 281 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~----~~erAl~~~P~~~-------------------------- 281 (521)
|+.++...-..+-+-...+-.+.+.++.+.|.+ +.+|.++..|.-.
T Consensus 167 ----FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~e 242 (459)
T KOG4340|consen 167 ----FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVE 242 (459)
T ss_pred ----HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHH
Confidence 888888777777666677777777777776654 4556666666532
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCCC---C-cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCH-HHHHHHH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRLD---M-PELVWKAYIDFEVGQGERDKVRELHERLLERTVHV-KVWMNYA 352 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~~---~-~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~-~vwi~ya 352 (521)
-+.+|.+.|+++.|+..+.. .||.. . +..+.+.-+ ---.+++.....-+.-+|...|.| +.+.++.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtD---mPPRaE~elDPvTLHN~Al--~n~~~~p~~g~~KLqFLL~~nPfP~ETFANlL 317 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTD---MPPRAEEELDPVTLHNQAL--MNMDARPTEGFEKLQFLLQQNPFPPETFANLL 317 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhc---CCCcccccCCchhhhHHHH--hcccCCccccHHHHHHHHhcCCCChHHHHHHH
Confidence 24457788888888876543 33321 1 222332221 111233444444455566667753 3555544
Q ss_pred HHHHH
Q psy8681 353 QFEMS 357 (521)
Q Consensus 353 ~~e~~ 357 (521)
.++.+
T Consensus 318 llyCK 322 (459)
T KOG4340|consen 318 LLYCK 322 (459)
T ss_pred HHHhh
Confidence 44444
No 227
>KOG3081|consensus
Probab=95.44 E-value=1.1 Score=43.32 Aligned_cols=89 Identities=13% Similarity=0.202 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+.+..|--||+..-+..|... .+....+......|+++.|+.+ ++.+|..+|+++++..+++.+-...|.
T Consensus 187 ek~qdAfyifeE~s~k~~~T~--~llnG~Av~~l~~~~~eeAe~l--------L~eaL~kd~~dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSEKTPPTP--LLLNGQAVCHLQLGRYEEAESL--------LEEALDKDAKDPETLANLIVLALHLGK 256 (299)
T ss_pred hhhhhHHHHHHHHhcccCCCh--HHHccHHHHHHHhcCHHHHHHH--------HHHHHhccCCCHHHHHHHHHHHHHhCC
Confidence 356667777777666544443 4555555555566777777766 777777777777777777766666665
Q ss_pred HHHHHH-HHHHHHHcCCchh
Q psy8681 263 ADLIRE-TYERAIANIPPTK 281 (521)
Q Consensus 263 ~~~Ar~-~~erAl~~~P~~~ 281 (521)
..++.. ...+.....|.+.
T Consensus 257 d~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 257 DAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred ChHHHHHHHHHHHhcCCcch
Confidence 544432 3333333445444
No 228
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=95.44 E-value=1.4 Score=45.36 Aligned_cols=141 Identities=14% Similarity=0.143 Sum_probs=96.8
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C---------chh--------------------HH
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-----P---------PTK--------------------FA 283 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-----P---------~~~--------------------~a 283 (521)
..|..+|.+.++.+.+...+...|+...|.++.+||+-.+ | ... |+
T Consensus 31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i 110 (360)
T PF04910_consen 31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI 110 (360)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence 3457799999999999999999999999888888886421 1 111 45
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHH-HHhcCChHHHHHHHHHHHhcC--C----CHHHHHHHHHHH
Q psy8681 284 ELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDF-EVGQGERDKVRELHERLLERT--V----HVKVWMNYAQFE 355 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~-e~~~g~~~~Ar~l~eral~~~--~----~~~vwi~ya~~e 355 (521)
....+.|.+..|.++....+..+|. |+. --.-+|++ -.+.++++--..+++.....+ . -|.+-.+.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 5566889999999999999997665 432 22234554 346788888888888766521 1 122333333333
Q ss_pred HHcCC------------chhhHHHHHHHHHHHHHhcc
Q psy8681 356 MSSGD------------EDSVSLARRVFERANQALKA 380 (521)
Q Consensus 356 ~~~g~------------~~~~~~AR~vferAl~~~~~ 380 (521)
...++ ..+.+.|+..+.+|+..+|.
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 33333 12348999999999999995
No 229
>KOG4340|consensus
Probab=95.33 E-value=1.7 Score=42.57 Aligned_cols=217 Identities=17% Similarity=0.087 Sum_probs=125.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
.++.|+.+...-.+..|.+...-....|.-+ ...++..+-+. |++.-...|.....-+-++..+.+.+.+
T Consensus 25 ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY--~~Q~f~~AA~C--------YeQL~ql~P~~~qYrlY~AQSLY~A~i~ 94 (459)
T KOG4340|consen 25 RYADAIQLLGSELERSPRSRAGLSLLGYCYY--RLQEFALAAEC--------YEQLGQLHPELEQYRLYQAQSLYKACIY 94 (459)
T ss_pred hHHHHHHHHHHHHhcCccchHHHHHHHHHHH--HHHHHHHHHHH--------HHHHHhhChHHHHHHHHHHHHHHHhccc
Confidence 6777777777777777765432222222111 11223344444 8888888888777777777777777877
Q ss_pred HHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
..|..+......+ |.-. -+.+..+.|++..++.+.+..-.... ......-+=+..+.|+++.|.+-|+.
T Consensus 95 ADALrV~~~~~D~-~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~----Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 95 ADALRVAFLLLDN-PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENE----ADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCc----cchhccchheeeccccHHHHHHHHHH
Confidence 7777766554332 2110 12223355777777777766442211 11222223334467888888888888
Q ss_pred HHhcCC-CHHHHHHHHHHHHHcCCchhhHHHH----HHHHHHHHHhccchh----------------hHHHHHHHHHH--
Q psy8681 338 LLERTV-HVKVWMNYAQFEMSSGDEDSVSLAR----RVFERANQALKASSE----------------KEERVMLLEAW-- 394 (521)
Q Consensus 338 al~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR----~vferAl~~~~~~~~----------------~~~~~~l~~~~-- 394 (521)
+++... .+-+-.+.+....+.++ .+.|. .|.+|++...|.-+. +-+-..|.+++
T Consensus 170 AlqvsGyqpllAYniALaHy~~~q---yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 170 ALQVSGYQPLLAYNLALAHYSSRQ---YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHhhcCCCchhHHHHHHHHHhhhh---HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 888764 34444555544444444 55554 456677666655321 11222344443
Q ss_pred -HHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 395 -KEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 395 -~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
..+|-+.||.+.++..+--||-+-
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcc
Confidence 345778899999998888888544
No 230
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.33 E-value=0.54 Score=41.30 Aligned_cols=61 Identities=16% Similarity=0.178 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 207 l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+...++......|+.+.+... +++++..+|.+..+|..++..+...|+...|..+|++...
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~--------~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRL--------LQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH--------HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344445555677888877766 8999999999999999999999999999999999888644
No 231
>KOG3081|consensus
Probab=95.26 E-value=0.72 Score=44.46 Aligned_cols=143 Identities=12% Similarity=0.032 Sum_probs=103.1
Q ss_pred HHHHHhhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYL-RLLEDEGNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~-~~~~~~g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
++..+...-.+-.+|...+ ..+...|++++|..+..+.... -... -..+..++..++-|+...+++.+...-..-..
T Consensus 96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l-E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQ 174 (299)
T KOG3081|consen 96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL-EAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQ 174 (299)
T ss_pred HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHH
Confidence 6666665555555665554 4567788999999888873221 1000 12334466778888888888877543211134
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+-.+|+.+-...+.+..|--+|+.+-.++ |.+.+-...+......++ +++|-.+++.|+...++.+
T Consensus 175 LA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~---~eeAe~lL~eaL~kd~~dp 241 (299)
T KOG3081|consen 175 LAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGR---YEEAESLLEEALDKDAKDP 241 (299)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcC---HHHHHHHHHHHHhccCCCH
Confidence 77788888888888999999999999976 678888889999999998 9999999999999877654
No 232
>KOG4234|consensus
Probab=95.22 E-value=0.2 Score=46.19 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=60.6
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHH---HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTA---EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~---~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
..|.++.|..-|..||..+|..... .+|..-+....+.+..+.+..- .-++|.++|.+..+...-+.++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~d--------csKaiel~pty~kAl~RRAeay 178 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIED--------CSKAIELNPTYEKALERRAEAY 178 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHH--------HHhhHhcCchhHHHHHHHHHHH
Confidence 3358999999999999999875321 2333223233334444444433 6677777887777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHcCCc
Q psy8681 258 EDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+...++.|..-|.+.+...|.
T Consensus 179 ek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 179 EKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HhhhhHHHHHHHHHHHHHhCcc
Confidence 7777777888778777777775
No 233
>KOG4555|consensus
Probab=95.21 E-value=0.47 Score=40.76 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=73.5
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh-CCCC---HHHHHHHHHH
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS-NPNN---YDAWFDYLRL 256 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~-~P~~---~~~W~~y~~~ 256 (521)
..|+++.|...|.++|..+|... +.|+.-++..+-.|+.+.+.+- ++++++. .|.. -.++..-+.+
T Consensus 55 E~g~Ld~AlE~F~qal~l~P~ra--SayNNRAQa~RLq~~~e~ALdD--------Ln~AleLag~~trtacqa~vQRg~l 124 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAPERA--SAYNNRAQALRLQGDDEEALDD--------LNKALELAGDQTRTACQAFVQRGLL 124 (175)
T ss_pred hccchHHHHHHHHHHHHhcccch--HhhccHHHHHHHcCChHHHHHH--------HHHHHHhcCccchHHHHHHHHHHHH
Confidence 44699999999999999999987 7899989988899999888766 8999987 4443 3466677778
Q ss_pred HHHcCCHHHHHHHHHHHHHcCC
Q psy8681 257 LEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P 278 (521)
+...|+.+.||.-|++|-..-.
T Consensus 125 yRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 125 YRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHhCchHHHHHhHHHHHHhCC
Confidence 8889999999999999877543
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.12 E-value=3.3 Score=39.86 Aligned_cols=159 Identities=16% Similarity=0.071 Sum_probs=109.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
.+..|..=+....+.|+.++|...|+......|.+. .+....+.|+++.|+...++-+...|.+. ..-|..
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~-n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP-NADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC-ChhHHH
Confidence 467788888888999999999999999999999876 33445678999999999999999665542 234555
Q ss_pred HHHHHHhc-------CC---hHHHHHHHHHHHhcCCC------HHHH------------HHHHHHHHHcCCchhhHHHHH
Q psy8681 318 YIDFEVGQ-------GE---RDKVRELHERLLERTVH------VKVW------------MNYAQFEMSSGDEDSVSLARR 369 (521)
Q Consensus 318 yi~~e~~~-------g~---~~~Ar~l~eral~~~~~------~~vw------------i~ya~~e~~~g~~~~~~~AR~ 369 (521)
|+..+... .+ ...|..-|+..+..+|+ +..- +..+.|+...|. ...|..
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~---~~AA~n 188 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGA---YVAAIN 188 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcC---hHHHHH
Confidence 55544332 22 34556667788888763 2211 224455666676 899999
Q ss_pred HHHHHHHHhccchhhH-HHHHHHHHHHHHHHHcCCHHHHHHHHh
Q psy8681 370 VFERANQALKASSEKE-ERVMLLEAWKEFEAQHGDDESRAKLNS 412 (521)
Q Consensus 370 vferAl~~~~~~~~~~-~~~~l~~~~~~fE~~~G~~~~~~~v~~ 412 (521)
-|+..++.+++....+ .-..|.++|. ..|-.+.++++.+
T Consensus 189 R~~~v~e~y~~t~~~~eaL~~l~eaY~----~lgl~~~a~~~~~ 228 (254)
T COG4105 189 RFEEVLENYPDTSAVREALARLEEAYY----ALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHhccccccchHHHHHHHHHHHH----HhCChHHHHHHHH
Confidence 9999999988764432 3334445555 4677666666543
No 235
>KOG1130|consensus
Probab=95.12 E-value=1.7 Score=44.40 Aligned_cols=89 Identities=16% Similarity=0.078 Sum_probs=45.4
Q ss_pred HHHcCCHHHHHHHHHHHHcC----CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------CHHHHHHHHHH
Q psy8681 286 ESLLGDMERARAIYELAISQ----PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-------HVKVWMNYAQF 354 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~----~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-------~~~vwi~ya~~ 354 (521)
+.-+|+++.|...|.+++.. .........-.++++.+.-..++.+|+..+.+-|.+.. ....+.+++..
T Consensus 245 hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna 324 (639)
T KOG1130|consen 245 HIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNA 324 (639)
T ss_pred hhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44456666666666555431 11111122233334444455566666666666665531 24445555555
Q ss_pred HHHcCCchhhHHHHHHHHHHHHH
Q psy8681 355 EMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 355 e~~~g~~~~~~~AR~vferAl~~ 377 (521)
....|. .++|....+.++..
T Consensus 325 ~~alg~---h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 325 FNALGE---HRKALYFAELHLRS 344 (639)
T ss_pred HHhhhh---HHHHHHHHHHHHHH
Confidence 555555 66666666655554
No 236
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=95.10 E-value=0.32 Score=41.77 Aligned_cols=106 Identities=19% Similarity=0.344 Sum_probs=75.5
Q ss_pred HHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHhc----CChHHHHHHHHHHHhcC---------C-CHHHHHHHHHHHHHc
Q psy8681 294 RARAIYELAI-SQPRLDMPELVWKAYIDFEVGQ----GERDKVRELHERLLERT---------V-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 294 ~Ar~ife~al-~~~~~~~~~~lw~~yi~~e~~~----g~~~~Ar~l~eral~~~---------~-~~~vwi~ya~~e~~~ 358 (521)
.-+..|+..| .....+.|..+|..||...... |.-+.-..++++++..+ | ..++|+.|+.+.
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 3466777777 3333334678999999985542 34456778889998864 1 378999999864
Q ss_pred CCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHh
Q psy8681 359 GDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNS 412 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~ 412 (521)
+ ..+.+|...... +.......++++|..+-...|+...+..|.+
T Consensus 80 ~------dp~~if~~L~~~----~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 D------EPRELFQFLYSK----GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred C------CHHHHHHHHHHC----CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 2 256777766543 2234567899999999999999999998875
No 237
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.02 E-value=0.06 Score=34.40 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
+.+|...+..+...|+++.|...|++|++..|.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 368999999999999999999999999999986
No 238
>KOG0890|consensus
Probab=94.81 E-value=7.8 Score=48.02 Aligned_cols=256 Identities=12% Similarity=0.102 Sum_probs=155.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
.+.|+.+|++....|.++.|....-.|.+.. -+.+....|++....| +...|.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-----~~~i~~E~AK~lW~~g----------------------d~~~Al 1722 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-----LPEIVLERAKLLWQTG----------------------DELNAL 1722 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-----cchHHHHHHHHHHhhc----------------------cHHHHH
Confidence 7899999999999999999999998888763 3678999999999988 888999
Q ss_pred HHHHHHHhc-CC----------hhhHHHHH----HHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHH
Q psy8681 190 VIYKYALDH-IP----------KDRTAEIY----KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYL 254 (521)
Q Consensus 190 ~iy~~aL~~-~P----------~~~~~~l~----~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~ 254 (521)
.+.+..+.. .| ......++ ..+..+....|+.+. .++ ...|..++...|...+-++.++
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s-~~i-----lk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFES-KDI-----LKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhH-HHH-----HHHHHHHHHHcccccCceeeHH
Confidence 999999855 22 22222333 344556666676433 222 2559999999996555554444
Q ss_pred HHHH------------HcCCHHH---HHHHHHHHHHcCCchh----------HHHH------HHHcCCHH-------HHH
Q psy8681 255 RLLE------------DEGNADL---IRETYERAIANIPPTK----------FAEL------ESLLGDME-------RAR 296 (521)
Q Consensus 255 ~~~~------------~~g~~~~---Ar~~~erAl~~~P~~~----------~a~l------e~~~g~~e-------~Ar 296 (521)
.++. ++|++.. +..-|.+|+...-... |..+ ....|+-+ .--
T Consensus 1797 ~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~~ek~~r~ei~s~~~~~in 1876 (2382)
T KOG0890|consen 1797 KYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISSVEKAPRGEIVSKNLKLIN 1876 (2382)
T ss_pred HHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcccccCChhhhhhhhHHHHH
Confidence 3332 3455555 4445567776433322 1121 11222222 222
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcC--ChHHH---HHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQG--ERDKV---RELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g--~~~~A---r~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
+..+.++...| +...+.+|-++..+.. +-+-+ ..+.-..+..+|+--+|+..+.+-++... ...++..|+
T Consensus 1877 ~~i~~~~~~lp---~Y~f~ta~sQLlSRicH~~~dV~~vl~~II~~l~~~YPqq~lW~~~a~~kS~~p~--R~~R~keIL 1951 (2382)
T KOG0890|consen 1877 SLIEEALEHLP---TYQFYTAYSQLLSRICHPNQDVARVLKHIIAKLVLAYPQQTLWQSAALSKSNVPS--RVERCKEIL 1951 (2382)
T ss_pred HHHHHHHHhCc---chHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCchHHHHHHHHHHhcccHH--HHHHHHHHH
Confidence 33444444332 2345566666655532 22323 33344555567999999999987766532 488899999
Q ss_pred HHHHHHhccchh-hHHHHHHHHHHHHHHHHcCC
Q psy8681 372 ERANQALKASSE-KEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 372 erAl~~~~~~~~-~~~~~~l~~~~~~fE~~~G~ 403 (521)
.++...-++... ..+-..+-+.+..+-..-++
T Consensus 1952 ~k~~~~~~~~~~l~~da~~lTe~L~~lcn~~v~ 1984 (2382)
T KOG0890|consen 1952 TKSRRQKPDYKKLLSDAYDLTEKLTNLCNKKVN 1984 (2382)
T ss_pred HHHHhcCccHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 988776655321 11233444555544433333
No 239
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.78 E-value=0.078 Score=33.67 Aligned_cols=33 Identities=18% Similarity=-0.063 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
+..|..+|..+...|++++|+..|++++...|+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 367999999999999999999999999999763
No 240
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.65 E-value=4.3 Score=39.91 Aligned_cols=124 Identities=13% Similarity=0.097 Sum_probs=90.1
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 115 RELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 115 ~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
.-+.-....|++..|...|..++...|. +..+-..|+......| ..+.|..++..
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~~~---~~~~~~~la~~~l~~g----------------------~~e~A~~iL~~ 193 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAAPE---NSEAKLLLAECLLAAG----------------------DVEAAQAILAA 193 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhCcc---cchHHHHHHHHHHHcC----------------------ChHHHHHHHHh
Confidence 3333445678999999999999998653 4567778888887777 88888877765
Q ss_pred HHhcCChhhHHHHHHH---HHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKA---YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYE 271 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~---~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~e 271 (521)
.|.+....-|.. -+.|..+..+...... +++.+..+|.|.++-+.++..+...|+.+.|.+.+-
T Consensus 194 ----lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~---------l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll 260 (304)
T COG3118 194 ----LPLQAQDKAAHGLQAQIELLEQAAATPEIQD---------LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLL 260 (304)
T ss_pred ----CcccchhhHHHHHHHHHHHHHHHhcCCCHHH---------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555443344444 4556666655554433 888899999999999999999999999988877665
Q ss_pred HHHHc
Q psy8681 272 RAIAN 276 (521)
Q Consensus 272 rAl~~ 276 (521)
-.+..
T Consensus 261 ~~l~~ 265 (304)
T COG3118 261 ALLRR 265 (304)
T ss_pred HHHHh
Confidence 54443
No 241
>KOG4234|consensus
Probab=94.26 E-value=0.86 Score=42.11 Aligned_cols=106 Identities=18% Similarity=0.072 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
...-++-....|+++.|..-|..||...|.-+.. .-+|.+-+.....++ ..+.|+.
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~----------------------k~e~aI~ 155 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR----------------------KWESAIE 155 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh----------------------hHHHHHH
Confidence 3344555567789999999999999998743221 233333344444444 7888899
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
-+-+||++.|.... ....-+.++.+...++.+..- |.+.+..+|..-.+.
T Consensus 156 dcsKaiel~pty~k--Al~RRAeayek~ek~eealeD--------yKki~E~dPs~~ear 205 (271)
T KOG4234|consen 156 DCSKAIELNPTYEK--ALERRAEAYEKMEKYEEALED--------YKKILESDPSRREAR 205 (271)
T ss_pred HHHhhHhcCchhHH--HHHHHHHHHHhhhhHHHHHHH--------HHHHHHhCcchHHHH
Confidence 99999999997652 222222222233334444433 777777777654443
No 242
>KOG2422|consensus
Probab=94.21 E-value=2 Score=45.76 Aligned_cols=139 Identities=19% Similarity=0.199 Sum_probs=97.0
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------CCchh--------------------HHHHHHHcC
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN---------IPPTK--------------------FAELESLLG 290 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~---------~P~~~--------------------~a~le~~~g 290 (521)
|..+|.+.+..++.+.+...+|+.+-+..+.+|+|=. .|.+. |.....+.|
T Consensus 277 L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG 356 (665)
T KOG2422|consen 277 LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRG 356 (665)
T ss_pred eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 3457999999999999999999887777777776542 12221 233345679
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHHHH-----HhcCCCHHHHHHHHHHHHHcCCchhh
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDF-EVGQGERDKVRELHERL-----LERTVHVKVWMNYAQFEMSSGDEDSV 364 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~-e~~~g~~~~Ar~l~era-----l~~~~~~~vwi~ya~~e~~~g~~~~~ 364 (521)
....|.......++..|...+ .....+|++ -.+..+|.=.+.+++.. +...|+-..=+.+|.|+.....+...
T Consensus 357 C~rTA~E~cKlllsLdp~eDP-l~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~r 435 (665)
T KOG2422|consen 357 CWRTALEWCKLLLSLDPSEDP-LGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDR 435 (665)
T ss_pred ChHHHHHHHHHHhhcCCcCCc-hhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhH
Confidence 999999998888886655212 233445554 34667888888888766 22235555556678888776654467
Q ss_pred HHHHHHHHHHHHHhc
Q psy8681 365 SLARRVFERANQALK 379 (521)
Q Consensus 365 ~~AR~vferAl~~~~ 379 (521)
..|+..+.+|+.++|
T Consensus 436 qsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 436 QSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHHHHHHHhCc
Confidence 889999999999998
No 243
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.70 E-value=0.059 Score=34.80 Aligned_cols=31 Identities=6% Similarity=-0.114 Sum_probs=28.2
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHH
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
+++| ..+| ++..|..+|.++...|++++|++
T Consensus 3 ~kAi--e~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 3 KKAI--ELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHH--HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 5889 9999 79999999999999999999863
No 244
>KOG4648|consensus
Probab=93.69 E-value=0.48 Score=47.13 Aligned_cols=108 Identities=14% Similarity=0.052 Sum_probs=65.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYK 193 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~ 193 (521)
..-|+-+.++|.+++|+.+|.+++...|- ++-++.+-+..+.+++ .+..|..-+.
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~---NpV~~~NRA~AYlk~K----------------------~FA~AE~DC~ 155 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH---NPVYHINRALAYLKQK----------------------SFAQAEEDCE 155 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCC---CccchhhHHHHHHHHH----------------------HHHHHHHhHH
Confidence 44566677788999999999999998663 3445555555555555 5666666666
Q ss_pred HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 194 YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 194 ~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
.|+.++-.-. ..|..-+..-...|+...|. ..|+.+|.+.|.+..+--.|+.+
T Consensus 156 ~AiaLd~~Y~--KAYSRR~~AR~~Lg~~~EAK--------kD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 156 AAIALDKLYV--KAYSRRMQARESLGNNMEAK--------KDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred HHHHhhHHHH--HHHHHHHHHHHHHhhHHHHH--------HhHHHHHhhCcccHHHHHHHHHh
Confidence 6665422111 22222223333445444444 34888888888877776666554
No 245
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.28 E-value=0.19 Score=31.94 Aligned_cols=32 Identities=22% Similarity=-0.056 Sum_probs=28.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
+.+|...|..+...|+++.|...|++|+++.|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 36899999999999999999999999999865
No 246
>KOG4648|consensus
Probab=93.28 E-value=0.46 Score=47.27 Aligned_cols=99 Identities=13% Similarity=0.041 Sum_probs=76.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.++|.|++|+.- .+++ ...| ++.+...-+..|.+...+..|..-...|+.+.. .....|..-+..-..+|
T Consensus 107 yFKQgKy~EAIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~---~Y~KAYSRR~~AR~~Lg-- 179 (536)
T KOG4648|consen 107 YFKQGKYEEAIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK---LYVKAYSRRMQARESLG-- 179 (536)
T ss_pred hhhccchhHHHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH---HHHHHHHHHHHHHHHHh--
Confidence 6788999999999 9999 9999 899999999999999999989888888887621 12233333333333344
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTI 213 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~ 213 (521)
.+.+|..-|+++|.+.|.+. +|-..|..
T Consensus 180 --------------------~~~EAKkD~E~vL~LEP~~~--ELkK~~a~ 207 (536)
T KOG4648|consen 180 --------------------NNMEAKKDCETVLALEPKNI--ELKKSLAR 207 (536)
T ss_pred --------------------hHHHHHHhHHHHHhhCcccH--HHHHHHHH
Confidence 88999999999999999876 56555543
No 247
>KOG0985|consensus
Probab=92.87 E-value=21 Score=40.89 Aligned_cols=60 Identities=20% Similarity=0.142 Sum_probs=44.3
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
..+++++|-.. +|+- .+.+|..+++.-.+.|.+.+|..-|-+| +++.-|....+...+.|
T Consensus 1087 ~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyika--------dDps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKA--------DDPSNYLEVIDVASRTG 1147 (1666)
T ss_pred HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhc--------CCcHHHHHHHHHHHhcC
Confidence 35677777777 7654 4678999999999999999999888776 34556666666666555
No 248
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.59 E-value=4.2 Score=42.80 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=97.5
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
+..+...-+++ .+++ .+.| ....|+.++.= ....+.+|..+|.+|++.-.............+.+..... .
T Consensus 180 RERnp~aRIkaA~eAL--ei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~---~ 252 (539)
T PF04184_consen 180 RERNPQARIKAAKEAL--EINPDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH---R 252 (539)
T ss_pred hcCCHHHHHHHHHHHH--HhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh---c
Confidence 44566677777 9999 9999 67888877643 3457899999999999862100000000011111100000 0
Q ss_pred ccchhhHHH----HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 166 DRAGIEDVI----VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 166 ~~~~~~~~~----l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
+.. -...| ++...-..|+..+|.+.|+..++.+|......+...++...-..+....++.++ ..|+..
T Consensus 253 Rdt-~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL-----~kYdDi-- 324 (539)
T PF04184_consen 253 RDT-NVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL-----AKYDDI-- 324 (539)
T ss_pred ccc-chhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH-----HHhccc--
Confidence 000 00011 122223446999999999999988887544466777776666666666666541 113210
Q ss_pred hCCCCHHHHHHHHHHHHH---cCC---------------HHHHHHHHHHHHHcCCchh
Q psy8681 242 SNPNNYDAWFDYLRLLED---EGN---------------ADLIRETYERAIANIPPTK 281 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~---~g~---------------~~~Ar~~~erAl~~~P~~~ 281 (521)
.-|.+ +.+.|...+.+ .++ .-.|.+...||++.+|...
T Consensus 325 ~lpkS--Ati~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 325 SLPKS--ATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred cCCch--HHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 01333 33334444332 111 1236688999999888765
No 249
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=92.56 E-value=0.22 Score=31.19 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
++++.++..+...|+.++|...|++.+...|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 356778888888999999999999999999874
No 250
>KOG4642|consensus
Probab=92.54 E-value=0.51 Score=44.74 Aligned_cols=84 Identities=17% Similarity=0.127 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..|..|...|-+||...|... ..|..-+.-..+..+.+-+... -.+++...|+.....+.++.....+..
T Consensus 24 k~y~~ai~~y~raI~~nP~~~--~Y~tnralchlk~~~~~~v~~d--------crralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINPTVA--SYYTNRALCHLKLKHWEPVEED--------CRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hhhchHHHHHHHHHhcCCCcc--hhhhhHHHHHHHhhhhhhhhhh--------HHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 467888888888888888765 4554433322234444444433 778888888888888888888888888
Q ss_pred HHHHHHHHHHHHHc
Q psy8681 263 ADLIRETYERAIAN 276 (521)
Q Consensus 263 ~~~Ar~~~erAl~~ 276 (521)
++.|+.+++||..+
T Consensus 94 ~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSL 107 (284)
T ss_pred ccHHHHHHHHHHHH
Confidence 88888888888554
No 251
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.35 E-value=0.28 Score=31.93 Aligned_cols=28 Identities=21% Similarity=0.046 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
.|..++.++.+.|++++|..+|+++|.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999998765
No 252
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.27 E-value=4.5 Score=39.78 Aligned_cols=133 Identities=20% Similarity=0.160 Sum_probs=94.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHH---HHHHHHHhcCC
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWK---AYIDFEVGQGE 327 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~---~yi~~e~~~g~ 327 (521)
-....|+...|..+|..++...|... |++.+...|+.+.|..++...-... ...-|. +.|.+..+...
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~----~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQA----QDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc----hhhHHHHHHHHHHHHHHHhc
Confidence 34567788888899999988888764 7788888899999998887643322 122333 35677777777
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHH
Q psy8681 328 RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWK 395 (521)
Q Consensus 328 ~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~ 395 (521)
......+-.++-....++..-+.++..+...|+ .+.|-..+--.+.......+..-|..+++.|-
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~---~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~ 283 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGR---NEAALEHLLALLRRDRGFEDGEARKTLLELFE 283 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcccccCcHHHHHHHHHHH
Confidence 666666555554444489999999999999888 88888777766666544444566777777666
No 253
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.15 E-value=0.27 Score=31.14 Aligned_cols=32 Identities=22% Similarity=0.441 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+|+.++.++...|+.+.|...|+++++..|.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 57899999999999999999999999998773
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=92.09 E-value=12 Score=40.08 Aligned_cols=175 Identities=18% Similarity=0.174 Sum_probs=101.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHH------HHHHHHH----
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWF------DYLRLLE---- 258 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~------~y~~~~~---- 258 (521)
-+|.-+|..+|+.. ...+.+.-=.||++..... +.++.... -+.+-+=+ ..+....
T Consensus 178 G~f~L~lSlLPp~~-----~kll~~vGF~gdR~~GL~~--------L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~ 244 (468)
T PF10300_consen 178 GLFNLVLSLLPPKV-----LKLLSFVGFSGDRELGLRL--------LWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG 244 (468)
T ss_pred HHHHHHHHhCCHHH-----HHHHhhcCcCCcHHHHHHH--------HHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc
Confidence 36777788888753 2222222223666655544 45554421 12222211 1111111
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC-CC-CcHHHHHHHHHHHHhcCChHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR-LD-MPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~-~~-~~~~lw~~yi~~e~~~g~~~~A 331 (521)
...+.+.|..+++......|++. -+.++...|+++.|...|+.++.... .. .+...+-.++-...-.+++++|
T Consensus 245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 23467889999999999999987 47888899999999999999886221 10 0111111122224457999999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHH--HHHHcCCc----hhhHHHHHHHHHHHHH
Q psy8681 332 RELHERLLERTVHVKVWMNYAQ--FEMSSGDE----DSVSLARRVFERANQA 377 (521)
Q Consensus 332 r~l~eral~~~~~~~vwi~ya~--~e~~~g~~----~~~~~AR~vferAl~~ 377 (521)
...|.++++...-.+.+..|.. ++...+.. ...++|...|.++-..
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999998765555555443 34445551 1124555555544433
No 255
>KOG2796|consensus
Probab=91.94 E-value=5.6 Score=38.49 Aligned_cols=44 Identities=18% Similarity=0.090 Sum_probs=25.9
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|.+++..+|.++.+-..-+-.++-.|+...|.+..+.++...|.
T Consensus 275 ~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 275 FTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 55566666666555555555555555666666666666666654
No 256
>KOG4642|consensus
Probab=91.90 E-value=2.2 Score=40.57 Aligned_cols=87 Identities=15% Similarity=0.093 Sum_probs=71.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc---CCC
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS---QPR 307 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~---~~~ 307 (521)
|-++|..+|..+..|.+-+..+++..+++.+..-..+|++..|+.. .+........++.|...+.+|.. ..+
T Consensus 33 y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~ 112 (284)
T KOG4642|consen 33 YSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQP 112 (284)
T ss_pred HHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999999999976 34445566788999999999854 223
Q ss_pred CCCcHHHHHHHHHHH
Q psy8681 308 LDMPELVWKAYIDFE 322 (521)
Q Consensus 308 ~~~~~~lw~~yi~~e 322 (521)
..+...+|..+...-
T Consensus 113 ~~~~~di~~~L~~ak 127 (284)
T KOG4642|consen 113 FTFGDDIPKALRDAK 127 (284)
T ss_pred CCCcchHHHHHHHHH
Confidence 334456888776553
No 257
>KOG1585|consensus
Probab=91.62 E-value=13 Score=35.65 Aligned_cols=203 Identities=12% Similarity=0.052 Sum_probs=102.3
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..+..-+..+...+++++|...+.+|++-.. .+..+|.+--.+| +.+ ... -....+.++..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yE---nnrslfhAAKayE-qaa-mLa--------------ke~~klsEvvd 92 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYE---NNRSLFHAAKAYE-QAA-MLA--------------KELSKLSEVVD 92 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHH---hcccHHHHHHHHH-HHH-HHH--------------HHHHHhHHHHH
Confidence 4455555555566788888888888886532 1233333322222 111 000 00013444444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+|++| ..++..+|..+.+-.. ++++-. ...+.+++.|..+|
T Consensus 93 l~eKA----------------s~lY~E~GspdtAAma--------leKAak---------------~lenv~Pd~AlqlY 133 (308)
T KOG1585|consen 93 LYEKA----------------SELYVECGSPDTAAMA--------LEKAAK---------------ALENVKPDDALQLY 133 (308)
T ss_pred HHHHH----------------HHHHHHhCCcchHHHH--------HHHHHH---------------HhhcCCHHHHHHHH
Confidence 44444 4445577877766543 444432 23455678888888
Q ss_pred HHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHc----CCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 271 ERAIANIPPTK-----------FAELESLLGDMERARAIYELAIS----QPRLDMPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 271 erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~----~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
+|++..+-.+. .+.+...+..++.|-..|.+-.. .......-..+.+.|-.+....++..|..+|
T Consensus 134 qralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~ 213 (308)
T KOG1585|consen 134 QRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCY 213 (308)
T ss_pred HHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 88877654433 22334444555555444444222 1111112233444444444556888888888
Q ss_pred HHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 336 ERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 336 eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
....++.. ...+.-.+..++.. |+ ++.+..|+....
T Consensus 214 r~~~qip~f~~sed~r~lenLL~ayd~-gD---~E~~~kvl~sp~ 254 (308)
T KOG1585|consen 214 RDCSQIPAFLKSEDSRSLENLLTAYDE-GD---IEEIKKVLSSPT 254 (308)
T ss_pred cchhcCccccChHHHHHHHHHHHHhcc-CC---HHHHHHHHcChH
Confidence 88776531 23344444443322 33 666666655443
No 258
>KOG4507|consensus
Probab=90.90 E-value=11 Score=40.50 Aligned_cols=96 Identities=15% Similarity=0.107 Sum_probs=63.3
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHH
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSL 366 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~ 366 (521)
..|+...|.+.+..|+...|.... .-...++++....|-.-.|-.++..+|.+.. .+-.++..+.......+ ++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~---i~~ 694 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKN---ISG 694 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhh---hHH
Confidence 356777777777777664433211 1122344555566777777777777777653 35566777777766666 999
Q ss_pred HHHHHHHHHHHhccchhhHHH
Q psy8681 367 ARRVFERANQALKASSEKEER 387 (521)
Q Consensus 367 AR~vferAl~~~~~~~~~~~~ 387 (521)
|.+.|..|+...|++...++.
T Consensus 695 a~~~~~~a~~~~~~~~~~~~~ 715 (886)
T KOG4507|consen 695 ALEAFRQALKLTTKCPECENS 715 (886)
T ss_pred HHHHHHHHHhcCCCChhhHHH
Confidence 999999999998888654433
No 259
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.59 E-value=0.75 Score=29.04 Aligned_cols=31 Identities=23% Similarity=0.239 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.+|...+..+...|+ ++.|...|+++++..|
T Consensus 2 ~~~~~lg~~y~~~~~---~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGD---YEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTS---HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCC
Confidence 466677777777776 7777777777777665
No 260
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=90.40 E-value=26 Score=37.47 Aligned_cols=103 Identities=22% Similarity=0.240 Sum_probs=77.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---hh------HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP---TK------FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~---~~------~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
..+......|++.-.-+.-++++...|+++.|...|++|+..-.. -. ++-....++++++|...|.+.++.
T Consensus 255 lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 255 LLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 388888899998888888999999999999999999999853221 11 344456789999999999999986
Q ss_pred CCCCCcHHHHHHHHH--HHHhcCCh-------HHHHHHHHHHHh
Q psy8681 306 PRLDMPELVWKAYID--FEVGQGER-------DKVRELHERLLE 340 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~--~e~~~g~~-------~~Ar~l~eral~ 340 (521)
..+. ..+..|+. .+...|+. ++|..+|.++-.
T Consensus 335 s~WS---ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 335 SKWS---KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred cccH---HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 6542 45555554 35556777 777777776654
No 261
>KOG4318|consensus
Probab=90.30 E-value=37 Score=38.50 Aligned_cols=112 Identities=10% Similarity=0.049 Sum_probs=69.3
Q ss_pred HHHhcCChhhhhhhcCCCc-------H------------------------------HHhcccchhhHHH-HhhhccCCC
Q psy8681 66 MEEKQGNKIGEEGANKENE-------E------------------------------EERDKERDREEED-ERKDEGDRD 107 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife~P~-------~------------------------------e~r~g~~e~Ar~~-eral~~~~~ 107 (521)
++...|++..|+.+.+-|. + +.+.|++++|-.+ .+. .+.
T Consensus 660 ~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~---QV~ 736 (1088)
T KOG4318|consen 660 KFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVPLELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKD---QVS 736 (1088)
T ss_pred HHHhcccccchhhccccCcccccCCCccccccCccccHHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhC---cCC
Confidence 4678888888888888221 1 4455666666666 554 345
Q ss_pred CChhhHHHHHHHHHHcC---ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 108 SDTTYGMRELVFEEQNG---FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g---~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
|+...-..++.+..+.. ++.++...-+++-...+..+.+..-+..++.+..+.+ .
T Consensus 737 k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f~ttt~~~~~~a~~a~q~~----------------------q 794 (1088)
T KOG4318|consen 737 KSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLFPTTTCYYEGYAFFATQTE----------------------Q 794 (1088)
T ss_pred cchHHHHHHHHHHHhhchhccchhHHHHHHHHHhcccccccchHhhhhhHHHHhhHH----------------------H
Confidence 66666666666665543 4556666666666655444444555666666665544 5
Q ss_pred HHHHHHHHHHHHhcCChh
Q psy8681 185 HERARVIYKYALDHIPKD 202 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~ 202 (521)
.+.|.++|+++-+..|..
T Consensus 795 kkaAkk~f~r~eeq~~v~ 812 (1088)
T KOG4318|consen 795 KKAAKKCFERLEEQLTVS 812 (1088)
T ss_pred HHHHHHHHHHHHHccCCC
Confidence 567778887776665543
No 262
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.12 E-value=0.61 Score=30.32 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+|..++.++.+.|++++|..+|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467888888888888888888888654
No 263
>KOG2610|consensus
Probab=90.10 E-value=5.4 Score=39.89 Aligned_cols=157 Identities=12% Similarity=-0.034 Sum_probs=90.8
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh-cCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF-FGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~-~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.|++.+|-.. ++.+ ..+| +.-.|..--..+.-.|+...-+..+++.+-. .++-|...-+.-.|+--...+|
T Consensus 116 ~g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g---- 189 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG---- 189 (491)
T ss_pred cccccHHHHHHHHHH--HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc----
Confidence 4667777777 8888 8888 6677777777777778888888888887765 2222222223333333344455
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
-++.|...-++||+++|.+. -...+......-.|........ +.+-...+...-...
T Consensus 190 ------------------~y~dAEk~A~ralqiN~~D~--Wa~Ha~aHVlem~~r~Keg~eF-M~~ted~Wr~s~mla-- 246 (491)
T KOG2610|consen 190 ------------------IYDDAEKQADRALQINRFDC--WASHAKAHVLEMNGRHKEGKEF-MYKTEDDWRQSWMLA-- 246 (491)
T ss_pred ------------------cchhHHHHHHhhccCCCcch--HHHHHHHHHHHhcchhhhHHHH-HHhcccchhhhhHHH--
Confidence 88999999999999998753 2223333444444443332221 000000011111111
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
..-|+-.+-++...+.++.|..+|.+-+-
T Consensus 247 -sHNyWH~Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 247 -SHNYWHTALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred -hhhhHHHHHhhhcccchhHHHHHHHHHHH
Confidence 22345556666667888999999988553
No 264
>PF12854 PPR_1: PPR repeat
Probab=89.67 E-value=0.64 Score=29.89 Aligned_cols=31 Identities=13% Similarity=0.012 Sum_probs=28.5
Q ss_pred CCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q psy8681 106 RDSDTTYGMRELVFEEQNGFVSGARKVYERA 136 (521)
Q Consensus 106 ~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~A 136 (521)
..|+..+|..++..+.+.|++++|.++|+++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4689999999999999999999999999864
No 265
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=89.39 E-value=2.9 Score=33.69 Aligned_cols=46 Identities=15% Similarity=0.208 Sum_probs=39.4
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.++..+..+|.+.++.+.++..+...|+++.|.+.+-..+...|..
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~ 55 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY 55 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 3889999999999999999999999999999999999999887753
No 266
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=89.01 E-value=0.69 Score=27.56 Aligned_cols=32 Identities=25% Similarity=0.290 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+|..++..+...++.+.|...|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 56888888888899999999999999887774
No 267
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=88.85 E-value=31 Score=35.54 Aligned_cols=154 Identities=17% Similarity=0.163 Sum_probs=88.9
Q ss_pred hHHHHHHHHHHHHhcCChhh---HHHHHHHHHHHHHH---cCChhhHHHHHHhhHHHHHHH-HHhhCCCCHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR---TAEIYKAYTIHEKK---YGDRAGIEDVIVSKRKFQYEE-EVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~---~~~l~~~~~~~e~~---~G~~~~a~~~i~~krr~~ye~-al~~~P~~~~~W~~y~~~ 256 (521)
+++.-..+++..-. .|... ...+-..|+-...+ -|+.+.|..+ +.. .....+.+++++-..|+.
T Consensus 156 dydamI~Lve~l~~-~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~i--------l~~~l~~~~~~~~d~~gL~GRI 226 (374)
T PF13281_consen 156 DYDAMIKLVETLEA-LPTCDVANQHNIKFQYAFALNRRNKPGDREKALQI--------LLPVLESDENPDPDTLGLLGRI 226 (374)
T ss_pred hHHHHHHHHHHhhc-cCccchhcchHHHHHHHHHHhhcccCCCHHHHHHH--------HHHHHhccCCCChHHHHHHHHH
Confidence 67777777765433 33211 12455556655555 7999888877 666 444567889999998888
Q ss_pred HHHc---------CCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHH----HHHHHH---HHHH-cCCCCCCcHHHH
Q psy8681 257 LEDE---------GNADLIRETYERAIANIPPTK----FAELESLLGDME----RARAIY---ELAI-SQPRLDMPELVW 315 (521)
Q Consensus 257 ~~~~---------g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e----~Ar~if---e~al-~~~~~~~~~~lw 315 (521)
+-.. ...+.|...|.++....|+.. ++.|....|... +.+.+- ...+ .....+.....|
T Consensus 227 yKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYW 306 (374)
T PF13281_consen 227 YKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYW 306 (374)
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHH
Confidence 7431 136788889999988876533 555555445322 222222 1111 111111123455
Q ss_pred HH--HHHHHHhcCChHHHHHHHHHHHhcCCCHHHH
Q psy8681 316 KA--YIDFEVGQGERDKVRELHERLLERTVHVKVW 348 (521)
Q Consensus 316 ~~--yi~~e~~~g~~~~Ar~l~eral~~~~~~~vw 348 (521)
.. +.....-.|++++|...+++++.. .++.|
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l--~~~~W 339 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKL--KPPAW 339 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhc--CCcch
Confidence 43 344455567778888888777766 35555
No 268
>KOG3824|consensus
Probab=88.61 E-value=1.3 Score=43.54 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=25.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|+.|+...|.++++...|+.+.+...++-+|-.+|-+|+...|.
T Consensus 139 feHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 139 FEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 55555555555555555555555555555555555555555554
No 269
>PF13041 PPR_2: PPR repeat family
Probab=88.53 E-value=1.9 Score=30.08 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHHHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKVWMNYAQF 354 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~vwi~ya~~ 354 (521)
...|...++.+.+.|++++|.++|+++.+.. |+...+..++..
T Consensus 3 ~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~ 47 (50)
T PF13041_consen 3 VVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILING 47 (50)
T ss_pred hHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 4589999999999999999999999999864 777777666543
No 270
>KOG1464|consensus
Probab=88.46 E-value=26 Score=34.18 Aligned_cols=123 Identities=15% Similarity=0.229 Sum_probs=72.6
Q ss_pred HHHHHhh--CCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------------H---HHHHHHcCCH
Q psy8681 236 YEEEVNS--NPNNYDAWF----DYLRLLEDEGNADLIRETYERAIANIPPTK--------------F---AELESLLGDM 292 (521)
Q Consensus 236 ye~al~~--~P~~~~~W~----~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------------~---a~le~~~g~~ 292 (521)
|+..|.. +..+..+|+ .++.++...+.+.....++.+.-..|.... | +.++....+-
T Consensus 128 YeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnN 207 (440)
T KOG1464|consen 128 YETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNN 207 (440)
T ss_pred HHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhccc
Confidence 6655553 456667775 567777766666666666666555444322 3 3566677788
Q ss_pred HHHHHHHHHHHcCCCCCCcHHHHH----HHHHHHHhcCChHHHHHHHHHHHhcC-----CC---HHHHHHHHHHHHHc
Q psy8681 293 ERARAIYELAISQPRLDMPELVWK----AYIDFEVGQGERDKVRELHERLLERT-----VH---VKVWMNYAQFEMSS 358 (521)
Q Consensus 293 e~Ar~ife~al~~~~~~~~~~lw~----~yi~~e~~~g~~~~Ar~l~eral~~~-----~~---~~vwi~ya~~e~~~ 358 (521)
..-..+|+.++.....-+++.+.- .-+.+..+.|.+++|-.=|=.|.+.+ |- .--++-+|.++...
T Consensus 208 KkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS 285 (440)
T KOG1464|consen 208 KKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKS 285 (440)
T ss_pred HHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHc
Confidence 888899999987322212222221 11234556788888887777777764 21 22244456666554
No 271
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=88.38 E-value=15 Score=37.81 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=32.9
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFF 140 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~ 140 (521)
..+| .+++.+.++.++...|+...|-.+.++||=.+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~ 70 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF 70 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6789 89999999999999999999999999998764
No 272
>KOG3824|consensus
Probab=88.30 E-value=2.2 Score=42.04 Aligned_cols=58 Identities=17% Similarity=0.233 Sum_probs=50.8
Q ss_pred HHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 322 EVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
..+.|+.++|..+|+.++...| ++.+.+.|+.|.....+ +-.|-.+|-+|+.+.|.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~---iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNE---IVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhh---hHhhhhhhheeeeeCCCch
Confidence 3467999999999999999987 79999999999888776 9999999999999988764
No 273
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.23 E-value=15 Score=34.08 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=64.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCch
Q psy8681 284 ELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~~-~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~ 362 (521)
.-+...|+++.|...+..++..+... ....+-..........|.++.|..++.......-...+-..-+..+...|+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~-- 174 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGD-- 174 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCc--
Confidence 33567799999999999998754311 122334445556778888888888776543322123333446677778888
Q ss_pred hhHHHHHHHHHHHHHhccc
Q psy8681 363 SVSLARRVFERANQALKAS 381 (521)
Q Consensus 363 ~~~~AR~vferAl~~~~~~ 381 (521)
.+.||.-|++|+..++++
T Consensus 175 -k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 175 -KQEARAAYEKALESDASP 192 (207)
T ss_pred -hHHHHHHHHHHHHccCCh
Confidence 999999999999988654
No 274
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=88.22 E-value=0.63 Score=43.85 Aligned_cols=57 Identities=21% Similarity=0.416 Sum_probs=51.4
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+.|+.+.+-.. |.+++..-|.....|+.++.+.++.|+++.|-..|+..++..|.+.
T Consensus 7 ~~~D~~aaael--------y~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 7 ESGDAEAAAEL--------YNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred ccCChHHHHHH--------HHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 45666766655 9999999999999999999999999999999999999999999865
No 275
>KOG0376|consensus
Probab=88.22 E-value=0.77 Score=47.76 Aligned_cols=114 Identities=14% Similarity=0.058 Sum_probs=81.9
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..++.|..+|-+||+..|... .+|..-+....+.+++..|..- ..++++.+|.....+..-+...+..+.
T Consensus 18 ~~fd~avdlysKaI~ldpnca--~~~anRa~a~lK~e~~~~Al~D--------a~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCA--IYFANRALAHLKVESFGGALHD--------ALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred chHHHHHHHHHHHHhcCCcce--eeechhhhhheeechhhhHHHH--------HHhhhhcCchhhheeeeccHHHHhHHH
Confidence 489999999999999999765 3443333333455666666543 788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 263 ADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
.-+|...|+......|+..++.--..--+.--.+.-|+.++-.+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~ 131 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTP 131 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCC
Confidence 99999999999999998874332211112222334566666543
No 276
>KOG2610|consensus
Probab=87.89 E-value=15 Score=36.82 Aligned_cols=136 Identities=14% Similarity=0.114 Sum_probs=94.3
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCchh--------HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN-IPPTK--------FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~-~P~~~--------~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.+++.|...|.+.-+|..--..+.-+|+...-+..+++.+-. +|+-+ |+--....|.++.|...-.+|++.
T Consensus 125 ~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqi 204 (491)
T KOG2610|consen 125 EWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQI 204 (491)
T ss_pred HHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccC
Confidence 488999999999999988888888889888888888887765 44332 333345789999999999999998
Q ss_pred CCCCCcHHHHHHHH--HHHHhcCChHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 306 PRLDMPELVWKAYI--DFEVGQGERDKVRELHERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 306 ~~~~~~~~lw~~yi--~~e~~~g~~~~Ar~l~eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
++++ .|..-. ..+.-.|.+.++.+...+--..-. ....|-..|.|...-+. ++.|..||++-+-.
T Consensus 205 N~~D----~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~ae---ye~aleIyD~ei~k 276 (491)
T KOG2610|consen 205 NRFD----CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAE---YEKALEIYDREIWK 276 (491)
T ss_pred CCcc----hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccc---hhHHHHHHHHHHHH
Confidence 7765 565544 344456777777776654322111 12223344555555455 88999999887643
No 277
>KOG2471|consensus
Probab=87.45 E-value=42 Score=35.49 Aligned_cols=67 Identities=15% Similarity=0.179 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHhc-C--------C-------hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 184 EHERARVIYKYALDH-I--------P-------KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~-~--------P-------~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
.+.-+..+|.+||.. + | .+++..+....+-..-..|.+..|... |..++...-.++
T Consensus 298 ~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC--------f~~av~vfh~nP 369 (696)
T KOG2471|consen 298 CYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC--------FQKAVHVFHRNP 369 (696)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH--------HHHHHHHHhcCc
Confidence 777777888888852 1 1 112223333333344456777777766 999999999999
Q ss_pred HHHHHHHHHHH
Q psy8681 248 DAWFDYLRLLE 258 (521)
Q Consensus 248 ~~W~~y~~~~~ 258 (521)
.+|+.++..+.
T Consensus 370 rlWLRlAEcCi 380 (696)
T KOG2471|consen 370 RLWLRLAECCI 380 (696)
T ss_pred HHHHHHHHHHH
Confidence 99999998765
No 278
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=87.40 E-value=5.7 Score=42.02 Aligned_cols=81 Identities=17% Similarity=0.053 Sum_probs=63.8
Q ss_pred hhhhhhH-HHHHH---HHHHhcCChhhhhhhcCCCcH----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHc
Q psy8681 53 LKLLEKA-KAWKK---AMEEKQGNKIGEEGANKENEE----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQN 123 (521)
Q Consensus 53 i~~lP~~-~~W~~---~~e~~~gn~~~Ar~ife~P~~----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~ 123 (521)
-+++|.+ +-+.. .+.++.|-.+.|..+-.+|+. .+++|+++.|..+ ... ++...|..+++..+..
T Consensus 287 ~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~~ 360 (443)
T PF04053_consen 287 SNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALRQ 360 (443)
T ss_dssp HHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHHT
T ss_pred hhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHc
Confidence 3577777 55555 677899999999999998887 7889999999988 543 3678999999999999
Q ss_pred CChhHHHHHHHHHHHh
Q psy8681 124 GFVSGARKVYERAVEF 139 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~ 139 (521)
|+++-|..+|.++-..
T Consensus 361 g~~~lAe~c~~k~~d~ 376 (443)
T PF04053_consen 361 GNIELAEECYQKAKDF 376 (443)
T ss_dssp TBHHHHHHHHHHCT-H
T ss_pred CCHHHHHHHHHhhcCc
Confidence 9999999999998544
No 279
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.93 E-value=16 Score=33.39 Aligned_cols=94 Identities=15% Similarity=0.221 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh--HH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEK--EE 386 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~--~~ 386 (521)
..+...++++.+.|+++.|.+.|.++...+. ...+++..+....-.++ +..+.....+|-......++- ..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d---~~~v~~~i~ka~~~~~~~~d~~~~n 113 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGD---WSHVEKYIEKAESLIEKGGDWERRN 113 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHhccchHHHHH
Confidence 4566778888899999999999999888763 36678888888887787 888888888887766554332 23
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 387 RVMLLEAWKEFEAQHGDDESRAKLN 411 (521)
Q Consensus 387 ~~~l~~~~~~fE~~~G~~~~~~~v~ 411 (521)
+..+......+. .|+...+...+
T Consensus 114 rlk~~~gL~~l~--~r~f~~AA~~f 136 (177)
T PF10602_consen 114 RLKVYEGLANLA--QRDFKEAAELF 136 (177)
T ss_pred HHHHHHHHHHHH--hchHHHHHHHH
Confidence 344555544433 46665554444
No 280
>KOG1130|consensus
Probab=86.66 E-value=25 Score=36.36 Aligned_cols=94 Identities=16% Similarity=0.015 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---hh--------HHHHHHHcCCHHHHHHHHHHHHc--CC--CCCCcH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPP---TK--------FAELESLLGDMERARAIYELAIS--QP--RLDMPE 312 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~---~~--------~a~le~~~g~~e~Ar~ife~al~--~~--~~~~~~ 312 (521)
.++.+++..+.=.|+++.|.+.|.+++...-. .. +++.+.-+.+++.|...+.+-+. +. ...-..
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~ 315 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL 315 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 34556666777778888899988887664211 11 45556666778888887776443 11 110112
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
...-+++......|+..+|....+..++.
T Consensus 316 RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 316 RACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 23334456666788888888887777665
No 281
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.39 E-value=33 Score=36.31 Aligned_cols=140 Identities=17% Similarity=0.223 Sum_probs=80.1
Q ss_pred hhHHHHHHHHH--HHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh---------h--CCCCHHH
Q psy8681 183 EEHERARVIYK--YALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN---------S--NPNNYDA 249 (521)
Q Consensus 183 ~~~e~Ar~iy~--~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~---------~--~P~~~~~ 249 (521)
++++.+..+.+ ..+..+|. ......+.|..+.|-.+.|..++... +..|+-||+ . ...++..
T Consensus 275 ~d~~~v~~~i~~~~ll~~i~~----~~~~~i~~fL~~~G~~e~AL~~~~D~-~~rFeLAl~lg~L~~A~~~a~~~~~~~~ 349 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNIPK----DQGQSIARFLEKKGYPELALQFVTDP-DHRFELALQLGNLDIALEIAKELDDPEK 349 (443)
T ss_dssp T-HHH-----HHHHTGGG--H----HHHHHHHHHHHHTT-HHHHHHHSS-H-HHHHHHHHHCT-HHHHHHHCCCCSTHHH
T ss_pred CChhhhhhhhhhhhhcccCCh----hHHHHHHHHHHHCCCHHHHHhhcCCh-HHHhHHHHhcCCHHHHHHHHHhcCcHHH
Confidence 46666655554 33444553 45788889999999888877654211 223444443 2 2357889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChH
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERD 329 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~ 329 (521)
|..++...+..|+++-|..+|+++-.. +.+.-|+...|+.+.-.++-..|......+ ..+..+ .-.|+++
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~---~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n---~af~~~----~~lgd~~ 419 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKDF---SGLLLLYSSTGDREKLSKLAKIAEERGDIN---IAFQAA----LLLGDVE 419 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT-H---HHHHHHHHHCT-HHHHHHHHHHHHHTT-HH---HHHHHH----HHHT-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCc---cccHHHHHHhCCHHHHHHHHHHHHHccCHH---HHHHHH----HHcCCHH
Confidence 999999999999999999988884221 114556777888888888777777654311 122222 1457777
Q ss_pred HHHHHHHH
Q psy8681 330 KVRELHER 337 (521)
Q Consensus 330 ~Ar~l~er 337 (521)
+..+++..
T Consensus 420 ~cv~lL~~ 427 (443)
T PF04053_consen 420 ECVDLLIE 427 (443)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 282
>KOG1308|consensus
Probab=85.23 E-value=1.1 Score=44.64 Aligned_cols=45 Identities=11% Similarity=0.088 Sum_probs=23.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
|-.+|.++|....++-.-+..+...+.+..|+.-|..|+.++|++
T Consensus 137 ~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 137 FTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred cccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 555555555555555555555555555555555555555555543
No 283
>KOG0545|consensus
Probab=85.13 E-value=8.4 Score=36.95 Aligned_cols=93 Identities=15% Similarity=0.186 Sum_probs=58.3
Q ss_pred hhhhhhHHHHHHHHHHHHhcC--------Chhh--------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 179 KFQYEEHERARVIYKYALDHI--------PKDR--------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~--------P~~~--------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
++..+.+.+|...|..|+... |.+. ...++..|.+-....|++-.+.+. ....|..
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh--------~seiL~~ 259 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEH--------CSEILRH 259 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHH--------HHHHHhc
Confidence 566678999999999887542 3321 113444444444344443333322 5556667
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.|.+..+++.-++.+...=+.++|+.-|..++.+.|.
T Consensus 260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 7777777777777777666777777777777777764
No 284
>PF13041 PPR_2: PPR repeat family
Probab=84.95 E-value=4.1 Score=28.35 Aligned_cols=45 Identities=11% Similarity=-0.076 Sum_probs=35.4
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 108 SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
|++..|..++..+.+.|++++|.++|+++.+.-- .++...|..+.
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~--~P~~~Ty~~li 45 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGI--KPDSYTYNILI 45 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Confidence 7888999999999999999999999999997621 23444444443
No 285
>KOG2041|consensus
Probab=84.75 E-value=69 Score=35.44 Aligned_cols=37 Identities=5% Similarity=-0.067 Sum_probs=28.6
Q ss_pred hhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy8681 100 RKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVE 138 (521)
Q Consensus 100 ral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~ 138 (521)
+++ ..+|.+.+|..++..-...-.++.|...|-++-.
T Consensus 684 qfi--EdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d 720 (1189)
T KOG2041|consen 684 QFI--EDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD 720 (1189)
T ss_pred HHH--hcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc
Confidence 456 6788899999999988777777788777777644
No 286
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.40 E-value=35 Score=31.70 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=67.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~ 321 (521)
=+.++..+...++++.|...+..++..-.+.. ++.+...+|.++.|..+++...... + ...+-..-+++
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w--~~~~~elrGDi 168 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-W--AAIVAELRGDI 168 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-H--HHHHHHHhhhH
Confidence 35566677788999999999999887544433 6777788899999998887543321 1 12233344677
Q ss_pred HHhcCChHHHHHHHHHHHhcCCC
Q psy8681 322 EVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 322 e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
+...|+-..||..|+.++...++
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDAS 191 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCC
Confidence 88899999999999999988643
No 287
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=84.13 E-value=2.2 Score=26.42 Aligned_cols=28 Identities=21% Similarity=0.182 Sum_probs=14.2
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..|......|+ .++|+.+|++.+..+|+
T Consensus 5 ~~a~~~~~~g~---~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 5 RLARCYYKLGD---YDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHCH---HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHccC---HHHHHHHHHHHHHHCcC
Confidence 33444444444 55555555555555553
No 288
>KOG1586|consensus
Probab=84.08 E-value=41 Score=32.24 Aligned_cols=82 Identities=18% Similarity=0.145 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH----h-
Q psy8681 261 GNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEV----G- 324 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~----~- 324 (521)
.+++.|+..|+.|-.-..... -+.+-..+|.+.+|..+|+......- +.+..=|..-..|+. +
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~-~n~LLKys~KdyflkAgLChl 206 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL-DNNLLKYSAKDYFLKAGLCHL 206 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cchHHHhHHHHHHHHHHHHhH
Confidence 355666666666654332211 34555678999999999999876321 112223443333321 1
Q ss_pred -cCChHHHHHHHHHHHhcCC
Q psy8681 325 -QGERDKVRELHERLLERTV 343 (521)
Q Consensus 325 -~g~~~~Ar~l~eral~~~~ 343 (521)
.++.-.+...+++.....|
T Consensus 207 ~~~D~v~a~~ALeky~~~dP 226 (288)
T KOG1586|consen 207 CKADEVNAQRALEKYQELDP 226 (288)
T ss_pred hcccHHHHHHHHHHHHhcCC
Confidence 2556666677777777666
No 289
>KOG0890|consensus
Probab=83.32 E-value=1.4e+02 Score=37.86 Aligned_cols=66 Identities=12% Similarity=0.054 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHh-cc
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL-KA 380 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~-~~ 380 (521)
....|..++.+.+..|.++.|....-.|.+.. -+.+.+..|.++.+.|+ ..+|..+++..+..+ |+
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd---~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGD---ELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhcc---HHHHHHHHHHHHHhhccc
Confidence 46899999999999999999988877776544 67899999999999998 999999999999654 44
No 290
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.75 E-value=2.1 Score=25.19 Aligned_cols=31 Identities=19% Similarity=-0.067 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
..|..++..+...|+++.|...|.+++...|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 5688999999999999999999999998754
No 291
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.33 E-value=20 Score=32.77 Aligned_cols=95 Identities=16% Similarity=0.119 Sum_probs=57.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHH-------HHHHH
Q psy8681 282 FAELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVW-------MNYAQ 353 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vw-------i~ya~ 353 (521)
.+.++.+.|+.+.|...|.++...+.. .....++...|..-...|++..+.....++-.......-| +.-+.
T Consensus 42 l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL 121 (177)
T PF10602_consen 42 LADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGL 121 (177)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 555666666666666666666553311 1124577777888888889888888888776553221112 22333
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 354 FEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 354 ~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+....++ +..|-..|-.++..+.
T Consensus 122 ~~l~~r~---f~~AA~~fl~~~~t~~ 144 (177)
T PF10602_consen 122 ANLAQRD---FKEAAELFLDSLSTFT 144 (177)
T ss_pred HHHHhch---HHHHHHHHHccCcCCC
Confidence 3344455 7777777776665554
No 292
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.32 E-value=25 Score=28.29 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.9
Q ss_pred hcCChHHHHHHHHHHHhcCC-----C-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 324 GQGERDKVRELHERLLERTV-----H-----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~~~-----~-----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+.|++..|.+.+.+.+.... . .-..+..+.+....|+ .+.|...++.|+......++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~---~~~A~~~l~eAi~~Are~~D 76 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGH---YEEALQALEEAIRLARENGD 76 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHHCC
Confidence 67888888777777766531 1 2345667777888888 99999999999998877665
No 293
>KOG0545|consensus
Probab=80.10 E-value=59 Score=31.39 Aligned_cols=65 Identities=14% Similarity=0.106 Sum_probs=55.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+...|.+-....|++-++.+.....|..+| +++.+..-|......-+ ..+|+.-|..++...|.-
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn---~~eA~~D~~~vL~ldpsl 297 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWN---EAEAKADLQKVLELDPSL 297 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcC---HHHHHHHHHHHHhcChhh
Confidence 566676667778999999999999999887 79999998888887777 899999999999988864
No 294
>PF12854 PPR_1: PPR repeat
Probab=79.83 E-value=3.2 Score=26.54 Aligned_cols=28 Identities=21% Similarity=0.304 Sum_probs=24.3
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
+...|...|+.+.+.|++++|..+|+++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4568999999999999999999999864
No 295
>KOG0985|consensus
Probab=79.79 E-value=1.3e+02 Score=35.07 Aligned_cols=59 Identities=7% Similarity=0.125 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI 277 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~ 277 (521)
.+|..++...-+.|-...|.+. |-++ .++..+...++...+.|.+++....+.-|-+..
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieS--------yika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIES--------YIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHH--------HHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 6888888877777776666555 4332 456666677777777777777776666665543
No 296
>KOG3807|consensus
Probab=78.94 E-value=71 Score=32.15 Aligned_cols=147 Identities=10% Similarity=-0.013 Sum_probs=84.3
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------------------------HH
Q psy8681 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------------------------FA 283 (521)
Q Consensus 234 ~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------------------------~a 283 (521)
..-..+|..||....++..++.-. .--+.+|..+|.+|++...... ++
T Consensus 205 ~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnvl~YIKRRLA 282 (556)
T KOG3807|consen 205 KAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNVLVYIKRRLA 282 (556)
T ss_pred HHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccchhhHHHHHHH
Confidence 446678899999998887776544 3347889999999887422110 34
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-C-CHHHHHHHHHHHH-----
Q psy8681 284 ELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-V-HVKVWMNYAQFEM----- 356 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~-~~~vwi~ya~~e~----- 356 (521)
..-.++|...+|.+.|....+..|.-.-..+....+....+..-|..+..++-+.=.+. | +..+...-+.+-.
T Consensus 283 MCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~ 362 (556)
T KOG3807|consen 283 MCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSE 362 (556)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHh
Confidence 55678999999999999888755432122334444444444444444444444433322 2 2222222111111
Q ss_pred --------HcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 357 --------SSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 357 --------~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+.|-...-..|.....||++..|--+
T Consensus 363 kFspd~asrRGLS~AE~~AvEAihRAvEFNPHVP 396 (556)
T KOG3807|consen 363 KFSPETASRRGLSTAEINAVEAIHRAVEFNPHVP 396 (556)
T ss_pred hcCchhhhhccccHHHHHHHHHHHHHhhcCCCCc
Confidence 11211223457778888988877543
No 297
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.82 E-value=37 Score=33.49 Aligned_cols=60 Identities=20% Similarity=0.259 Sum_probs=43.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...++..+...|.++.+...+++++...| +-+.|..+...+...|. ...|+..|++.-..
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~---~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGR---QSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCC---chHHHHHHHHHHHH
Confidence 34455556677788888888888888777 46678777777777777 77777777776653
No 298
>KOG1308|consensus
Probab=78.47 E-value=1.7 Score=43.39 Aligned_cols=88 Identities=13% Similarity=-0.011 Sum_probs=61.4
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
++.|+++.|...|-.++...|... .+|..-.....+.+....++ ..|..++.++|....-+-.-+.....
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a--~l~~kr~sv~lkl~kp~~ai--------rD~d~A~ein~Dsa~~ykfrg~A~rl 194 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLA--ILYAKRASVFLKLKKPNAAI--------RDCDFAIEINPDSAKGYKFRGYAERL 194 (377)
T ss_pred hcCcchhhhhcccccccccCCchh--hhcccccceeeeccCCchhh--------hhhhhhhccCcccccccchhhHHHHH
Confidence 444689999999999999999876 44444333333333333343 33899999999877665555555566
Q ss_pred cCCHHHHHHHHHHHHHcC
Q psy8681 260 EGNADLIRETYERAIANI 277 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~ 277 (521)
.|++++|...|..|+++.
T Consensus 195 lg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLD 212 (377)
T ss_pred hhchHHHHHHHHHHHhcc
Confidence 788888888888887764
No 299
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=77.48 E-value=5.8 Score=26.80 Aligned_cols=32 Identities=13% Similarity=0.293 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
.|..+|-.+|.+-..|+.|+.++...|++.++
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~ra 35 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARA 35 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHH
Confidence 38889999999999999999999999988654
No 300
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=76.96 E-value=95 Score=32.03 Aligned_cols=132 Identities=17% Similarity=0.067 Sum_probs=74.1
Q ss_pred HHHHHHH---cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh---------cCChHHHHHHHHHHHhcCCCHHHHH
Q psy8681 282 FAELESL---LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG---------QGERDKVRELHERLLERTVHVKVWM 349 (521)
Q Consensus 282 ~a~le~~---~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~---------~g~~~~Ar~l~eral~~~~~~~vwi 349 (521)
||-...+ .|+.++|+.++..++...... .+..+...+.++.. ....++|...|.++....++.-.=|
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~~~~~~-~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI 263 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLESDENP-DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI 263 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH
Confidence 4444444 688888888888866533221 23445444444322 2348999999999999987655557
Q ss_pred HHHHHHHHcCCc-hhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH--HHcCCHHHHHHHHhhC
Q psy8681 350 NYAQFEMSSGDE-DSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE--AQHGDDESRAKLNSKL 414 (521)
Q Consensus 350 ~ya~~e~~~g~~-~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE--~~~G~~~~~~~v~~~~ 414 (521)
+++.++...|.. ..-.+.+++--+.-......+..+.....|..=--|| --.||.+.+.+..++|
T Consensus 264 N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~ 331 (374)
T PF13281_consen 264 NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKA 331 (374)
T ss_pred HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777776651 1233444444222222222221111223333222222 2579998888888777
No 301
>KOG1941|consensus
Probab=76.16 E-value=97 Score=31.71 Aligned_cols=133 Identities=15% Similarity=0.080 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcC------CCCCC
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQ------PRLDM 310 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~------~~~~~ 310 (521)
.....++..+...+.+.++.+.|+.|+...-... ++.|...+.++++|.-...+|... .+++.
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 4556677777778889999999999988543322 677888889999998877777652 11110
Q ss_pred --cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 311 --PELVWKAYIDFEVGQGERDKVRELHERLLERT---V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 311 --~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.......+.-.++..|.+..|.+..+.+.++. . +..-...++..+...|+ .+.|-.-|+.|...+..-
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd---~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGD---LERAFRRYEQAMGTMASL 279 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhccc---HhHHHHHHHHHHHHHhhh
Confidence 01122223334677899999999999887763 2 34455678889988888 899999999998877654
Q ss_pred hh
Q psy8681 382 SE 383 (521)
Q Consensus 382 ~~ 383 (521)
++
T Consensus 280 gd 281 (518)
T KOG1941|consen 280 GD 281 (518)
T ss_pred hh
Confidence 43
No 302
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=75.42 E-value=71 Score=29.83 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=56.3
Q ss_pred HcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCch
Q psy8681 288 LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-----VHVKVWMNYAQFEMSSGDED 362 (521)
Q Consensus 288 ~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-----~~~~vwi~ya~~e~~~g~~~ 362 (521)
..-+-+.|+..|-.+-..+..+ .+.+-.+++.|+. .-+..+++.+|-++|... .++++..+++....+.++
T Consensus 118 sr~~d~~A~~~fL~~E~~~~l~-t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~-- 193 (203)
T PF11207_consen 118 SRFGDQEALRRFLQLEGTPELE-TAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN-- 193 (203)
T ss_pred hccCcHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc--
Confidence 3334466777777776666554 4677777777775 578899999999999975 268899999999988887
Q ss_pred hhHHH
Q psy8681 363 SVSLA 367 (521)
Q Consensus 363 ~~~~A 367 (521)
++.|
T Consensus 194 -~e~A 197 (203)
T PF11207_consen 194 -YEQA 197 (203)
T ss_pred -hhhh
Confidence 5554
No 303
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=74.80 E-value=90 Score=30.68 Aligned_cols=136 Identities=15% Similarity=0.137 Sum_probs=87.2
Q ss_pred HHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh-hHHHHHHHHHHHHhcC
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE-EHERARVIYKYALDHI 199 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~-~~e~Ar~iy~~aL~~~ 199 (521)
.+.|+++.|..+|.++-.... ..++.....++...-..| ...+..+ .++.|...+++|++.+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~--~~~~~~~~~La~~~yn~G---------------~~l~~~~~~~~~a~~wL~~a~~~l 66 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN--SLDPDMAEELARVCYNIG---------------KSLLSKKDKYEEAVKWLQRAYDIL 66 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh--cCCcHHHHHHHHHHHHHH---------------HHHHHcCCChHHHHHHHHHHHHHH
Confidence 467899999999999987642 223444444444443333 1222223 6677777777776663
Q ss_pred Ch------------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 200 PK------------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 200 P~------------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
.. .....+...++......++.+..... ....+.+-...|+.+.+.+..+.++...++.+.+.
T Consensus 67 ~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka-----~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 67 EKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKA-----LNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred HhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHH
Confidence 11 11224555556666566665554432 22244444567898999988889888889999999
Q ss_pred HHHHHHHHcCC
Q psy8681 268 ETYERAIANIP 278 (521)
Q Consensus 268 ~~~erAl~~~P 278 (521)
+++.+++...+
T Consensus 142 ~~L~~mi~~~~ 152 (278)
T PF08631_consen 142 EILMRMIRSVD 152 (278)
T ss_pred HHHHHHHHhcc
Confidence 99999999876
No 304
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=74.53 E-value=4.1 Score=38.56 Aligned_cols=36 Identities=17% Similarity=0.242 Sum_probs=17.3
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
.++.+.+.++|.+|+...| .+..-|..++.+.+..|
T Consensus 8 ~~D~~aaaely~qal~lap---~w~~gwfR~g~~~ekag 43 (287)
T COG4976 8 SGDAEAAAELYNQALELAP---EWAAGWFRLGEYTEKAG 43 (287)
T ss_pred cCChHHHHHHHHHHhhcCc---hhhhhhhhcchhhhhcc
Confidence 3444555555555555433 23444555555554444
No 305
>KOG2796|consensus
Probab=73.90 E-value=93 Score=30.44 Aligned_cols=107 Identities=7% Similarity=-0.003 Sum_probs=66.4
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc---hh--------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 236 YEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP---TK--------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 236 ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~---~~--------~a~le~~~g~~e~Ar~ife~al 303 (521)
|.+.++.+ |.++.+-..+++..++.|++..|...|++.-+.... -. .+-++...+++..|...|.+++
T Consensus 200 ~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 200 YHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred HHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhcc
Confidence 66667766 567777788888888888888888777754332110 00 2334445667777777887777
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 304 SQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
..++.+... -+.-+-...-.|+...|.+..+.++...|.
T Consensus 280 ~~D~~~~~a--~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 280 RMDPRNAVA--NNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred ccCCCchhh--hchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 755443211 111111222358888888888888887653
No 306
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=73.73 E-value=5.1 Score=24.21 Aligned_cols=28 Identities=18% Similarity=0.296 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
.|...++.+.+.|++++|..+|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4778888888899999999999887653
No 307
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.65 E-value=15 Score=36.13 Aligned_cols=60 Identities=10% Similarity=0.133 Sum_probs=46.5
Q ss_pred HHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 208 YKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 208 ~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+.+++......|..+.+... +++.+..+|.+..+|..++..+...|+...|+..|.+.-+
T Consensus 156 l~~lae~~~~~~~~~~~~~~--------l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 156 LTKLAEALIACGRADAVIEH--------LERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHhcccHHHHHHH--------HHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 33344444455666666544 8999999999999999999999999999999999988533
No 308
>KOG0551|consensus
Probab=73.31 E-value=53 Score=33.08 Aligned_cols=58 Identities=14% Similarity=0.070 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------H---HHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTK------F---AELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------~---a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
+-.=|+.+.+..++..|+..|..+|+....+. | +.....+|++-.|..-...|+...|
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P 150 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKP 150 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34444455555555556666666655422211 1 2223334555555555555555433
No 309
>PRK10941 hypothetical protein; Provisional
Probab=72.35 E-value=26 Score=34.45 Aligned_cols=46 Identities=9% Similarity=0.008 Sum_probs=27.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
-+..+...|.++.-|.+-|-++.+.|-...|+.-|+.-+..+|...
T Consensus 204 ~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 204 SEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 5555666666666666666666666666666666666666655543
No 310
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=71.74 E-value=77 Score=29.96 Aligned_cols=94 Identities=21% Similarity=0.224 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHHhc-----CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC--C----HHHHHH
Q psy8681 184 EHERARVIYKYALDH-----IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN--N----YDAWFD 252 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~-----~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~--~----~~~W~~ 252 (521)
.++.|...|..||-. .+....+.++...+-+....|+.+ .+..++.++...|++++..... . ..+-+.
T Consensus 92 t~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~-~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 92 TLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEE-NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHH-HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 677788888777643 233333466666666666666633 2323333344445555443211 1 111122
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 253 YLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
.+.|..++|+.++|...|.+++..+.
T Consensus 171 -----------------------------igeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 171 -----------------------------IGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred -----------------------------HHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 35666677777777777777776543
No 311
>KOG0276|consensus
Probab=71.52 E-value=20 Score=38.70 Aligned_cols=85 Identities=14% Similarity=-0.008 Sum_probs=69.4
Q ss_pred CCCchhhhhhH-H-HHHH--HHHHhcCChhhhhhhcCCCcH----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHH
Q psy8681 49 AKPNLKLLEKA-K-AWKK--AMEEKQGNKIGEEGANKENEE----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVF 119 (521)
Q Consensus 49 ~~rai~~lP~~-~-~W~~--~~e~~~gn~~~Ar~ife~P~~----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~ 119 (521)
+..+...||++ + .-.+ .+.+.+|-.+.|..+-.+|+. .++.|+++.|..+ ..+- +..-|..++++
T Consensus 602 ~~~a~~vLp~I~k~~rt~va~Fle~~g~~e~AL~~s~D~d~rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 602 LEVADGVLPTIPKEIRTKVAHFLESQGMKEQALELSTDPDQRFELALKLGRLDIAFDLAVEAN------SEVKWRQLGDA 675 (794)
T ss_pred ccccccccccCchhhhhhHHhHhhhccchHhhhhcCCChhhhhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHH
Confidence 34555577777 3 3334 788899999999999888887 7788999999988 6653 56779999999
Q ss_pred HHHcCChhHHHHHHHHHHHh
Q psy8681 120 EEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 120 e~~~g~~~~Ar~vye~Al~~ 139 (521)
....|++..|.++|.+|...
T Consensus 676 al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARDL 695 (794)
T ss_pred HhhcccchhHHHHHHhhcch
Confidence 99999999999999999875
No 312
>KOG0276|consensus
Probab=71.33 E-value=57 Score=35.46 Aligned_cols=85 Identities=22% Similarity=0.206 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFE 322 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e 322 (521)
..++..-|-.++++..+.|++.-|.+.|.+|-.... +.-+....|+-+.-..+-..+-.....+ ..+.+|.
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~---LlLl~t~~g~~~~l~~la~~~~~~g~~N---~AF~~~~--- 732 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGELPLASECFLRARDLGS---LLLLYTSSGNAEGLAVLASLAKKQGKNN---LAFLAYF--- 732 (794)
T ss_pred hhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhh---hhhhhhhcCChhHHHHHHHHHHhhcccc---hHHHHHH---
Confidence 346788899999999999999999999999755322 3344556666654444444443332221 2333332
Q ss_pred HhcCChHHHHHHHHH
Q psy8681 323 VGQGERDKVRELHER 337 (521)
Q Consensus 323 ~~~g~~~~Ar~l~er 337 (521)
..|+++.+.+++..
T Consensus 733 -l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 733 -LSGDYEECLELLIS 746 (794)
T ss_pred -HcCCHHHHHHHHHh
Confidence 46777777666543
No 313
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=70.84 E-value=10 Score=24.64 Aligned_cols=29 Identities=17% Similarity=0.007 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
.+...++.++...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999999986
No 314
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=67.85 E-value=8 Score=23.29 Aligned_cols=28 Identities=14% Similarity=-0.077 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
+|..+++.+.+.|++++|..+|.+..+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 5889999999999999999999998753
No 315
>PRK10941 hypothetical protein; Provisional
Probab=66.75 E-value=21 Score=35.05 Aligned_cols=58 Identities=16% Similarity=-0.077 Sum_probs=53.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL 145 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~ 145 (521)
+++.++++.|... ++.+ ...| ++.-|..-|-++.+.|.+..|+.-++.-++..|+++.
T Consensus 191 ~~~~~~~~~AL~~~e~ll--~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 191 LMEEKQMELALRASEALL--QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHcCcHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 7788999999999 9999 9999 7888999999999999999999999999999886543
No 316
>KOG0551|consensus
Probab=66.66 E-value=34 Score=34.41 Aligned_cols=89 Identities=13% Similarity=0.102 Sum_probs=65.5
Q ss_pred hhhhhHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPK--DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~--~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
+..+.|..|+..|..+|..... +....+|..-+....-.|++-++..- ..+++..+|.+..+++.=+..+
T Consensus 92 fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~D--------cs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 92 FKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALND--------CSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHH--------HHHHHhcCcchhhhhhhhhHHH
Confidence 3334899999999999987322 22346777766666667777666644 7888899999999999888888
Q ss_pred HHcCCHHHHHHHHHHHHHc
Q psy8681 258 EDEGNADLIRETYERAIAN 276 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~ 276 (521)
.....++.|....+..+..
T Consensus 164 ~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 8887777777766665443
No 317
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=66.54 E-value=10 Score=38.27 Aligned_cols=46 Identities=15% Similarity=0.098 Sum_probs=41.0
Q ss_pred hhhHHH-HhhhccCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhc
Q psy8681 93 DREEED-ERKDEGDRDSD----TTYGMRELVFEEQNGFVSGARKVYERAVEFF 140 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~ 140 (521)
++++.+ +.+| ...|+ +..|+.++.++...|.++.++.+|+.|+...
T Consensus 120 eei~~~L~~li--~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag 170 (353)
T PF15297_consen 120 EEILATLSDLI--KNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG 170 (353)
T ss_pred HHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Confidence 567778 8888 88885 6899999999999999999999999999873
No 318
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=66.18 E-value=14 Score=23.89 Aligned_cols=29 Identities=17% Similarity=0.132 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
.+...++..+...|++++|..++++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 35667777888888888888888887763
No 319
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=64.11 E-value=13 Score=22.84 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
.|...+..+.+.|++++|..+|.++...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4777888888899999999999888764
No 320
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.99 E-value=20 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=20.2
Q ss_pred hhhhhhHHHHHHHHHHHHhcCChhhH
Q psy8681 179 KFQYEEHERARVIYKYALDHIPKDRT 204 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~P~~~~ 204 (521)
.+..|+++.|+...+.+|+..|.+..
T Consensus 11 ~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 11 HYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 34445999999999999999999863
No 321
>KOG1538|consensus
Probab=63.03 E-value=2.5e+02 Score=31.14 Aligned_cols=30 Identities=20% Similarity=0.003 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
..-|-.++.--...-.++-||+.|-+.-..
T Consensus 585 ~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl 614 (1081)
T KOG1538|consen 585 DTDWRELAMEALEALDFETARKAYIRVRDL 614 (1081)
T ss_pred cchHHHHHHHHHhhhhhHHHHHHHHHHhcc
Confidence 345888887777667899999999887554
No 322
>KOG4507|consensus
Probab=61.94 E-value=42 Score=36.26 Aligned_cols=23 Identities=17% Similarity=0.091 Sum_probs=19.4
Q ss_pred hhhhHHHHHHHHHHHHhcCChhh
Q psy8681 181 QYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
...+++.|.+.|+.|++..|.+.
T Consensus 688 ~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 688 ALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHhhhHHHHHHHHHHHhcCCCCh
Confidence 33589999999999999988765
No 323
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.82 E-value=24 Score=32.53 Aligned_cols=50 Identities=32% Similarity=0.317 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 328 RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 328 ~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.....+..++.+...|++.++..++..+...|+ .++|+.+..++...+|.
T Consensus 127 l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~---~~eA~~~~~~~~~lyP~ 176 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRPDPNVYQRYALALALLGD---PEEARQWLARARRLYPA 176 (193)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCc
Confidence 455566778888888999999999999999998 99999999999999994
No 324
>KOG1166|consensus
Probab=60.22 E-value=1.3e+02 Score=35.25 Aligned_cols=113 Identities=16% Similarity=0.278 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHHc----CC-HHHHHHHHHHHHHcCCchh-------HHHHH---HHcCCHHHHHHHHHHHHcCCCCCC
Q psy8681 246 NYDAWFDYLRLLEDE----GN-ADLIRETYERAIANIPPTK-------FAELE---SLLGDMERARAIYELAISQPRLDM 310 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~----g~-~~~Ar~~~erAl~~~P~~~-------~a~le---~~~g~~e~Ar~ife~al~~~~~~~ 310 (521)
-.+.|..|+...... +. ..-.+.++++++...++.. |..++ .....+..++.+|..+-...-...
T Consensus 33 Pl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~~e~~~d~~d~f~~m~~kgIg~~ 112 (974)
T KOG1166|consen 33 PLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLELREELQDAEDFFSYLENKGIGTT 112 (974)
T ss_pred chhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHHHHHHhhHHHHHHHHHhccccch
Confidence 357888888887643 23 5667788888887665543 33332 245677888888888777543333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHc
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKVWMNYAQFEMSS 358 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~vwi~ya~~e~~~ 358 (521)
...++..|..++.+.+.+..|..+|+.+++.. |-..+-..|..|....
T Consensus 113 lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~~~F~~r~ 162 (974)
T KOG1166|consen 113 LALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQYSNFQQRL 162 (974)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence 56778888888888888999999999998764 5555656666666554
No 325
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=60.20 E-value=18 Score=22.13 Aligned_cols=28 Identities=14% Similarity=-0.038 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
+|..++..+.+.|++++|..+|..+...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5888999999999999999999998764
No 326
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=59.11 E-value=2.2e+02 Score=29.27 Aligned_cols=138 Identities=16% Similarity=0.145 Sum_probs=85.8
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----Cchh--------HHHHHHHcCCH--HHHHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANI-----PPTK--------FAELESLLGDM--ERARAIYE 300 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~-----P~~~--------~a~le~~~g~~--e~Ar~ife 300 (521)
+..++..+|+..++|..+..++.+..-.+.-+...+.++... |... .+......+.. ..-|.+|.
T Consensus 112 l~~arq~FpD~SDl~~aLreLl~r~kL~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~lYR 191 (372)
T PRK15338 112 LRQARKLFPDPSDLVLVLRELLRRKQLEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRASYR 191 (372)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCccCCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 888889999999999999988875543444555555555432 2111 44555555555 77789999
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 301 LAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-----VHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 301 ~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-----~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
..+.... +...+|..|+.-+ ...+.+.+.....++|... |+..+ ..++.+....+.-..+..|-.+|-.-+
T Consensus 192 ~Fl~~d~--~~~~iY~~Wieey-g~~~R~~il~Fl~~AL~~DlqS~~Ps~~~-~EFG~l~~~l~~LR~L~Sad~~F~~~~ 267 (372)
T PRK15338 192 QFLQSES--HEVEIYSDWIASY-GYQRRLVVLDFIEGSLLTDIDANDASCSR-LEFGQLLRRLTQLKMLRSADLLFVKTL 267 (372)
T ss_pred HHHhccC--cHHHHHHHHHHHh-CccHHHHHHHHHHHHHHhHHhcCCCCCCH-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9888543 1356788887644 4566788888888888763 44332 445555555443222444555555544
Q ss_pred HH
Q psy8681 376 QA 377 (521)
Q Consensus 376 ~~ 377 (521)
..
T Consensus 268 ~~ 269 (372)
T PRK15338 268 LS 269 (372)
T ss_pred Hh
Confidence 43
No 327
>TIGR01987 HI0074 nucleotidyltransferase substrate binding protein, HI0074 family. The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins. It forms a complex with HI0073, encoded by the adjacent gene and containing a nucleotidyltransferase nucleotide binding domain (pfam01909).
Probab=58.51 E-value=90 Score=26.70 Aligned_cols=68 Identities=12% Similarity=0.235 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhcCC----hHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 312 ELVWKAYIDFEVGQGE----RDKVRELHERLLERT--VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~----~~~Ar~l~eral~~~--~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+..|+..=.++...|- ...-+.+++.|.+.. .++.+|+.+...-....+.=+-+.|..++.+...++|
T Consensus 39 ELaWK~lK~~L~~~G~~~~~~~spr~~ir~A~~~glI~d~~~W~~ml~~RN~tsHtYde~~a~~i~~~I~~y~~ 112 (123)
T TIGR01987 39 ELAWKLMKRYLAQEGINDIGAYSPKDVLKEAFRAGLIGDESLWIAMLDDRNITSHTYDQEKAREIYAQIRDYVP 112 (123)
T ss_pred HHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHcCCcCCHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHH
Confidence 4678887777766664 334588888887765 5899999988754332221125678999998876655
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=58.19 E-value=15 Score=21.77 Aligned_cols=23 Identities=22% Similarity=0.255 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYE 271 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~e 271 (521)
+.+.++..+...|++++|+.+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44567777788888888887765
No 329
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=57.62 E-value=92 Score=31.59 Aligned_cols=60 Identities=15% Similarity=0.231 Sum_probs=44.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
++++.....-.+++..++..++..-| .++.|+-.|.++...|. ++....+|+.|+.....
T Consensus 109 Cl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~---~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 109 CLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGP---IEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHcCCC
Confidence 33333333445677777787777665 47889999999999888 88999999999987554
No 330
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=57.26 E-value=49 Score=31.26 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCC---CC-cHHHHHHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRL---DM-PELVWKAYIDFE 322 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~---~~-~~~lw~~yi~~e 322 (521)
..+++.++-++...|+.+.....+++| ...|+.+...... .+ ...+....+.+.
T Consensus 118 A~l~LrlAWlyR~~~~~~~E~~fl~~A----------------------l~~y~~a~~~e~~~~~~~~~~~l~YLigeL~ 175 (214)
T PF09986_consen 118 AGLCLRLAWLYRDLGDEENEKRFLRKA----------------------LEFYEEAYENEDFPIEGMDEATLLYLIGELN 175 (214)
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHH----------------------HHHHHHHHHhCcCCCCCchHHHHHHHHHHHH
Confidence 456667777776777655555555554 4456666653211 11 123444456788
Q ss_pred HhcCChHHHHHHHHHHHhcC
Q psy8681 323 VGQGERDKVRELHERLLERT 342 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~ 342 (521)
.+.|++++|...|.+++...
T Consensus 176 rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 176 RRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHhCCHHHHHHHHHHHHcCC
Confidence 99999999999999999875
No 331
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.29 E-value=1e+02 Score=24.61 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=38.1
Q ss_pred HHcCChhHHHHHHHHHHHhcCCcccc------HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLD------EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~------~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
.+.|++..|...+.+.++........ .......+.+....| .++.|...++.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G----------------------~~~~A~~~l~e 66 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG----------------------HYEEALQALEE 66 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC----------------------CHHHHHHHHHH
Confidence 35689999988888877764322111 233444555666666 89999999999
Q ss_pred HHhc
Q psy8681 195 ALDH 198 (521)
Q Consensus 195 aL~~ 198 (521)
|+..
T Consensus 67 Ai~~ 70 (94)
T PF12862_consen 67 AIRL 70 (94)
T ss_pred HHHH
Confidence 9876
No 332
>KOG1941|consensus
Probab=56.09 E-value=2.5e+02 Score=28.92 Aligned_cols=133 Identities=12% Similarity=0.003 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---------------HHHHHHHcCCHHHHHHHHHHHHcC----CCC
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---------------FAELESLLGDMERARAIYELAISQ----PRL 308 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---------------~a~le~~~g~~e~Ar~ife~al~~----~~~ 308 (521)
.+...++.++....++++|.-...+|........ ++--...+|.+-.|....+.+.+. .+.
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdr 242 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDR 242 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCh
Confidence 4566677777777777777666666655432111 233355677777777777776552 222
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHcCC--chhhHHHHHHHHHHHHHhc
Q psy8681 309 DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-------HVKVWMNYAQFEMSSGD--EDSVSLARRVFERANQALK 379 (521)
Q Consensus 309 ~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-------~~~vwi~ya~~e~~~g~--~~~~~~AR~vferAl~~~~ 379 (521)
.....-...++++++..|+.+.|-.-|+.+..... .+.+....+.......- ...-=+|.+.-.|+++...
T Consensus 243 a~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~ 322 (518)
T KOG1941|consen 243 ALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVAS 322 (518)
T ss_pred HHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 22455667788899999999998888888876531 24444445544332211 0001235555566665544
Q ss_pred c
Q psy8681 380 A 380 (521)
Q Consensus 380 ~ 380 (521)
.
T Consensus 323 ~ 323 (518)
T KOG1941|consen 323 S 323 (518)
T ss_pred H
Confidence 3
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=55.77 E-value=47 Score=31.02 Aligned_cols=52 Identities=10% Similarity=0.140 Sum_probs=44.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHhhh
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE-NLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~-~~~~~lw~~~a~~e~~~~ 161 (521)
++.+-..+|.++.+. +.++++.+|-++|+..+.+ ..++.++.+++....+++
T Consensus 140 t~elq~aLAtyY~kr-D~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~ 192 (203)
T PF11207_consen 140 TAELQYALATYYTKR-DPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK 192 (203)
T ss_pred CHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 588899999999854 8899999999999987654 567999999999888877
No 334
>KOG2300|consensus
Probab=54.32 E-value=3e+02 Score=29.41 Aligned_cols=170 Identities=14% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCchh---------HHHHHHHcCCHHHHHHHHHHHHc----CCCC-CC
Q psy8681 247 YDAWFDYLRLLEDEG--NADLIRETYERAIANIPPTK---------FAELESLLGDMERARAIYELAIS----QPRL-DM 310 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g--~~~~Ar~~~erAl~~~P~~~---------~a~le~~~g~~e~Ar~ife~al~----~~~~-~~ 310 (521)
+...+.++..+..+| ++..++..++-.+..-|+.. =+-|..-..+++.|+..+++|.. .|.+ +.
T Consensus 7 a~aLlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydv 86 (629)
T KOG2300|consen 7 AEALLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDV 86 (629)
T ss_pred HHHHHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhh
Q ss_pred cHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh
Q psy8681 311 PELVWKAYIDFEVGQG-ERDKVRELHERLLERTVHVKVWMN-----YAQFEMSSGDEDSVSLARRVFERANQALKASSEK 384 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g-~~~~Ar~l~eral~~~~~~~vwi~-----ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~ 384 (521)
.-....-..+.+.... .+..|+.++.++++...+...|-. +++......+ +..|.+.+.-+......-...
T Consensus 87 Kf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD---~~sA~elLavga~sAd~~~~~ 163 (629)
T KOG2300|consen 87 KFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKD---FPSALELLAVGAESADHICFP 163 (629)
T ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhcc---chhHHHHHhccccccchhhhH
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhh
Q psy8681 385 EERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 385 ~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~ 419 (521)
.-|......-..+-..--+..++.++.+++-..+.
T Consensus 164 ylr~~ftls~~~ll~me~d~~dV~~ll~~~~qi~~ 198 (629)
T KOG2300|consen 164 YLRMLFTLSMLMLLIMERDDYDVEKLLQRCGQIWQ 198 (629)
T ss_pred HHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHh
No 335
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=53.92 E-value=27 Score=32.25 Aligned_cols=48 Identities=23% Similarity=0.061 Sum_probs=43.9
Q ss_pred chhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC
Q psy8681 92 RDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFG 141 (521)
Q Consensus 92 ~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~ 141 (521)
.+..+.. ++.+ ..+|++.++..++..+...|+.++|+.+..++...+|
T Consensus 127 l~~~~~~a~~~l--~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLL--RRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4556777 8899 9999999999999999999999999999999999987
No 336
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=53.84 E-value=28 Score=21.34 Aligned_cols=29 Identities=14% Similarity=-0.024 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
.+|..++..+.+.|+++.|..+|+.+.+.
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999998764
No 337
>KOG2422|consensus
Probab=53.16 E-value=3.4e+02 Score=29.65 Aligned_cols=34 Identities=12% Similarity=-0.066 Sum_probs=28.3
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHH
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVE 138 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~ 138 (521)
..+| .++..+..+.+...+|+.+-|..+.+++|=
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly 312 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLY 312 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3357 688999999999999998888888888774
No 338
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=51.62 E-value=24 Score=34.82 Aligned_cols=52 Identities=17% Similarity=0.010 Sum_probs=43.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
+..+|.+.+|..+ +|++ ..+| +...|..+...+...|+--.|.+.|++.-..
T Consensus 289 yle~g~~neAi~l~qr~l--tldpL~e~~nk~lm~~la~~gD~is~~khyerya~v 342 (361)
T COG3947 289 YLEAGKPNEAIQLHQRAL--TLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHHcCChHHHHHHHHHHh--hcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHH
Confidence 6778889999999 9999 8999 8888998988888888877777777776543
No 339
>KOG0376|consensus
Probab=49.37 E-value=30 Score=36.38 Aligned_cols=88 Identities=16% Similarity=0.040 Sum_probs=67.4
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
-+.++.|..+ .++| ..+| ++..|..-+....+.+++..|..-+.+|++.-| .....|+.-+......+
T Consensus 17 ~~~fd~avdlysKaI--~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP---~~~K~Y~rrg~a~m~l~----- 86 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAI--ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDP---TYIKAYVRRGTAVMALG----- 86 (476)
T ss_pred cchHHHHHHHHHHHH--hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCc---hhhheeeeccHHHHhHH-----
Confidence 4678889999 9999 9999 678888888888889999999999999998844 23333433344444444
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
.+.+|...|+......|...
T Consensus 87 -----------------~~~~A~~~l~~~~~l~Pnd~ 106 (476)
T KOG0376|consen 87 -----------------EFKKALLDLEKVKKLAPNDP 106 (476)
T ss_pred -----------------HHHHHHHHHHHhhhcCcCcH
Confidence 78888888988888888765
No 340
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=48.52 E-value=39 Score=20.60 Aligned_cols=28 Identities=18% Similarity=0.339 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
.|...+....+.|+++.|..+|+.+.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5777777788888888888888887653
No 341
>KOG1464|consensus
Probab=48.15 E-value=2.8e+02 Score=27.28 Aligned_cols=189 Identities=17% Similarity=0.196 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHHhcCChhhH--HHHHHHHHHHHHHcCChhhHHHHHHhhHHHH-HHHHHhhCC--CCHHHHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIPKDRT--AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQ-YEEEVNSNP--NNYDAWFDYLRLL 257 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~--~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~-ye~al~~~P--~~~~~W~~y~~~~ 257 (521)
.+.+.|..-|++.|+..|.... -......+...-+.|+....... .+.... ...|+..|- .+...-++|+.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~--Y~qlLTYIkSAVTrNySEKsIN~IlDyiS-- 116 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMER--YKQLLTYIKSAVTRNYSEKSINSILDYIS-- 116 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHh--
Confidence 3789999999999998765421 12223334444455665554332 000111 122333322 23344444444
Q ss_pred HHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCC----C------CcHHHHH
Q psy8681 258 EDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRL----D------MPELVWK 316 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~----~------~~~~lw~ 316 (521)
.+.+.+-....|+-.+....+.. ++.++...|++.+-..|+...-..+.. + .-..++.
T Consensus 117 -tS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYA 195 (440)
T KOG1464|consen 117 -TSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYA 195 (440)
T ss_pred -hhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHh
Confidence 45566666677766554332211 677777777777777777665443211 0 0124555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHH----HHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYA----QFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya----~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.=|+++..+.+-.+-..+|+++|... |||-+.-..- .+... ++.++.|-.-|-.|...+.
T Consensus 196 lEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlr---eg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 196 LEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLR---EGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccc---cchHHHHHhHHHHHHhccc
Confidence 55778888999999999999999764 6654321111 11111 2336666655555555443
No 342
>KOG1538|consensus
Probab=47.61 E-value=2.2e+02 Score=31.46 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 345 ~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
+.|++-|++|+..... +++|.+.|-+|
T Consensus 804 ~dVy~pyaqwLAE~Dr---FeEAqkAfhkA 830 (1081)
T KOG1538|consen 804 DDVYMPYAQWLAENDR---FEEAQKAFHKA 830 (1081)
T ss_pred ccccchHHHHhhhhhh---HHHHHHHHHHh
Confidence 6688899999887766 88888888776
No 343
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=47.61 E-value=40 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=15.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 251 FDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 251 ~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+.++..+...|+.+.||.+++..+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 3455566666666666666666554
No 344
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=46.42 E-value=1.5e+02 Score=23.65 Aligned_cols=39 Identities=23% Similarity=0.186 Sum_probs=21.2
Q ss_pred HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 268 ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
..++.++..+|.+. ++......|+++.|...+-.++...
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 34555666666654 4555556666666666666666643
No 345
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=44.22 E-value=4.8e+02 Score=28.85 Aligned_cols=170 Identities=14% Similarity=0.072 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHc---CCCCCCc
Q psy8681 247 YDAWFDYLRLLE-DEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAIS---QPRLDMP 311 (521)
Q Consensus 247 ~~~W~~y~~~~~-~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~---~~~~~~~ 311 (521)
..+.+.|+.++. ...+++.|+..+++++..+.... .+.+..+.+... |.....++|+ ..+....
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w 137 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAW 137 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhH
Q ss_pred HHHHHHH-HHHHHhcCChHHHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc--hh
Q psy8681 312 ELVWKAY-IDFEVGQGERDKVRELHERLLERT-----VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS--SE 383 (521)
Q Consensus 312 ~~lw~~y-i~~e~~~g~~~~Ar~l~eral~~~-----~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~--~~ 383 (521)
.....-. +.+....+++..|...++.+.... +...+...+..+...... +..+.+.....++....... ..
T Consensus 138 ~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~-~~~~d~~~~l~~~~~~~~~~q~~~ 216 (608)
T PF10345_consen 138 YYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRR-GSPDDVLELLQRAIAQARSLQLDP 216 (608)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHHHhhcccCC
Q ss_pred hHHHHHHHHHHHHHHH-----HcCCHHHHHHHHhhCchhhh
Q psy8681 384 KEERVMLLEAWKEFEA-----QHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~-----~~G~~~~~~~v~~~~p~~v~ 419 (521)
.. +..-+.+|..+-. ..|+...++...+.+-..+.
T Consensus 217 ~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~ 256 (608)
T PF10345_consen 217 SV-HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLD 256 (608)
T ss_pred CC-CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
No 346
>KOG3871|consensus
Probab=40.22 E-value=33 Score=34.55 Aligned_cols=57 Identities=26% Similarity=0.231 Sum_probs=35.3
Q ss_pred CcHHHHHHHHHHHHHhHhhccCcCCccccchhhhHHHhhhhhhhhhhhhhhhcccCCCCc
Q psy8681 450 PNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDEKKDERDRDSDD 509 (521)
Q Consensus 450 ~~~~~~~~a~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (521)
.+-|+|+.|+. ||.+-.....++...+++-.-.-+...-|-+.+.++.+|+|-|+.+
T Consensus 54 ~S~KIL~~Ak~---Qq~E~~~Ee~~~~~~~s~~~~~~~~~~~~ee~~i~~~~eddi~D~~ 110 (449)
T KOG3871|consen 54 ASRKILQLAKE---QQLELAEEENAESSRNSAFEARFTTASYGEEDEIEEEDEDDIDDFE 110 (449)
T ss_pred hhHHHHHHHHH---HHHHHhhhhcccccchhhhhhhccccccccccccccchhccccccc
Confidence 33499999986 3333322234555667776666666677777777777775544433
No 347
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=40.05 E-value=60 Score=21.46 Aligned_cols=29 Identities=21% Similarity=0.015 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
+++..+|.+-...++++.|..-|.+||.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 46778899999999999999999999986
No 348
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=38.84 E-value=2.5e+02 Score=23.93 Aligned_cols=53 Identities=23% Similarity=0.330 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--NPNNYDAWFDYLRLLED 259 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--~P~~~~~W~~y~~~~~~ 259 (521)
.+|...+-+..+.|....|..+++... ..++.++.. .+.+++.|...+.....
T Consensus 83 ~l~~~~~~l~~k~~~~~~Al~~~l~~~-~d~~~a~~~~~~~~~~~lw~~~~~~~l~ 137 (140)
T smart00299 83 KLYEEAVELYKKDGNFKDAIVTLIEHL-GNYEKAIEYFVKQNNPELWAEVLKALLD 137 (140)
T ss_pred CcHHHHHHHHHhhcCHHHHHHHHHHcc-cCHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 356666666677777776666544321 123444433 34678889888877653
No 349
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=38.09 E-value=1.4e+02 Score=24.97 Aligned_cols=85 Identities=15% Similarity=-0.006 Sum_probs=47.7
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHH---HHHHHHHHc----CCh-------hHHHHHHHHHHHhcCCccccHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGM---RELVFEEQN----GFV-------SGARKVYERAVEFFGEENLDEKLF 150 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~---~~a~~e~~~----g~~-------~~Ar~vye~Al~~~~~~~~~~~lw 150 (521)
.+.||.-.|..+ +..+ ..|+ +...|+ .-|.+.... .|. -.+...|.+++.+.| .++...
T Consensus 7 ~~rGnhiKAL~iied~i--~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp---~~A~~L 81 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLI--SRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSP---DSAHSL 81 (111)
T ss_pred HHccCHHHHHHHHHHHH--HHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccCh---hHHHHH
Confidence 356888889999 9999 8898 555552 223333222 222 246667777766643 233343
Q ss_pred HHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 151 IAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 151 ~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
+.+++-..... .|+.+..-.+++|..
T Consensus 82 ~~la~~l~s~~----------------------~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVK----------------------YYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHH----------------------HHHHHHHHHHHHhcc
Confidence 44443322222 566676666777654
No 350
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=37.76 E-value=1.3e+02 Score=30.00 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=32.5
Q ss_pred HHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 214 HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 214 ~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
.....|.+..|..+ -++++..+|-+...|..+.+.+...|+--.+.+-|++
T Consensus 288 ~yle~g~~neAi~l--------~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 288 AYLEAGKPNEAIQL--------HQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHcCChHHHHHH--------HHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHH
Confidence 34455666666554 6666667777777777777777666666666666666
No 351
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=37.12 E-value=1.1e+02 Score=19.86 Aligned_cols=31 Identities=10% Similarity=-0.010 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH--HHHHcCC
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYE--RAIANIP 278 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~e--rAl~~~P 278 (521)
+.|..++-.+...|+.++|+.+|+ -+....|
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~ 34 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDK 34 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence 567777888888888888888844 5544443
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=36.22 E-value=1.3e+02 Score=20.62 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=8.6
Q ss_pred hcCChHHHHHHHHHHH
Q psy8681 324 GQGERDKVRELHERLL 339 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral 339 (521)
..|+.+.||.+++..+
T Consensus 11 e~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 11 EMGDLEGARELLEEVI 26 (44)
T ss_pred HcCChHHHHHHHHHHH
Confidence 4555555555555554
No 353
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=36.18 E-value=53 Score=25.42 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=12.4
Q ss_pred hcCChHHHHHHHHHHHhc
Q psy8681 324 GQGERDKVRELHERLLER 341 (521)
Q Consensus 324 ~~g~~~~Ar~l~eral~~ 341 (521)
..|++++|..+|..+|+.
T Consensus 18 ~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 18 EKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HhhhHHHHHHHHHHHHHH
Confidence 346777777777777765
No 354
>KOG1972|consensus
Probab=35.54 E-value=2.4e+02 Score=31.94 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+|.+...|-.|+..+...++.+....++.+|+..+|-..
T Consensus 832 l~~~~~~WR~yl~~lskl~~~~~~~~~~tkA~~sCpW~K 870 (913)
T KOG1972|consen 832 LPDENSKWRDYLEALSKLLNKERSKAASTKALDSCPWAK 870 (913)
T ss_pred CCcchhHHHHHHHHHHHhhhhhhhHHHHHHHhhcCchHH
Confidence 455666666666666666666666666666666666544
No 355
>PF08780 NTase_sub_bind: Nucleotidyltransferase substrate binding protein like; InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=35.35 E-value=2.8e+02 Score=23.59 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHc--CCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC--hHHHHHHHHHH
Q psy8681 263 ADLIRETYERAIAN--IPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE--RDKVRELHERL 338 (521)
Q Consensus 263 ~~~Ar~~~erAl~~--~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~--~~~Ar~l~era 338 (521)
+..|...++.|+.. .|.+. ++ .+.+..-|+.+. +..|+..-.++...|- ...-+.++..|
T Consensus 6 ~~kAl~~L~ea~~~~~~~~~~---~~-----~dg~IqrFE~t~--------ElaWK~lK~~L~~~G~~~~~spr~~~r~A 69 (124)
T PF08780_consen 6 FKKALSRLEEALEKYEDPLSE---LE-----RDGVIQRFEFTF--------ELAWKTLKDYLEYEGISECNSPRDVFREA 69 (124)
T ss_dssp HHHHHHHHHHHHHHH-SCHHH---HH-----HHHHHHHHHHHH--------HHHHHHHHHHHHHCTSSCCTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcchH---HH-----HHHHHHHHHHHH--------HHHHHHHHHHHHHhCCcccCCHHHHHHHH
Confidence 44566666666664 33221 11 133344455443 4578888777766654 44558888888
Q ss_pred HhcC--CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH-HHhc
Q psy8681 339 LERT--VHVKVWMNYAQFEMSSGDEDSVSLARRVFERAN-QALK 379 (521)
Q Consensus 339 l~~~--~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl-~~~~ 379 (521)
.+.. .++.+|+.+...=......=+-+.|..+|.+.. .++|
T Consensus 70 ~~~glI~d~e~Wl~m~~~RN~tsHtYde~~a~~i~~~I~~~y~~ 113 (124)
T PF08780_consen 70 FKAGLIDDGEIWLDMLEDRNLTSHTYDEETAEEIYERIPDDYLP 113 (124)
T ss_dssp HHTTSSSHHHHHHHHHHHHHHGGGTTSHHHHHHHHHTHH-HHHH
T ss_pred HHcCCCCCHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHH
Confidence 8875 678999998876544322223678889998887 5544
No 356
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=34.92 E-value=2.1e+02 Score=29.25 Aligned_cols=46 Identities=17% Similarity=0.088 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.+-+|..+++.++...|.+....+| .+.++...|-.+.|..+|..+
T Consensus 198 ~l~~Ai~lLE~~l~~s~~n~~~~Ll--LvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 198 YLLQAIALLEHALKKSPHNYQLKLL--LVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHH--HHHHHHHcCCHHHHHHHHHhc
Confidence 4456666777777766655444555 455666677777777777654
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=34.09 E-value=1.4e+02 Score=28.50 Aligned_cols=72 Identities=10% Similarity=-0.032 Sum_probs=58.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
.++.+.+.+|+.. +.-| ...| +...-..|.++++-.|++++|..-++-+-.+.|+......+|..++..+..
T Consensus 11 LL~~~sL~dai~~a~~qV--kakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea~ 84 (273)
T COG4455 11 LLDDNSLQDAIGLARDQV--KAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEAA 84 (273)
T ss_pred HHHhccHHHHHHHHHHHH--hcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence 4566788999999 8889 9999 788899999999999999999999999988877544446777777666643
No 358
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=34.01 E-value=3.5e+02 Score=24.30 Aligned_cols=102 Identities=20% Similarity=0.208 Sum_probs=71.5
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHH
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERAR 296 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar 296 (521)
..++...++.+ +.-.--.-|..+.+=+--+.++...|++.+|+.+|+......|...|+ .
T Consensus 22 ~~~~~~D~e~l--------L~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~------------k 81 (160)
T PF09613_consen 22 RLGDPDDAEAL--------LDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYA------------K 81 (160)
T ss_pred ccCChHHHHHH--------HHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHH------------H
Confidence 34556666655 555556689998888888888999999999999999977666644332 2
Q ss_pred HHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 297 AIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 297 ~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.++-.++..-. ...|..|.+--...+.-..++.+...++...
T Consensus 82 ALlA~CL~~~~----D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~~ 123 (160)
T PF09613_consen 82 ALLALCLYALG----DPSWRRYADEVLESGADPDARALVRALLARA 123 (160)
T ss_pred HHHHHHHHHcC----ChHHHHHHHHHHhcCCChHHHHHHHHHHHhc
Confidence 33334443211 1379999876667777788888888887764
No 359
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=33.06 E-value=2e+02 Score=28.18 Aligned_cols=48 Identities=17% Similarity=0.114 Sum_probs=35.5
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA 283 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a 283 (521)
-++.+..+|.++.-|..-|-.+.+.|-...|+.-++..+.++|+..++
T Consensus 204 ~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 204 AERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 566677777777777777777777777777777777777777776533
No 360
>KOG2471|consensus
Probab=31.93 E-value=6.8e+02 Score=26.96 Aligned_cols=97 Identities=13% Similarity=0.017 Sum_probs=69.6
Q ss_pred HHHHH-HHHHhcCChhhhhhhcC------CCc------H------------HHhcccchhhHHH-Hhhhc--------c-
Q psy8681 60 KAWKK-AMEEKQGNKIGEEGANK------ENE------E------------EERDKERDREEED-ERKDE--------G- 104 (521)
Q Consensus 60 ~~W~~-~~e~~~gn~~~Ar~ife------~P~------~------------e~r~g~~e~Ar~~-eral~--------~- 104 (521)
.+..| ++|-..||+..|.+++- .|. - ..+.|-|.-+..+ .++++ |
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 56667 88889999999988886 232 1 3445555555555 55552 1
Q ss_pred --------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 105 --------DRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 105 --------~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
....+..+....+-.+.-.|..-.|-++|..++..+- .++.+|+.++..+..
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh---~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH---RNPRLWLRLAECCIM 381 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh---cCcHHHHHHHHHHHH
Confidence 1112356777788888889999999999999999864 468999999986653
No 361
>KOG0889|consensus
Probab=31.63 E-value=1.5e+03 Score=30.85 Aligned_cols=317 Identities=13% Similarity=0.129 Sum_probs=0.0
Q ss_pred CCchhhhhhH-HHHHH----------HHHHhcCChhhhhhhcC----------CCcH-----------------------
Q psy8681 50 KPNLKLLEKA-KAWKK----------AMEEKQGNKIGEEGANK----------ENEE----------------------- 85 (521)
Q Consensus 50 ~rai~~lP~~-~~W~~----------~~e~~~gn~~~Ar~ife----------~P~~----------------------- 85 (521)
++.++..-.. .+|.+ ..+++.|+.+.|..+|+ -|-+
T Consensus 2464 Y~~L~E~Dm~~Glwrrr~~~~eT~~a~s~eQ~G~~e~AQ~lyekaq~Ka~~~~~~~~~~Ey~lWed~WI~Ca~eL~QWdv 2543 (3550)
T KOG0889|consen 2464 YRSLNEEDMFYGLWRRRAKFPETMVALSYEQLGFWEEAQSLYEKAQVKAREGAIPYSESEYKLWEDHWIRCASELQQWDV 2543 (3550)
T ss_pred HHhhhHHHHHHHHHHHhhccHHHHHHHHHHHhhhHHHHhhHHHHHHHHHhcccCCCCcHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred -----------------HHhcccchhhHHH-HhhhccCCCCC--------hhhHHHHHHHHHHcCChhHHHHHHHHHHHh
Q psy8681 86 -----------------EERDKERDREEED-ERKDEGDRDSD--------TTYGMRELVFEEQNGFVSGARKVYERAVEF 139 (521)
Q Consensus 86 -----------------e~r~g~~e~Ar~~-eral~~~~~P~--------~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~ 139 (521)
.-+..++..-+.. +... ...|. .+.+....+...+ ...+++.+.+.++..
T Consensus 2544 l~e~~k~~~~~~llle~aWrlsdw~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~i~e~~~l 2619 (3550)
T KOG0889|consen 2544 LTEFGKHEGNYELLLECAWRLSDWNDQKDALEQKA--KSLSDVPGFRKELYDAFLALQKKNSN--GVGEFERLIGEAIQL 2619 (3550)
T ss_pred HHHHHhccCCceeeeehhccCCcchhHHHHHHHhh--hccCCCCcHHHHHHHHHHHHHHHHhh--hhhHHHHHHHHHHHH
Q ss_pred -------cCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q psy8681 140 -------FGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYT 212 (521)
Q Consensus 140 -------~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~ 212 (521)
+|. ........+.......- ++.+|-.||....+.. ..
T Consensus 2620 ~i~~w~~lP~--~v~~~h~~lL~~~Qqiv----------------------El~Ea~~I~s~l~~~n-----------~~ 2664 (3550)
T KOG0889|consen 2620 AIREWRQLPE--RVNHGHVPLLQAFQQIV----------------------ELQEAAQIYSDLNDGN-----------VQ 2664 (3550)
T ss_pred HHHHHHhCcc--ccchhhHHHHHHHHHHH----------------------HHHHHHHHHHhccccc-----------cc
Q ss_pred HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCCchh--------
Q psy8681 213 IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI---ANIPPTK-------- 281 (521)
Q Consensus 213 ~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl---~~~P~~~-------- 281 (521)
..-.+.++...+... ++.-+-..-++...|.++..+-... +.-...+|.--. .+.+.+.
T Consensus 2665 n~~~~~~d~Ksil~~--------Wr~RlP~~~Dd~~~Wsdl~~WRq~~--y~~I~~~~~~~~~~~~~~~ns~~~~~Gyhe 2734 (3550)
T KOG0889|consen 2665 NLDNKAQDIKSILQT--------WRDRLPNVWDDMNQWSDLITWRQHA--YSMINKAYLPLVPYKQNASNSNNLYRGYHE 2734 (3550)
T ss_pred ccchhHHHHHHHHHH--------HhhcCCCcchhHHHHHHHHHHHHHH--HHHHHHHhcccchhhhccCCcchHHHhHHH
Q ss_pred -------HHHHHHHcCCHHHHHHHHHHHHcCCCCC----------------------------------------CcHHH
Q psy8681 282 -------FAELESLLGDMERARAIYELAISQPRLD----------------------------------------MPELV 314 (521)
Q Consensus 282 -------~a~le~~~g~~e~Ar~ife~al~~~~~~----------------------------------------~~~~l 314 (521)
+|..-...|-++-+.....+.-..|... ..+.+
T Consensus 2735 ~A~~in~fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aef 2814 (3550)
T KOG0889|consen 2735 LAWAINRFAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEF 2814 (3550)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHH
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHc--CCchhhHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSS--GDEDSVSLARRVFERANQALKASSEKEERVMLL 391 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi~ya~~e~~~--g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~ 391 (521)
...-+.|..+.|..+.|-..|..|++++ ..++.|..|+.+.... ++.+++.-|....-.-++..+.......|..|.
T Consensus 2815 f~lkG~f~~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~ia 2894 (3550)
T KOG0889|consen 2815 FTLKGMFLEKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNRFNKEPVNISFACNAVSCYLQAARLYNSSKARKLIA 2894 (3550)
T ss_pred HHhhhHHHHHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhccccchhhHHHHH
Q ss_pred HHH--HHHHHHcCCH-HHHHHHHhhCc
Q psy8681 392 EAW--KEFEAQHGDD-ESRAKLNSKLP 415 (521)
Q Consensus 392 ~~~--~~fE~~~G~~-~~~~~v~~~~p 415 (521)
... .++-...|+. +.+.+...-+|
T Consensus 2895 kvLwLls~dda~~~l~~~~~k~l~~ip 2921 (3550)
T KOG0889|consen 2895 KVLWLLSFDDSLGTLGDVFDKFLGEIP 2921 (3550)
T ss_pred HHHHHHHhccccchHHHHHHHhhccCC
No 362
>KOG1310|consensus
Probab=31.34 E-value=2.1e+02 Score=30.85 Aligned_cols=90 Identities=14% Similarity=-0.005 Sum_probs=64.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
....+...|.+++...|... .++..++....+.+=...+.. +......++..+|....+|+.+.+.+...+.+
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~--~~l~nraa~lmkRkW~~d~~~-----AlrDch~Alrln~s~~kah~~la~aL~el~r~ 461 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAI--YLLENRAAALMKRKWRGDSYL-----ALRDCHVALRLNPSIQKAHFRLARALNELTRY 461 (758)
T ss_pred HHHHHHHHHHHHhhhccchh--HHHHhHHHHHHhhhccccHHH-----HHHhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence 56678888999998888766 666666655443321111110 11336778889999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCch
Q psy8681 264 DLIRETYERAIANIPPT 280 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~ 280 (521)
.+|.....-+...+|.+
T Consensus 462 ~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 462 LEALSCHWALQMSFPTD 478 (758)
T ss_pred HHhhhhHHHHhhcCchh
Confidence 99998877766667743
No 363
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=31.15 E-value=2.2e+02 Score=24.32 Aligned_cols=55 Identities=7% Similarity=-0.056 Sum_probs=46.7
Q ss_pred CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 105 DRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 105 ~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
..+|+..+....+..+...|++..|.++.+.-....| -+....+|..+.++....
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~-I~i~~~~W~~Ll~W~~v~ 101 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP-IPIPKEFWRRLLEWAYVL 101 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999999999987 445689999988876543
No 364
>KOG2114|consensus
Probab=30.31 E-value=4.3e+02 Score=30.18 Aligned_cols=90 Identities=16% Similarity=0.185 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLL 391 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~ 391 (521)
..+...|++++...|+++.|..-|-+++..-....|-..|... +.+.+--..++...+.--.+ ..+...|+
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLda-------q~IknLt~YLe~L~~~gla~--~dhttlLL 438 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDA-------QRIKNLTSYLEALHKKGLAN--SDHTTLLL 438 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCH-------HHHHHHHHHHHHHHHccccc--chhHHHHH
Confidence 5678888888888888888888888887653223333222110 11222333333333221111 23556677
Q ss_pred HHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 392 EAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 392 ~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|. +.+|.+.+....++.
T Consensus 439 ncYi----Klkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 439 NCYI----KLKDVEKLTEFISKC 457 (933)
T ss_pred HHHH----HhcchHHHHHHHhcC
Confidence 7777 567777666666554
No 365
>KOG3807|consensus
Probab=29.99 E-value=6.1e+02 Score=25.80 Aligned_cols=109 Identities=16% Similarity=0.137 Sum_probs=60.0
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh--HHHH-HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK--FAEL-ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRE 333 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~--~a~l-e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~ 333 (521)
.++..++.+-++.-..|+.++|... |.-| |+..-.+..|..+|.+|++... ..+..-- -...+|.
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~Ti~~AE~l~k~ALka~e-----~~yr~sq-q~qh~~~------ 261 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECATAYVLLAEEEATTIVDAERLFKQALKAGE-----TIYRQSQ-QCQHQSP------ 261 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhhhhhHHHHHHHHHHHHHHHH-----HHHhhHH-HHhhhcc------
Confidence 3444555555666677888888765 4433 4555677888889988886321 1111110 0011111
Q ss_pred HHHHHHhcCCCHHHHHH--HHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 334 LHERLLERTVHVKVWMN--YAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 334 l~eral~~~~~~~vwi~--ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.++.......++-+++. ++..-.+.|. ..+|.++|+...+.+|-
T Consensus 262 ~~da~~rRDtnvl~YIKRRLAMCARklGr---lrEA~K~~RDL~ke~pl 307 (556)
T KOG3807|consen 262 QHEAQLRRDTNVLVYIKRRLAMCARKLGR---LREAVKIMRDLMKEFPL 307 (556)
T ss_pred chhhhhhcccchhhHHHHHHHHHHHHhhh---HHHHHHHHHHHhhhccH
Confidence 11222233345556655 5566666666 77777777766666554
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=29.04 E-value=9.5e+02 Score=27.76 Aligned_cols=241 Identities=14% Similarity=0.035 Sum_probs=0.0
Q ss_pred hcCChhhhhhhcC---------------------CCcH---------------HHhcccchhhHHH-HhhhccCCCCC--
Q psy8681 69 KQGNKIGEEGANK---------------------ENEE---------------EERDKERDREEED-ERKDEGDRDSD-- 109 (521)
Q Consensus 69 ~~gn~~~Ar~ife---------------------~P~~---------------e~r~g~~e~Ar~~-eral~~~~~P~-- 109 (521)
..|+++.|..+.+ -|.+ .....++.+|-.+ .++- ..-|.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~--~~l~~~~ 449 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLE--HFLKAPM 449 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHH--HHhCcCc
Q ss_pred --------hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc--HHHHHHHHHHHHhhhhhccccchhhHHHHHhhh
Q psy8681 110 --------TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD--EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179 (521)
Q Consensus 110 --------~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~--~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~ 179 (521)
...--.-+.+....|+++.|.++-+.++..+|..... ..+....+....-.|
T Consensus 450 ~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G------------------ 511 (894)
T COG2909 450 HSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRG------------------ 511 (894)
T ss_pred ccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhc------------------
Q ss_pred hhhhhHHHHHHHHHHHHhc----CChhhHHHHHHHH--HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDH----IPKDRTAEIYKAY--TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~----~P~~~~~~l~~~~--~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
++++|+.+...+.+. ..... .+|..+ ..+....| +.+...-...+...+++-+...|.+.-.-..+
T Consensus 512 ----~~~~Al~~~~~a~~~a~~~~~~~l--~~~~~~~~s~il~~qG--q~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 512 ----ELTQALALMQQAEQMARQHDVYHL--ALWSLLQQSEILEAQG--QVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred ----hHHHHHHHHHHHHHHHHHcccHHH--HHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCCHHHHHHHHHHHHc-----CCCCCCcHHHHH
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTK------------FAELESLLGDMERARAIYELAIS-----QPRLDMPELVWK 316 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~~e~Ar~ife~al~-----~~~~~~~~~lw~ 316 (521)
+.++....+.+.+..-...+++..-... ++.++...|+.+.|......... .+..+....+..
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q ss_pred HHHHHHHhcCChHHHHHHHHH
Q psy8681 317 AYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~er 337 (521)
.-..+-..+|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
No 367
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=29.03 E-value=2.6e+02 Score=21.60 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=30.9
Q ss_pred hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH
Q psy8681 328 RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEF 397 (521)
Q Consensus 328 ~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~f 397 (521)
+++|+.++.+|+.. -..|+ ++.|..+|..|++.|-..........+...+..|
T Consensus 3 l~kai~Lv~~A~~e--------------D~~gn---y~eA~~lY~~ale~~~~ekn~~~k~~i~~K~~~~ 55 (75)
T cd02680 3 LERAHFLVTQAFDE--------------DEKGN---AEEAIELYTEAVELCINTSNETMDQALQTKLKQL 55 (75)
T ss_pred HHHHHHHHHHHHHh--------------hHhhh---HHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHH
Confidence 45666666666532 22344 9999999999999875421112233444555433
No 368
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=28.57 E-value=92 Score=30.47 Aligned_cols=57 Identities=18% Similarity=-0.017 Sum_probs=52.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcc
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEEN 144 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~ 144 (521)
.++.+.++.|... ++.+ ...| ++.-|..-|-++.+.|.+.-|+.-++..++..|+++
T Consensus 191 ~~~e~~~~~al~~~~r~l--~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 191 LLRELQWELALRVAERLL--DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHhhchHHHHHHHHHHH--hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 7788899999999 9999 9999 788899999999999999999999999999988654
No 369
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=26.76 E-value=1.7e+02 Score=20.88 Aligned_cols=22 Identities=14% Similarity=0.122 Sum_probs=11.0
Q ss_pred HHcCCHHHHHHHHHHHHHcCCc
Q psy8681 258 EDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+.|+.+.|+...+.+++..|.
T Consensus 12 ykl~~Y~~A~~~~~~lL~~eP~ 33 (53)
T PF14853_consen 12 YKLGEYEKARRYCDALLEIEPD 33 (53)
T ss_dssp HHTT-HHHHHHHHHHHHHHTTS
T ss_pred HHhhhHHHHHHHHHHHHhhCCC
Confidence 4445555555555555555554
No 370
>KOG1972|consensus
Probab=26.30 E-value=7.1e+02 Score=28.45 Aligned_cols=34 Identities=9% Similarity=0.042 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.+..|-.|..+..+.++ .+..-+++.+|+..||-
T Consensus 835 ~~~~WR~yl~~lskl~~---~~~~~~~~tkA~~sCpW 868 (913)
T KOG1972|consen 835 ENSKWRDYLEALSKLLN---KERSKAASTKALDSCPW 868 (913)
T ss_pred chhHHHHHHHHHHHhhh---hhhhHHHHHHHhhcCch
Confidence 57899999999999988 99999999999999984
No 371
>KOG1166|consensus
Probab=26.14 E-value=2.3e+02 Score=33.26 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHcCC-CC---CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhh
Q psy8681 292 MERARAIYELAISQP-RL---DMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSV 364 (521)
Q Consensus 292 ~e~Ar~ife~al~~~-~~---~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~ 364 (521)
....+.+.++++..- +. .....+...|+. +.....+..++.+|..+.... .+..++..|+..+...+. +
T Consensus 55 ~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~-~~~~e~~~d~~d~f~~m~~kgIg~~lalfYe~~a~~lE~k~~---~ 130 (974)
T KOG1166|consen 55 QSLLRNLLERCLEELEDLKRYRNDPRFLILWCS-LELREELQDAEDFFSYLENKGIGTTLALFYEAYAKHLERKEY---F 130 (974)
T ss_pred hhhHHHHHHHHHHhccchhhccccHHHHHHHHh-HHHHHHHhhHHHHHHHHHhccccchhHHHHHHHHHHHHHHHH---H
Confidence 455666666665521 11 011222333322 123467789999999888764 366778889998888877 9
Q ss_pred HHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCH
Q psy8681 365 SLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 365 ~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~ 404 (521)
.+|..+|+.+++...... ..|...+..|..+.|-.
T Consensus 131 keA~~v~q~Giq~~aeP~-----~rL~~~~~~F~~r~~r~ 165 (974)
T KOG1166|consen 131 KEAKEVFQLGIQNKAEPL-----ERLLRQYSNFQQRLMRQ 165 (974)
T ss_pred HHHHHHHHHHHHhhcCCH-----HHHHHHHHHHHHHHhhh
Confidence 999999999998765432 47888888888877754
No 372
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=26.02 E-value=2.7e+02 Score=21.39 Aligned_cols=16 Identities=19% Similarity=0.156 Sum_probs=7.9
Q ss_pred CChHHHHHHHHHHHhc
Q psy8681 326 GERDKVRELHERLLER 341 (521)
Q Consensus 326 g~~~~Ar~l~eral~~ 341 (521)
|+++.|..+|..+|..
T Consensus 20 g~y~eA~~lY~~ale~ 35 (75)
T cd02684 20 GDAAAALSLYCSALQY 35 (75)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 4455555555554443
No 373
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=25.62 E-value=4.1e+02 Score=22.46 Aligned_cols=106 Identities=15% Similarity=0.122 Sum_probs=50.0
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
++..+..++.+......++.++.+.+ .......+..-.........+.+-.+.|-++.+.-+|.+.- .|
T Consensus 30 Le~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~----------~~ 98 (140)
T smart00299 30 LESALKLNSENPALQTKLIELYAKYD-PQKEIERLDNKSNHYDIEKVGKLCEKAKLYEEAVELYKKDG----------NF 98 (140)
T ss_pred HHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHhccccCCHHHHHHHHHHcCcHHHHHHHHHhhc----------CH
Confidence 55666666777778888888877653 33444444421111111112233333344444444443310 12
Q ss_pred HHHHHHHHhc-CChHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Q psy8681 316 KAYIDFEVGQ-GERDKVRELHERLLERTVHVKVWMNYAQFEM 356 (521)
Q Consensus 316 ~~yi~~e~~~-g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~ 356 (521)
...++..... ++++.|.+.+.+ ...+++|...+.+..
T Consensus 99 ~~Al~~~l~~~~d~~~a~~~~~~----~~~~~lw~~~~~~~l 136 (140)
T smart00299 99 KDAIVTLIEHLGNYEKAIEYFVK----QNNPELWAEVLKALL 136 (140)
T ss_pred HHHHHHHHHcccCHHHHHHHHHh----CCCHHHHHHHHHHHH
Confidence 2222222222 445555444443 236778888777654
No 374
>KOG2041|consensus
Probab=25.02 E-value=1e+03 Score=26.86 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=29.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
++.....-|.+..+.-.++.++.+.|--++|...|-|
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 4445555788888888889999999988888888766
No 375
>KOG1811|consensus
Probab=24.62 E-value=1.8e+02 Score=31.81 Aligned_cols=46 Identities=11% Similarity=0.039 Sum_probs=36.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE 157 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e 157 (521)
...|..|+-...+.+++..||.-|.+|+..-|++. +.+.....+.-
T Consensus 587 f~aW~AWGlA~Lk~e~~aaAR~KFkqafklkgedi--pdvi~diin~i 632 (1141)
T KOG1811|consen 587 FGAWHAWGLACLKAENLAAAREKFKQAFKLKGEDI--PDVIFDIINLI 632 (1141)
T ss_pred ccHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCCcc--chHHHHHHHhh
Confidence 46899999999999999999999999999866543 44555555544
No 376
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=24.55 E-value=5.2e+02 Score=27.50 Aligned_cols=55 Identities=16% Similarity=0.120 Sum_probs=31.7
Q ss_pred HHcCCHHHHHHHHHHHHcCC-----CC-CC-----cHHHHHHHHHH--HHhcCChHHHHHHHHHHHhc
Q psy8681 287 SLLGDMERARAIYELAISQP-----RL-DM-----PELVWKAYIDF--EVGQGERDKVRELHERLLER 341 (521)
Q Consensus 287 ~~~g~~e~Ar~ife~al~~~-----~~-~~-----~~~lw~~yi~~--e~~~g~~~~Ar~l~eral~~ 341 (521)
.+.|.+..|...+...-+.- +. +. -..+|...|.. ++..|.+.++|.++++.+..
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~ 157 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIER 157 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 45677777777776665531 10 00 12345544433 55678888888777776654
No 377
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=23.57 E-value=4.4e+02 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=19.4
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+..|++-+|..|.+..+...+.+.
T Consensus 7 ~~rGnhiKAL~iied~i~~h~~~~ 30 (111)
T PF04781_consen 7 FARGNHIKALEIIEDLISRHGEDE 30 (111)
T ss_pred HHccCHHHHHHHHHHHHHHccCCC
Confidence 344689999999999998877765
No 378
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=23.17 E-value=7e+02 Score=24.27 Aligned_cols=155 Identities=16% Similarity=0.124 Sum_probs=85.3
Q ss_pred hcccchhhHHH-HhhhccCCC----CC-----hhhHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCC----ccc--c-HHH
Q psy8681 88 RDKERDREEED-ERKDEGDRD----SD-----TTYGMRELVFEEQNG-FVSGARKVYERAVEFFGE----ENL--D-EKL 149 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~----P~-----~~~W~~~a~~e~~~g-~~~~Ar~vye~Al~~~~~----~~~--~-~~l 149 (521)
++|+++.|... .|+- ... |+ ..+....|.-....+ +++.|..-+++|.+.+.. ... + ..+
T Consensus 5 ~~~~~~~A~~~~~K~~--~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAK--DLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhCCHHHHHHHHHHhh--hHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 45666666666 6664 322 32 345666666666777 899999999999988521 011 1 112
Q ss_pred ----HHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 150 ----FIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 150 ----w~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
...++......+ .....++|..+.+.+-...|... .++...+.+..+.++.+.+.
T Consensus 83 r~~iL~~La~~~l~~~-------------------~~~~~~ka~~~l~~l~~e~~~~~--~~~~L~l~il~~~~~~~~~~ 141 (278)
T PF08631_consen 83 RLSILRLLANAYLEWD-------------------TYESVEKALNALRLLESEYGNKP--EVFLLKLEILLKSFDEEEYE 141 (278)
T ss_pred HHHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHHHHhCCCCc--HHHHHHHHHHhccCChhHHH
Confidence 122222222111 01245667777777766677655 56666666666667777777
Q ss_pred HHHHhhHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 226 DVIVSKRKFQYEEEVNSNP---NNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P---~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
++ +.+++...+ .+.+.-...+..+.... ...+...+...+
T Consensus 142 ~~--------L~~mi~~~~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l 184 (278)
T PF08631_consen 142 EI--------LMRMIRSVDHSESNFDSILHHIKQLAEKS-PELAAFCLDYLL 184 (278)
T ss_pred HH--------HHHHHHhcccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHH
Confidence 66 777777654 23344444444434333 334444444444
No 379
>KOG0687|consensus
Probab=22.53 E-value=2.8e+02 Score=28.10 Aligned_cols=97 Identities=8% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh---------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---------------FAELESLLGDMERARAIYELAISQPRLDMPE 312 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~ 312 (521)
++|...+.++.+.|+.+.|...|.+.....-... |.....-...++.|..+++++-.....+
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN--- 181 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN--- 181 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh---
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTVHVKV 347 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~v 347 (521)
.+=.-.+-+.....++..|-.+|-.++..+.+.++
T Consensus 182 RlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El 216 (393)
T KOG0687|consen 182 RLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYEL 216 (393)
T ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHcccccceec
No 380
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=22.00 E-value=1.8e+02 Score=27.94 Aligned_cols=43 Identities=19% Similarity=0.166 Sum_probs=37.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 234 ~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
..|.+|+...|.+...|+.++.+....|+.-.|.-.|-|++..
T Consensus 3 ~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 3 RYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhc
Confidence 4499999999999999999999999999998999999999864
No 381
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=20.99 E-value=3.7e+02 Score=25.80 Aligned_cols=61 Identities=20% Similarity=0.298 Sum_probs=43.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh-CCCCHHHHHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS-NPNNYDAWFDYLRLLED 259 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~-~P~~~~~W~~y~~~~~~ 259 (521)
|+..|.+|+...|..- ..|+.++-+....|+.-.+. ..|-+++.. .|. +.+..++..+..+
T Consensus 1 A~~~Y~~A~~l~P~~G--~p~nQLAvl~~~~~~~l~av--------y~y~Rsl~~~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG--NPYNQLAVLASYQGDDLDAV--------YYYIRSLAVRIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS--HHHHHHHHHHHHTT-HHHHH--------HHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC--CcccchhhhhccccchHHHH--------HHHHHHHhcCCCc-HHHHHHHHHHHHH
Confidence 6789999999999987 88999988888777765554 337777765 444 6777777777666
No 382
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=20.28 E-value=6.2e+02 Score=22.54 Aligned_cols=100 Identities=15% Similarity=0.125 Sum_probs=65.6
Q ss_pred cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHH
Q psy8681 218 YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARA 297 (521)
Q Consensus 218 ~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ 297 (521)
.++...++.+ +...--.-|+...+-.--+.++...|++++|..+|......-|.. ..++.
T Consensus 23 ~~d~~D~e~l--------LdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~------------p~~kA 82 (153)
T TIGR02561 23 SADPYDAQAM--------LDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAP------------PYGKA 82 (153)
T ss_pred cCCHHHHHHH--------HHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCc------------hHHHH
Confidence 4555566654 455555678887777777777888899999999988866544332 23333
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 298 IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 298 ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
++-.++..-. ..-|..|.+-....|....++.+-+.+.-.
T Consensus 83 L~A~CL~al~----Dp~Wr~~A~~~le~~~~~~a~~Lv~al~g~ 122 (153)
T TIGR02561 83 LLALCLNAKG----DAEWHVHADEVLARDADADAVALVRALLGA 122 (153)
T ss_pred HHHHHHHhcC----ChHHHHHHHHHHHhCCCHhHHHHHHHHhcc
Confidence 4444444211 127999988777788888888887777644
Done!