Query psy8681
Match_columns 521
No_of_seqs 395 out of 2240
Neff 8.6
Searched_HMMs 29240
Date Sat Aug 17 01:02:22 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8681.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8681hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4e6h_A MRNA 3'-END-processing 100.0 1.6E-31 5.3E-36 293.1 34.1 347 49-417 55-570 (679)
2 2ooe_A Cleavage stimulation fa 100.0 3.7E-30 1.3E-34 276.5 35.4 356 50-414 3-489 (530)
3 2uy1_A Cleavage stimulation fa 100.0 2.5E-29 8.6E-34 267.6 30.7 327 66-419 3-415 (493)
4 2ooe_A Cleavage stimulation fa 99.9 1.5E-24 5.2E-29 232.7 26.7 319 47-382 33-497 (530)
5 4e6h_A MRNA 3'-END-processing 99.9 3.7E-24 1.3E-28 234.6 25.8 320 46-382 86-575 (679)
6 2uy1_A Cleavage stimulation fa 99.9 3.2E-25 1.1E-29 236.0 16.8 297 94-414 66-449 (493)
7 1w3b_A UDP-N-acetylglucosamine 99.9 1.2E-22 4.1E-27 208.1 33.4 314 53-414 26-365 (388)
8 1w3b_A UDP-N-acetylglucosamine 99.9 2E-22 6.8E-27 206.4 33.9 292 49-382 56-373 (388)
9 2ond_A Cleavage stimulation fa 99.9 7.8E-23 2.7E-27 204.0 28.4 248 109-382 7-275 (308)
10 2y4t_A DNAJ homolog subfamily 99.9 4.3E-21 1.5E-25 199.8 33.5 304 51-382 17-363 (450)
11 2ond_A Cleavage stimulation fa 99.9 1.7E-21 5.8E-26 194.3 25.8 215 93-344 33-273 (308)
12 3ieg_A DNAJ homolog subfamily 99.9 2.8E-20 9.6E-25 186.2 34.8 298 60-382 4-340 (359)
13 2xpi_A Anaphase-promoting comp 99.9 2.7E-20 9.1E-25 201.1 36.4 310 57-414 197-576 (597)
14 3ieg_A DNAJ homolog subfamily 99.9 1.1E-18 3.8E-23 174.5 36.3 281 86-414 13-332 (359)
15 2xpi_A Anaphase-promoting comp 99.9 8E-20 2.7E-24 197.4 29.3 278 65-382 280-584 (597)
16 2y4t_A DNAJ homolog subfamily 99.9 1.7E-18 5.8E-23 180.1 35.4 283 86-414 36-355 (450)
17 2gw1_A Mitochondrial precursor 99.9 1.8E-19 6.1E-24 190.2 28.2 275 89-404 202-505 (514)
18 3hym_B Cell division cycle pro 99.8 3.9E-19 1.3E-23 176.2 28.1 274 88-406 34-323 (330)
19 4eqf_A PEX5-related protein; a 99.8 2.7E-19 9.1E-24 181.4 26.9 272 109-420 64-359 (365)
20 3fp2_A TPR repeat-containing p 99.8 1.7E-18 5.7E-23 184.2 33.8 261 91-392 217-506 (537)
21 4eqf_A PEX5-related protein; a 99.8 1.1E-19 3.6E-24 184.3 22.6 252 86-379 75-358 (365)
22 1fch_A Peroxisomal targeting s 99.8 1.8E-19 6.2E-24 182.1 23.8 272 66-380 34-362 (368)
23 1fch_A Peroxisomal targeting s 99.8 9.8E-19 3.4E-23 176.7 28.6 291 86-419 35-361 (368)
24 3hym_B Cell division cycle pro 99.8 8.5E-18 2.9E-22 166.5 34.0 264 105-414 16-296 (330)
25 2gw1_A Mitochondrial precursor 99.8 1.6E-18 5.6E-23 182.8 30.5 331 60-414 7-475 (514)
26 3fp2_A TPR repeat-containing p 99.8 5.9E-18 2E-22 179.9 30.6 330 60-414 26-488 (537)
27 3cv0_A Peroxisome targeting si 99.8 1.3E-18 4.4E-23 172.2 23.0 253 87-381 32-319 (327)
28 3cv0_A Peroxisome targeting si 99.8 9.5E-17 3.3E-21 158.7 29.1 270 109-418 20-316 (327)
29 2h6f_A Protein farnesyltransfe 99.8 2.6E-16 9E-21 161.7 26.8 241 101-381 89-352 (382)
30 2h6f_A Protein farnesyltransfe 99.7 1.7E-16 5.7E-21 163.2 25.0 249 51-357 88-365 (382)
31 2pl2_A Hypothetical conserved 99.7 3.9E-16 1.3E-20 147.3 21.7 198 108-375 2-212 (217)
32 2pl2_A Hypothetical conserved 99.7 4.8E-16 1.6E-20 146.6 21.2 183 146-383 4-186 (217)
33 3u4t_A TPR repeat-containing p 99.7 8.1E-16 2.8E-20 148.5 23.1 234 110-382 3-255 (272)
34 3mkr_A Coatomer subunit epsilo 99.7 5.2E-15 1.8E-19 146.3 28.3 246 88-383 11-270 (291)
35 3u4t_A TPR repeat-containing p 99.7 7.3E-16 2.5E-20 148.8 21.4 237 87-358 14-268 (272)
36 3uq3_A Heat shock protein STI1 99.7 6.1E-15 2.1E-19 140.4 27.6 223 110-379 5-238 (258)
37 4g1t_A Interferon-induced prot 99.7 8.3E-16 2.8E-20 161.0 23.3 291 56-382 90-464 (472)
38 2q7f_A YRRB protein; TPR, prot 99.7 3.1E-15 1.1E-19 141.4 20.5 210 109-355 22-237 (243)
39 3sf4_A G-protein-signaling mod 99.7 3.3E-15 1.1E-19 152.2 22.2 281 88-403 21-362 (406)
40 3uq3_A Heat shock protein STI1 99.7 9.2E-15 3.2E-19 139.1 22.7 211 88-342 17-237 (258)
41 4g1t_A Interferon-induced prot 99.7 9E-14 3.1E-18 145.5 32.4 297 65-411 59-395 (472)
42 2q7f_A YRRB protein; TPR, prot 99.6 1.5E-14 5.2E-19 136.7 21.4 184 184-382 38-227 (243)
43 2ho1_A Type 4 fimbrial biogene 99.6 1.1E-13 3.7E-18 132.0 27.2 203 110-381 37-242 (252)
44 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.2E-14 7.5E-19 138.2 22.6 217 89-343 18-246 (275)
45 3ro2_A PINS homolog, G-protein 99.6 7.1E-15 2.4E-19 144.8 18.7 259 88-381 17-336 (338)
46 1xnf_A Lipoprotein NLPI; TPR, 99.6 5.3E-14 1.8E-18 135.5 24.4 222 122-381 17-248 (275)
47 2vq2_A PILW, putative fimbrial 99.6 1.3E-13 4.5E-18 128.2 26.1 206 107-381 4-215 (225)
48 2ho1_A Type 4 fimbrial biogene 99.6 1.2E-13 4.2E-18 131.6 25.0 198 206-418 38-243 (252)
49 4a1s_A PINS, partner of inscut 99.6 2.1E-14 7.1E-19 147.3 20.6 259 88-381 60-376 (411)
50 3vtx_A MAMA; tetratricopeptide 99.6 9.2E-14 3.1E-18 126.3 22.0 163 206-381 6-174 (184)
51 3ro2_A PINS homolog, G-protein 99.6 7E-14 2.4E-18 137.6 22.9 272 110-414 5-329 (338)
52 4a1s_A PINS, partner of inscut 99.6 8.4E-14 2.9E-18 142.8 24.1 272 110-414 48-369 (411)
53 3vtx_A MAMA; tetratricopeptide 99.6 9.7E-14 3.3E-18 126.2 22.0 169 109-343 4-172 (184)
54 3mkr_A Coatomer subunit epsilo 99.6 4.4E-13 1.5E-17 132.4 28.2 234 69-346 11-269 (291)
55 2vq2_A PILW, putative fimbrial 99.6 3.5E-13 1.2E-17 125.3 26.1 167 206-383 9-183 (225)
56 3sf4_A G-protein-signaling mod 99.6 1.4E-13 4.9E-18 140.0 25.2 273 109-414 8-333 (406)
57 1ouv_A Conserved hypothetical 99.6 1.5E-12 5.3E-17 126.1 30.3 226 107-381 2-255 (273)
58 4abn_A Tetratricopeptide repea 99.6 1.1E-13 3.9E-18 146.2 19.7 216 90-374 82-318 (474)
59 4h7y_A Dual specificity protei 99.5 1.6E-13 5.3E-18 118.0 14.5 114 241-381 7-127 (161)
60 4i17_A Hypothetical protein; T 99.5 7.6E-12 2.6E-16 117.8 25.8 202 109-353 6-222 (228)
61 3nf1_A KLC 1, kinesin light ch 99.5 2E-13 6.9E-18 133.6 14.9 243 105-380 21-310 (311)
62 4abn_A Tetratricopeptide repea 99.5 1.5E-12 5.2E-17 137.5 22.3 184 184-382 83-292 (474)
63 4gyw_A UDP-N-acetylglucosamine 99.5 8.8E-13 3E-17 146.0 20.3 165 105-304 3-173 (723)
64 4gyw_A UDP-N-acetylglucosamine 99.5 1.6E-12 5.5E-17 143.9 21.6 170 145-380 7-177 (723)
65 1ouv_A Conserved hypothetical 99.5 3.2E-11 1.1E-15 116.7 28.4 207 89-344 19-254 (273)
66 2xm6_A Protein corresponding t 99.5 9.4E-11 3.2E-15 123.9 33.5 290 60-380 76-435 (490)
67 3nf1_A KLC 1, kinesin light ch 99.4 5.7E-13 2E-17 130.3 13.5 243 56-343 23-309 (311)
68 2xm6_A Protein corresponding t 99.4 6.8E-10 2.3E-14 117.3 37.3 311 65-414 47-429 (490)
69 3ulq_A Response regulator aspa 99.4 1.8E-11 6E-16 124.9 23.3 234 114-380 107-371 (383)
70 1hz4_A MALT regulatory protein 99.4 5.6E-11 1.9E-15 120.4 26.9 259 88-381 26-326 (373)
71 3as5_A MAMA; tetratricopeptide 99.4 1.5E-11 5.2E-16 110.1 19.0 152 91-279 23-176 (186)
72 4i17_A Hypothetical protein; T 99.4 4E-11 1.4E-15 112.8 22.0 196 145-382 5-214 (228)
73 3as5_A MAMA; tetratricopeptide 99.4 4.6E-11 1.6E-15 106.9 21.2 155 184-382 23-178 (186)
74 3qky_A Outer membrane assembly 99.4 9E-12 3.1E-16 120.0 17.3 162 86-281 25-229 (261)
75 3qky_A Outer membrane assembly 99.4 1.4E-11 4.9E-16 118.6 17.9 198 105-344 9-227 (261)
76 3edt_B KLC 2, kinesin light ch 99.4 8.1E-12 2.8E-16 120.0 16.0 151 94-278 26-200 (283)
77 1hz4_A MALT regulatory protein 99.4 3.4E-10 1.1E-14 114.6 28.6 271 110-414 14-319 (373)
78 4ga2_A E3 SUMO-protein ligase 99.3 1.5E-11 5.1E-16 108.7 14.2 139 88-262 9-149 (150)
79 3ulq_A Response regulator aspa 99.3 7.2E-11 2.5E-15 120.3 19.1 222 86-342 113-369 (383)
80 3urz_A Uncharacterized protein 99.3 1.6E-10 5.4E-15 107.8 19.6 153 183-348 18-193 (208)
81 3urz_A Uncharacterized protein 99.3 1.1E-10 3.7E-15 108.9 18.1 165 109-308 3-189 (208)
82 3edt_B KLC 2, kinesin light ch 99.3 4.4E-11 1.5E-15 114.8 15.5 223 122-377 13-281 (283)
83 2pzi_A Probable serine/threoni 99.3 3.8E-11 1.3E-15 132.6 16.7 182 105-356 388-579 (681)
84 2r5s_A Uncharacterized protein 99.3 5.9E-11 2E-15 107.4 15.2 168 107-340 2-172 (176)
85 2yhc_A BAMD, UPF0169 lipoprote 99.3 3.2E-10 1.1E-14 106.9 20.1 193 109-343 3-215 (225)
86 1qqe_A Vesicular transport pro 99.3 1.8E-10 6E-15 113.4 18.7 201 113-343 40-271 (292)
87 4ga2_A E3 SUMO-protein ligase 99.3 9.6E-11 3.3E-15 103.4 14.9 139 181-360 9-149 (150)
88 2pzi_A Probable serine/threoni 99.3 4.6E-10 1.6E-14 123.9 23.7 160 86-281 401-568 (681)
89 3q15_A PSP28, response regulat 99.3 6.6E-10 2.3E-14 113.1 23.0 235 112-379 103-367 (378)
90 3qou_A Protein YBBN; thioredox 99.2 2E-10 6.9E-15 112.8 17.7 139 107-280 113-252 (287)
91 1qqe_A Vesicular transport pro 99.2 3E-10 1E-14 111.7 18.4 188 184-380 52-272 (292)
92 3q15_A PSP28, response regulat 99.2 5.8E-10 2E-14 113.5 20.8 221 86-341 111-365 (378)
93 2yhc_A BAMD, UPF0169 lipoprote 99.2 6.5E-10 2.2E-14 104.8 19.2 186 87-307 15-215 (225)
94 3dra_A Protein farnesyltransfe 99.2 2E-09 6.8E-14 106.7 23.2 234 89-352 45-300 (306)
95 1xi4_A Clathrin heavy chain; a 99.2 3.7E-09 1.2E-13 120.7 27.8 287 65-409 1057-1376(1630)
96 2vsy_A XCC0866; transferase, g 99.2 3E-10 1E-14 122.3 18.4 156 89-281 2-162 (568)
97 3gyz_A Chaperone protein IPGC; 99.2 2.6E-10 8.9E-15 101.1 14.5 114 236-383 25-139 (151)
98 3qou_A Protein YBBN; thioredox 99.2 5.6E-10 1.9E-14 109.6 17.8 164 199-377 113-284 (287)
99 2fo7_A Synthetic consensus TPR 99.2 1.4E-09 4.8E-14 91.4 17.7 134 111-279 2-135 (136)
100 2r5s_A Uncharacterized protein 99.2 2.2E-10 7.4E-15 103.6 12.4 154 86-276 16-173 (176)
101 4gco_A Protein STI-1; structur 99.1 1.3E-09 4.3E-14 93.3 14.5 117 105-256 7-124 (126)
102 2vsy_A XCC0866; transferase, g 99.1 1.7E-09 5.7E-14 116.6 18.2 151 219-382 3-162 (568)
103 3dss_A Geranylgeranyl transfer 99.1 7.1E-08 2.4E-12 96.2 27.7 241 88-381 41-308 (331)
104 3e4b_A ALGK; tetratricopeptide 99.1 1.2E-08 4.3E-13 106.7 22.6 282 66-377 12-351 (452)
105 3gyz_A Chaperone protein IPGC; 99.1 2.9E-10 1E-14 100.8 8.6 88 184-281 51-138 (151)
106 2ifu_A Gamma-SNAP; membrane fu 99.1 4.6E-09 1.6E-13 103.9 18.2 213 183-410 5-254 (307)
107 3dra_A Protein farnesyltransfe 99.1 5.8E-08 2E-12 96.1 25.7 230 114-381 36-292 (306)
108 4h7y_A Dual specificity protei 99.0 2.8E-09 9.7E-14 91.6 13.5 117 106-255 8-136 (161)
109 2fo7_A Synthetic consensus TPR 99.0 1.2E-08 4E-13 85.6 17.4 128 248-380 2-135 (136)
110 1p5q_A FKBP52, FK506-binding p 99.0 9.1E-10 3.1E-14 110.8 11.8 156 87-276 124-294 (336)
111 2vgx_A Chaperone SYCD; alterna 99.0 8.8E-09 3E-13 90.6 15.7 114 236-383 10-124 (148)
112 4gco_A Protein STI-1; structur 99.0 7E-09 2.4E-13 88.6 13.6 88 184-281 28-115 (126)
113 1b89_A Protein (clathrin heavy 99.0 1.5E-09 5.2E-14 111.7 10.4 253 60-374 33-308 (449)
114 4f3v_A ESX-1 secretion system 99.0 1.4E-08 4.8E-13 98.7 16.7 195 122-351 18-247 (282)
115 2vgx_A Chaperone SYCD; alterna 99.0 2.2E-09 7.6E-14 94.4 10.1 86 184-279 36-121 (148)
116 2ifu_A Gamma-SNAP; membrane fu 99.0 1.3E-08 4.6E-13 100.5 16.6 196 89-343 4-225 (307)
117 2xcb_A PCRH, regulatory protei 98.9 9.8E-09 3.4E-13 89.1 13.6 114 236-383 7-121 (142)
118 1b89_A Protein (clathrin heavy 98.9 3E-09 1E-13 109.5 11.5 261 88-414 15-308 (449)
119 2e2e_A Formate-dependent nitri 98.9 1E-08 3.4E-13 92.2 13.6 87 184-280 59-148 (177)
120 1p5q_A FKBP52, FK506-binding p 98.9 5.9E-10 2E-14 112.2 5.7 125 123-280 126-263 (336)
121 4f3v_A ESX-1 secretion system 98.9 2E-09 6.8E-14 104.7 9.1 184 184-380 21-240 (282)
122 1a17_A Serine/threonine protei 98.9 4.5E-08 1.5E-12 86.0 17.3 131 110-275 13-145 (166)
123 2c2l_A CHIP, carboxy terminus 98.9 6.1E-09 2.1E-13 101.9 12.4 191 146-377 3-199 (281)
124 1xi4_A Clathrin heavy chain; a 98.9 5.9E-07 2E-11 102.9 29.8 269 65-369 1084-1376(1630)
125 2e2e_A Formate-dependent nitri 98.9 1.7E-08 5.8E-13 90.6 13.5 129 86-251 20-153 (177)
126 2xcb_A PCRH, regulatory protei 98.8 2.3E-08 7.8E-13 86.8 12.2 118 99-253 8-126 (142)
127 3e4b_A ALGK; tetratricopeptide 98.8 8.9E-08 3.1E-12 100.2 18.9 250 86-375 13-314 (452)
128 1hh8_A P67PHOX, NCF-2, neutrop 98.8 5.5E-08 1.9E-12 89.7 15.2 146 112-302 8-169 (213)
129 2lni_A Stress-induced-phosphop 98.8 6.1E-08 2.1E-12 81.6 14.0 119 109-262 15-133 (133)
130 1a17_A Serine/threonine protei 98.8 1E-07 3.5E-12 83.6 16.0 87 184-280 28-114 (166)
131 2vyi_A SGTA protein; chaperone 98.8 9.1E-08 3.1E-12 79.9 14.8 120 109-263 11-130 (131)
132 1na0_A Designed protein CTPR3; 98.8 1.9E-07 6.5E-12 77.2 16.6 121 106-261 3-125 (125)
133 3upv_A Heat shock protein STI1 98.8 9.3E-08 3.2E-12 80.6 14.5 115 109-258 3-123 (126)
134 2c2l_A CHIP, carboxy terminus 98.8 2.3E-08 7.7E-13 97.8 11.7 186 109-341 3-199 (281)
135 2fbn_A 70 kDa peptidylprolyl i 98.8 2.8E-08 9.5E-13 91.2 10.4 144 90-267 18-176 (198)
136 3dss_A Geranylgeranyl transfer 98.8 6.6E-06 2.2E-10 82.0 28.2 205 121-381 40-271 (331)
137 1elw_A TPR1-domain of HOP; HOP 98.8 3.5E-07 1.2E-11 74.8 15.8 114 109-257 3-116 (118)
138 3upv_A Heat shock protein STI1 98.7 1.3E-07 4.4E-12 79.8 13.1 84 184-277 19-102 (126)
139 3q7a_A Farnesyltransferase alp 98.7 1.6E-06 5.3E-11 87.0 22.8 161 93-281 71-242 (349)
140 3sz7_A HSC70 cochaperone (SGT) 98.7 1.8E-07 6.1E-12 83.0 14.2 113 109-256 10-122 (164)
141 3q7a_A Farnesyltransferase alp 98.7 2.1E-06 7.1E-11 86.1 23.4 103 54-161 48-173 (349)
142 2dba_A Smooth muscle cell asso 98.7 1.5E-07 5.2E-12 80.8 13.3 123 105-259 22-145 (148)
143 1hxi_A PEX5, peroxisome target 98.7 8.9E-08 3E-12 80.9 11.3 86 184-279 32-117 (121)
144 2hr2_A Hypothetical protein; a 98.7 1E-07 3.5E-12 84.4 12.0 113 110-281 11-136 (159)
145 3rjv_A Putative SEL1 repeat pr 98.7 7.2E-07 2.5E-11 83.0 18.6 178 187-379 4-199 (212)
146 2lni_A Stress-induced-phosphop 98.7 3E-07 1E-11 77.2 14.3 104 145-280 14-117 (133)
147 3sz7_A HSC70 cochaperone (SGT) 98.7 1.7E-07 5.7E-12 83.1 13.3 104 146-281 10-113 (164)
148 1kt0_A FKBP51, 51 kDa FK506-bi 98.7 5.4E-08 1.8E-12 102.1 11.4 154 86-273 244-412 (457)
149 4gcn_A Protein STI-1; structur 98.7 5.9E-07 2E-11 76.4 15.8 115 206-352 9-123 (127)
150 2qfc_A PLCR protein; TPR, HTH, 98.7 1.6E-06 5.5E-11 84.7 21.0 158 213-381 83-270 (293)
151 2vyi_A SGTA protein; chaperone 98.7 2.8E-07 9.6E-12 76.8 13.3 87 184-280 27-113 (131)
152 1na0_A Designed protein CTPR3; 98.7 7.7E-07 2.6E-11 73.4 15.5 112 243-356 4-122 (125)
153 3q49_B STIP1 homology and U bo 98.6 4.1E-07 1.4E-11 77.4 13.4 119 106-259 4-128 (137)
154 3q49_B STIP1 homology and U bo 98.6 3.4E-07 1.1E-11 77.9 12.8 103 145-279 7-109 (137)
155 3gw4_A Uncharacterized protein 98.6 5.5E-07 1.9E-11 81.8 13.8 151 242-395 20-194 (203)
156 1elw_A TPR1-domain of HOP; HOP 98.6 9.3E-07 3.2E-11 72.2 13.8 86 184-279 19-104 (118)
157 3rjv_A Putative SEL1 repeat pr 98.6 2.4E-06 8.2E-11 79.4 17.9 171 127-342 3-198 (212)
158 1hxi_A PEX5, peroxisome target 98.6 4E-07 1.4E-11 76.8 11.4 103 110-247 17-119 (121)
159 2xev_A YBGF; tetratricopeptide 98.6 1.9E-06 6.3E-11 72.3 15.5 118 111-258 3-121 (129)
160 2fbn_A 70 kDa peptidylprolyl i 98.6 1.6E-07 5.5E-12 86.1 9.5 125 124-281 18-156 (198)
161 2kck_A TPR repeat; tetratricop 98.6 2.7E-07 9.4E-12 74.8 9.8 87 184-280 21-110 (112)
162 1hh8_A P67PHOX, NCF-2, neutrop 98.6 2.1E-06 7.2E-11 78.9 17.1 121 89-246 19-154 (213)
163 2qfc_A PLCR protein; TPR, HTH, 98.6 3.1E-06 1.1E-10 82.6 19.0 177 110-341 75-266 (293)
164 3gw4_A Uncharacterized protein 98.5 1.6E-06 5.5E-11 78.7 15.4 156 88-276 4-176 (203)
165 1kt0_A FKBP51, 51 kDa FK506-bi 98.5 1.4E-07 4.6E-12 99.0 8.7 125 123-280 247-384 (457)
166 3rkv_A Putative peptidylprolyl 98.5 1.1E-06 3.8E-11 77.6 13.4 117 110-258 11-143 (162)
167 2dba_A Smooth muscle cell asso 98.5 1.8E-06 6.3E-11 73.9 14.3 107 145-281 26-133 (148)
168 3u3w_A Transcriptional activat 98.5 2.1E-06 7.4E-11 83.7 16.6 159 86-276 85-266 (293)
169 1elr_A TPR2A-domain of HOP; HO 98.5 1.5E-06 5E-11 72.4 13.0 116 110-259 4-124 (131)
170 2kck_A TPR repeat; tetratricop 98.5 9.8E-07 3.3E-11 71.4 11.6 105 107-246 2-110 (112)
171 3u3w_A Transcriptional activat 98.5 5.8E-06 2E-10 80.7 18.9 159 213-381 83-270 (293)
172 2if4_A ATFKBP42; FKBP-like, al 98.5 2.2E-07 7.6E-12 93.3 8.7 148 109-308 178-331 (338)
173 1zu2_A Mitochondrial import re 98.5 3.7E-07 1.3E-11 80.6 8.8 101 87-203 13-125 (158)
174 3rkv_A Putative peptidylprolyl 98.5 1.5E-06 5.2E-11 76.7 12.6 88 184-281 26-131 (162)
175 1wao_1 Serine/threonine protei 98.5 6.3E-08 2.1E-12 102.2 4.0 127 110-271 6-134 (477)
176 1elr_A TPR2A-domain of HOP; HO 98.5 1.6E-06 5.6E-11 72.1 12.1 108 246-353 3-120 (131)
177 4gcn_A Protein STI-1; structur 98.5 1.6E-06 5.6E-11 73.6 12.0 87 183-279 22-115 (127)
178 1dce_A Protein (RAB geranylger 98.4 4.5E-06 1.5E-10 89.8 18.1 165 184-360 44-241 (567)
179 3k9i_A BH0479 protein; putativ 98.4 4.5E-07 1.5E-11 75.6 7.4 89 183-281 4-95 (117)
180 2xev_A YBGF; tetratricopeptide 98.4 3.2E-06 1.1E-10 70.9 12.3 102 87-214 13-119 (129)
181 1ihg_A Cyclophilin 40; ppiase 98.4 3.5E-06 1.2E-10 85.7 14.8 125 110-266 223-360 (370)
182 3ro3_A PINS homolog, G-protein 98.4 4.1E-06 1.4E-10 72.2 13.3 132 247-381 9-162 (164)
183 3mv2_B Coatomer subunit epsilo 98.4 1E-05 3.5E-10 79.6 17.0 176 188-382 85-287 (310)
184 1dce_A Protein (RAB geranylger 98.4 3.3E-06 1.1E-10 90.9 14.3 154 93-281 46-226 (567)
185 3k9i_A BH0479 protein; putativ 98.4 1.4E-06 4.9E-11 72.5 9.1 89 88-203 2-95 (117)
186 1zu2_A Mitochondrial import re 98.4 1.4E-06 4.7E-11 76.9 9.2 95 184-280 17-124 (158)
187 3mv2_B Coatomer subunit epsilo 98.4 5.5E-05 1.9E-09 74.3 21.6 146 95-276 85-240 (310)
188 2if4_A ATFKBP42; FKBP-like, al 98.3 1E-06 3.4E-11 88.5 9.3 133 183-344 193-331 (338)
189 1wao_1 Serine/threonine protei 98.3 2.4E-06 8.3E-11 89.9 12.6 111 180-300 17-134 (477)
190 3ro3_A PINS homolog, G-protein 98.3 7.4E-06 2.5E-10 70.5 13.1 137 110-276 9-158 (164)
191 4b4t_Q 26S proteasome regulato 98.3 1E-05 3.5E-10 82.9 16.0 200 113-342 7-246 (434)
192 2kat_A Uncharacterized protein 98.3 1.3E-05 4.6E-10 66.0 13.0 85 294-383 3-88 (115)
193 1ihg_A Cyclophilin 40; ppiase 98.3 8.9E-06 3.1E-10 82.6 14.1 88 184-279 238-339 (370)
194 4b4t_Q 26S proteasome regulato 98.2 8.4E-06 2.9E-10 83.5 13.3 186 87-304 15-244 (434)
195 4g26_A Pentatricopeptide repea 98.2 0.00011 3.7E-09 77.7 21.9 161 206-378 27-205 (501)
196 4g26_A Pentatricopeptide repea 98.2 0.00014 4.8E-09 76.9 22.5 120 236-356 93-221 (501)
197 2kat_A Uncharacterized protein 98.2 1E-05 3.5E-10 66.8 10.6 83 93-202 2-86 (115)
198 2hr2_A Hypothetical protein; a 98.2 2.1E-05 7.1E-10 69.5 13.0 113 247-381 11-135 (159)
199 3u64_A Protein TP_0956; tetrat 98.1 6.3E-05 2.1E-09 72.6 16.4 114 193-308 141-272 (301)
200 3u64_A Protein TP_0956; tetrat 98.0 0.0002 6.7E-09 69.1 16.4 88 184-279 178-272 (301)
201 3ma5_A Tetratricopeptide repea 98.0 3E-05 1E-09 62.6 9.0 73 106-203 2-75 (100)
202 1na3_A Designed protein CTPR2; 97.9 0.0001 3.5E-09 57.2 11.2 84 146-261 8-91 (91)
203 1na3_A Designed protein CTPR2; 97.9 0.00015 5E-09 56.2 11.1 81 109-216 8-88 (91)
204 2l6j_A TPR repeat-containing p 97.8 1.1E-05 3.8E-10 65.4 4.4 73 184-266 19-97 (111)
205 2l6j_A TPR repeat-containing p 97.8 0.0001 3.5E-09 59.5 9.7 90 108-222 2-95 (111)
206 3ma5_A Tetratricopeptide repea 97.8 0.00022 7.4E-09 57.4 11.1 70 311-383 6-76 (100)
207 3esl_A Checkpoint serine/threo 97.8 0.0013 4.6E-08 59.6 17.0 137 232-400 11-162 (202)
208 3n71_A Histone lysine methyltr 97.7 0.00029 1E-08 74.1 13.5 149 120-349 319-473 (490)
209 3ly7_A Transcriptional activat 97.7 0.0011 3.9E-08 66.3 16.3 143 236-381 183-343 (372)
210 3n71_A Histone lysine methyltr 97.6 0.00016 5.5E-09 76.1 10.3 118 88-227 321-457 (490)
211 3ly7_A Transcriptional activat 97.6 0.0011 3.6E-08 66.5 15.3 121 184-307 214-341 (372)
212 2kc7_A BFR218_protein; tetratr 97.6 0.00011 3.8E-09 58.4 6.2 57 184-250 15-72 (99)
213 4aez_C MAD3, mitotic spindle c 97.5 0.0023 7.8E-08 59.1 15.0 131 233-400 55-197 (223)
214 2wvi_A Mitotic checkpoint seri 97.4 0.0033 1.1E-07 55.3 13.7 131 234-401 4-144 (164)
215 3bee_A Putative YFRE protein; 97.3 0.0023 7.9E-08 50.9 11.1 66 243-308 2-75 (93)
216 3bee_A Putative YFRE protein; 97.3 0.0014 4.8E-08 52.2 9.6 72 199-280 2-76 (93)
217 2kc7_A BFR218_protein; tetratr 97.2 0.005 1.7E-07 48.4 11.6 65 114-203 4-69 (99)
218 1klx_A Cysteine rich protein B 97.1 0.009 3.1E-07 50.9 13.7 111 262-377 10-126 (138)
219 3qww_A SET and MYND domain-con 96.9 0.0022 7.4E-08 66.3 8.5 88 89-198 311-411 (433)
220 3qww_A SET and MYND domain-con 96.8 0.0038 1.3E-07 64.5 10.0 96 123-276 311-411 (433)
221 4a1g_A Mitotic checkpoint seri 96.8 0.026 9E-07 48.9 13.7 115 234-380 11-133 (152)
222 1klx_A Cysteine rich protein B 96.8 0.023 7.7E-07 48.4 13.4 106 184-305 10-126 (138)
223 1pc2_A Mitochondria fission pr 96.8 0.0068 2.3E-07 52.7 9.9 77 232-308 17-103 (152)
224 3esl_A Checkpoint serine/threo 96.8 0.026 8.9E-07 51.1 13.7 137 184-357 7-162 (202)
225 4a1g_A Mitotic checkpoint seri 96.7 0.028 9.6E-07 48.7 12.7 78 184-275 5-93 (152)
226 2v5f_A Prolyl 4-hydroxylase su 96.3 0.035 1.2E-06 44.6 10.7 73 109-203 4-80 (104)
227 3qwp_A SET and MYND domain-con 96.3 0.009 3.1E-07 61.6 8.4 91 86-198 297-400 (429)
228 2wvi_A Mitotic checkpoint seri 96.2 0.073 2.5E-06 46.7 12.4 126 190-358 4-144 (164)
229 3qwp_A SET and MYND domain-con 96.2 0.022 7.6E-07 58.6 10.7 97 122-276 299-400 (429)
230 4aez_C MAD3, mitotic spindle c 96.0 0.1 3.6E-06 48.0 13.3 131 184-357 50-197 (223)
231 1pc2_A Mitochondria fission pr 96.0 0.15 5.2E-06 44.2 13.4 87 291-382 13-105 (152)
232 2v5f_A Prolyl 4-hydroxylase su 95.6 0.12 4.3E-06 41.3 10.8 64 183-254 19-87 (104)
233 1nzn_A CGI-135 protein, fissio 94.7 0.19 6.4E-06 42.0 9.3 79 231-309 19-107 (126)
234 4gns_B Protein CSD3, chitin bi 93.9 8.8 0.0003 42.0 23.2 60 206-273 338-397 (754)
235 3txn_A 26S proteasome regulato 93.6 6.6 0.00023 39.4 23.3 92 252-343 104-212 (394)
236 3mkq_A Coatomer beta'-subunit; 93.0 1.4 4.8E-05 48.2 15.5 67 65-137 637-708 (814)
237 3spa_A Mtrpol, DNA-directed RN 92.8 0.61 2.1E-05 52.5 11.8 64 312-377 165-230 (1134)
238 3spa_A Mtrpol, DNA-directed RN 90.4 2.4 8.2E-05 47.8 13.3 102 247-349 127-240 (1134)
239 3txn_A 26S proteasome regulato 88.1 23 0.00079 35.4 17.9 98 282-382 105-215 (394)
240 1y8m_A FIS1; mitochondria, unk 87.0 5.5 0.00019 33.8 10.2 86 233-319 26-120 (144)
241 3o48_A Mitochondria fission 1 86.7 5.4 0.00018 33.4 9.9 86 233-319 27-121 (134)
242 3mkq_A Coatomer beta'-subunit; 86.6 11 0.00037 40.9 15.7 120 209-338 633-762 (814)
243 1nzn_A CGI-135 protein, fissio 85.8 4.4 0.00015 33.6 9.0 91 184-281 16-108 (126)
244 2ff4_A Probable regulatory pro 85.7 7.2 0.00024 39.0 12.5 57 318-377 177-234 (388)
245 2ff4_A Probable regulatory pro 83.4 8.2 0.00028 38.6 11.7 84 183-274 129-232 (388)
246 1zbp_A Hypothetical protein VP 81.7 11 0.00036 35.7 10.8 57 217-281 9-65 (273)
247 3ffl_A Anaphase-promoting comp 81.0 17 0.00058 31.6 11.0 119 110-272 20-147 (167)
248 3mkq_B Coatomer subunit alpha; 80.6 29 0.001 30.4 14.9 58 245-305 32-89 (177)
249 3mkq_B Coatomer subunit alpha; 78.0 29 0.00099 30.5 11.8 45 86-136 15-60 (177)
250 3o48_A Mitochondria fission 1 73.2 29 0.001 28.9 9.9 75 106-204 36-113 (134)
251 4gns_B Protein CSD3, chitin bi 72.8 32 0.0011 37.6 12.9 113 259-374 260-397 (754)
252 1zbp_A Hypothetical protein VP 69.8 25 0.00085 33.2 9.7 114 86-201 7-132 (273)
253 3ffl_A Anaphase-promoting comp 67.8 60 0.0021 28.1 11.7 92 319-417 27-151 (167)
254 4b4t_R RPN7, 26S proteasome re 66.6 28 0.00095 35.2 10.4 98 282-382 137-242 (429)
255 4b4t_R RPN7, 26S proteasome re 65.7 69 0.0024 32.2 13.1 67 110-198 131-197 (429)
256 1y8m_A FIS1; mitochondria, unk 64.5 64 0.0022 27.2 11.2 75 107-205 36-113 (144)
257 1ya0_A SMG-7 transcript varian 44.1 1.3E+02 0.0043 31.1 10.8 66 184-259 167-232 (497)
258 2xpi_B Anaphase-promoting comp 39.0 15 0.00051 27.1 2.0 15 4-18 5-19 (81)
259 4b4t_P 26S proteasome regulato 37.3 3.3E+02 0.011 27.2 19.1 99 282-383 143-253 (445)
260 1wy6_A Hypothetical protein ST 37.1 1.9E+02 0.0064 24.5 8.5 62 206-275 92-153 (172)
261 3kae_A CDC27, possible protein 36.4 2.2E+02 0.0075 24.9 14.4 36 243-278 109-145 (242)
262 1ya0_A SMG-7 transcript varian 29.7 1.5E+02 0.0052 30.4 8.6 62 210-279 157-218 (497)
263 4fhn_B Nucleoporin NUP120; pro 28.0 2.5E+02 0.0084 32.1 10.9 98 239-336 834-962 (1139)
264 4b4t_S RPN3, 26S proteasome re 27.6 2.6E+02 0.0089 28.9 9.8 152 249-403 138-326 (523)
265 2ijq_A Hypothetical protein; s 23.5 3.4E+02 0.012 23.1 8.5 64 313-380 34-107 (161)
No 1
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=100.00 E-value=1.6e-31 Score=293.09 Aligned_cols=347 Identities=13% Similarity=0.108 Sum_probs=245.8
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhccc---chhhHHH-HhhhccCC
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKE---RDREEED-ERKDEGDR 106 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~---~e~Ar~~-eral~~~~ 106 (521)
..++|..+|.+ ..|.+ .++...|++..+|.+|+ .|.. |.+.|+ ++.++.+ +|+| ..
T Consensus 55 lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal--~~ 132 (679)
T 4e6h_A 55 LNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL--SK 132 (679)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT--CS
T ss_pred HHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH--Hh
Confidence 45778889999 99999 77778899999999999 5765 778888 9999999 9999 88
Q ss_pred C---CChhhHHHHHHHHHHcCCh--------hHHHHHHHHHHHhcCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHH
Q psy8681 107 D---SDTTYGMRELVFEEQNGFV--------SGARKVYERAVEFFGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI 174 (521)
Q Consensus 107 ~---P~~~~W~~~a~~e~~~g~~--------~~Ar~vye~Al~~~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~ 174 (521)
+ |++.+|..|+.+..+.++. +.++.+|++|+..+|. ++.+..+|..|+.|+..... .. -+
T Consensus 133 ~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~-~~----~~--- 204 (679)
T 4e6h_A 133 ELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKP-VN----KF--- 204 (679)
T ss_dssp SSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCC-CS----HH---
T ss_pred cCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccc-cC----cH---
Confidence 8 8999999999999887654 4567999999999987 77788999999999864320 00 00
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh---------------------------------
Q psy8681 175 VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR--------------------------------- 221 (521)
Q Consensus 175 l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~--------------------------------- 221 (521)
...++++++|.+|+++|. .|......+|..|..|++..+..
T Consensus 205 -----eeq~~~~~~R~iy~raL~-iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~ 278 (679)
T 4e6h_A 205 -----EEQQRVQYIRKLYKTLLC-QPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRN 278 (679)
T ss_dssp -----HHHHHHHHHHHHHHHHTT-SCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC
T ss_pred -----HHHhHHHHHHHHHHHHHh-CccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhc
Confidence 000144555555555553 34433334455554444432210
Q ss_pred --------------------------------------hhHHHHHHhhH-HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 222 --------------------------------------AGIEDVIVSKR-KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 222 --------------------------------------~~a~~~i~~kr-r~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..+.+.+..+| +..|++||..+|.++++|+.|+.++...|+
T Consensus 279 ~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~ 358 (679)
T 4e6h_A 279 LPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNT 358 (679)
T ss_dssp CCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSC
T ss_pred cccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCc
Confidence 00000011122 467999999999999999999999999999
Q ss_pred HHHHH-HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC-----------CCC---------CcHHHHH
Q psy8681 263 ADLIR-ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP-----------RLD---------MPELVWK 316 (521)
Q Consensus 263 ~~~Ar-~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~-----------~~~---------~~~~lw~ 316 (521)
.+.|+ .+|++|+..+|.+. |+.++...|++++|+.+|++++... |.. ....+|.
T Consensus 359 ~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 359 DSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp CTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 88896 99999999999876 7888888899999999999888631 110 0235788
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhc------------------------------------CC-CHHHHHHHHHHHHHcC
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLER------------------------------------TV-HVKVWMNYAQFEMSSG 359 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~------------------------------------~~-~~~vwi~ya~~e~~~g 359 (521)
.|+.|+.+.|+.+.||.+|.+|++. +| ++.+|+.|+.|+...|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 8888877666655555555555543 33 3444555555555555
Q ss_pred CchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchh
Q psy8681 360 DEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRR 417 (521)
Q Consensus 360 ~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~ 417 (521)
+ .++||++|++|+..+|+. +.+..||..|..||..+|+.+++.+|.+++...
T Consensus 519 ~---~~~AR~lferal~~~~~~---~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~ 570 (679)
T 4e6h_A 519 E---ESQVKSLFESSIDKISDS---HLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570 (679)
T ss_dssp C---HHHHHHHHHHHTTTSSST---THHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred C---HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4 666666666666655531 246789999999999999999999999888533
No 2
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.98 E-value=3.7e-30 Score=276.51 Aligned_cols=356 Identities=19% Similarity=0.258 Sum_probs=250.2
Q ss_pred CCchhhhhhH-HHHHH-HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCCChh
Q psy8681 50 KPNLKLLEKA-KAWKK-AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDSDTT 111 (521)
Q Consensus 50 ~rai~~lP~~-~~W~~-~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P~~~ 111 (521)
.++|...|.. .+|.. --+...|+++.|+.+|+ .|.+ +.+.|+++.|+.+ +|+| ..+|++.
T Consensus 3 e~al~~~P~~~~~w~~l~~~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral--~~~p~~~ 80 (530)
T 2ooe_A 3 EKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCL--MKVLHID 80 (530)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHT--TTCCCHH
T ss_pred hhHhhhCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--hcCCChH
Confidence 3567889999 99998 22366899999999998 5876 7788999999999 9999 9999999
Q ss_pred hHHHHHHHHH-HcCChhHHHH----HHHHHHHhcCCccccHHHHHHHHHHHHh---------hhh------hccccc---
Q psy8681 112 YGMRELVFEE-QNGFVSGARK----VYERAVEFFGEENLDEKLFIAFAKFEEG---------QRE------KYGDRA--- 168 (521)
Q Consensus 112 ~W~~~a~~e~-~~g~~~~Ar~----vye~Al~~~~~~~~~~~lw~~~a~~e~~---------~~~------~~~~~~--- 168 (521)
+|..|+.+.. ..|+++.|+. +|++++...|.++.+..+|..|+.|+.. .+. .|.+..
T Consensus 81 lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P 160 (530)
T 2ooe_A 81 LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNP 160 (530)
T ss_dssp HHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhch
Confidence 9999998765 5688877665 9999999888777789999999999875 330 111111
Q ss_pred -----hhhHHHHHh--hh----------hhhhhHHHHHHHHHH------HHhc----CChh------hHHHHHHHHHHHH
Q psy8681 169 -----GIEDVIVSK--RK----------FQYEEHERARVIYKY------ALDH----IPKD------RTAEIYKAYTIHE 215 (521)
Q Consensus 169 -----~~~~~~l~~--~~----------~~~~~~e~Ar~iy~~------aL~~----~P~~------~~~~l~~~~~~~e 215 (521)
.+|..|..- .. ...+.+..|+.+|.. +++. .|.. ....+|..|+.++
T Consensus 161 ~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e 240 (530)
T 2ooe_A 161 MINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWE 240 (530)
T ss_dssp CTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 111111110 00 012345556666554 4432 1211 1235667777666
Q ss_pred HHcCC-hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-cCCc
Q psy8681 216 KKYGD-RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED-------EGNAD-------LIRETYERAIA-NIPP 279 (521)
Q Consensus 216 ~~~G~-~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~-------~g~~~-------~Ar~~~erAl~-~~P~ 279 (521)
+..+. .+... ....+....|++++..+|.++++|+.|+.++.. .|+++ +|+.+|++|+. .+|.
T Consensus 241 ~~~~~~~~~~~-~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~ 319 (530)
T 2ooe_A 241 KSNPLRTEDQT-LITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK 319 (530)
T ss_dssp HHCSSCCSCSH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred HcCCccCCcch-hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence 65321 00000 000011235888888888888888888888876 57766 78888888887 6776
Q ss_pred hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh------------------------------
Q psy8681 280 TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG------------------------------ 324 (521)
Q Consensus 280 ~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~------------------------------ 324 (521)
+. |+.++...|++++|+.+|++++..+|.+ +..+|..|+.++.+
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccC-chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 55 6777778888888888888888765543 23577777766544
Q ss_pred -----cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHH
Q psy8681 325 -----QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398 (521)
Q Consensus 325 -----~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE 398 (521)
.|+++.|+.+|+++++.+| ++.+|+.|+.++...|+ +++||.+|++|+...|.++. ....+|..|+.||
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~---~~~Ar~~~~~al~~~~~~~~--~~~~lw~~~~~~e 473 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNE---DNNTRVLFERVLTSGSLPPE--KSGEIWARFLAFE 473 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTC---HHHHHHHHHHHHHSCCSCGG--GCHHHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCC---HhhHHHHHHHHHhccCCCHH--HHHHHHHHHHHHH
Confidence 4566667777777777666 58889999999888888 99999999999988765432 3457999999999
Q ss_pred HHcCCHHHHHHHHhhC
Q psy8681 399 AQHGDDESRAKLNSKL 414 (521)
Q Consensus 399 ~~~G~~~~~~~v~~~~ 414 (521)
..+|+.+++..+..++
T Consensus 474 ~~~G~~~~~~~~~~r~ 489 (530)
T 2ooe_A 474 SNIGDLASILKVEKRR 489 (530)
T ss_dssp HHSSCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 9999999998887766
No 3
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.97 E-value=2.5e-29 Score=267.65 Aligned_cols=327 Identities=15% Similarity=0.051 Sum_probs=227.9
Q ss_pred HHHhcCC-hhhhhhhcC-----CCcHHHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCC-hhHHHHHHHHHH
Q psy8681 66 MEEKQGN-KIGEEGANK-----ENEEEERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGF-VSGARKVYERAV 137 (521)
Q Consensus 66 ~e~~~gn-~~~Ar~ife-----~P~~e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~-~~~Ar~vye~Al 137 (521)
+|+..|+ ++.||.+|+ -|. |+++.|+.+ +|+| ..+|++++|..|+.++.+.++ .+.++.+|++|+
T Consensus 3 ~e~~~~~~i~~aR~vyer~l~~~P~-----~~~e~~~~iferal--~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al 75 (493)
T 2uy1_A 3 AEEKMGVELSSPSAIMEHARRLYMS-----KDYRSLESLFGRCL--KKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTL 75 (493)
T ss_dssp ---------CCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHS--TTCCCHHHHHHHHHHHHHHC----CTHHHHHHHH
T ss_pred hHHHcCcchHHHHHHHHHHHHHCCC-----CCHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 6788894 999999998 354 889999999 9999 999999999999999999874 578999999999
Q ss_pred HhcCCccccHHHHHHHHHHHHh----hh------hhccccc--------hhhHHHHHhh----------hh--hhhhHHH
Q psy8681 138 EFFGEENLDEKLFIAFAKFEEG----QR------EKYGDRA--------GIEDVIVSKR----------KF--QYEEHER 187 (521)
Q Consensus 138 ~~~~~~~~~~~lw~~~a~~e~~----~~------~~~~~~~--------~~~~~~l~~~----------~~--~~~~~e~ 187 (521)
..+|.++.++.+|..|+.|+.. ++ ..|.++. .+|..|..-. .. ....+..
T Consensus 76 ~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ 155 (493)
T 2uy1_A 76 GQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQS 155 (493)
T ss_dssp HHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHH
Confidence 9988777789999999999652 23 0111111 1122121100 00 0122334
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCC-hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD-RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI 266 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~-~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A 266 (521)
||.+|+.+....|.. +..+|..|+.||+.++. .... ....+.+..|+++|..+|.++.+|+.|+.++...|+++.|
T Consensus 156 ar~~y~~~~~~~~~~-s~~~W~~y~~~E~~~~~~~~~~--~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~a 232 (493)
T 2uy1_A 156 SFQRYQQIQPLIRGW-SVKNAARLIDLEMENGMKLGGR--PHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKA 232 (493)
T ss_dssp HHHHHHHHHHHHHTC-SHHHHHHHHHHHHTCTTCCCHH--HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhc-cHHHHHHHHHHHhcCCccCcch--hhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 444444444332220 11356666666654321 1100 0001124579999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCchh---------------------------------------------HHHHHHHcCCHHHHHHHHHH
Q psy8681 267 RETYERAIANIPPTK---------------------------------------------FAELESLLGDMERARAIYEL 301 (521)
Q Consensus 267 r~~~erAl~~~P~~~---------------------------------------------~a~le~~~g~~e~Ar~ife~ 301 (521)
+.+|++|+.. |.+. |+.++...|+.++||.+|++
T Consensus 233 r~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~ 311 (493)
T 2uy1_A 233 KKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIE 311 (493)
T ss_dssp HHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999 8764 23334456778889999998
Q ss_pred HHcCCCCCCcHHHHHHHHHHHHhcC-ChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 302 AISQPRLDMPELVWKAYIDFEVGQG-ERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 302 al~~~~~~~~~~lw~~yi~~e~~~g-~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
| ..++. ...+|..++.++...| +.+.||.+|+++++.+| .+.+|+.|+.|+...|+ .++||.+|+++.
T Consensus 312 A-~~~~~--~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~---~~~aR~l~er~~---- 381 (493)
T 2uy1_A 312 L-GNEGV--GPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGD---EENARALFKRLE---- 381 (493)
T ss_dssp H-TTSCC--CHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHSC----
T ss_pred h-hCCCC--ChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHH----
Confidence 8 54432 4568888888887776 58889999999988876 47788888888888887 888999998882
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhh
Q psy8681 380 ASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 380 ~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~ 419 (521)
. ...+|..|.+||..+||.++++++..+.-..++
T Consensus 382 k------~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 382 K------TSRMWDSMIEYEFMVGSMELFRELVDQKMDAIK 415 (493)
T ss_dssp C------BHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhc
Confidence 2 257999999999999999999997766644443
No 4
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.93 E-value=1.5e-24 Score=232.73 Aligned_cols=319 Identities=18% Similarity=0.198 Sum_probs=252.7
Q ss_pred ccCCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHH----H-Hhhhc
Q psy8681 47 EAAKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEE----D-ERKDE 103 (521)
Q Consensus 47 ~~~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~----~-eral~ 103 (521)
.++.+++..+|.. .+|+. .++...|+++.|+.+|+ .|+. ....|+++.|+. + ++++.
T Consensus 33 ~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~ 112 (530)
T 2ooe_A 33 KTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALD 112 (530)
T ss_dssp HHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence 4577899999999 99999 88889999999999999 5864 224678888776 6 67651
Q ss_pred c-CCCC-ChhhHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh-----------
Q psy8681 104 G-DRDS-DTTYGMRELVFEEQ---------NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR----------- 161 (521)
Q Consensus 104 ~-~~~P-~~~~W~~~a~~e~~---------~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~----------- 161 (521)
. ..+| +..+|..|+.++.. .|+++.|+.+|++++. .|. .....+|..|+.|+...+
T Consensus 113 ~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~-~P~-~~~~~~~~~~~~~e~~~~~~~~~~~l~~~ 190 (530)
T 2ooe_A 113 KIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV-NPM-INIEQLWRDYNKYEEGINIHLAKKMIEDR 190 (530)
T ss_dssp HTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT-SCC-TTHHHHHHHHHHHHHHHCHHHHHHHHHTT
T ss_pred HCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh-chh-hhHHHHHHHHHHHHHhhchhHHHHHHHHh
Confidence 0 2356 78999999999987 6889999999999998 453 223577777777653221
Q ss_pred ------h------------hccc-------c--------chhhHHHH---------------------------------
Q psy8681 162 ------E------------KYGD-------R--------AGIEDVIV--------------------------------- 175 (521)
Q Consensus 162 ------~------------~~~~-------~--------~~~~~~~l--------------------------------- 175 (521)
+ .+.. . ..+|..|+
T Consensus 191 ~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~ 270 (530)
T 2ooe_A 191 SRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGH 270 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCC
Confidence 0 0100 0 01222111
Q ss_pred ------Hh--hhhh-------hhhHH-------HHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 176 ------SK--RKFQ-------YEEHE-------RARVIYKYALD-HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 176 ------~~--~~~~-------~~~~e-------~Ar~iy~~aL~-~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
.. .+.. .|+++ .|+.+|++|+. .+|.+. .+|..|+.++...|+.+.+..+
T Consensus 271 ~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~--~l~~~~~~~~~~~g~~~~A~~~----- 343 (530)
T 2ooe_A 271 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSI----- 343 (530)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH--HHHHHHHHHHHHTTCHHHHHHH-----
T ss_pred CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHhcCCHHHHHHH-----
Confidence 00 0111 34544 89999999998 789876 8999999999999999999877
Q ss_pred HHHHHHHHhhCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHH-HHcCCHHHHHHHHHHHHcC
Q psy8681 233 KFQYEEEVNSNPNNY-DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELE-SLLGDMERARAIYELAISQ 305 (521)
Q Consensus 233 r~~ye~al~~~P~~~-~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le-~~~g~~e~Ar~ife~al~~ 305 (521)
|++++..+|.++ .+|..|+.++.+.|+.+.|+.+|++|+...|... .+.++ ...|++++|+.+|++++..
T Consensus 344 ---~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 ---YNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp ---HHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred ---HHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 999999999986 6999999999999999999999999999877643 23343 2589999999999999997
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.|. ...+|..|++++...|++++|+.+|++++..+| ...+|..|+.|+...|+ .+.+..++.++++.+|+
T Consensus 421 ~p~--~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~---~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 421 YGD--IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFRE 495 (530)
T ss_dssp HTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSC---HHHHHHHHHHHHHHTHH
T ss_pred CCC--CHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCch
Confidence 664 368999999999999999999999999999764 24599999999999998 99999999999999996
Q ss_pred ch
Q psy8681 381 SS 382 (521)
Q Consensus 381 ~~ 382 (521)
+.
T Consensus 496 ~~ 497 (530)
T 2ooe_A 496 EY 497 (530)
T ss_dssp HH
T ss_pred hc
Confidence 43
No 5
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.93 E-value=3.7e-24 Score=234.65 Aligned_cols=320 Identities=14% Similarity=0.112 Sum_probs=235.0
Q ss_pred CccCCCchhhhhhH-HHHHH--HHHHhcCC---hhhhhhhcC-----C---CcH---------HHhcccc--------hh
Q psy8681 46 DEAAKPNLKLLEKA-KAWKK--AMEEKQGN---KIGEEGANK-----E---NEE---------EERDKER--------DR 94 (521)
Q Consensus 46 ~~~~~rai~~lP~~-~~W~~--~~e~~~gn---~~~Ar~ife-----~---P~~---------e~r~g~~--------e~ 94 (521)
|.++.+++..+|.. ++|++ .+|...|+ ++.++.+|+ . |+. ..+.++. +.
T Consensus 86 R~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~ 165 (679)
T 4e6h_A 86 YETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNI 165 (679)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHH
Confidence 35578999999999 99999 88899999 999999999 4 443 2234443 34
Q ss_pred hHHH-Hhhhcc-CC-CC-ChhhHHHHHHHHHH---------cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 95 EEED-ERKDEG-DR-DS-DTTYGMRELVFEEQ---------NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 95 Ar~~-eral~~-~~-~P-~~~~W~~~a~~e~~---------~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
++.+ ++++.. .. +| +..+|..|+.|+.. .+.++.+|.+|.++|. +|.. ....+|..|..|+...+
T Consensus 166 vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~-iP~~-~~~~~w~~Y~~fe~~~~ 243 (679)
T 4e6h_A 166 VIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLC-QPMD-CLESMWQRYTQWEQDVN 243 (679)
T ss_dssp HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTT-SCCS-SHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHh-CccH-HHHHHHHHHHHHHHhcC
Confidence 5578 887721 23 67 78899999999874 3357899999999996 4532 34789999999887632
Q ss_pred h------------h---------------------cccc-------------------chhhHHHHHhhhhhh------h
Q psy8681 162 E------------K---------------------YGDR-------------------AGIEDVIVSKRKFQY------E 183 (521)
Q Consensus 162 ~------------~---------------------~~~~-------------------~~~~~~~l~~~~~~~------~ 183 (521)
. . ++.. ..+|..|+.-..... .
T Consensus 244 ~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~ 323 (679)
T 4e6h_A 244 QLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDL 323 (679)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHH
T ss_pred cchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchh
Confidence 0 0 1110 123444432111100 1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH-HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE-DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~-~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
...+++.+|++||..+|... .+|..|+.|+...|+.+.+. .+ |++|+..+|.+..+|+.|+.+++..|+
T Consensus 324 ~~~Rv~~~Ye~aL~~~p~~~--~lW~~ya~~~~~~~~~~~a~r~i--------l~rAi~~~P~s~~Lwl~~a~~ee~~~~ 393 (679)
T 4e6h_A 324 HKARMTYVYMQAAQHVCFAP--EIWFNMANYQGEKNTDSTVITKY--------LKLGQQCIPNSAVLAFSLSEQYELNTK 393 (679)
T ss_dssp HHHHHHHHHHHHHHHTTTCH--HHHHHHHHHHHHHSCCTTHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHcCCCH--HHHHHHHHHHHhcCcHHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhCC
Confidence 34567889999999999876 89999999999999887774 55 888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHcC-----------Cc-----------hh-----HHHHHHHcCCH-----------------------
Q psy8681 263 ADLIRETYERAIANI-----------PP-----------TK-----FAELESLLGDM----------------------- 292 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~-----------P~-----------~~-----~a~le~~~g~~----------------------- 292 (521)
+++|+.+|++++... |. .. |+.++...|+.
T Consensus 394 ~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi 473 (679)
T 4e6h_A 394 IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYL 473 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHH
Confidence 888888888887642 42 11 34444444444
Q ss_pred -------------HHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CHHHHHHHHHHH
Q psy8681 293 -------------ERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV----HVKVWMNYAQFE 355 (521)
Q Consensus 293 -------------e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e 355 (521)
++|+.+|+.+++..|. ...+|..|++|+...|+.+.||.+|++++..++ ...+|..|+.||
T Consensus 474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE 551 (679)
T 4e6h_A 474 ENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFE 551 (679)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 5555555555543332 357999999999999999999999999999876 468999999999
Q ss_pred HHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 356 MSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 356 ~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
...|+ .+.+++++.|+.+.+|+++
T Consensus 552 ~~~G~---~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 552 SKVGS---LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp HHTCC---SHHHHHHHHHHHHHSTTCC
T ss_pred HHcCC---HHHHHHHHHHHHHhCCCCc
Confidence 99999 9999999999999999864
No 6
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.92 E-value=3.2e-25 Score=235.98 Aligned_cols=297 Identities=16% Similarity=0.167 Sum_probs=207.3
Q ss_pred hhHHH-Hhhhcc-CCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh------
Q psy8681 94 REEED-ERKDEG-DRDS-DTTYGMRELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ------ 160 (521)
Q Consensus 94 ~Ar~~-eral~~-~~~P-~~~~W~~~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~------ 160 (521)
..+.+ ++++.. ..+| +..+|..|+.|+.. .|+++.+|.+|++||.. |. .....+|..|..|+...
T Consensus 66 ~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~ 143 (493)
T 2uy1_A 66 KLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGK 143 (493)
T ss_dssp CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHH
Confidence 34444 555510 1234 56677777776542 34566677777777763 42 12356666666655320
Q ss_pred -------h------hhc-------cc-cchhhHHHHHhhhh---h---hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q psy8681 161 -------R------EKY-------GD-RAGIEDVIVSKRKF---Q---YEEHERARVIYKYALDHIPKDRTAEIYKAYTI 213 (521)
Q Consensus 161 -------~------~~~-------~~-~~~~~~~~l~~~~~---~---~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~ 213 (521)
+ ..| ++ ...+|..|+.-... + .+..++++.+|++||..+|... .+|..|+.
T Consensus 144 ~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~--~lW~~ya~ 221 (493)
T 2uy1_A 144 KIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAE--EVYFFYSE 221 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCH--HHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCH--HHHHHHHH
Confidence 0 000 00 11234444332110 0 0125677889999999988875 89999999
Q ss_pred HHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH----------------------------------------
Q psy8681 214 HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY---------------------------------------- 253 (521)
Q Consensus 214 ~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y---------------------------------------- 253 (521)
|+...|+.+.+..+ |++++.. |.+..+|+.|
T Consensus 222 ~~~~~~~~~~ar~i--------~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 222 YLIGIGQKEKAKKV--------VERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHTTCHHHHHHH--------HHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHH--------HHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 99999998888766 8888888 8776555544
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCchh------HHHHHHHcC-CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 254 LRLLEDEGNADLIRETYERAIANIPPTK------FAELESLLG-DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 254 ~~~~~~~g~~~~Ar~~~erAl~~~P~~~------~a~le~~~g-~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
+.++.+.++++.||.+|++| ..|... +|.+|...| +.++||.+|+.++...|. ...+|..|++|+...|
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A--~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~--~~~~~~~yid~e~~~~ 368 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL--GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD--STLLKEEFFLFLLRIG 368 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH--TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHh--hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHcC
Confidence 44444567799999999999 344322 578888776 699999999999996553 3568999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHH
Q psy8681 327 ERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES 406 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~ 406 (521)
+.+.||.+|+++ ..+..+|..|+.||...|+ .+.+|++|++++..+..+. ++++..++++|..||+.+|+.++
T Consensus 369 ~~~~aR~l~er~---~k~~~lw~~~~~fE~~~G~---~~~~r~v~~~~~~~~~~~~-~~~~~~~~~~~~~fe~~~g~l~~ 441 (493)
T 2uy1_A 369 DEENARALFKRL---EKTSRMWDSMIEYEFMVGS---MELFRELVDQKMDAIKADA-ILPPLPPREHNVQMEGILGRYHC 441 (493)
T ss_dssp CHHHHHHHHHHS---CCBHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHHHTTC-CBCCCCCC--CCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHH---HHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHhcccc-cCCcccccccHHHHHHHhhhHHH
Confidence 999999999998 3479999999999999999 9999999999999876432 33456789999999999998877
Q ss_pred HHHHHhhC
Q psy8681 407 RAKLNSKL 414 (521)
Q Consensus 407 ~~~v~~~~ 414 (521)
+-.-.+.|
T Consensus 442 ~~~~~~~~ 449 (493)
T 2uy1_A 442 FLDSFNFL 449 (493)
T ss_dssp HHHHHCBT
T ss_pred HHHHhhhh
Confidence 65555444
No 7
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=1.2e-22 Score=208.08 Aligned_cols=314 Identities=13% Similarity=0.051 Sum_probs=228.5
Q ss_pred hhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-Chhh
Q psy8681 53 LKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTY 112 (521)
Q Consensus 53 i~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~ 112 (521)
+...|.. ..|.. .++...|+++.|...++ .|.+ +.+.|+++.|+.. ++++ ...| ++..
T Consensus 26 ~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al--~~~p~~~~~ 103 (388)
T 1w3b_A 26 WRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHAL--RLKPDFIDG 103 (388)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH--HcCcchHHH
Confidence 3445555 55544 55555666666666555 3433 4455666666666 6666 6666 4556
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
|..++..+...|+++.|...|++++...| ....+|..++.+....| +++.|..+|
T Consensus 104 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~ 158 (388)
T 1w3b_A 104 YINLAAALVAAGDMEGAVQAYVSALQYNP---DLYCVRSDLGNLLKALG----------------------RLEEAKACY 158 (388)
T ss_dssp HHHHHHHHHHHSCSSHHHHHHHHHHHHCT---TCTHHHHHHHHHHHTTS----------------------CHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcc----------------------CHHHHHHHH
Confidence 66666666666666666666666666543 23455555665555555 888888888
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8681 193 KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYER 272 (521)
Q Consensus 193 ~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~er 272 (521)
++++...|... ..|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...|++
T Consensus 159 ~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 159 LKAIETQPNFA--VAWSNLGCVFNAQGEIWLAIHH--------FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHCTTCH--HHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888766 6788888888888888888766 8888888898888888888888888888899999999
Q ss_pred HHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHH
Q psy8681 273 AIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVK 346 (521)
Q Consensus 273 Al~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~ 346 (521)
++...|.+. ++.++...|+++.|...|++++...|. ...+|..++..+...|+++.|..+|++++...| ++.
T Consensus 229 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 306 (388)
T 1w3b_A 229 ALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS--CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH
Confidence 888888755 566677888999999999998886554 356788888888888999999999999988876 678
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+|..++..+...|+ ++.|...|++++...|.+. ..+......-...|+.+.+....+++
T Consensus 307 ~~~~l~~~~~~~g~---~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~a 365 (388)
T 1w3b_A 307 SLNNLANIKREQGN---IEEAVRLYRKALEVFPEFA------AAHSNLASVLQQQGKLQEALMHYKEA 365 (388)
T ss_dssp HHHHHHHHHHTTTC---HHHHHHHHHHHTTSCTTCH------HHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCcH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88888888888887 8889999999888877653 23334444444678877776666554
No 8
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.92 E-value=2e-22 Score=206.44 Aligned_cols=292 Identities=14% Similarity=0.047 Sum_probs=265.8
Q ss_pred CCCchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-
Q psy8681 49 AKPNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS- 108 (521)
Q Consensus 49 ~~rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P- 108 (521)
..+++...|.. ..|+. .++...|+++.|...|+ .|++ ..+.|+++.|... ++++ ..+|
T Consensus 56 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~ 133 (388)
T 1w3b_A 56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL--QYNPD 133 (388)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH--HHCTT
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HhCCC
Confidence 44667788988 89988 88889999999999998 6765 7788999999999 9999 9999
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|..++.++...|++++|..+|++++...| .....|..++......| +++.|
T Consensus 134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g----------------------~~~~A 188 (388)
T 1w3b_A 134 LYCVRSDLGNLLKALGRLEEAKACYLKAIETQP---NFAVAWSNLGCVFNAQG----------------------EIWLA 188 (388)
T ss_dssp CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTTT----------------------CHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 689999999999999999999999999999865 46789999999888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...|++++...|... ..|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|..
T Consensus 189 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 258 (388)
T 1w3b_A 189 IHHFEKAVTLDPNFL--DAYINLGNVLKEARIFDRAVAA--------YLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258 (388)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCTTHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCCcH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999876 7888999999999999999877 999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|... ++.+....|+++.|...|++++...|. ...+|...+.++...|+++.|..+|++++...|
T Consensus 259 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 336 (388)
T 1w3b_A 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--HADSLNNLANIKREQGNIEEAVRLYRKALEVFP 336 (388)
T ss_dssp HHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 9999999999765 577788999999999999999996654 367899999999999999999999999999987
Q ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 344 -HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 344 -~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.+|..++..+...|+ ++.|...|++++...|...
T Consensus 337 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 373 (388)
T 1w3b_A 337 EFAAAHSNLASVLQQQGK---LQEALMHYKEAIRISPTFA 373 (388)
T ss_dssp TCHHHHHHHHHHHHTTTC---CHHHHHHHHHHHTTCTTCH
T ss_pred CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCH
Confidence 68899999999999998 9999999999999888764
No 9
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.92 E-value=7.8e-23 Score=203.96 Aligned_cols=248 Identities=18% Similarity=0.231 Sum_probs=206.7
Q ss_pred ChhhHHHHHHHHHHc----CCh----hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhh
Q psy8681 109 DTTYGMRELVFEEQN----GFV----SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKF 180 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~----g~~----~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~ 180 (521)
+..+|..|+.++.+. ++. ++|..+|++|+...| .++.+|..++.++...+..... ++....
T Consensus 7 ~~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p---~~~~~w~~~~~~~~~~~~~l~~--------~g~~~~ 75 (308)
T 2ond_A 7 QVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAE--------KGDMNN 75 (308)
T ss_dssp HHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHH--------TSCCHH
T ss_pred HHHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhchhhhh--------ccchhh
Confidence 468999999999885 233 689999999999966 4789999999988644200000 000000
Q ss_pred hhhhHHHHHHHHHHHHh-cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH-HHHHHHHHHH
Q psy8681 181 QYEEHERARVIYKYALD-HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD-AWFDYLRLLE 258 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~-~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~-~W~~y~~~~~ 258 (521)
..+.+++|+.+|++|+. ..|.+. .+|..|+.++...|+.+.+..+ |++++..+|.++. +|..|+.++.
T Consensus 76 ~~~~~~~A~~~~~rAl~~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 76 AKLFSDEAANIYERAISTLLKKNM--LLYFAYADYEESRMKYEKVHSI--------YNRLLAIEDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHhccccCccHHHHHHHHHHH
Confidence 01135899999999999 578776 8999999999999999999877 9999999999987 9999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHH-cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----FAELESL-LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVR 332 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~-~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar 332 (521)
..|++++|+.+|++|+...|... ++.++.. .|+++.|+.+|++++...|. ...+|..|+.++...|+++.|+
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~~~~~~~~~~~g~~~~A~ 223 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD--IPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHTTCCHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999988754 3444443 69999999999999996654 4689999999999999999999
Q ss_pred HHHHHHHhc---CC--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 333 ELHERLLER---TV--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 333 ~l~eral~~---~~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.+|++++.. .| +..+|..++.|+...|+ .+.|+.++.+|+..+|++.
T Consensus 224 ~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~---~~~a~~~~~~a~~~~p~~~ 275 (308)
T 2ond_A 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGD---LASILKVEKRRFTAFREEY 275 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC---HHHHHHHHHHHHHHTTTTT
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHccccc
Confidence 999999996 33 57899999999999998 9999999999999999864
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=4.3e-21 Score=199.76 Aligned_cols=304 Identities=11% Similarity=-0.006 Sum_probs=257.0
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-Ch
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DT 110 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~ 110 (521)
..+...|.. ..|+. .++...|+++.|..+|+ .|++ +...|+++.|... ++++ ...| ++
T Consensus 17 ~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al--~~~p~~~ 94 (450)
T 2y4t_A 17 NLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI--QLKMDFT 94 (450)
T ss_dssp ------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCH
T ss_pred ccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH--hcCCCcH
Confidence 455667888 88888 78889999999999998 5764 7788999999999 9999 9999 78
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccH---HHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDE---KLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~---~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
..|..++.++...|+++.|..+|++++...|. +. .+|..++......+ ...++..+...++++.
T Consensus 95 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~ 161 (450)
T 2y4t_A 95 AARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS---ENEEKEAQSQLIKSDEMQR----------LRSQALNAFGSGDYTA 161 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC---HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ChhhHHHHHHHHHHHHHHH----------HHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999998653 44 67776655533222 0111222344569999
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
|..+|++++...|.+. .++..++......|+.+.+... |++++..+|.++.+|..++.++...|++++|.
T Consensus 162 A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 231 (450)
T 2y4t_A 162 AIAFLDKILEVCVWDA--ELRELRAECFIKEGEPRKAISD--------LKAASKLKNDNTEAFYKISTLYYQLGDHELSL 231 (450)
T ss_dssp HHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCGGGGHHH--------HHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCh--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999876 7888899999999999999877 99999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchh-----H------------HHHHHHcCCHHHHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHhcCCh
Q psy8681 268 ETYERAIANIPPTK-----F------------AELESLLGDMERARAIYELAISQPRLDMP--ELVWKAYIDFEVGQGER 328 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~------------a~le~~~g~~e~Ar~ife~al~~~~~~~~--~~lw~~yi~~e~~~g~~ 328 (521)
..|++++...|... + +......|+++.|..+|+.++...|.+.. ..+|...+.++...|++
T Consensus 232 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 232 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999999865 2 66778899999999999999996554322 34778888899999999
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 329 DKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 329 ~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+.|..+|++++...| ++.+|..++..+...|+ ++.|...|++++...|.++
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~ 363 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEM---YDEAIQDYETAQEHNENDQ 363 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSCH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCcchH
Confidence 999999999999987 68999999999999998 9999999999999999874
No 11
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.89 E-value=1.7e-21 Score=194.27 Aligned_cols=215 Identities=15% Similarity=0.239 Sum_probs=191.4
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHH-------cCCh-------hHHHHHHHHHHH-hcCCccccHHHHHHHHH
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQ-------NGFV-------SGARKVYERAVE-FFGEENLDEKLFIAFAK 155 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~-------~g~~-------~~Ar~vye~Al~-~~~~~~~~~~lw~~~a~ 155 (521)
++|+.+ ++++ ..+| ++.+|..++.++.. .|++ ++|+.+|++|+. ..| .+..+|..++.
T Consensus 33 ~~a~~~~~~al--~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p---~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCL--LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK---KNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT---TCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc---ccHHHHHHHHH
Confidence 567778 8999 9999 89999999999874 5886 899999999999 444 47889999999
Q ss_pred HHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHHcCChhhHHHHHHhhHHH
Q psy8681 156 FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE-IYKAYTIHEKKYGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 156 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~-l~~~~~~~e~~~G~~~~a~~~i~~krr~ 234 (521)
++...| +++.|+.+|++++...|.+. . +|..|+.++.+.|+.+.+..+
T Consensus 108 ~~~~~~----------------------~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~A~~~------- 156 (308)
T 2ond_A 108 YEESRM----------------------KYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMI------- 156 (308)
T ss_dssp HHHHTT----------------------CHHHHHHHHHHHHTSSSSCT--HHHHHHHHHHHHHHHCHHHHHHH-------
T ss_pred HHHhcC----------------------CHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHhcCHHHHHHH-------
Confidence 999998 99999999999999988765 4 899999999999999988877
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLED-EGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
|++++..+|.+..+|..++.+... .|+++.|+.+|++|+...|.+. |+.++..+|++++|+.+|++++..++.
T Consensus 157 -~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l 235 (308)
T 2ond_A 157 -FKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp -HHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred -HHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence 999999999999999988877654 6999999999999999999866 788899999999999999999996321
Q ss_pred --CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC
Q psy8681 309 --DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344 (521)
Q Consensus 309 --~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~ 344 (521)
+....+|..|+.++...|+++.|..++.++++.+|+
T Consensus 236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 125789999999999999999999999999999874
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=2.8e-20 Score=186.25 Aligned_cols=298 Identities=12% Similarity=0.013 Sum_probs=248.5
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHH
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFE 120 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e 120 (521)
..|+. ..+...|+++.|..+|+ .|++ +...|+++.|... ++++ ...| +...|..++.++
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI--ALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH--HhCCCcchHHHHHHHHH
Confidence 45555 67778999999999998 5764 7788999999999 9999 9999 789999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP 200 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P 200 (521)
...|+++.|..+|++++...|.......+|..++.+..... ...++..+...++++.|..+|++++...|
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 151 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQR----------LRSQALDAFDGADYTAAITFLDKILEVCV 151 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHH----------HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 99999999999999999985511135566666644332111 00111223344599999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 201 KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 201 ~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
.+. .+|..++......|+.+.+... |++++..+|.++.+|..++.++...|++++|...|++++...|..
T Consensus 152 ~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 221 (359)
T 3ieg_A 152 WDA--ELRELRAECFIKEGEPRKAISD--------LKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDH 221 (359)
T ss_dssp TCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred Cch--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccc
Confidence 876 7888899999999999999877 999999999999999999999999999999999999999999986
Q ss_pred h-----H------------HHHHHHcCCHHHHHHHHHHHHcCCCCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 281 K-----F------------AELESLLGDMERARAIYELAISQPRLDMP--ELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 281 ~-----~------------a~le~~~g~~e~Ar~ife~al~~~~~~~~--~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
. + +.+....|+++.|..+|++++...|.+.. ..+|..++..+...|+++.|..+|++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 5 1 55577899999999999999996554321 134556778888999999999999999999
Q ss_pred CC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 342 TV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 342 ~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.| ++.+|..++..+...|+ ++.|...|++|+...|++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~---~~~A~~~~~~a~~~~p~~~ 340 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEM---YDEAIQDYEAAQEHNENDQ 340 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTCTTCH
T ss_pred CcccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCCCh
Confidence 87 78999999999999998 9999999999999999874
No 13
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.89 E-value=2.7e-20 Score=201.15 Aligned_cols=310 Identities=10% Similarity=0.018 Sum_probs=266.0
Q ss_pred hhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH-------------------------------------------
Q psy8681 57 EKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE------------------------------------------- 85 (521)
Q Consensus 57 P~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~------------------------------------------- 85 (521)
|.. ..|+. ..+...|+++.|+.+|+ .|++
T Consensus 197 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 197 KLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 445 78887 88899999999999998 5653
Q ss_pred -----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh
Q psy8681 86 -----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG 159 (521)
Q Consensus 86 -----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~ 159 (521)
+.+.|+++.|+.+ ++++ ...+++.+|..++..+.+.|++++|..+|++++...|. +..+|..++.....
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSIN--GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY---NLDVYPLHLASLHE 351 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTST--TGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CCTTHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhh--cCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc---cHHHHHHHHHHHHH
Confidence 1256889999999 9998 76348999999999999999999999999999998653 45678888888888
Q ss_pred hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH
Q psy8681 160 QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a 239 (521)
.| +++.|..+|++++...|.+. .+|..++.+..+.|+.+.+..+ |+++
T Consensus 352 ~g----------------------~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~~ 399 (597)
T 2xpi_A 352 SG----------------------EKNKLYLISNDLVDRHPEKA--VTWLAVGIYYLCVNKISEARRY--------FSKS 399 (597)
T ss_dssp HT----------------------CHHHHHHHHHHHHHHCTTSH--HHHHHHHHHHHHTTCHHHHHHH--------HHHH
T ss_pred hC----------------------CHHHHHHHHHHHHhhCcccH--HHHHHHHHHHHHhccHHHHHHH--------HHHH
Confidence 87 99999999999999888876 7888899999999999999877 9999
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
+..+|.+..+|..++..+...|++++|..+|++++...|.+. ++.++...|+++.|..+|++++...|. ...+
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ 477 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY--DPLL 477 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--CHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChHH
Confidence 999999999999999999999999999999999999888654 567788899999999999999986554 3578
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhc------CCC--HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLER------TVH--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE 386 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~------~~~--~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~ 386 (521)
|..++..+...|++++|..+|++++.. .|. +.+|..++..+...|+ ++.|..+|++++...|.+.
T Consensus 478 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~p~~~---- 550 (597)
T 2xpi_A 478 LNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM---YDAAIDALNQGLLLSTNDA---- 550 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSSCCH----
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhCCCCh----
Confidence 999999999999999999999999987 454 7899999999999998 9999999999999988763
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 387 RVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 387 ~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..+..+...-...|+.+.+..+.+++
T Consensus 551 --~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 551 --NVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 35555555556889998887777655
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.86 E-value=1.1e-18 Score=174.55 Aligned_cols=281 Identities=10% Similarity=-0.033 Sum_probs=240.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
....|+++.|... ++++ ...| ++..|..++..+...|+++.|...|++++...| ....+|..++.+....|
T Consensus 13 ~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~-- 85 (359)
T 3ieg_A 13 LLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM---DFTAARLQRGHLLLKQG-- 85 (359)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT--
T ss_pred HHHcCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHHcC--
Confidence 4568999999999 9999 9999 799999999999999999999999999999865 46788999999988888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC---hhhHHHHHHHH------------HHHHHHcCChhhHHHHH
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP---KDRTAEIYKAY------------TIHEKKYGDRAGIEDVI 228 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P---~~~~~~l~~~~------------~~~e~~~G~~~~a~~~i 228 (521)
+++.|...|++++...| .+. ..|..+ +......|+.+.+...
T Consensus 86 --------------------~~~~A~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~- 142 (359)
T 3ieg_A 86 --------------------KLDEAEDDFKKVLKSNPSEQEEK--EAESQLVKADEMQRLRSQALDAFDGADYTAAITF- 142 (359)
T ss_dssp --------------------CHHHHHHHHHHHHTSCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH-
T ss_pred --------------------ChHHHHHHHHHHHhcCCcccChH--HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH-
Confidence 99999999999999999 665 455544 5667788999888877
Q ss_pred HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 229 ~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al 303 (521)
|++++..+|.++.+|..++.++...|++++|...|++++...|.+. ++.++...|+++.|...|++++
T Consensus 143 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 143 -------LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp -------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -------HHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998866 6778889999999999999999
Q ss_pred cCCCCCCcHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCC-H----HHHHHHHHHHHHcCCchhhHH
Q psy8681 304 SQPRLDMPELVWKAY------------IDFEVGQGERDKVRELHERLLERTVH-V----KVWMNYAQFEMSSGDEDSVSL 366 (521)
Q Consensus 304 ~~~~~~~~~~lw~~y------------i~~e~~~g~~~~Ar~l~eral~~~~~-~----~vwi~ya~~e~~~g~~~~~~~ 366 (521)
...|.. ...|..+ +..+...|+++.|..+|++++...|+ + .+|..++..+...|+ ++.
T Consensus 216 ~~~~~~--~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~ 290 (359)
T 3ieg_A 216 KLDQDH--KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEK---PVE 290 (359)
T ss_dssp HHCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTC---HHH
T ss_pred hhCccc--hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccC---HHH
Confidence 965543 3444433 55678899999999999999998874 3 345668888888888 999
Q ss_pred HHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 367 ARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 367 AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
|..+|++++...|.+. .++.....+-...|+.+.+.....++
T Consensus 291 A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~A~~~~~~a 332 (359)
T 3ieg_A 291 AIRICSEVLQMEPDNV------NALKDRAEAYLIEEMYDEAIQDYEAA 332 (359)
T ss_dssp HHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcccH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999988764 35555555666789999888887655
No 15
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.86 E-value=8e-20 Score=197.40 Aligned_cols=278 Identities=10% Similarity=-0.052 Sum_probs=249.8
Q ss_pred HHHHhcCChhhhhhhcC----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhH
Q psy8681 65 AMEEKQGNKIGEEGANK----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSG 128 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~ 128 (521)
.++...|+++.|+.+|+ .|.+ +.+.|+++.|..+ ++++ ...| +...|..++..+...|++++
T Consensus 280 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 280 NKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKIL--EIDPYNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp CTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH--HHCTTCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HcCcccHHHHHHHHHHHHHhCCHHH
Confidence 34456788999999998 2332 7889999999999 9999 8889 78999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHH
Q psy8681 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIY 208 (521)
Q Consensus 129 Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~ 208 (521)
|..+|++++...| .+..+|..++.+....| +++.|+.+|++++...|.+. ..|
T Consensus 358 A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~~~~~--~~~ 410 (597)
T 2xpi_A 358 LYLISNDLVDRHP---EKAVTWLAVGIYYLCVN----------------------KISEARRYFSKSSTMDPQFG--PAW 410 (597)
T ss_dssp HHHHHHHHHHHCT---TSHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHH
T ss_pred HHHHHHHHHhhCc---ccHHHHHHHHHHHHHhc----------------------cHHHHHHHHHHHHHhCCCCH--HHH
Confidence 9999999998754 46789999999998888 99999999999999999876 789
Q ss_pred HHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HH
Q psy8681 209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FA 283 (521)
Q Consensus 209 ~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a 283 (521)
..++....+.|+.+.+... |++++...|.+..+|..++..+...|++++|..+|++++...|.+. ++
T Consensus 411 ~~l~~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~ 482 (597)
T 2xpi_A 411 IGFAHSFAIEGEHDQAISA--------YTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHH--------HHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHH--------HHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 9999999999999999877 9999999999999999999999999999999999999999988765 57
Q ss_pred HHHHHcCCHHHHHHHHHHHHcCC---CCCCc--HHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q psy8681 284 ELESLLGDMERARAIYELAISQP---RLDMP--ELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMS 357 (521)
Q Consensus 284 ~le~~~g~~e~Ar~ife~al~~~---~~~~~--~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~ 357 (521)
.++...|+++.|..+|++++... +.++. ..+|..++..+...|+++.|..+|++++...| ++.+|..++..+..
T Consensus 483 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 483 VVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 77889999999999999998841 11222 67999999999999999999999999999987 78999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHhccch
Q psy8681 358 SGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 358 ~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.|+ ++.|..+|++++...|++.
T Consensus 563 ~g~---~~~A~~~~~~~l~~~p~~~ 584 (597)
T 2xpi_A 563 KKI---PGLAITHLHESLAISPNEI 584 (597)
T ss_dssp TTC---HHHHHHHHHHHHHHCTTCH
T ss_pred hCC---HHHHHHHHHHHHhcCCCCh
Confidence 998 9999999999999999874
No 16
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.85 E-value=1.7e-18 Score=180.09 Aligned_cols=283 Identities=11% Similarity=-0.025 Sum_probs=240.9
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
+.+.|+++.|+.+ ++++ ..+| ++..|..++..+...|+++.|..+|++++...| ....+|..++......|
T Consensus 36 ~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g-- 108 (450)
T 2y4t_A 36 LLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM---DFTAARLQRGHLLLKQG-- 108 (450)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CcHHHHHHHHHHHHHcC--
Confidence 6788999999999 9999 9899 799999999999999999999999999999865 46788999999998888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhH-HHHHHHH------------HHHHHHcCChhhHHHHHHh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEIYKAY------------TIHEKKYGDRAGIEDVIVS 230 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~-~~l~~~~------------~~~e~~~G~~~~a~~~i~~ 230 (521)
+++.|..+|++++...|.+.. ...|..+ +......|+.+.+...
T Consensus 109 --------------------~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~--- 165 (450)
T 2y4t_A 109 --------------------KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAF--- 165 (450)
T ss_dssp --------------------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH---
T ss_pred --------------------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 999999999999999987530 0233333 3446677888888876
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
|++++..+|.+..+|..++.++...|++++|..+|++++...|.+. ++.++...|+++.|...|++++..
T Consensus 166 -----~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 240 (450)
T 2y4t_A 166 -----LDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL 240 (450)
T ss_dssp -----HHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988765 577888999999999999999986
Q ss_pred CCCCCcHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCchhhHHHH
Q psy8681 306 PRLDMPELVWKAY------------IDFEVGQGERDKVRELHERLLERTVH-----VKVWMNYAQFEMSSGDEDSVSLAR 368 (521)
Q Consensus 306 ~~~~~~~~lw~~y------------i~~e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~ya~~e~~~g~~~~~~~AR 368 (521)
.|. ....|..+ +..+...|+++.|..+|++++...|. ..+|..++..+...|+ ++.|.
T Consensus 241 ~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~---~~~A~ 315 (450)
T 2y4t_A 241 DQD--HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEK---PVEAI 315 (450)
T ss_dssp CTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTC---HHHHH
T ss_pred CCC--hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCC---HHHHH
Confidence 554 34566555 77888999999999999999999875 4578888999999998 99999
Q ss_pred HHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 369 RVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 369 ~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..|++++...|.+. .+|......-...|+.+.+....+++
T Consensus 316 ~~~~~a~~~~p~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a 355 (450)
T 2y4t_A 316 RVCSEVLQMEPDNV------NALKDRAEAYLIEEMYDEAIQDYETA 355 (450)
T ss_dssp HHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccH------HHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999988764 35555555556889998887776655
No 17
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-19 Score=190.21 Aligned_cols=275 Identities=16% Similarity=0.137 Sum_probs=204.0
Q ss_pred cccchhhHHH-HhhhccC-----C--C-------C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHH
Q psy8681 89 DKERDREEED-ERKDEGD-----R--D-------S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIA 152 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~-----~--~-------P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~ 152 (521)
.|+++.|+.+ ++++ . . . | .+..|..++..+...|+++.|..+|++++...| . ..+|..
T Consensus 202 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~---~-~~~~~~ 275 (514)
T 2gw1_A 202 PESYDKADESFTKAA--RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP---R-VNSYIY 275 (514)
T ss_dssp TTHHHHHHHHHHHHH--HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC---C-HHHHHH
T ss_pred hccHHHHHHHHHHHH--HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc---c-HHHHHH
Confidence 4566666666 6666 4 2 2 3 245566666666666666666666666666643 2 555566
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
++......| +++.|...|++++...|.+. .+|..++.+....|+.+.+...
T Consensus 276 l~~~~~~~~----------------------~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~----- 326 (514)
T 2gw1_A 276 MALIMADRN----------------------DSTEYYNYFDKALKLDSNNS--SVYYHRGQMNFILQNYDQAGKD----- 326 (514)
T ss_dssp HHHHHHTSS----------------------CCTTGGGHHHHHHTTCTTCT--HHHHHHHHHHHHTTCTTHHHHH-----
T ss_pred HHHHHHHCC----------------------CHHHHHHHHHHHhhcCcCCH--HHHHHHHHHHHHhCCHHHHHHH-----
Confidence 666555555 88888888888888888776 6788888888888888888766
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
|++++..+|.+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|++++...|
T Consensus 327 ---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 327 ---FDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp ---HHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 8999999999889999999999889999999999999998887654 56778888999999999999887433
Q ss_pred CCCc----HHHHHHHHHHHHh---cCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 308 LDMP----ELVWKAYIDFEVG---QGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 308 ~~~~----~~lw~~yi~~e~~---~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.... ..+|...+..+.. .|+++.|...|++++...| ++.+|..++.++...|+ ++.|...|++++...|
T Consensus 404 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 404 KLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQED---IDEAITLFEESADLAR 480 (514)
T ss_dssp TSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCS
T ss_pred ccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHhcc
Confidence 2211 3477888888888 8999999999999998886 68888999999998888 9999999999999988
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCH
Q psy8681 380 ASSEKEERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 380 ~~~~~~~~~~l~~~~~~fE~~~G~~ 404 (521)
.++.......+..+...+....+++
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (514)
T 2gw1_A 481 TMEEKLQAITFAEAAKVQQRIRSDP 505 (514)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred ccHHHHHHHHHHHHHHHHHHhhCCH
Confidence 8754333333344443334444443
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=3.9e-19 Score=176.23 Aligned_cols=274 Identities=11% Similarity=-0.001 Sum_probs=222.0
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
..|+++.|..+ ++++ ...| +...+..++..+...|+++.|..+|++++...| .++.+|..++......|
T Consensus 34 ~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~---- 104 (330)
T 3hym_B 34 YNCDFKMCYKLTSVVM--EKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP---SNPVSWFAVGCYYLMVG---- 104 (330)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSTHHHHHHHHHHHHSC----
T ss_pred HcCCHHHHHHHHHHHH--HcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHhh----
Confidence 34556666666 6888 8888 688888888999999999999999999999855 35677888877766554
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
..++.|...|++++...|... ..|..++......|+.+.+... |++++..+|.
T Consensus 105 -----------------~~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~~~ 157 (330)
T 3hym_B 105 -----------------HKNEHARRYLSKATTLEKTYG--PAWIAYGHSFAVESEHDQAMAA--------YFTAAQLMKG 157 (330)
T ss_dssp -----------------SCHHHHHHHHHHHHTTCTTCT--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHTTT
T ss_pred -----------------hhHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhccc
Confidence 168889999999999988876 7788888888888999888877 9999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC-------CCCcHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPR-------LDMPEL 313 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~-------~~~~~~ 313 (521)
+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|++++...+ ......
T Consensus 158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 237 (330)
T 3hym_B 158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237 (330)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHH
Confidence 999999999999999999999999999999988765 67778889999999999999987310 011246
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHH
Q psy8681 314 VWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392 (521)
Q Consensus 314 lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~ 392 (521)
+|..++.++...|+++.|...|++++...| ++.+|..++.++...|+ ++.|...|++++...|.+.. .+.
T Consensus 238 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~p~~~~------~~~ 308 (330)
T 3hym_B 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN---FENAVDYFHTALGLRRDDTF------SVT 308 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC---HHHHHHHHHTTTTTCSCCHH------HHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc---HHHHHHHHHHHHccCCCchH------HHH
Confidence 888899999999999999999999999886 68899999999999998 99999999999999987642 222
Q ss_pred HHHH-HHHHcCCHHH
Q psy8681 393 AWKE-FEAQHGDDES 406 (521)
Q Consensus 393 ~~~~-fE~~~G~~~~ 406 (521)
.+.. ++...|+.+.
T Consensus 309 ~l~~~~~~~~g~~~a 323 (330)
T 3hym_B 309 MLGHCIEMYIGDSEA 323 (330)
T ss_dssp HHHHHHHTTTTC---
T ss_pred HHHHHHHHHhCchhc
Confidence 2222 4556677654
No 19
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.85 E-value=2.7e-19 Score=181.38 Aligned_cols=272 Identities=14% Similarity=0.043 Sum_probs=229.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...+..+...|+++.|..+|++++...| .+..+|..++......| +++.|
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g----------------------~~~~A 118 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP---GDAEAWQFLGITQAENE----------------------NEQAA 118 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHCC----------------------CHHHH
Confidence 466799999999999999999999999999865 46789999999998888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH----------HHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY----------LRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y----------~~~~~ 258 (521)
..+|++++...|.+. ..|..++.+....|+.+.+... |++++..+|.+..+|..+ +..+.
T Consensus 119 ~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~ 188 (365)
T 4eqf_A 119 IVALQRCLELQPNNL--KALMALAVSYTNTSHQQDACEA--------LKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPV 188 (365)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCHHHHCC-------------------
T ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHHccccHHHHHHH--------HHHHHHhCccchHHHhhhccchHHHHHHHHHHh
Confidence 999999999999876 7899999999999999999877 999999999887777665 88888
Q ss_pred HcCCHHHHHHHHHHHHHcCCc--hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 259 DEGNADLIRETYERAIANIPP--TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~--~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
..|++++|...|++++...|. .. ++.++...|+++.|..+|++++...|. ...+|..++..+...|+++.|
T Consensus 189 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~g~~~~A 266 (365)
T 4eqf_A 189 DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE--DYSLWNRLGATLANGDRSEEA 266 (365)
T ss_dssp CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHH
T ss_pred hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCHHHH
Confidence 899999999999999999998 43 677888999999999999999996554 367999999999999999999
Q ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhh------HHHHHHHHHHHHHHHHcCCH
Q psy8681 332 RELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEK------EERVMLLEAWKEFEAQHGDD 404 (521)
Q Consensus 332 r~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~------~~~~~l~~~~~~fE~~~G~~ 404 (521)
...|++++...| ++.+|..++..+...|+ ++.|+..|++|+...|..... .....+|..+...-...|..
T Consensus 267 ~~~~~~al~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 267 VEAYTRALEIQPGFIRSRYNLGISCINLGA---YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHHCCC---HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 999999999987 58999999999999998 999999999999999875321 01245777777777788999
Q ss_pred HHHHHHHhhCchhhhh
Q psy8681 405 ESRAKLNSKLPRRAKK 420 (521)
Q Consensus 405 ~~~~~v~~~~p~~v~k 420 (521)
+.+..+..+.+..+.+
T Consensus 344 ~~a~~~~~~~l~~~~~ 359 (365)
T 4eqf_A 344 ELFQAANLGDLDVLLR 359 (365)
T ss_dssp HHHHHHHTTCCGGGTT
T ss_pred HHHHHHHHhhHHHHHH
Confidence 9999999888766643
No 20
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.85 E-value=1.7e-18 Score=184.19 Aligned_cols=261 Identities=14% Similarity=0.126 Sum_probs=193.4
Q ss_pred cchhhHHH-HhhhccCCCC-Chh-------hHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 91 ERDREEED-ERKDEGDRDS-DTT-------YGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P-~~~-------~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
+++.|..+ ++++ ...| +.. .|..++.++...|+++.|...|++++...| . ..+|..++......
T Consensus 217 ~~~~A~~~~~~~l--~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~---~-~~~~~~l~~~~~~~- 289 (537)
T 3fp2_A 217 LLTKSTDMYHSLL--SANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP---T-PNSYIFLALTLADK- 289 (537)
T ss_dssp HHHHHHHHHHHHH--C--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---C-HHHHHHHHHHTCCS-
T ss_pred HHHHHHHHHHHHH--HHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC---C-chHHHHHHHHHHHh-
Confidence 44455555 5555 5555 222 244444455555555555555555555533 1 34444444444444
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~ 241 (521)
++++.|..+|++++...|.+. .+|..++.+....|+.+.+... |++++.
T Consensus 290 ---------------------~~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~ 338 (537)
T 3fp2_A 290 ---------------------ENSQEFFKFFQKAVDLNPEYP--PTYYHRGQMYFILQDYKNAKED--------FQKAQS 338 (537)
T ss_dssp ---------------------SCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHH
T ss_pred ---------------------cCHHHHHHHHHHHhccCCCCH--HHHHHHHHHHHhcCCHHHHHHH--------HHHHHH
Confidence 489999999999999999876 7888889888899999998877 999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC----CCcH
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL----DMPE 312 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~----~~~~ 312 (521)
.+|.+..+|..++.++...|++++|...|++++...|.+. ++.++...|+++.|...|++++...|. ....
T Consensus 339 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 418 (537)
T 3fp2_A 339 LNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418 (537)
T ss_dssp HCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTT
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHH
Confidence 9999999999999999999999999999999999988765 677888999999999999999873221 1111
Q ss_pred HHHHHHHHHHHhc----------CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 313 LVWKAYIDFEVGQ----------GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 313 ~lw~~yi~~e~~~----------g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
..+...+..+... |+++.|...|++++...| ++.+|..++.++...|+ ++.|...|++++...|..
T Consensus 419 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~---~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 419 GPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEK---IDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHC--C
T ss_pred HHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCCc
Confidence 2234445566667 999999999999999887 68899999999999998 999999999999999987
Q ss_pred hhhHHHHHHHH
Q psy8681 382 SEKEERVMLLE 392 (521)
Q Consensus 382 ~~~~~~~~l~~ 392 (521)
+.......++.
T Consensus 496 ~~~~~~~~~~~ 506 (537)
T 3fp2_A 496 DEKLQATTFAE 506 (537)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhHHH
Confidence 65433333333
No 21
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.84 E-value=1.1e-19 Score=184.35 Aligned_cols=252 Identities=13% Similarity=0.005 Sum_probs=216.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
..+.|+++.|+.+ ++++ ..+| ++..|..++.++...|+++.|+.+|++++...| .+..+|..++......|
T Consensus 75 ~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g-- 147 (365)
T 4eqf_A 75 RLKEGDLPVTILFMEAAI--LQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP---NNLKALMALAVSYTNTS-- 147 (365)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHccc--
Confidence 6678889999999 9999 9999 799999999999999999999999999999965 46789999999998888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHH----------HHHHHHHHcCChhhHHHHHHhhHH
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYK----------AYTIHEKKYGDRAGIEDVIVSKRK 233 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~----------~~~~~e~~~G~~~~a~~~i~~krr 233 (521)
+++.|..+|++++...|... ..+. .++......|+.+.+...
T Consensus 148 --------------------~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------ 199 (365)
T 4eqf_A 148 --------------------HQQDACEALKNWIKQNPKYK--YLVKNKKGSPGLTRRMSKSPVDSSVLEGVKEL------ 199 (365)
T ss_dssp --------------------CHHHHHHHHHHHHHHCHHHH--CC-------------------CCHHHHHHHHH------
T ss_pred --------------------cHHHHHHHHHHHHHhCccch--HHHhhhccchHHHHHHHHHHhhhhhHHHHHHH------
Confidence 99999999999999988754 3333 336666677777878766
Q ss_pred HHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 234 FQYEEEVNSNPN--NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 234 ~~ye~al~~~P~--~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
|++++..+|. ++.+|..++.++...|++++|...|++++...|.+. ++.++...|+++.|...|++++...
T Consensus 200 --~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 277 (365)
T 4eqf_A 200 --YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ 277 (365)
T ss_dssp --HHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999999999 999999999999999999999999999999999865 6778889999999999999999966
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHcCCchhhHHHHHHHHH
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-------------VKVWMNYAQFEMSSGDEDSVSLARRVFER 373 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-------------~~vwi~ya~~e~~~g~~~~~~~AR~vfer 373 (521)
|. ...+|..++.++...|++++|+.+|++++...|. ..+|..++..+...|. .+.+..+..+
T Consensus 278 p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 352 (365)
T 4eqf_A 278 PG--FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ---PELFQAANLG 352 (365)
T ss_dssp TT--CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC---HHHHHHHHTT
T ss_pred CC--chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc---HHHHHHHHHh
Confidence 54 3678999999999999999999999999998643 6889999999999998 8888888887
Q ss_pred HHHHhc
Q psy8681 374 ANQALK 379 (521)
Q Consensus 374 Al~~~~ 379 (521)
++..+.
T Consensus 353 ~l~~~~ 358 (365)
T 4eqf_A 353 DLDVLL 358 (365)
T ss_dssp CCGGGT
T ss_pred hHHHHH
Confidence 665543
No 22
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=1.8e-19 Score=182.09 Aligned_cols=272 Identities=12% Similarity=-0.015 Sum_probs=224.5
Q ss_pred HHHhcCChhhhhh-hcC--------CCcH-----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHc
Q psy8681 66 MEEKQGNKIGEEG-ANK--------ENEE-----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQN 123 (521)
Q Consensus 66 ~e~~~gn~~~Ar~-ife--------~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~ 123 (521)
.+..+|+++.|.. .|+ .|.. ..+.|+++.|..+ ++++ ..+| ++..|..++..+...
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~ 111 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAV--QQDPKHMEAWQYLGTTQAEN 111 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHH--HSCTTCHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHC
Confidence 3345667777777 554 2321 7788999999999 9999 9999 789999999999999
Q ss_pred CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 124 GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
|+++.|...|++++...| .+..+|..++......| +++.|...|++++...|...
T Consensus 112 g~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~~~~~ 166 (368)
T 1fch_A 112 EQELLAISALRRCLELKP---DNQTALMALAVSFTNES----------------------LQRQACEILRDWLRYTPAYA 166 (368)
T ss_dssp TCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTSTTTG
T ss_pred cCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCcCcH
Confidence 999999999999999965 46788999999888888 99999999999999998765
Q ss_pred HHHHHH----------------HHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHcCCHHH
Q psy8681 204 TAEIYK----------------AYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 204 ~~~l~~----------------~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~g~~~~ 265 (521)
..+. .+..+. ..|+.+.+... |++++..+|. +..+|..++.++...|++++
T Consensus 167 --~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 167 --HLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKEL--------FLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp --GGCC---------------CTTHHHH-HHHHHHHHHHH--------HHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHH
T ss_pred --HHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHH--------HHHHHHhCcCcccHHHHHHHHHHHHHcCCHHH
Confidence 2322 233333 56777777766 9999999999 89999999999999999999
Q ss_pred HHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 266 IRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 266 Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
|...|++++...|.+. ++.++...|+++.|...|++++...|. ...+|..++..+...|+++.|...|++++.
T Consensus 236 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 313 (368)
T 1fch_A 236 AVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YIRSRYNLGISCINLGAHREAVEHFLEALN 313 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999865 577888999999999999999996553 367899999999999999999999999999
Q ss_pred cCC-C-----------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 341 RTV-H-----------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 341 ~~~-~-----------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..| + ..+|..++..+...|+ .+.|..++.+++..++.
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~l~~~~~ 362 (368)
T 1fch_A 314 MQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ---SDAYGAADARDLSTLLT 362 (368)
T ss_dssp HHHTC------CCCCCHHHHHHHHHHHHHHTC---GGGHHHHHTTCHHHHHH
T ss_pred hCCCCCCccccccchhhHHHHHHHHHHHHhCC---hHhHHHhHHHHHHHHHH
Confidence 875 3 6899999999999999 99999999999887653
No 23
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.84 E-value=9.8e-19 Score=176.67 Aligned_cols=291 Identities=12% Similarity=0.066 Sum_probs=238.0
Q ss_pred HHhcccchhhHH-H-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHH
Q psy8681 86 EERDKERDREEE-D-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE 158 (521)
Q Consensus 86 e~r~g~~e~Ar~-~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~ 158 (521)
+.-.|+++.|.. . ++++ ...| + ...|...+..+...|+++.|..+|++++...| .+..+|..++....
T Consensus 35 ~~~~~~~~~a~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~ 109 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGY--QFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP---KHMEAWQYLGTTQA 109 (368)
T ss_dssp -----------CHHHHCCC--CCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT---TCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhhhHHH--hcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHH
Confidence 345689999999 8 9888 7776 3 46799999999999999999999999999855 46788999999888
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHH
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~ 238 (521)
..| +++.|..+|++++...|.+. .+|..++......|+.+.+... |++
T Consensus 110 ~~g----------------------~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~--------~~~ 157 (368)
T 1fch_A 110 ENE----------------------QELLAISALRRCLELKPDNQ--TALMALAVSFTNESLQRQACEI--------LRD 157 (368)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHH
T ss_pred HCc----------------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHH
Confidence 888 99999999999999999876 7888899999999999999877 999
Q ss_pred HHhhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHcCCc--hh-----HHHHHHHcCCHHHH
Q psy8681 239 EVNSNPNNYDAWF----------------DYLRLLEDEGNADLIRETYERAIANIPP--TK-----FAELESLLGDMERA 295 (521)
Q Consensus 239 al~~~P~~~~~W~----------------~y~~~~~~~g~~~~Ar~~~erAl~~~P~--~~-----~a~le~~~g~~e~A 295 (521)
++..+|.+...|. .++.++ ..|++++|...|++++...|. .. ++.++...|+++.|
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A 236 (368)
T 1fch_A 158 WLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKA 236 (368)
T ss_dssp HHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999888775 344444 889999999999999999998 33 57788899999999
Q ss_pred HHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 296 r~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
...|++++...|. ...+|..++.++...|+++.|..+|++++...| ++.+|..++..+...|+ ++.|...|+++
T Consensus 237 ~~~~~~al~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a 311 (368)
T 1fch_A 237 VDCFTAALSVRPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA---HREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHHHH
T ss_pred HHHHHHHHHhCcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC---HHHHHHHHHHH
Confidence 9999999996554 357899999999999999999999999999987 68899999999999998 99999999999
Q ss_pred HHHhccchhhHH-----HHHHHHHHHHHHHHcCCHHHHHHHHhhCchhhh
Q psy8681 375 NQALKASSEKEE-----RVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK 419 (521)
Q Consensus 375 l~~~~~~~~~~~-----~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v~ 419 (521)
+...|.+..... ...+|..+...-...|+.+.+..+..+....+.
T Consensus 312 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 312 LNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999987621110 034566666666688999999998876654443
No 24
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.84 E-value=8.5e-18 Score=166.49 Aligned_cols=264 Identities=11% Similarity=-0.021 Sum_probs=227.7
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| ++..+...+..+...|+++.|..+|++++...|. +..++..++......|
T Consensus 16 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~---~~~~~~~~~~~~~~~~---------------------- 70 (330)
T 3hym_B 16 DGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF---HASCLPVHIGTLVELN---------------------- 70 (330)
T ss_dssp ----CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTTHHHHHHHHHHHT----------------------
T ss_pred hhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---ChhhHHHHHHHHHHhh----------------------
Confidence 4456 7889999999999999999999999999998664 4456666667666777
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC-ChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG-DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G-~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+++.|..+|++++...|.+. .+|..++......| +.+.+... |++++..+|.+..+|..++.++...|+
T Consensus 71 ~~~~A~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~l~~~~~~~~~ 140 (330)
T 3hym_B 71 KANELFYLSHKLVDLYPSNP--VSWFAVGCYYLMVGHKNEHARRY--------LSKATTLEKTYGPAWIAYGHSFAVESE 140 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTST--HHHHHHHHHHHHSCSCHHHHHHH--------HHHHHTTCTTCTHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHhhhhHHHHHHH--------HHHHHHhCCccHHHHHHHHHHHHHccC
Confidence 99999999999999999887 78888898888999 88888877 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~er 337 (521)
+++|...|++++...|... ++.++...|+++.|...|++++...|. ...+|..++.++...|+++.|..+|++
T Consensus 141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 218 (330)
T 3hym_B 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE--DPFVMHEVGVVAFQNGEWKTAEKWFLD 218 (330)
T ss_dssp HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999999999999998754 577788999999999999999997664 367899999999999999999999999
Q ss_pred HHhcC---------C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHH
Q psy8681 338 LLERT---------V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESR 407 (521)
Q Consensus 338 al~~~---------~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~ 407 (521)
++... + .+.+|..++..+...|+ ++.|...|++++...|.+. ..+.....+-...|+.+.+
T Consensus 219 a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~g~~~~A 289 (330)
T 3hym_B 219 ALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKK---YAEALDYHRQALVLIPQNA------STYSAIGYIHSLMGNFENA 289 (330)
T ss_dssp HHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHSTTCS------HHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhhhccccccccHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHhhCccch------HHHHHHHHHHHHhccHHHH
Confidence 99874 2 47899999999999998 9999999999999988764 3455555555578999988
Q ss_pred HHHHhhC
Q psy8681 408 AKLNSKL 414 (521)
Q Consensus 408 ~~v~~~~ 414 (521)
.....++
T Consensus 290 ~~~~~~a 296 (330)
T 3hym_B 290 VDYFHTA 296 (330)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 8887665
No 25
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.84 E-value=1.6e-18 Score=182.83 Aligned_cols=331 Identities=11% Similarity=0.013 Sum_probs=263.3
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC-----CCcH---------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHH
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK-----ENEE---------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEE 121 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife-----~P~~---------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~ 121 (521)
..|+. ..+...|+++.|..+|+ .|+. +...|+++.|... ++++ ..+| ++..|..++..+.
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKAL--ELKPDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHh--ccChHHHHHHHHHHHHHH
Confidence 55666 77788999999999999 6765 7788999999999 9999 9999 7899999999999
Q ss_pred HcCChhHHHHHHHHHHHhcCCccc--------------------------------------------------------
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENL-------------------------------------------------------- 145 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~-------------------------------------------------------- 145 (521)
..|++++|...|++++...|....
T Consensus 85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM 164 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence 999999999999999887542111
Q ss_pred --------------------cHHHHHHHHHHHHh---hh------hhccccch-----h-------------hHH--HHH
Q psy8681 146 --------------------DEKLFIAFAKFEEG---QR------EKYGDRAG-----I-------------EDV--IVS 176 (521)
Q Consensus 146 --------------------~~~lw~~~a~~e~~---~~------~~~~~~~~-----~-------------~~~--~l~ 176 (521)
+..+|...+..... .| ..+..... + ... .++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (514)
T 2gw1_A 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG 244 (514)
T ss_dssp HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence 12222222221111 11 00111111 0 011 122
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 177 KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 177 ~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
..+...|+++.|..+|++++...|. . .+|..++......|+.+.+... |++++..+|.+..+|..++.+
T Consensus 245 ~~~~~~~~~~~A~~~~~~~l~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 245 IFKFLKNDPLGAHEDIKKAIELFPR-V--NSYIYMALIMADRNDSTEYYNY--------FDKALKLDSNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHSSCHHHHHHHHHHHHHHCCC-H--HHHHHHHHHHHTSSCCTTGGGH--------HHHHHTTCTTCTHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcc-H--HHHHHHHHHHHHCCCHHHHHHH--------HHHHhhcCcCCHHHHHHHHHH
Confidence 3345568999999999999999998 4 7888899999999999998877 999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
+...|++++|...|++++...|.+. ++.+....|+++.|..+|+.++...|.+ ..+|..++..+...|+++.|
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~la~~~~~~~~~~~A 391 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEA--PEVPNFFAEILTDKNDFDKA 391 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTC--SHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccC--HHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999998765 5667778999999999999999865543 46888889999999999999
Q ss_pred HHHHHHHHhcCC-C------HHHHHHHHHHHHH---cCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHc
Q psy8681 332 RELHERLLERTV-H------VKVWMNYAQFEMS---SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 332 r~l~eral~~~~-~------~~vwi~ya~~e~~---~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~ 401 (521)
..+|++++...| + ..+|..++..+.. .|+ ++.|...|++++...|.+. ..+.....+-...
T Consensus 392 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~A~~~~~~a~~~~~~~~------~~~~~la~~~~~~ 462 (514)
T 2gw1_A 392 LKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVEN---FIEATNLLEKASKLDPRSE------QAKIGLAQMKLQQ 462 (514)
T ss_dssp HHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTH---HHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCC---HHHHHHHHHHHHHhCcccH------HHHHHHHHHHHHh
Confidence 999999999864 2 3499999999998 887 9999999999999988764 3445555555688
Q ss_pred CCHHHHHHHHhhC
Q psy8681 402 GDDESRAKLNSKL 414 (521)
Q Consensus 402 G~~~~~~~v~~~~ 414 (521)
|+.+.+.....+.
T Consensus 463 g~~~~A~~~~~~a 475 (514)
T 2gw1_A 463 EDIDEAITLFEES 475 (514)
T ss_dssp TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH
Confidence 9998888777655
No 26
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.82 E-value=5.9e-18 Score=179.92 Aligned_cols=330 Identities=11% Similarity=0.030 Sum_probs=252.4
Q ss_pred HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHH
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFE 120 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e 120 (521)
..|+. ..+...|+++.|..+|+ .|++ +.+.|+++.|+.. ++++ ..+| ++..|..++.++
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKAL--EIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHH--hcCCchHHHHHHHHHHH
Confidence 66666 78889999999999998 6765 7788999999999 9999 9999 799999999999
Q ss_pred HHcCChhHHHHHHHHHHHhcCCcccc------------------------------------------------------
Q psy8681 121 EQNGFVSGARKVYERAVEFFGEENLD------------------------------------------------------ 146 (521)
Q Consensus 121 ~~~g~~~~Ar~vye~Al~~~~~~~~~------------------------------------------------------ 146 (521)
...|+++.|...|+ ++...|+....
T Consensus 104 ~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS 182 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred HHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence 99999999999995 66543321100
Q ss_pred -----------HHHHHHHHHHHH--------hhh------hh-------ccccchhh------HHHHHhhhhhhhhHHHH
Q psy8681 147 -----------EKLFIAFAKFEE--------GQR------EK-------YGDRAGIE------DVIVSKRKFQYEEHERA 188 (521)
Q Consensus 147 -----------~~lw~~~a~~e~--------~~~------~~-------~~~~~~~~------~~~l~~~~~~~~~~e~A 188 (521)
..++..+..+.. ..+ .. .+....++ ...++..+...++++.|
T Consensus 183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 001111111100 000 00 11110111 11122334556789999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
..+|++++...|. . ..|..++......|+.+.+... |++++..+|.++.+|..++.++...|++++|..
T Consensus 263 ~~~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 331 (537)
T 3fp2_A 263 QVLLQESINLHPT-P--NSYIFLALTLADKENSQEFFKF--------FQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKE 331 (537)
T ss_dssp HHHHHHHHHHCCC-H--HHHHHHHHHTCCSSCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCC-c--hHHHHHHHHHHHhcCHHHHHHH--------HHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 9999999999998 3 6788888888888999999877 999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|... ++.++...|+++.|..+|+.++...|.+ ..+|..++.++...|+++.|...|++++...|
T Consensus 332 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~ 409 (537)
T 3fp2_A 332 DFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTL--PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE 409 (537)
T ss_dssp HHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence 9999999998765 6778889999999999999999965543 46888899999999999999999999998763
Q ss_pred -C------HHHHHHHHHHHHHc----------CCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHH
Q psy8681 344 -H------VKVWMNYAQFEMSS----------GDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES 406 (521)
Q Consensus 344 -~------~~vwi~ya~~e~~~----------g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~ 406 (521)
+ ...+...+..+... |+ ++.|...|++++...|.+. ..+..+..+-...|+.+.
T Consensus 410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~A~~~~~~a~~~~p~~~------~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEK---FNAAIKLLTKACELDPRSE------QAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHH---HHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHH
T ss_pred cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhH---HHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhccHHH
Confidence 1 23355566666666 65 9999999999999999764 345555555668899988
Q ss_pred HHHHHhhC
Q psy8681 407 RAKLNSKL 414 (521)
Q Consensus 407 ~~~v~~~~ 414 (521)
+....++.
T Consensus 481 A~~~~~~a 488 (537)
T 3fp2_A 481 AIELFEDS 488 (537)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777655
No 27
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.82 E-value=1.3e-18 Score=172.23 Aligned_cols=253 Identities=11% Similarity=-0.029 Sum_probs=214.6
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
...|+++.|..+ ++++ ...| ++..|..++..+...|+++.|...|++++...| .+..+|..++......|
T Consensus 32 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~--- 103 (327)
T 3cv0_A 32 LKLANLAEAALAFEAVC--QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP---KDIAVHAALAVSHTNEH--- 103 (327)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT---
T ss_pred HHhccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc---CCHHHHHHHHHHHHHcC---
Confidence 345666666667 7999 8899 789999999999999999999999999999865 46788899998888888
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH--------------HH-HHHHcCChhhHHHHHH
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY--------------TI-HEKKYGDRAGIEDVIV 229 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~--------------~~-~e~~~G~~~~a~~~i~ 229 (521)
+++.|...|++++...|... .++..+ +. +....|+.+.+...
T Consensus 104 -------------------~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~-- 160 (327)
T 3cv0_A 104 -------------------NANAALASLRAWLLSQPQYE--QLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTL-- 160 (327)
T ss_dssp -------------------CHHHHHHHHHHHHHTSTTTT--TC--------------------CCTTSHHHHHHHHHH--
T ss_pred -------------------CHHHHHHHHHHHHHhCCccH--HHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHH--
Confidence 99999999999999988865 344333 22 23344555666655
Q ss_pred hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
|++++..+|.+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|++++.
T Consensus 161 ------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 234 (327)
T 3cv0_A 161 ------LHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALD 234 (327)
T ss_dssp ------HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------HHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999765 57778899999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------------HHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-------------VKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-------------~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
..|. ...+|..++.++...|+++.|...|++++...|. +.+|..++..+...|+ ++.|..+|
T Consensus 235 ~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~ 309 (327)
T 3cv0_A 235 INPG--YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNR---PDLVELTY 309 (327)
T ss_dssp HCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTC---HHHHHHHT
T ss_pred cCCC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCC---HHHHHHHH
Confidence 6554 3578888999999999999999999999998765 6799999999999998 99999999
Q ss_pred HHHHHHhccc
Q psy8681 372 ERANQALKAS 381 (521)
Q Consensus 372 erAl~~~~~~ 381 (521)
++++..+|..
T Consensus 310 ~~~l~~~~~~ 319 (327)
T 3cv0_A 310 AQNVEPFAKE 319 (327)
T ss_dssp TCCSHHHHHH
T ss_pred HHHHHhcchh
Confidence 9999888753
No 28
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.78 E-value=9.5e-17 Score=158.67 Aligned_cols=270 Identities=12% Similarity=0.017 Sum_probs=226.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...+..+...|++++|..+|++++...| .+..+|..++......| +++.|
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~----------------------~~~~A 74 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP---EREEAWRSLGLTQAENE----------------------KDGLA 74 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 357799999999999999999999999999865 46788888888888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH--------------H
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY--------------L 254 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y--------------~ 254 (521)
...|++++...|.+. ..|..++......|+.+.+... |++++..+|.+...|..+ +
T Consensus 75 ~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (327)
T 3cv0_A 75 IIALNHARMLDPKDI--AVHAALAVSHTNEHNANAALAS--------LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSE 144 (327)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTSTTTTTC-------------------
T ss_pred HHHHHHHHhcCcCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999876 7888888888999999999877 999999999998888877 5
Q ss_pred H-HHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCh
Q psy8681 255 R-LLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 255 ~-~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~ 328 (521)
. ++...|++++|...|++++...|... ++.++...|+++.|..+|++++...|. ...+|..++..+...|++
T Consensus 145 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~ 222 (327)
T 3cv0_A 145 DFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD--DAQLWNKLGATLANGNRP 222 (327)
T ss_dssp -CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHcCCH
Confidence 5 46677889999999999999998765 577788999999999999999996654 357899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHH------HHHHHHHHHHHHHHc
Q psy8681 329 DKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE------RVMLLEAWKEFEAQH 401 (521)
Q Consensus 329 ~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~------~~~l~~~~~~fE~~~ 401 (521)
+.|..+|++++...| ++.+|..++..+...|+ ++.|...|++++...|....... ...++..+...-...
T Consensus 223 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ---YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 999999999999987 68899999999999998 99999999999999987321111 234566666666688
Q ss_pred CCHHHHHHHHhhCchhh
Q psy8681 402 GDDESRAKLNSKLPRRA 418 (521)
Q Consensus 402 G~~~~~~~v~~~~p~~v 418 (521)
|+.+.+..+..+.-...
T Consensus 300 g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 300 NRPDLVELTYAQNVEPF 316 (327)
T ss_dssp TCHHHHHHHTTCCSHHH
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999988877664333
No 29
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=2.6e-16 Score=161.72 Aligned_cols=241 Identities=10% Similarity=-0.001 Sum_probs=206.3
Q ss_pred hhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhh
Q psy8681 101 KDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179 (521)
Q Consensus 101 al~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~ 179 (521)
++ ...| ...+|..++.++...|++++|...|+++|...| .+..+|...+......|
T Consensus 89 ai--~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P---~~~~a~~~~g~~l~~~g------------------ 145 (382)
T 2h6f_A 89 QI--IYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNA---ANYTVWHFRRVLLKSLQ------------------ 145 (382)
T ss_dssp EE--CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT------------------
T ss_pred hh--hCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc---cCHHHHHHHHHHHHHcc------------------
Confidence 45 6677 688999999999999999999999999999965 47889999999888887
Q ss_pred hhhhh-HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 180 FQYEE-HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 180 ~~~~~-~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
. ++.|...|+++|...|.+. .+|...+.+....|+.+.+... |+++|..+|.++.+|..++.++.
T Consensus 146 ----~d~~eAl~~~~~al~l~P~~~--~a~~~~g~~~~~~g~~~eAl~~--------~~kal~ldP~~~~a~~~lg~~~~ 211 (382)
T 2h6f_A 146 ----KDLHEEMNYITAIIEEQPKNY--QVWHHRRVLVEWLRDPSQELEF--------IADILNQDAKNYHAWQHRQWVIQ 211 (382)
T ss_dssp ----CCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCCTTHHHH--------HHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ----cCHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCccCHHHHHHHHHHHH
Confidence 7 9999999999999999987 8999999999999999999877 99999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh-----HHHHHHH-cCCHHHH-----HHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-
Q psy8681 259 DEGNADLIRETYERAIANIPPTK-----FAELESL-LGDMERA-----RAIYELAISQPRLDMPELVWKAYIDFEVGQG- 326 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~-~g~~e~A-----r~ife~al~~~~~~~~~~lw~~yi~~e~~~g- 326 (521)
..|++++|...|++||...|.+. .+.+... .|..+.| ...|.+++...|. ...+|..++.++...|
T Consensus 212 ~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~--~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 212 EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH--NESAWNYLKGILQDRGL 289 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT--CHHHHHHHHHHHTTTCG
T ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHccCc
Confidence 99999999999999999999876 4555666 5654677 5889999997664 3678988888888877
Q ss_pred -ChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCc-----h-hhHHHHHHHHHH-HHHhccc
Q psy8681 327 -ERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDE-----D-SVSLARRVFERA-NQALKAS 381 (521)
Q Consensus 327 -~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~-----~-~~~~AR~vferA-l~~~~~~ 381 (521)
++++|...+.++ ...| ++.++..++.++...|.. + .+++|..+|+++ ++..|..
T Consensus 290 ~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r 352 (382)
T 2h6f_A 290 SKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIR 352 (382)
T ss_dssp GGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred cchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchh
Confidence 689999999887 6665 678888888888876411 1 268999999999 8888864
No 30
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.75 E-value=1.7e-16 Score=163.19 Aligned_cols=249 Identities=10% Similarity=0.027 Sum_probs=208.1
Q ss_pred CchhhhhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHHHhhhccCCCC-ChhhHHHHHHHHHHcCC-
Q psy8681 51 PNLKLLEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGF- 125 (521)
Q Consensus 51 rai~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~eral~~~~~P-~~~~W~~~a~~e~~~g~- 125 (521)
.+|.+.|.. .+|.. .++...|+++.|...| ++++ ..+| +..+|...+.++...|+
T Consensus 88 ~ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~------------------~~al--~l~P~~~~a~~~~g~~l~~~g~d 147 (382)
T 2h6f_A 88 VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLT------------------RDAI--ELNAANYTVWHFRRVLLKSLQKD 147 (382)
T ss_dssp SEECCCHHHHHHHHHHHHHHHHTCCCHHHHHHH------------------HHHH--HHCTTCHHHHHHHHHHHHHTTCC
T ss_pred hhhhCChhhHHHHHHHHHHHHHCCChHHHHHHH------------------HHHH--HhCccCHHHHHHHHHHHHHcccC
Confidence 467889998 88877 6666555555555554 5999 9999 79999999999999996
Q ss_pred hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHH
Q psy8681 126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTA 205 (521)
Q Consensus 126 ~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~ 205 (521)
+++|...|++|+...| .+..+|...+......| +++.|...|+++|...|.+.
T Consensus 148 ~~eAl~~~~~al~l~P---~~~~a~~~~g~~~~~~g----------------------~~~eAl~~~~kal~ldP~~~-- 200 (382)
T 2h6f_A 148 LHEEMNYITAIIEEQP---KNYQVWHHRRVLVEWLR----------------------DPSQELEFIADILNQDAKNY-- 200 (382)
T ss_dssp HHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CCTTHHHHHHHHHHHCTTCH--
T ss_pred HHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHHhCccCH--
Confidence 9999999999999965 47889999999998888 99999999999999999987
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHcCCc
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED-EGNADLI-----RETYERAIANIPP 279 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~-~g~~~~A-----r~~~erAl~~~P~ 279 (521)
..|...+.+....|+.+.+... |+++|..+|.+..+|..++.++.. .|..++| ...|++|+...|.
T Consensus 201 ~a~~~lg~~~~~~g~~~eAl~~--------~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~ 272 (382)
T 2h6f_A 201 HAWQHRQWVIQEFKLWDNELQY--------VDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH 272 (382)
T ss_dssp HHHHHHHHHHHHHTCCTTHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHcCChHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC
Confidence 8899999999999999999877 999999999999999999999999 5665777 5899999999998
Q ss_pred hh-----HHHHHHHcC--CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC--------C-hHHHHHHHHHH-HhcC
Q psy8681 280 TK-----FAELESLLG--DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG--------E-RDKVRELHERL-LERT 342 (521)
Q Consensus 280 ~~-----~a~le~~~g--~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g--------~-~~~Ar~l~era-l~~~ 342 (521)
+. ++.+....| ++++|...+..+ ...+. ...++..+++++...| + +++|..+|+++ ++..
T Consensus 273 ~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~--~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 273 NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHS--SPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCC--CHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCC--CHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC
Confidence 76 345555667 689999999887 54433 3567777777777764 3 58999999999 8888
Q ss_pred C-CHHHHHHHHHHHHH
Q psy8681 343 V-HVKVWMNYAQFEMS 357 (521)
Q Consensus 343 ~-~~~vwi~ya~~e~~ 357 (521)
| ....|..++..+..
T Consensus 350 P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 350 TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp GGGHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHH
Confidence 7 67899888776554
No 31
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=3.9e-16 Score=147.25 Aligned_cols=198 Identities=16% Similarity=0.075 Sum_probs=146.6
Q ss_pred C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 108 S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 108 P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
| ++..|..++..+...|++++|...|++++...| .++.+|..++......| +++
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g----------------------~~~ 56 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP---QDPEALYWLARTQLKLG----------------------LVN 56 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS---SCHHHHHHHHHHHHHTT----------------------CHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------CHH
Confidence 5 788999999999999999999999999999855 57889999999998888 999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-----------CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-----------GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-----------G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.|...|++++...|.+. ..|..++.+.... |+.+.+... |++++..+|.+..+|..++.
T Consensus 57 ~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~--------~~~al~~~P~~~~~~~~lg~ 126 (217)
T 2pl2_A 57 PALENGKTLVARTPRYL--GGYMVLSEAYVALYRQAEDRERGKGYLEQALSV--------LKDAERVNPRYAPLHLQRGL 126 (217)
T ss_dssp HHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH--------HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcH--HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH--------HHHHHHhCcccHHHHHHHHH
Confidence 99999999999999887 7788888887777 888888766 99999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
++...|++++|...|++|+... .+ ..+|..++..+...|+++.|...|
T Consensus 127 ~~~~~g~~~~A~~~~~~al~~~-~~-------------------------------~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 127 VYALLGERDKAEASLKQALALE-DT-------------------------------PEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-CC-------------------------------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcc-cc-------------------------------hHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999998888888888888765 32 234455555555556666666666
Q ss_pred HHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 336 ERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 336 eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
++++...| ++.+|..++..+...|+ ++.|...|+++.
T Consensus 175 ~~al~~~P~~~~~~~~la~~~~~~g~---~~~A~~~~~~~~ 212 (217)
T 2pl2_A 175 AKALEQAPKDLDLRVRYASALLLKGK---AEEAARAAALEH 212 (217)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHTC------------------
T ss_pred HHHHHhCCCChHHHHHHHHHHHHccC---HHHHHHHHHHHh
Confidence 66666554 45555556655555555 566666655553
No 32
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.72 E-value=4.8e-16 Score=146.62 Aligned_cols=183 Identities=15% Similarity=0.033 Sum_probs=148.6
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
++.+|..++......| ++++|...|++++...|.+. ..|..++......|+.+.+.
T Consensus 4 ~~~~~~~lg~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~ 59 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALG----------------------RYDAALTLFERALKENPQDP--EALYWLARTQLKLGLVNPAL 59 (217)
T ss_dssp CCHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHTTSSSCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHH
Confidence 5567788888777777 99999999999999999987 78889999999999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.. |++++..+|.++.+|..++.++...+.. .+. .....|+++.|...|++++..
T Consensus 60 ~~--------~~~al~~~P~~~~a~~~lg~~~~~~~~~-------------~~~-----~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 60 EN--------GKTLVARTPRYLGGYMVLSEAYVALYRQ-------------AED-----RERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp HH--------HHHHHHHCTTCHHHHHHHHHHHHHHHHT-------------CSS-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--------HHHHHHhCCCcHHHHHHHHHHHHHhhhh-------------hhh-----hcccccCHHHHHHHHHHHHHh
Confidence 77 9999999999999999999998877100 000 011124444444445555443
Q ss_pred CCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 306 ~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
.|. ...+|..++..+...|++++|+..|++++....++.+|..++..+...|+ ++.|...|++++...|.+..
T Consensus 114 ~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~P~~~~ 186 (217)
T 2pl2_A 114 NPR--YAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAELYLSMGR---LDEALAQYAKALEQAPKDLD 186 (217)
T ss_dssp CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSTTCHH
T ss_pred Ccc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCChH
Confidence 332 35688888899999999999999999999987778999999999999999 99999999999999998754
No 33
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.72 E-value=8.1e-16 Score=148.47 Aligned_cols=234 Identities=11% Similarity=0.019 Sum_probs=179.7
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
++.+..+|..+...|+++.|..+|++++...|. +..+|..++......| +++.|.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~~l~~~~~~~~----------------------~~~~A~ 57 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN---SPYIYNRRAVCYYELA----------------------KYDLAQ 57 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC---CSTTHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---cHHHHHHHHHHHHHHh----------------------hHHHHH
Confidence 456778888888888888888888888887653 4456777777777776 888888
Q ss_pred HHHHHHHhcCChhh--HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDR--TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~--~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
..|++++. .|.+. ....|..++......|+.+.|... |++++..+|.+..+|..++.++...|++++|.
T Consensus 58 ~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 128 (272)
T 3u4t_A 58 KDIETYFS-KVNATKAKSADFEYYGKILMKKGQDSLAIQQ--------YQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128 (272)
T ss_dssp HHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHh-ccCchhHHHHHHHHHHHHHHHcccHHHHHHH--------HHHHHhcCcccHHHHHHHHHHHHHccCHHHHH
Confidence 88888888 44322 124477777777788888888766 88888888888888888888888888888888
Q ss_pred HHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC---hHHHHHHHHHHH
Q psy8681 268 ETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE---RDKVRELHERLL 339 (521)
Q Consensus 268 ~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~---~~~Ar~l~eral 339 (521)
..|++++...|... ++......++++.|...|++++...|.+ ...|...+..+...|+ ++.|...|++++
T Consensus 129 ~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 206 (272)
T 3u4t_A 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI--YIGYLWRARANAAQDPDTKQGLAKPYYEKLI 206 (272)
T ss_dssp HHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred HHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc--hHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence 88888888877665 3323334568888888888888865543 4566666677777777 888999999999
Q ss_pred hcC---CC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 340 ERT---VH------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 340 ~~~---~~------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
... |. ..+|..++.++...|+ +++|...|++++...|+++
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~al~~~p~~~ 255 (272)
T 3u4t_A 207 EVCAPGGAKYKDELIEANEYIAYYYTINRD---KVKADAAWKNILALDPTNK 255 (272)
T ss_dssp HHHGGGGGGGHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCccHH
Confidence 875 33 2578889999998888 9999999999999999875
No 34
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.71 E-value=5.2e-15 Score=146.28 Aligned_cols=246 Identities=8% Similarity=0.031 Sum_probs=207.3
Q ss_pred hcccchhhHHH-HhhhccCCCC-C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKY 164 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~ 164 (521)
-.|++..|+.. ++.. ...| + ......+++.+...|+++.|...++.. .+.....+..++.+....+
T Consensus 11 ~~g~y~~ai~~~~~~~--~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~------~~~~~~a~~~la~~~~~~~--- 79 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVK--PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS------SAPELQAVRMFAEYLASHS--- 79 (291)
T ss_dssp HTTCHHHHHHHHHHSC--CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT------SCHHHHHHHHHHHHHHCST---
T ss_pred HHHHHHHHHHHHHhcc--cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc------CChhHHHHHHHHHHHcCCC---
Confidence 36888888888 8888 7778 3 467788899999999999999866542 2234556667777777776
Q ss_pred cccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 165 GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~--~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
+.+.|...|+.++.. .|.+. .++...+......|+.+.|... |++
T Consensus 80 -------------------~~~~A~~~l~~ll~~~~~P~~~--~~~~~la~~~~~~g~~~~Al~~--------l~~---- 126 (291)
T 3mkr_A 80 -------------------RRDAIVAELDREMSRSVDVTNT--TFLLMAASIYFYDQNPDAALRT--------LHQ---- 126 (291)
T ss_dssp -------------------THHHHHHHHHHHHHSCCCCSCH--HHHHHHHHHHHHTTCHHHHHHH--------HTT----
T ss_pred -------------------cHHHHHHHHHHHHhcccCCCCH--HHHHHHHHHHHHCCCHHHHHHH--------HhC----
Confidence 899999999999875 58776 6788888888899999988876 555
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|.+..+|..++.++...|++++|...|++++...|.+. |..+....|+++.|..+|++++...|. ...+|
T Consensus 127 -~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~--~~~~~ 203 (291)
T 3mkr_A 127 -GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP--TLLLL 203 (291)
T ss_dssp -CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC--CHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC--cHHHH
Confidence 89999999999999999999999999999999998865 334444569999999999999996554 46789
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhH-HHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVS-LARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~-~AR~vferAl~~~~~~~~ 383 (521)
...+..+...|++++|...|++++...| ++.+|..++.+....|. .. .+..++++++...|+++.
T Consensus 204 ~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~---~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 204 NGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGK---PPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCCCChH
Confidence 9999999999999999999999999998 79999999999999887 65 578999999999999864
No 35
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.71 E-value=7.3e-16 Score=148.78 Aligned_cols=237 Identities=10% Similarity=-0.018 Sum_probs=195.4
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhhhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL-DEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~-~~~lw~~~a~~e~~~~~~ 163 (521)
...|+++.|+.+ ++++ ...| ++..|..++..+...|+++.|...|++++. .|.++. ...+|..++......|
T Consensus 14 ~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~~~~~~~-- 88 (272)
T 3u4t_A 14 FKNNNYAEAIEVFNKLE--AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYYGKILMKKG-- 88 (272)
T ss_dssp HTTTCHHHHHHHHHHHH--HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHHHHHHTT--
T ss_pred HHhcCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHHHHHHcc--
Confidence 346777788888 8999 9999 688999999999999999999999999999 443332 2667888998888888
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+++.|...|+++++..|... .+|..++.+....|+.+.+... |++++..+
T Consensus 89 --------------------~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~ 138 (272)
T 3u4t_A 89 --------------------QDSLAIQQYQAAVDRDTTRL--DMYGQIGSYFYNKGNFPLAIQY--------MEKQIRPT 138 (272)
T ss_dssp --------------------CHHHHHHHHHHHHHHSTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HGGGCCSS
T ss_pred --------------------cHHHHHHHHHHHHhcCcccH--HHHHHHHHHHHHccCHHHHHHH--------HHHHhhcC
Confidence 99999999999999999887 7899999999999999999877 99999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCC---HHHHHHHHHHHHcCC---CCC---
Q psy8681 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD---MERARAIYELAISQP---RLD--- 309 (521)
Q Consensus 244 P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~---~e~Ar~ife~al~~~---~~~--- 309 (521)
|.+..+|..++......+++++|...|++++...|... .+.+...+|+ ++.|...|++++... +..
T Consensus 139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 99999999999555556699999999999999999865 4666677788 888999999998742 110
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 310 MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 310 ~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
....+|..++.++...|++++|...|++++...| ++.+|-....+....
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 0125777788888999999999999999999998 577777666655443
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=6.1e-15 Score=140.39 Aligned_cols=223 Identities=14% Similarity=0.032 Sum_probs=196.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|...|..+...|+++.|..+|++++... .++.+|..++......| +++.|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~~~~~----------------------~~~~A~ 58 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH----KDITYLNNRAAAEYEKG----------------------EYETAI 58 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----CCTHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh----ccHHHHHHHHHHHHHcc----------------------cHHHHH
Confidence 5789999999999999999999999999985 35778899998888888 999999
Q ss_pred HHHHHHHhcCChhh-----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Q psy8681 190 VIYKYALDHIPKDR-----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD 264 (521)
Q Consensus 190 ~iy~~aL~~~P~~~-----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~ 264 (521)
..|++++...|... ...+|..++......|+.+.+... |++++..+|. +..+...|+++
T Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~~~--------~~~~~~~~~~~ 122 (258)
T 3uq3_A 59 STLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEY--------YQKSLTEHRT--------ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCCC--------HHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHH--------HHHHHhcCch--------hHHHHHHhHHH
Confidence 99999999877641 136888888888899999999877 9999999887 34456667889
Q ss_pred HHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q psy8681 265 LIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLL 339 (521)
Q Consensus 265 ~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral 339 (521)
+|...|++++...|... ++.+....|+++.|...|++++...|. ...+|...+..+...|+++.|...|++++
T Consensus 123 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--DARGYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 99999999999988765 677788999999999999999996554 35789899999999999999999999999
Q ss_pred hcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 340 ERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 340 ~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
...| ++.+|..++..+...|+ ++.|...|++++...|
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~a~~~~~ 238 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKE---YASALETLDAARTKDA 238 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHhCh
Confidence 9987 68999999999999998 9999999999999983
No 37
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=8.3e-16 Score=161.01 Aligned_cols=291 Identities=12% Similarity=0.045 Sum_probs=186.4
Q ss_pred hhhH-HHHHH--HHHHhcCChhhhhhhcC----------CC---cH----------HHh--cccchhhHHH-HhhhccCC
Q psy8681 56 LEKA-KAWKK--AMEEKQGNKIGEEGANK----------EN---EE----------EER--DKERDREEED-ERKDEGDR 106 (521)
Q Consensus 56 lP~~-~~W~~--~~e~~~gn~~~Ar~ife----------~P---~~----------e~r--~g~~e~Ar~~-eral~~~~ 106 (521)
.|++ ..|.. .++..+|+++.|...|+ .| .. .+. .++++.|+.. ++++ ..
T Consensus 90 ~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal--~~ 167 (472)
T 4g1t_A 90 EIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL--EK 167 (472)
T ss_dssp TTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH--HH
T ss_pred chHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH--Hh
Confidence 3444 55655 67778888888877775 11 11 122 3467777777 7777 77
Q ss_pred CC-ChhhHHHHHHHHHH---cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhh
Q psy8681 107 DS-DTTYGMRELVFEEQ---NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQY 182 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~---~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (521)
.| ++..|..++..... .+..+.|...|++|+...| .+..++..++......+ ...
T Consensus 168 ~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p---~~~~~~~~l~~~~~~~~------------------~~~ 226 (472)
T 4g1t_A 168 KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP---DNQYLKVLLALKLHKMR------------------EEG 226 (472)
T ss_dssp STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS---SCHHHHHHHHHHHHHCC---------------------
T ss_pred CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC---cchHHHHHHHHHHHHHH------------------hhh
Confidence 77 56777776666433 4566777777777777754 34445544443222211 111
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-- 260 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~-- 260 (521)
+.++.|..+|++++...|... .++..++.+....|+.+.+... |++++..+|.+..+|..++..+...
T Consensus 227 ~~~~~a~~~~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~y~~~~~ 296 (472)
T 4g1t_A 227 EEEGEGEKLVEEALEKAPGVT--DVLRSAAKFYRRKDEPDKAIEL--------LKKALEYIPNNAYLHCQIGCCYRAKVF 296 (472)
T ss_dssp ---CHHHHHHHHHHHHCSSCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHcCchHHHHHH--------HHHHHHhCCChHHHHHHHHHHHHHHHH
Confidence 367788899999998888876 7788888888888988888876 8999999999998888888765432
Q ss_pred -----------------CCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCC-cHHHHHH
Q psy8681 261 -----------------GNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDM-PELVWKA 317 (521)
Q Consensus 261 -----------------g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~-~~~lw~~ 317 (521)
+..+.|...|++++...|... .+.++...|+++.|...|++++...+.+. ...++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~ 376 (472)
T 4g1t_A 297 QVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLR 376 (472)
T ss_dssp HHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 235678888888888877754 67778888999999999999887543221 1234555
Q ss_pred HHHH-HHhcCChHHHHHHHHHHHhcCC-------------------------CHHHHHHHHHHHHHcCCchhhHHHHHHH
Q psy8681 318 YIDF-EVGQGERDKVRELHERLLERTV-------------------------HVKVWMNYAQFEMSSGDEDSVSLARRVF 371 (521)
Q Consensus 318 yi~~-e~~~g~~~~Ar~l~eral~~~~-------------------------~~~vwi~ya~~e~~~g~~~~~~~AR~vf 371 (521)
|+.+ +...|++++|...|++++...| ++.+|..++..+...|+ +++|...|
T Consensus 377 ~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~---~~~A~~~y 453 (472)
T 4g1t_A 377 YGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEK---MQQADEDS 453 (472)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHH---CC------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHH
Confidence 6554 3467888888888888876643 35677778887777776 89999999
Q ss_pred HHHHHHhccch
Q psy8681 372 ERANQALKASS 382 (521)
Q Consensus 372 erAl~~~~~~~ 382 (521)
++|++..|.++
T Consensus 454 ~kALe~~~~~p 464 (472)
T 4g1t_A 454 ERGLESGSLIP 464 (472)
T ss_dssp -----------
T ss_pred HHHHhcCCCCC
Confidence 99998776654
No 38
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.67 E-value=3.1e-15 Score=141.45 Aligned_cols=210 Identities=16% Similarity=0.100 Sum_probs=135.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..|...+..+...|+++.|..+|++++...| .+..+|..++......| +++.|
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A 76 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK---EDAIPYINFANLLSSVN----------------------ELERA 76 (243)
T ss_dssp --------------------CCTTHHHHHTTCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc---ccHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 467788888888888888888888888888754 35677888887777777 88888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
..+|++++...|... .+|..++.+....|+.+.+... |++++..+|.+..+|..++.++...|++++|..
T Consensus 77 ~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~ 146 (243)
T 2q7f_A 77 LAFYDKALELDSSAA--TAYYGAGNVYVVKEMYKEAKDM--------FEKALRAGMENGDLFYMLGTVLVKLEQPKLALP 146 (243)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHcCCcch--HHHHHHHHHHHHhccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence 888888888888765 6777777777788888888766 888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|... ++.++...|+++.|...|+.++...+. ...+|..++.++...|+++.|...|++++...|
T Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 147 YLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 8888888777543 344455556666666666666554332 234566666666666666666666666666655
Q ss_pred -CHHHHHHHHHHH
Q psy8681 344 -HVKVWMNYAQFE 355 (521)
Q Consensus 344 -~~~vwi~ya~~e 355 (521)
++.+|..++.+.
T Consensus 225 ~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 225 DHMLALHAKKLLG 237 (243)
T ss_dssp TCHHHHHHHTC--
T ss_pred chHHHHHHHHHHH
Confidence 455555554443
No 39
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.67 E-value=3.3e-15 Score=152.17 Aligned_cols=281 Identities=12% Similarity=-0.015 Sum_probs=213.6
Q ss_pred hcccchhhHHH-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEE 158 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~ 158 (521)
..|+++.|... ++++ ...| + ..+|..++..+...|+++.|...|++++.... +.+....++..++....
T Consensus 21 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 98 (406)
T 3sf4_A 21 KSGDCRAGVSFFEAAV--QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 98 (406)
T ss_dssp HTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 34556666666 6888 7777 4 46899999999999999999999999998742 22233567777777777
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCC--------------
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGD-------------- 220 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~-------------- 220 (521)
..| +++.|...|++++...|... ...++..++.+....|+
T Consensus 99 ~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 99 VLG----------------------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HcC----------------------CHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 777 99999999999998866432 13467777777777787
Q ss_pred ------hhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------
Q psy8681 221 ------RAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------- 281 (521)
Q Consensus 221 ------~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------- 281 (521)
.+.+... |++++.. .|....+|..++.++...|++++|...|++++...|...
T Consensus 157 ~~a~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 228 (406)
T 3sf4_A 157 EEVRDALQAAVDF--------YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 228 (406)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 6666655 7777765 334456899999999999999999999999998755432
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCC--C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRL--D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VK 346 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~--~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~ 346 (521)
++.++...|+++.|...|++++...+. + ....++...+.++...|+++.|...|++++...+ + ..
T Consensus 229 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 308 (406)
T 3sf4_A 229 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 308 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 567788999999999999999873211 1 1145677778889999999999999999998742 2 66
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCC
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~ 403 (521)
+|..++.++...|+ ++.|...|++|+...+..++.......+..+..+-...|+
T Consensus 309 ~~~~la~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 362 (406)
T 3sf4_A 309 ACWSLGNAYTALGN---HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGL 362 (406)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhH
Confidence 88889999999998 9999999999999987765544444444444444444444
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=9.2e-15 Score=139.13 Aligned_cols=211 Identities=16% Similarity=0.052 Sum_probs=177.1
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc----HHHHHHHHHHHHhhhh
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD----EKLFIAFAKFEEGQRE 162 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~----~~lw~~~a~~e~~~~~ 162 (521)
..|+++.|..+ ++++ ...+++..|..++..+...|+++.|...|++++...|....+ ..+|..++......+
T Consensus 17 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 93 (258)
T 3uq3_A 17 KARQFDEAIEHYNKAW--ELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLG- 93 (258)
T ss_dssp HTTCHHHHHHHHHHHH--HHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HhccHHHHHHHHHHHH--HhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcc-
Confidence 34555566666 6888 555778999999999999999999999999999986532111 578888888888887
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
+++.|...|++++...|.. .++.. .|+.+.+... |++++..
T Consensus 94 ---------------------~~~~A~~~~~~a~~~~~~~---~~~~~-------~~~~~~a~~~--------~~~~~~~ 134 (258)
T 3uq3_A 94 ---------------------DLKKTIEYYQKSLTEHRTA---DILTK-------LRNAEKELKK--------AEAEAYV 134 (258)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCCCH---HHHHH-------HHHHHHHHHH--------HHHHHHC
T ss_pred ---------------------cHHHHHHHHHHHHhcCchh---HHHHH-------HhHHHHHHHH--------HHHHHHc
Confidence 9999999999999998874 23333 3444555554 9999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
+|.+..+|..++..+...|++++|...|++++...|.+. ++.++...|+++.|...|+.++...|. ...+|..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~ 212 (258)
T 3uq3_A 135 NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FVRAYIR 212 (258)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHH
T ss_pred CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH--HHHHHHH
Confidence 999999999999999999999999999999999999865 577788999999999999999996554 3678888
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.+.++...|+++.|...|+++++..
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999987
No 41
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.66 E-value=9e-14 Score=145.46 Aligned_cols=297 Identities=12% Similarity=0.032 Sum_probs=209.7
Q ss_pred HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC
Q psy8681 65 AMEEKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGE 142 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~ 142 (521)
.++..+|+++.|...|+ .|..+ ........+| ...+|..+|.++...|++++|...|++++...+.
T Consensus 59 ~~~~~~G~~~eAl~~~~------------kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 59 YLKHLKGQNEAALECLR------------KAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp HHHHHTTCHHHHHHHHH------------HHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHH------------HHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 57777888888877764 55555 4332114567 5788999999999999999999999999987431
Q ss_pred -----ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH--
Q psy8681 143 -----ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHE-- 215 (521)
Q Consensus 143 -----~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e-- 215 (521)
.+..+.++...+......+ .+.+++|...|++|+...|.+. .++..++...
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~--------------------~~~y~~A~~~~~kal~~~p~~~--~~~~~~~~~~~~ 184 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCG--------------------GNQNERAKVCFEKALEKKPKNP--EFTSGLAIASYR 184 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHC--------------------TTHHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHH
T ss_pred cccccchhhHHHHHHHHHHHHHHc--------------------cccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH
Confidence 1223455544433222221 1289999999999999999886 5666665543
Q ss_pred -HHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCchh-----HHHH
Q psy8681 216 -KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED----EGNADLIRETYERAIANIPPTK-----FAEL 285 (521)
Q Consensus 216 -~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~P~~~-----~a~l 285 (521)
...|..+.+... |++++..+|.+..+|..++..+.. .|+.++|..+|++++...|... .+.+
T Consensus 185 l~~~~~~~~al~~--------~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~ 256 (472)
T 4g1t_A 185 LDNWPPSQNAIDP--------LRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKF 256 (472)
T ss_dssp HHHSCCCCCTHHH--------HHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred hcCchHHHHHHHH--------HHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 345666666655 999999999999998888766554 4578899999999999988865 5777
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh-------------------cCChHHHHHHHHHHHhcCC-CH
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG-------------------QGERDKVRELHERLLERTV-HV 345 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~-------------------~g~~~~Ar~l~eral~~~~-~~ 345 (521)
+...|+++.|...|++++...|.+ ..+|...+..+.. .+.++.|...|++++...| ++
T Consensus 257 ~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 334 (472)
T 4g1t_A 257 YRRKDEPDKAIELLKKALEYIPNN--AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLF 334 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTC
T ss_pred HHHcCchHHHHHHHHHHHHhCCCh--HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchh
Confidence 889999999999999999865543 4455544443322 2346788888999988876 57
Q ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHH-HHHcCCHHHHHHHH
Q psy8681 346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEF-EAQHGDDESRAKLN 411 (521)
Q Consensus 346 ~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~f-E~~~G~~~~~~~v~ 411 (521)
.+|..++......|+ +++|...|++|+...+.+.. ...++..+..+ +...|+.+.+....
T Consensus 335 ~~~~~lg~~~~~~~~---~~~A~~~~~kaL~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~Ai~~y 395 (472)
T 4g1t_A 335 RVCSILASLHALADQ---YEEAEYYFQKEFSKELTPVA---KQLLHLRYGNFQLYQMKCEDKAIHHF 395 (472)
T ss_dssp CCHHHHHHHHHHTTC---HHHHHHHHHHHHHSCCCHHH---HHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred hhhhhHHHHHHHhcc---HHHHHHHHHHHHhcCCCChH---HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 788899999999888 99999999999988765432 22334444433 23457766554443
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.64 E-value=1.5e-14 Score=136.66 Aligned_cols=184 Identities=10% Similarity=0.064 Sum_probs=165.2
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..++.++...|++
T Consensus 38 ~~~~A~~~~~~~l~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~ 107 (243)
T 2q7f_A 38 DYEKAAEAFTKAIEENKEDA--IPYINFANLLSSVNELERALAF--------YDKALELDSSAATAYYGAGNVYVVKEMY 107 (243)
T ss_dssp ----CCTTHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCcchHHHHHHHHHHHHhccH
Confidence 99999999999999999876 7888888888899999999877 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
+.|...|++++...|... ++.++...|+++.|...|++++...+. ...+|..++.++...|+++.|..+|+++
T Consensus 108 ~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 108 KEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp HHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999998765 577788999999999999999996553 3578888999999999999999999999
Q ss_pred HhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 339 LERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 339 l~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+...| ++.+|..++.++...|+ ++.|...|++++...|++.
T Consensus 186 ~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~p~~~ 227 (243)
T 2q7f_A 186 TEQDPGHADAFYNAGVTYAYKEN---REKALEMLDKAIDIQPDHM 227 (243)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTC---TTHHHHHHHHHHHHCTTCH
T ss_pred HHhCcccHHHHHHHHHHHHHccC---HHHHHHHHHHHHccCcchH
Confidence 99986 68899999999999998 9999999999999999874
No 43
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.1e-13 Score=132.01 Aligned_cols=203 Identities=12% Similarity=-0.010 Sum_probs=142.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|..++..+...|+++.|..+|++++...| ....+|..++......| +++.|.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A~ 91 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP---SSADAHAALAVVFQTEM----------------------EPKLAD 91 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 67888999999999999999999999988854 35678888888877777 888898
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN--SNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~--~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
.+|++++...|... .+|..++......|+.+.+... |++++. .+|.+..+|..++..+...|++++|.
T Consensus 92 ~~~~~a~~~~~~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 161 (252)
T 2ho1_A 92 EEYRKALASDSRNA--RVLNNYGGFLYEQKRYEEAYQR--------LLEASQDTLYPERSRVFENLGLVSLQMKKPAQAK 161 (252)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHCcCcH--HHHHHHHHHHHHHhHHHHHHHH--------HHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888765 6777777777788888877766 888887 67777888888888888888888888
Q ss_pred HHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHH
Q psy8681 268 ETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVK 346 (521)
Q Consensus 268 ~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~ 346 (521)
..|++++...|... .+|..++.++...|+++.|..+|++++...| +..
T Consensus 162 ~~~~~~~~~~~~~~-------------------------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 210 (252)
T 2ho1_A 162 EYFEKSLRLNRNQP-------------------------------SVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR 210 (252)
T ss_dssp HHHHHHHHHCSCCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHH
T ss_pred HHHHHHHhcCcccH-------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 88888777766532 3344444444445555555555555554443 344
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+|..++.++...|+ .+.|..+|++++...|.+
T Consensus 211 ~~~~~~~~~~~~g~---~~~A~~~~~~~~~~~p~~ 242 (252)
T 2ho1_A 211 SLLLGIRLAKVFED---RDTAASYGLQLKRLYPGS 242 (252)
T ss_dssp HHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHccC---HHHHHHHHHHHHHHCCCC
Confidence 44444554444444 555555555555554443
No 44
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.64 E-value=2.2e-14 Score=138.21 Aligned_cols=217 Identities=11% Similarity=-0.016 Sum_probs=113.1
Q ss_pred cccchhhHHH-HhhhccCCC----C-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh
Q psy8681 89 DKERDREEED-ERKDEGDRD----S-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~----P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~ 162 (521)
.|+++.|... ++++ ... | ++..|..++..+...|+++.|...|++++...| .+..+|..++......|
T Consensus 18 ~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~- 91 (275)
T 1xnf_A 18 TLQQEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP---DMPEVFNYLGIYLTQAG- 91 (275)
T ss_dssp CHHHHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTT-
T ss_pred cchHHHHHHHHHHHH--hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHcc-
Confidence 3555666666 6666 442 2 245566666666666666666666666666543 24555666665555555
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..
T Consensus 92 ---------------------~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~a~~~ 140 (275)
T 1xnf_A 92 ---------------------NFDAAYEAFDSVLELDPTYN--YAHLNRGIALYYGGRDKLAQDD--------LLAFYQD 140 (275)
T ss_dssp ---------------------CHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHH
T ss_pred ---------------------CHHHHHHHHHHHHhcCcccc--HHHHHHHHHHHHhccHHHHHHH--------HHHHHHh
Confidence 66666666666666655554 4555555555555665555544 6666666
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCC--CcHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLD--MPELVWK 316 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~--~~~~lw~ 316 (521)
+|.+...+..+. +....|++++|...|.+++...|+.. .+.+....++.+.|...|..++...+.. ....+|.
T Consensus 141 ~~~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 219 (275)
T 1xnf_A 141 DPNDPFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNF 219 (275)
T ss_dssp CTTCHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHH
Confidence 665554333332 22334555555555555555554433 2223333444455555555554432100 0023444
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
..+.++...|++++|...|++++...|
T Consensus 220 ~la~~~~~~g~~~~A~~~~~~al~~~p 246 (275)
T 1xnf_A 220 YLGKYYLSLGDLDSATALFKLAVANNV 246 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence 444445555555555555555555444
No 45
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.63 E-value=7.1e-15 Score=144.82 Aligned_cols=259 Identities=12% Similarity=-0.021 Sum_probs=197.8
Q ss_pred hcccchhhHHH-HhhhccCCCC-C----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D----TTYGMRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEE 158 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~ 158 (521)
..|+++.|+.+ ++++ ...| + ..+|..++..+...|+++.|...|++++.... ..+....++..++....
T Consensus 17 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 94 (338)
T 3ro2_A 17 KSGDCRAGVSFFEAAV--QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK 94 (338)
T ss_dssp HTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence 44566666666 7888 7778 4 47899999999999999999999999998732 22223567777777777
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCC--------------
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGD-------------- 220 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~-------------- 220 (521)
..| +++.|...|++++...|... ...++..++.+....|+
T Consensus 95 ~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3ro2_A 95 VLG----------------------NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP 152 (338)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred Hcc----------------------CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence 777 99999999999998755431 12466667777777777
Q ss_pred ------hhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------
Q psy8681 221 ------RAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------- 281 (521)
Q Consensus 221 ------~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------- 281 (521)
.+.+... |++++.. .|....++..++..+...|++++|...|++++...|...
T Consensus 153 ~~a~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 224 (338)
T 3ro2_A 153 EDVRNALQAAVDL--------YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR 224 (338)
T ss_dssp HHHHHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHH--------HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 5555544 7777665 233456889999999999999999999999998755422
Q ss_pred ----HHHHHHHcCCHHHHHHHHHHHHcCCCC--C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HH
Q psy8681 282 ----FAELESLLGDMERARAIYELAISQPRL--D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VK 346 (521)
Q Consensus 282 ----~a~le~~~g~~e~Ar~ife~al~~~~~--~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~ 346 (521)
++.++...|+++.|...|+.++...+. + ....++...+.++...|+++.|...|++++...+ + ..
T Consensus 225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 304 (338)
T 3ro2_A 225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 304 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence 567788899999999999999873211 1 1145677778889999999999999999998753 2 55
Q ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 347 VWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 347 vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+|..++..+...|+ ++.|...|++|+...+..
T Consensus 305 ~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 305 ACWSLGNAYTALGN---HDQAMHFAEKHLEISREV 336 (338)
T ss_dssp HHHHHHHHHHHHTC---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHcCC---hHHHHHHHHHHHHHHHhh
Confidence 78889999999998 999999999999987753
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.63 E-value=5.3e-14 Score=135.50 Aligned_cols=222 Identities=13% Similarity=0.108 Sum_probs=189.3
Q ss_pred HcCChhHHHHHHHHHHHhcCCc-cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC
Q psy8681 122 QNGFVSGARKVYERAVEFFGEE-NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP 200 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~-~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P 200 (521)
..|+++.|...|++++...+.. +....+|..++......| +++.|...|++++...|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~A~~~~~~al~~~~ 74 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG----------------------LRALARNDFSQALAIRP 74 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc----------------------cHHHHHHHHHHHHHcCC
Confidence 3468899999999999874321 235778888888888887 99999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 201 KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 201 ~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
... .+|..++......|+.+.+... |++++..+|.+..+|..++.++...|++++|...|++++...|..
T Consensus 75 ~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 144 (275)
T 1xnf_A 75 DMP--EVFNYLGIYLTQAGNFDAAYEA--------FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144 (275)
T ss_dssp CCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred CcH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC
Confidence 876 7899999999999999999877 999999999999999999999999999999999999999999987
Q ss_pred h----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-----HHHHHHH
Q psy8681 281 K----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-----VKVWMNY 351 (521)
Q Consensus 281 ~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~y 351 (521)
. +..+....|+++.|...|..++...+.+. ..|. .+.+....++.+.|...|.+++...+. +.+|..+
T Consensus 145 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 221 (275)
T 1xnf_A 145 PFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYL 221 (275)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcch--HHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHH
Confidence 6 33445667999999999999988544332 2343 556667788899999999999887642 6889999
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
+.++...|+ ++.|...|++++...|.+
T Consensus 222 a~~~~~~g~---~~~A~~~~~~al~~~p~~ 248 (275)
T 1xnf_A 222 GKYYLSLGD---LDSATALFKLAVANNVHN 248 (275)
T ss_dssp HHHHHHTTC---HHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCC---HHHHHHHHHHHHhCCchh
Confidence 999999998 999999999999998865
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.63 E-value=1.3e-13 Score=128.20 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=142.0
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| ++..|..++..+...|+++.|..+|++++...| .+..+|..++......| ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~----------------------~~ 58 (225)
T 2vq2_A 4 ANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP---KNELAWLVRAEIYQYLK----------------------VN 58 (225)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcC----------------------Ch
Confidence 45 577888888888888888888888888888755 35677777777777777 88
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCC
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVN--SNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~--~~P~~~~~W~~y~~~~~~~g~ 262 (521)
+.|..+|++++...|.+. .+|..++.+.... |+.+.+... |++++. .+|.+..+|..++..+...|+
T Consensus 59 ~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 128 (225)
T 2vq2_A 59 DKAQESFRQALSIKPDSA--EINNNYGWFLCGRLNRPAESMAY--------FDKALADPTYPTPYIANLNKGICSAKQGQ 128 (225)
T ss_dssp HHHHHHHHHHHHHCTTCH--HHHHHHHHHHHTTTCCHHHHHHH--------HHHHHTSTTCSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCcHHHHHHH--------HHHHHcCcCCcchHHHHHHHHHHHHHcCC
Confidence 888888888888877765 6777777777777 887777766 788877 556667788888888877777
Q ss_pred HHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 263 ADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
+++|...|++++...|.+. .+|..++..+...|+++.|..+|++++...
T Consensus 129 ~~~A~~~~~~~~~~~~~~~-------------------------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 129 FGLAEAYLKRSLAAQPQFP-------------------------------PAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp HHHHHHHHHHHHHHSTTCH-------------------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCc-------------------------------hHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7777777777777666432 344444555555555555555555555554
Q ss_pred C--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 343 V--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 343 ~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
| ++.+|...+.++...|+ .+.|..+++.++...|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~---~~~a~~~~~~~~~~~p~~ 215 (225)
T 2vq2_A 178 EVLQADDLLLGWKIAKALGN---AQAAYEYEAQLQANFPYS 215 (225)
T ss_dssp CSCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTC
T ss_pred CCCCHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHhCCCC
Confidence 4 34444444444455554 555555555555555544
No 48
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.2e-13 Score=131.57 Aligned_cols=198 Identities=14% Similarity=0.116 Sum_probs=153.4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.+|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...|++++...|...
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 109 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVP--------LRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLN 109 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHH--------HHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHH
Confidence 6677777777788888888776 8888888888888888888888888888899999988888888654
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHc--CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAIS--QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMS 357 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~--~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~ 357 (521)
++.++...|+++.|..+|++++. ..+ ....+|..++..+...|+++.|..+|++++...| ++.+|..++..+..
T Consensus 110 ~la~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 110 NYGGFLYEQKRYEEAYQRLLEASQDTLYP--ERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYK 187 (252)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhCccCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence 56677788999999999999888 333 2467888888999999999999999999999887 68899999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchhh
Q psy8681 358 SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418 (521)
Q Consensus 358 ~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~v 418 (521)
.|+ ++.|..+|++++...|.+.. ....+...+........-....+.+....|...
T Consensus 188 ~g~---~~~A~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 188 ERE---YVPARQYYDLFAQGGGQNAR--SLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp TTC---HHHHHHHHHHHHTTSCCCHH--HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred cCC---HHHHHHHHHHHHHhCcCcHH--HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 998 99999999999998887643 223333333333222222334455555555443
No 49
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=2.1e-14 Score=147.34 Aligned_cols=259 Identities=10% Similarity=-0.043 Sum_probs=203.3
Q ss_pred hcccchhhHHH-HhhhccCCCC-Ch----hhHHHHHHHHHHcCChhHHHHHHHHHHHhc---CCccccHHHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DT----TYGMRELVFEEQNGFVSGARKVYERAVEFF---GEENLDEKLFIAFAKFEE 158 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~----~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~---~~~~~~~~lw~~~a~~e~ 158 (521)
..|+++.|+.+ ++++ ...| +. .+|..++.++...|+++.|...|++++... ++.+....+|..++.+..
T Consensus 60 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 60 NAGDCRAGVAFFQAAI--QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHH--HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 34556666666 6888 7788 43 589999999999999999999999999873 222234667777888777
Q ss_pred hhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCC--------------
Q psy8681 159 GQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGD-------------- 220 (521)
Q Consensus 159 ~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~-------------- 220 (521)
..| +++.|...|++++...+. .....++..++.+....|+
T Consensus 138 ~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a 195 (411)
T 4a1s_A 138 VMG----------------------RFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDV 195 (411)
T ss_dssp HTT----------------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHH
T ss_pred HCC----------------------CHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhh
Confidence 777 999999999999987432 1123577777777778888
Q ss_pred ---hhhHHHHHHhhHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----------
Q psy8681 221 ---RAGIEDVIVSKRKFQYEEEVNSN------PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---------- 281 (521)
Q Consensus 221 ---~~~a~~~i~~krr~~ye~al~~~------P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---------- 281 (521)
.+.+... |++++... |....+|..++.++...|++++|...|++++...|...
T Consensus 196 ~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (411)
T 4a1s_A 196 KEALTRAVEF--------YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS 267 (411)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hHHHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 6666554 77777653 33456899999999999999999999999999766432
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCC--C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------CHHHHH
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRL--D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-------HVKVWM 349 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~--~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-------~~~vwi 349 (521)
++.++...|+++.|...|++++...+. + ....+|..++.++...|+++.|..+|++++...+ ...++.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 347 (411)
T 4a1s_A 268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW 347 (411)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 567788999999999999999873221 1 1246777888889999999999999999998752 255788
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.++.++...|+ ++.|...|++|+...+..
T Consensus 348 ~la~~~~~~g~---~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 348 SLGNAHSAIGG---HERALKYAEQHLQLAXXX 376 (411)
T ss_dssp HHHHHHHHTTC---HHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHhcc---HHHHHHHHHHHHHHHhhc
Confidence 89999999998 999999999999998764
No 50
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=9.2e-14 Score=126.35 Aligned_cols=163 Identities=15% Similarity=0.157 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.+|..++......|+.+.|... |++++..+|+++.+|..++.++...|+++.|...+.+++...|...
T Consensus 6 ~iy~~lG~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 6 TIYMDIGDKKRTKGDFDGAIRA--------YKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 7899999999999999999977 9999999999999999999999999999999999999999999866
Q ss_pred -HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcC
Q psy8681 282 -FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSG 359 (521)
Q Consensus 282 -~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g 359 (521)
.+.+....++++.|...+.+++...|. ...+|...+..+...|++++|...|+++++..| ++.+|..++..+...|
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g 155 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKG 155 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCC
Confidence 567788899999999999999996664 367888999999999999999999999999997 6899999999999999
Q ss_pred CchhhHHHHHHHHHHHHHhccc
Q psy8681 360 DEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 360 ~~~~~~~AR~vferAl~~~~~~ 381 (521)
+ +++|...|++|++..|++
T Consensus 156 ~---~~~A~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 156 L---RDEAVKYFKKALEKEEKK 174 (184)
T ss_dssp C---HHHHHHHHHHHHHTTHHH
T ss_pred C---HHHHHHHHHHHHhCCccC
Confidence 8 999999999999998864
No 51
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.61 E-value=7e-14 Score=137.64 Aligned_cols=272 Identities=10% Similarity=-0.002 Sum_probs=213.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD-EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~-~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
...|...|..+...|+++.|..+|++++...|.++.. ..++..++......| +++.|
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A 62 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH----------------------DYAKA 62 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcC----------------------CHHHH
Confidence 4568888999999999999999999999986643211 466777777777777 99999
Q ss_pred HHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~~ 258 (521)
...|++++...+. .....++..++......|+.+.+... |++++...|.. ..++..++.++.
T Consensus 63 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 63 LEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC--------CQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHH--------HHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 9999999876321 12236777888888899999999877 88888875543 348899999999
Q ss_pred HcCC--------------------HHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 259 DEGN--------------------ADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 259 ~~g~--------------------~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
..|+ ++.|...|++++...+... ++.++...|+++.|...|++++...+
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 9999 9999999999887632211 56777889999999999999987321
Q ss_pred C----CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 308 L----DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 308 ~----~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
. .....+|..++.++...|+++.|..+|++++...+ + ..++..++..+...|+ ++.|...|++|+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~ 291 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHLA 291 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHH
Confidence 1 01134777778888999999999999999998753 1 6678889999999998 9999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 377 ALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..+..+.......++.....+-...|+.+.+.....+.
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 292 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 98776554445556666676777889999888887665
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.61 E-value=8.4e-14 Score=142.81 Aligned_cols=272 Identities=12% Similarity=-0.000 Sum_probs=214.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc-cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL-DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~-~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
...+...+..+...|+++.|+..|++++...|.++. ...+|..++......| +++.|
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g----------------------~~~~A 105 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLG----------------------DYNKA 105 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCC----------------------CHHHH
Confidence 556778899999999999999999999998664321 1357777888777777 99999
Q ss_pred HHHHHHHHhcCC----hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIP----KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P----~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~ 258 (521)
...|++++.... ......++..++.+....|+.+.+... |++++.. .|....+|..++.++.
T Consensus 106 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 177 (411)
T 4a1s_A 106 MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAIC--------CERHLTLARQLGDRLSEGRALYNLGNVYH 177 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHhhchHHHHHHHHHHHHHHH
Confidence 999999998721 112236788888888899999999877 8888887 4566779999999999
Q ss_pred HcCC-----------------HHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCC--
Q psy8681 259 DEGN-----------------ADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRL-- 308 (521)
Q Consensus 259 ~~g~-----------------~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~-- 308 (521)
..|+ ++.|...|++++...+... ++.++...|+++.|...|++++...+.
T Consensus 178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 257 (411)
T 4a1s_A 178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG 257 (411)
T ss_dssp HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence 9999 9999999999987643211 567788999999999999999874211
Q ss_pred C--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 309 D--MPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 309 ~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
+ ....++..++.++...|+++.|..+|++++...+. ..+|..++.++...|+ ++.|...|++++...+
T Consensus 258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~~~ 334 (411)
T 4a1s_A 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHE---FNTAIEYHNRHLAIAQ 334 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHH
Confidence 1 11236777788899999999999999999987531 5678889999999998 9999999999999987
Q ss_pred cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 380 ASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 380 ~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
..++.......+..+..+-...|+.+.+.....+.
T Consensus 335 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 369 (411)
T 4a1s_A 335 ELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH 369 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 76544444556666666666889988876666554
No 53
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.61 E-value=9.7e-14 Score=126.16 Aligned_cols=169 Identities=17% Similarity=0.127 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++.+|..+|..+...|++++|...|+++++..| .+..+|..++......| +++.|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~----------------------~~~~a 58 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP---NNVETLLKLGKTYMDIG----------------------LPNDA 58 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC----------------------CHHHH
Confidence 467788888888888888888888888888854 46777888888777777 88888
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...+..++...|... ..+..++.+....++.+.+... |.+++..+|.+..+|..++..+...|++++|..
T Consensus 59 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~--------~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 128 (184)
T 3vtx_A 59 IESLKKFVVLDTTSA--EAYYILGSANFMIDEKQAAIDA--------LQRAIALNTVYADAYYKLGLVYDSMGEHDKAIE 128 (184)
T ss_dssp HHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCchhH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCccchHHHHHHHHHHHHhCCchhHHH
Confidence 888888888887766 6677777777777877777765 888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 269 TYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 269 ~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.|++++...|.+. .+|...+..+...|++++|...|+++++..|
T Consensus 129 ~~~~~l~~~p~~~-------------------------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 129 AYEKTISIKPGFI-------------------------------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp HHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHhcchhh-------------------------------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 8888777776532 3455555555555555555555555555544
No 54
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.60 E-value=4.4e-13 Score=132.37 Aligned_cols=234 Identities=7% Similarity=-0.038 Sum_probs=153.5
Q ss_pred hcCChhhhhhhcC-----CCcH-----------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHH
Q psy8681 69 KQGNKIGEEGANK-----ENEE-----------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARK 131 (521)
Q Consensus 69 ~~gn~~~Ar~ife-----~P~~-----------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~ 131 (521)
..|++..|+..++ .|++ ++.+|+++.|+.. +.. ..|.......++.++...|+.+.|..
T Consensus 11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A~~ 86 (291)
T 3mkr_A 11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAIVA 86 (291)
T ss_dssp HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHHHH
Confidence 4566666666554 2332 5566666666655 431 12356666777777777777777777
Q ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHH
Q psy8681 132 VYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAY 211 (521)
Q Consensus 132 vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~ 211 (521)
.|++++.... +|.++.+++.++......| +++.|..+|++ |.+. .++...
T Consensus 87 ~l~~ll~~~~-~P~~~~~~~~la~~~~~~g----------------------~~~~Al~~l~~-----~~~~--~~~~~l 136 (291)
T 3mkr_A 87 ELDREMSRSV-DVTNTTFLLMAASIYFYDQ----------------------NPDAALRTLHQ-----GDSL--ECMAMT 136 (291)
T ss_dssp HHHHHHHSCC-CCSCHHHHHHHHHHHHHTT----------------------CHHHHHHHHTT-----CCSH--HHHHHH
T ss_pred HHHHHHhccc-CCCCHHHHHHHHHHHHHCC----------------------CHHHHHHHHhC-----CCCH--HHHHHH
Confidence 7777775410 1235666777777666666 77777777766 4443 566666
Q ss_pred HHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHH
Q psy8681 212 TIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD--YLRLLEDEGNADLIRETYERAIANIPPTK-----FAE 284 (521)
Q Consensus 212 ~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~--y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~ 284 (521)
+.+..+.|+.+.|... |++++..+|.+....+. ++.+....|++++|..+|++++...|.+. .+.
T Consensus 137 ~~~~~~~g~~~~A~~~--------l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 137 VQILLKLDRLDLARKE--------LKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp HHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHH--------HHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 6667777777777665 77777777776533332 33444455677777777777777777654 455
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHH-HHHHHHHHHhcCCCHH
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDK-VRELHERLLERTVHVK 346 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~-Ar~l~eral~~~~~~~ 346 (521)
+...+|+++.|...|++++...|. ...+|..++.+....|+.+. +..++++++...|+..
T Consensus 209 ~~~~~g~~~eA~~~l~~al~~~p~--~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 209 CHMAQGRWEAAEGVLQEALDKDSG--HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 566777777777777777775554 35678888888888898865 6789999999988543
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=3.5e-13 Score=125.27 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---- 281 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~---- 281 (521)
.+|..++......|+.+.+... |++++..+|.+..+|..++..+...|++++|...|++++...|...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 80 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATAS--------IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHH
Confidence 4444445555555555555544 5555555555555666666666666666666666666665555443
Q ss_pred -HHHHHHHc-CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc
Q psy8681 282 -FAELESLL-GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS 358 (521)
Q Consensus 282 -~a~le~~~-g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~ 358 (521)
++.++... |+++.|..+|++++..+.......+|..++..+...|+++.|..+|++++...| ++.+|..++..+...
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHc
Confidence 34455556 666666666666666211112357888888899999999999999999999987 689999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHhc-cchh
Q psy8681 359 GDEDSVSLARRVFERANQALK-ASSE 383 (521)
Q Consensus 359 g~~~~~~~AR~vferAl~~~~-~~~~ 383 (521)
|+ ++.|..+|++++...| .+..
T Consensus 161 ~~---~~~A~~~~~~~~~~~~~~~~~ 183 (225)
T 2vq2_A 161 GQ---LGDADYYFKKYQSRVEVLQAD 183 (225)
T ss_dssp TC---HHHHHHHHHHHHHHHCSCCHH
T ss_pred CC---HHHHHHHHHHHHHhCCCCCHH
Confidence 98 9999999999999998 6543
No 56
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=1.4e-13 Score=140.03 Aligned_cols=273 Identities=10% Similarity=-0.003 Sum_probs=215.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD-EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~-~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
+...|...|..+...|+++.|...|++++...|.++.. ..+|..++......| +++.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~ 65 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLH----------------------DYAK 65 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTT----------------------CHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhc----------------------CHHH
Confidence 57789999999999999999999999999986643211 467777888777777 9999
Q ss_pred HHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLL 257 (521)
Q Consensus 188 Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~ 257 (521)
|...|++++...+. .....++..++......|+.+.+... |++++...|.. ..+|..++.++
T Consensus 66 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~l~~~~ 137 (406)
T 3sf4_A 66 ALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC--------CQRHLDISRELNDKVGEARALYNLGNVY 137 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 99999999876321 12236777888888899999999877 88888876643 45899999999
Q ss_pred HHcCC--------------------HHHHHHHHHHHHHcCCch---h--------HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 258 EDEGN--------------------ADLIRETYERAIANIPPT---K--------FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 258 ~~~g~--------------------~~~Ar~~~erAl~~~P~~---~--------~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
...|+ ++.|...|++++...+.. . .+.++...|+++.|...|++++...
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 138 HAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 99999 999999999998863221 1 5677888999999999999998732
Q ss_pred CC-C---CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-C------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Q psy8681 307 RL-D---MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-H------VKVWMNYAQFEMSSGDEDSVSLARRVFERAN 375 (521)
Q Consensus 307 ~~-~---~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl 375 (521)
+. . ....+|...+..+...|+++.|..+|++++...+ . ..++..++..+...|+ ++.|...|++|+
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~ 294 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---YEKAIDYHLKHL 294 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCc---HHHHHHHHHHHH
Confidence 11 1 1134677778888999999999999999998753 1 6678889999999998 999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 376 QALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 376 ~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
...+..++......++.....+-...|+.+.+.....+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 998776554444556666666666789998888877665
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.59 E-value=1.5e-12 Score=126.13 Aligned_cols=226 Identities=10% Similarity=-0.008 Sum_probs=191.8
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh----hhhhccccchhhHHHHHhhhhh
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG----QREKYGDRAGIEDVIVSKRKFQ 181 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~----~~~~~~~~~~~~~~~l~~~~~~ 181 (521)
.| ++..|..++..+...|++++|...|++++.. .++..+..++.+... .+
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~~~~-------------------- 56 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACDL-----KENSGCFNLGVLYYQGQGVEK-------------------- 56 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCC--------------------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCcCC--------------------
Confidence 35 6889999999999999999999999999983 356778888887776 66
Q ss_pred hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 182 ~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
+++.|...|+++++... . ..+..++.+... .|+.+.+... |++++.. .++.+|..++.++
T Consensus 57 --~~~~A~~~~~~a~~~~~--~--~a~~~lg~~~~~g~~~~~~~~~A~~~--------~~~a~~~--~~~~a~~~lg~~~ 120 (273)
T 1ouv_A 57 --NLKKAASFYAKACDLNY--S--NGCHLLGNLYYSGQGVSQNTNKALQY--------YSKACDL--KYAEGCASLGGIY 120 (273)
T ss_dssp --CHHHHHHHHHHHHHTTC--H--HHHHHHHHHHHHTSSSCCCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHHHHCCC--H--HHHHHHHHHHhCCCCcccCHHHHHHH--------HHHHHHc--CCccHHHHHHHHH
Confidence 99999999999998742 2 567777777777 8888888876 9999987 4899999999999
Q ss_pred HH----cCCHHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh--
Q psy8681 258 ED----EGNADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG-- 324 (521)
Q Consensus 258 ~~----~g~~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~-- 324 (521)
.. .+++++|...|++|+...+... ++.++.. .++++.|...|++++... +...+..++.++..
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~g~ 196 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK----DSPGCFNAGNMYHHGE 196 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTC
T ss_pred HcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCC
Confidence 99 9999999999999999876544 5666777 899999999999999864 24577778888888
Q ss_pred --cCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHHhccc
Q psy8681 325 --QGERDKVRELHERLLERTVHVKVWMNYAQFEMS----SGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 325 --~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~----~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
.+++++|...|++++...+ +..+..++.++.. .++ +++|..+|++|+...|..
T Consensus 197 ~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~~---~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 197 GATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTRN---EKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSCC---STTHHHHHHHHHHHTCHH
T ss_pred CCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCcccC---HHHHHHHHHHHHHcCCHH
Confidence 9999999999999998865 7888889998887 666 999999999999987754
No 58
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.55 E-value=1.1e-13 Score=146.24 Aligned_cols=216 Identities=7% Similarity=-0.073 Sum_probs=180.7
Q ss_pred ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCCh-hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 90 KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFV-SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~-~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
+.++.+... +... ...| +...|..+|..+...|++ ++|...|++|+...| .+..+|..++......|
T Consensus 82 ~~~~~al~~l~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g----- 151 (474)
T 4abn_A 82 EEMEKTLQQMEEVL--GSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP---ELVEAWNQLGEVYWKKG----- 151 (474)
T ss_dssp HHHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHh--ccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHcC-----
Confidence 457778888 8888 8888 799999999999999999 999999999999965 46789999999998888
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHc---------CChhhHHHHHHhhHHHHHH
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKY---------GDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~---------G~~~~a~~~i~~krr~~ye 237 (521)
+++.|...|++++...|. . ..|..++.+.... |+.+.|... |+
T Consensus 152 -----------------~~~~A~~~~~~al~~~p~-~--~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~--------~~ 203 (474)
T 4abn_A 152 -----------------DVTSAHTCFSGALTHCKN-K--VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQ--------AK 203 (474)
T ss_dssp -----------------CHHHHHHHHHHHHTTCCC-H--HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHH--------HH
T ss_pred -----------------CHHHHHHHHHHHHhhCCC-H--HHHHHHHHHHHHhccCChhhhhhhHHHHHHH--------HH
Confidence 999999999999999998 3 7888888888887 777777766 99
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDE--------GNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD 309 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~--------g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~ 309 (521)
+++..+|.+..+|..++..+... |++++|...|++|+...|.. +.
T Consensus 204 ~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~--------------------------~~- 256 (474)
T 4abn_A 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA--------------------------SS- 256 (474)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG--------------------------GG-
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc--------------------------cc-
Confidence 99999999999999999999887 77777777777777766510 01
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 310 MPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 310 ~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
...+|..++.++...|++++|...|++++...| ++.+|..++..+...|+ ++.|...+.+.
T Consensus 257 -~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~---~~eAi~~~~~~ 318 (474)
T 4abn_A 257 -NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR---LTSLLESKGKT 318 (474)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH---HHHHHHHTTTC
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HHHHHHHhccc
Confidence 246777788888888888888888888888886 57788888888888776 88888777665
No 59
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.53 E-value=1.6e-13 Score=117.99 Aligned_cols=114 Identities=22% Similarity=0.388 Sum_probs=96.3
Q ss_pred hhCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHH
Q psy8681 241 NSNPNNYDAWFDYLRLLEDEGNA------DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELV 314 (521)
Q Consensus 241 ~~~P~~~~~W~~y~~~~~~~g~~------~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~l 314 (521)
...|+||+.|+.|+.+++..|++ ++.+++|+||+...|+... + .......+
T Consensus 7 ~~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~-------~----------------~wrrYI~L 63 (161)
T 4h7y_A 7 MMMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY-------G----------------QNESFARI 63 (161)
T ss_dssp ---CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG-------T----------------TCHHHHHH
T ss_pred eeCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc-------c----------------cHHHHHHH
Confidence 45899999999999999999999 9999999999999998530 0 01113458
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
|..|+.|+ ..++.++||++|+.|+..+. ..++|+.||+||.++|+ +.+||.++.+|+..+|..
T Consensus 64 WIrYA~~~-ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgn---l~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 64 QVRFAELK-AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGN---VKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HHHHHHHH-HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBC
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccc---HHHHHHHHHHHhccCCCc
Confidence 99998885 55999999999999998864 69999999999999999 999999999999999875
No 60
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.50 E-value=7.6e-12 Score=117.77 Aligned_cols=202 Identities=10% Similarity=0.035 Sum_probs=154.0
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|...|..+...|++++|...|++++...|. .+..+|...+......| +++.|
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~~~~~~~~~~~~~----------------------~~~~A 61 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--QDSVTAYNCGVCADNIK----------------------KYKEA 61 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--CCcHHHHHHHHHHHHhh----------------------cHHHH
Confidence 6789999999999999999999999999999651 35677777888888887 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcC
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-------DAWFDYLRLLEDEG 261 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-------~~W~~y~~~~~~~g 261 (521)
...|++++...|... .+|..++......|+.+.+... |++++..+|.++ .+|..++..+...|
T Consensus 62 ~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~ 131 (228)
T 4i17_A 62 ADYFDIAIKKNYNLA--NAYIGKSAAYRDMKNNQEYIAT--------LTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAG 131 (228)
T ss_dssp HHHHHHHHHTTCSHH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCcchH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhc
Confidence 999999999999876 7899999999999999999877 999999999999 66888888888889
Q ss_pred CHHHHHHHHHHHHHcCCc--hh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q psy8681 262 NADLIRETYERAIANIPP--TK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL 334 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~--~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l 334 (521)
++++|...|++|+...|. .. ++.++. ..+..+++.+....+.. ...+. .......+.+++|...
T Consensus 132 ~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-----~~~~~~~~~a~~~~~~~--~~~~~--~~~~~~~~~~~~A~~~ 202 (228)
T 4i17_A 132 NIEKAEENYKHATDVTSKKWKTDALYSLGVLFY-----NNGADVLRKATPLASSN--KEKYA--SEKAKADAAFKKAVDY 202 (228)
T ss_dssp CHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-----HHHHHHHHHHGGGTTTC--HHHHH--HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH-----HHHHHHHHHHHhcccCC--HHHHH--HHHHHHHHHHHHHHHH
Confidence 999999999999988887 43 222222 33444556665543322 11121 1223345667777777
Q ss_pred HHHHHhcCC-CHHHHHHHHH
Q psy8681 335 HERLLERTV-HVKVWMNYAQ 353 (521)
Q Consensus 335 ~eral~~~~-~~~vwi~ya~ 353 (521)
|+++++..| ++.+...++.
T Consensus 203 ~~~a~~l~p~~~~~~~~l~~ 222 (228)
T 4i17_A 203 LGEAVTLSPNRTEIKQMQDQ 222 (228)
T ss_dssp HHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhhcCCCCHHHHHHHHH
Confidence 777777766 4555444443
No 61
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=133.59 Aligned_cols=243 Identities=13% Similarity=0.090 Sum_probs=178.5
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcC-----CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFG-----EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~-----~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
..+| ...+|..++..+...|+++.|..+|++++.... ..+....++..++......|
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g----------------- 83 (311)
T 3nf1_A 21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------------- 83 (311)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-----------------
T ss_pred CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-----------------
Confidence 5566 588999999999999999999999999998631 12334677778888887777
Q ss_pred hhhhhhHHHHHHHHHHHHhcC-----Ch-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--------C
Q psy8681 179 KFQYEEHERARVIYKYALDHI-----PK-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--------P 244 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~-----P~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--------P 244 (521)
+++.|..+|++++... +. .....++..++......|+.+.+... |++++... |
T Consensus 84 -----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 84 -----KYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL--------CKRALEIREKVLGKDHP 150 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHHHHHHCTTCH
T ss_pred -----CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHH--------HHHHHHHHHHhcCCCCh
Confidence 9999999999999873 11 12236788888888899999998877 88888763 5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCC----
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIAN--------IPPTK-----FAELESLLGDMERARAIYELAISQPR---- 307 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--------~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~---- 307 (521)
....+|..++.++...|++++|...|++++.. .|... ++.++...|+++.|...|++++...+
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 230 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF 230 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence 66788999999999999999999999999987 33322 57788899999999999999986210
Q ss_pred --C-CCcHHHHHHHH------HHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 308 --L-DMPELVWKAYI------DFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 308 --~-~~~~~lw~~yi------~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
. .....+|.... ......+.+..+...|..++...| .+.+|..++..+...|+ ++.|..+|++|+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~l 307 (311)
T 3nf1_A 231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGK---FEAAETLEEAAMRS 307 (311)
T ss_dssp C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHH
Confidence 0 00112333322 233445677778888888887765 57899999999999999 99999999999998
Q ss_pred hcc
Q psy8681 378 LKA 380 (521)
Q Consensus 378 ~~~ 380 (521)
.|.
T Consensus 308 ~~~ 310 (311)
T 3nf1_A 308 RKQ 310 (311)
T ss_dssp HC-
T ss_pred hhc
Confidence 764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.5e-12 Score=137.54 Aligned_cols=184 Identities=12% Similarity=0.053 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
.++.+...++.++...|... .+|..++......|+. +.|... |++++..+|.+..+|..++.++...|+
T Consensus 83 ~~~~al~~l~~~~~~~~~~a--~~~~~lg~~~~~~g~~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~g~ 152 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEA--QALMLKGKALNVTPDYSPEAEVL--------LSKAVKLEPELVEAWNQLGEVYWKKGD 152 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCH--HHHHHHHHHHTSSSSCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhccCchhH--HHHHHHHHHHHhccccHHHHHHH--------HHHHHhhCCCCHHHHHHHHHHHHHcCC
Confidence 57788888888888777665 7888888888899999 999877 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh----HHHHHHHc---------CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc----
Q psy8681 263 ADLIRETYERAIANIPPTK----FAELESLL---------GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ---- 325 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~----~a~le~~~---------g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~---- 325 (521)
+++|...|++|+...|... ++.++..+ |+++.|...|++++...|. ...+|..++..+...
T Consensus 153 ~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~~~~~~~~~~ 230 (474)
T 4abn_A 153 VTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL--DGRSWYILGNAYLSLYFNT 230 (474)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999843 56677778 9999999999999997664 367899999998888
Q ss_pred ----CChHHHHHHHHHHHhcCC----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 326 ----GERDKVRELHERLLERTV----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 326 ----g~~~~Ar~l~eral~~~~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
|++++|...|++++...| ++.+|..++..+...|+ ++.|...|++|+...|.+.
T Consensus 231 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~l~p~~~ 292 (474)
T 4abn_A 231 GQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES---YGEALEGFSQAAALDPAWP 292 (474)
T ss_dssp TCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCTTCH
T ss_pred ccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCH
Confidence 999999999999999887 68999999999999998 9999999999999999874
No 63
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=8.8e-13 Score=145.96 Aligned_cols=165 Identities=19% Similarity=0.183 Sum_probs=145.1
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..+| ++..|..+|.++...|++++|...|++|++..| .+..+|..++......|
T Consensus 3 gs~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P---~~~~a~~nLg~~l~~~g---------------------- 57 (723)
T 4gyw_A 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP---EFAAAHSNLASVLQQQG---------------------- 57 (723)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT----------------------
T ss_pred CCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----------------------
Confidence 3468 688999999999999999999999999999865 46788999999988888
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
++++|...|++||+..|... ..|..++......|+.+.|... |+++|..+|.+..+|..++.++...|++
T Consensus 58 ~~~eA~~~~~~Al~l~P~~~--~a~~nLg~~l~~~g~~~~A~~~--------~~kAl~l~P~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 58 KLQEALMHYKEAIRISPTFA--DAYSNMGNTLKEMQDVQGALQC--------YTRAIQINPAFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 99999999999999999876 7888999999999999988877 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~ 304 (521)
++|...|++|++..|... ++.++..+|+++.|...|++++.
T Consensus 128 ~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999865 56777888999999888888875
No 64
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=1.6e-12 Score=143.90 Aligned_cols=170 Identities=15% Similarity=0.105 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a 224 (521)
.++.+|..++.....+| ++++|...|++||+..|... ..|..++....+.|+.+.|
T Consensus 7 ~~a~al~nLG~~~~~~G----------------------~~~eAi~~~~kAl~l~P~~~--~a~~nLg~~l~~~g~~~eA 62 (723)
T 4gyw_A 7 THADSLNNLANIKREQG----------------------NIEEAVRLYRKALEVFPEFA--AAHSNLASVLQQQGKLQEA 62 (723)
T ss_dssp HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHH
Confidence 34556666666666665 66666666666666666654 5666666666666666666
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHc
Q psy8681 225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 225 ~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~ 304 (521)
... |+++|..+|.+..+|..++.++...|++++|...|++|++..|..
T Consensus 63 ~~~--------~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~------------------------ 110 (723)
T 4gyw_A 63 LMH--------YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF------------------------ 110 (723)
T ss_dssp HHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------------------------
T ss_pred HHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------------------------
Confidence 655 666666666666666666666666666666666666666655542
Q ss_pred CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 305 ~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
...|..++..+...|++++|...|+++++..| ++.+|..++..+...|+ ++.|...|++++...++
T Consensus 111 -------~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~---~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 111 -------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD---WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp -------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC---CTTHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc---HHHHHHHHHHHHHhChh
Confidence 45666667777777777777777777777776 57777777777777777 77777777777776654
No 65
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.48 E-value=3.2e-11 Score=116.73 Aligned_cols=207 Identities=12% Similarity=0.012 Sum_probs=174.1
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh---
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG--- 159 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~--- 159 (521)
.|+++.|... ++++ . | ++..|..++.++.. .+++++|...|++++.. .++..+..++.+...
T Consensus 19 ~~~~~~A~~~~~~a~--~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~~~~a~~~lg~~~~~g~~ 89 (273)
T 1ouv_A 19 EKDFTQAKKYFEKAC--D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----NYSNGCHLLGNLYYSGQG 89 (273)
T ss_dssp TTCHHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhCCCC
Confidence 4555566666 6888 5 6 68899999999999 99999999999999987 257788888888876
Q ss_pred -hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHH
Q psy8681 160 -QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 160 -~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~ 234 (521)
.+ +++.|...|+++++.. +. ..+..++.+... .|+.+.+...
T Consensus 90 ~~~----------------------~~~~A~~~~~~a~~~~--~~--~a~~~lg~~~~~~~~~~~~~~~A~~~------- 136 (273)
T 1ouv_A 90 VSQ----------------------NTNKALQYYSKACDLK--YA--EGCASLGGIYHDGKVVTRDFKKAVEY------- 136 (273)
T ss_dssp SCC----------------------CHHHHHHHHHHHHHTT--CH--HHHHHHHHHHHHCSSSCCCHHHHHHH-------
T ss_pred ccc----------------------CHHHHHHHHHHHHHcC--Cc--cHHHHHHHHHHcCCCcccCHHHHHHH-------
Confidence 66 9999999999999874 22 577778888877 8898888877
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLED----EGNADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAI 303 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al 303 (521)
|++++... +..++..++.++.. .++.++|...|++|+...+... ++.++.. .++++.|...|++++
T Consensus 137 -~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 137 -FTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp -HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred -HHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 99999875 78899999999998 8999999999999999865443 5777888 999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHHHHHhcCCC
Q psy8681 304 SQPRLDMPELVWKAYIDFEVG----QGERDKVRELHERLLERTVH 344 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar~l~eral~~~~~ 344 (521)
...+ ...+..++.++.. .+++++|...|++++...|.
T Consensus 214 ~~~~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 214 ELEN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HTTC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hCCC----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 8753 4577777888888 89999999999999998763
No 66
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.46 E-value=9.4e-11 Score=123.93 Aligned_cols=290 Identities=9% Similarity=-0.019 Sum_probs=211.0
Q ss_pred HHHHH--HHHHh----cCChhhhhhhcC------CCcH-------HHh----cccchhhHHH-HhhhccCCCCChhhHHH
Q psy8681 60 KAWKK--AMEEK----QGNKIGEEGANK------ENEE-------EER----DKERDREEED-ERKDEGDRDSDTTYGMR 115 (521)
Q Consensus 60 ~~W~~--~~e~~----~gn~~~Ar~ife------~P~~-------e~r----~g~~e~Ar~~-eral~~~~~P~~~~W~~ 115 (521)
..++. .++.. .++++.|...|+ .|.. +.. .++++.|... ++++ .. .++..+..
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~~-~~~~a~~~ 152 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAA--EQ-GRDSGQQS 152 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HC-CCHHHHHH
Confidence 44554 67777 888888888888 2322 444 5688888888 8887 43 26778888
Q ss_pred HHHHHHH----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh----hhhhccccchh-----------hHHHHH
Q psy8681 116 ELVFEEQ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG----QREKYGDRAGI-----------EDVIVS 176 (521)
Q Consensus 116 ~a~~e~~----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~----~~~~~~~~~~~-----------~~~~l~ 176 (521)
++.++.. .++++.|...|+++++. .++..+..++.+... .+ .+...... ....++
T Consensus 153 Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~~~lg 226 (490)
T 2xm6_A 153 MGDAYFEGDGVTRDYVMAREWYSKAAEQ-----GNVWSCNQLGYMYSRGLGVER-NDAISAQWYRKSATSGDELGQLHLA 226 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHhcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8888887 67888999999998875 245667777766554 11 11111100 011122
Q ss_pred hhhhh----hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 177 KRKFQ----YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 177 ~~~~~----~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
..+.. .++++.|...|+++++..+. ..+..++.+... .++.+.+... |++++.. .+++
T Consensus 227 ~~y~~g~g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~y~~g~~~~~d~~~A~~~--------~~~a~~~--~~~~ 292 (490)
T 2xm6_A 227 DMYYFGIGVTQDYTQSRVLFSQSAEQGNS----IAQFRLGYILEQGLAGAKEPLKALEW--------YRKSAEQ--GNSD 292 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHTTTCH----HHHHHHHHHHHHTTTSSCCHHHHHHH--------HHHHHTT--TCHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHCCCCCCCCHHHHHHH--------HHHHHHc--CCHH
Confidence 22222 35889999999999987443 344445555444 5677777665 9998765 6788
Q ss_pred HHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCchh---HHHHHHHcC---CHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 249 AWFDYLRLLEDE-----GNADLIRETYERAIANIPPTK---FAELESLLG---DMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 249 ~W~~y~~~~~~~-----g~~~~Ar~~~erAl~~~P~~~---~a~le~~~g---~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
++..++.++... ++.++|...|++|+...+... ++.++...| +++.|...|++++... +...|..
T Consensus 293 a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~----~~~a~~~ 368 (490)
T 2xm6_A 293 GQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG----EKAAQFN 368 (490)
T ss_dssp HHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT----CHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC----CHHHHHH
Confidence 999999999887 899999999999999766544 456666556 8899999999999863 3568888
Q ss_pred HHHHHHh----cCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHHhcc
Q psy8681 318 YIDFEVG----QGERDKVRELHERLLERTVHVKVWMNYAQFEMS----SGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 318 yi~~e~~----~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~----~g~~~~~~~AR~vferAl~~~~~ 380 (521)
++.++.. .+++++|...|++++... ++..|..++.++.. .++ ++.|..+|++|+...|+
T Consensus 369 Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-~~~a~~~Lg~~y~~g~g~~~d---~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 369 LGNALLQGKGVKKDEQQAAIWMRKAAEQG-LSAAQVQLGEIYYYGLGVERD---YVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHHCCCC
Confidence 8888887 799999999999999863 68889999998887 555 99999999999999854
No 67
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=5.7e-13 Score=130.33 Aligned_cols=243 Identities=12% Similarity=0.068 Sum_probs=174.0
Q ss_pred hhhH-HHHHH--HHHHhcCChhhhhhhcCCCcHHHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHH
Q psy8681 56 LEKA-KAWKK--AMEEKQGNKIGEEGANKENEEEERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGAR 130 (521)
Q Consensus 56 lP~~-~~W~~--~~e~~~gn~~~Ar~ife~P~~e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar 130 (521)
.|.. ..|.. ..+...|+++.|..+|+ .|..+ .+.. +..+| ...+|..++.++...|+++.|.
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~------------~a~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~ 89 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCK------------QALEDLEKTS-GHDHPDVATMLNILALVYRDQNKYKDAA 89 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHH------------HHHHHHHHHH-CSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHH------------HHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 4555 66665 66667777777777764 34444 3322 01345 5788999999999999999999
Q ss_pred HHHHHHHHhc-----CCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC-----C
Q psy8681 131 KVYERAVEFF-----GEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI-----P 200 (521)
Q Consensus 131 ~vye~Al~~~-----~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~-----P 200 (521)
.+|++++... ++.+....++..++......| +++.|..+|++++... +
T Consensus 90 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~a~~~~~~~~~~ 147 (311)
T 3nf1_A 90 NLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG----------------------KYKEAEPLCKRALEIREKVLGK 147 (311)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcC----------------------cHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999874 333345677788888887777 9999999999999874 1
Q ss_pred h-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8681 201 K-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--------NPNNYDAWFDYLRLLEDEGNADLIRETYE 271 (521)
Q Consensus 201 ~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~e 271 (521)
. .....++..++.+....|+.+.+... |++++.. +|....+|..++.++...|++++|...|+
T Consensus 148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 219 (311)
T 3nf1_A 148 DHPDVAKQLNNLALLCQNQGKYEEVEYY--------YQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYK 219 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 1 12236788888888899999999877 8998887 67778899999999999999999999999
Q ss_pred HHHHcCCchh--------------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH
Q psy8681 272 RAIANIPPTK--------------------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 272 rAl~~~P~~~--------------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
+++...|... .+......+.+..|...|..++...+. ...+|..++.++...|++++|
T Consensus 220 ~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~la~~~~~~g~~~~A 297 (311)
T 3nf1_A 220 EILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT--VTTTLKNLGALYRRQGKFEAA 297 (311)
T ss_dssp HHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH--HHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch--HHHHHHHHHHHHHHCCCHHHH
Confidence 9998654421 111223344555556666666654332 356788889999999999999
Q ss_pred HHHHHHHHhcCC
Q psy8681 332 RELHERLLERTV 343 (521)
Q Consensus 332 r~l~eral~~~~ 343 (521)
..+|+++++..|
T Consensus 298 ~~~~~~al~l~~ 309 (311)
T 3nf1_A 298 ETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 999999998754
No 68
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.43 E-value=6.8e-10 Score=117.25 Aligned_cols=311 Identities=10% Similarity=-0.090 Sum_probs=220.0
Q ss_pred HHHHh----cCChhhhhhhcC------CCcH-------HHh----cccchhhHHH-HhhhccCCCCChhhHHHHHHHHHH
Q psy8681 65 AMEEK----QGNKIGEEGANK------ENEE-------EER----DKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQ 122 (521)
Q Consensus 65 ~~e~~----~gn~~~Ar~ife------~P~~-------e~r----~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~ 122 (521)
.++.. .++++.|...|+ .|.. +.. .++++.|... ++++ .. .++..+..++.++..
T Consensus 47 ~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~--~~-~~~~a~~~Lg~~y~~ 123 (490)
T 2xm6_A 47 YRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA--LK-GLPQAQQNLGVMYHE 123 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH--HT-TCHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHc
Confidence 56666 789999988888 3332 555 7899999999 9988 43 367889999999998
Q ss_pred ----cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh----hhhhccccchh-----------hHHHHHhhhhh--
Q psy8681 123 ----NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG----QREKYGDRAGI-----------EDVIVSKRKFQ-- 181 (521)
Q Consensus 123 ----~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~----~~~~~~~~~~~-----------~~~~l~~~~~~-- 181 (521)
.+++++|...|++++.. .++..+..++.+... .+ .+..+... ....|+..+..
T Consensus 124 g~g~~~~~~~A~~~~~~a~~~-----~~~~a~~~Lg~~y~~g~g~~~-d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~ 197 (490)
T 2xm6_A 124 GNGVKVDKAESVKWFRLAAEQ-----GRDSGQQSMGDAYFEGDGVTR-DYVMAREWYSKAAEQGNVWSCNQLGYMYSRGL 197 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 78999999999999876 246677777776654 11 11111100 01122333332
Q ss_pred --hhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH----cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 182 --YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK----YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 182 --~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~----~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
.++++.|...|+++++..+. ..+..++.+... .++.+.+... |++++.. .++.++..++.
T Consensus 198 g~~~~~~~A~~~~~~a~~~~~~----~a~~~lg~~y~~g~g~~~~~~~A~~~--------~~~a~~~--~~~~a~~~lg~ 263 (490)
T 2xm6_A 198 GVERNDAISAQWYRKSATSGDE----LGQLHLADMYYFGIGVTQDYTQSRVL--------FSQSAEQ--GNSIAQFRLGY 263 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHTSSSCCCHHHHHHH--------HHHHHTT--TCHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCH----HHHHHHHHHHHcCCCCCCCHHHHHHH--------HHHHHHC--CCHHHHHHHHH
Confidence 46788899999998876433 344445555443 4666666655 8888765 56788899999
Q ss_pred HHHH----cCCHHHHHHHHHHHHHcCCchh---HHHHHHHc-----CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Q psy8681 256 LLED----EGNADLIRETYERAIANIPPTK---FAELESLL-----GDMERARAIYELAISQPRLDMPELVWKAYIDFEV 323 (521)
Q Consensus 256 ~~~~----~g~~~~Ar~~~erAl~~~P~~~---~a~le~~~-----g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~ 323 (521)
++.. .++.++|...|++|+...+... ++.++... ++++.|...|++++...+ ...+..++.++.
T Consensus 264 ~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~----~~a~~~lg~~y~ 339 (490)
T 2xm6_A 264 ILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGD----ATAQANLGAIYF 339 (490)
T ss_dssp HHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHH
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHH
Confidence 9888 7899999999999987644333 56666666 899999999999998643 356666777766
Q ss_pred hcC---ChHHHHHHHHHHHhcCCCHHHHHHHHHHHHH----cCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHH
Q psy8681 324 GQG---ERDKVRELHERLLERTVHVKVWMNYAQFEMS----SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKE 396 (521)
Q Consensus 324 ~~g---~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~----~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~ 396 (521)
..| ++++|..+|++++.. .++..|..++.++.. .++ +++|..+|++|+..... . .+.....
T Consensus 340 ~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~---~~~A~~~~~~A~~~~~~----~----a~~~Lg~ 407 (490)
T 2xm6_A 340 RLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKD---EQQAAIWMRKAAEQGLS----A----AQVQLGE 407 (490)
T ss_dssp HSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCC---HHHHHHHHHHHHHTTCH----H----HHHHHHH
T ss_pred hCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCC---HHHHHHHHHHHHhCCCH----H----HHHHHHH
Confidence 656 789999999999987 678899999998887 455 99999999999985321 1 2222222
Q ss_pred HHHH----cCCHHHHHHHHhhC
Q psy8681 397 FEAQ----HGDDESRAKLNSKL 414 (521)
Q Consensus 397 fE~~----~G~~~~~~~v~~~~ 414 (521)
+-.. .||.+.+.....+.
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHH
Confidence 2223 57887777766554
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.42 E-value=1.8e-11 Score=124.91 Aligned_cols=234 Identities=10% Similarity=0.066 Sum_probs=179.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcC---CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~---~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
...|.++...|+++.|...|++|+.... +.+....++..++.+....| +++.|..
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~----------------------~~~~A~~ 164 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK----------------------QTYFSMD 164 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC----------------------CHHHHHH
Confidence 3388889999999999999999998743 22224577778888887777 9999999
Q ss_pred HHHHHHhcCChh-----hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHHHH
Q psy8681 191 IYKYALDHIPKD-----RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLLED 259 (521)
Q Consensus 191 iy~~aL~~~P~~-----~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~~~ 259 (521)
.|.+|++..+.. ....++..++......|+.+.|... |++++...|.. ..++..++.++..
T Consensus 165 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~lg~~y~~ 236 (383)
T 3ulq_A 165 YARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH--------FQKAYSMAEAEKQPQLMGRTLYNIGLCKNS 236 (383)
T ss_dssp HHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHH--------HHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 999999874432 2235777788888899999999877 99999875533 2589999999999
Q ss_pred cCCHHHHHHHHHHHHH-----cC-Cchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC--CC-cHHHHHHHHHHHHhc
Q psy8681 260 EGNADLIRETYERAIA-----NI-PPTK-----FAELESLLGDMERARAIYELAISQPRL--DM-PELVWKAYIDFEVGQ 325 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~-----~~-P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~--~~-~~~lw~~yi~~e~~~ 325 (521)
.|++++|...|++|+. .. |... .+.++..+|+++.|...|++++...+. +. ....+..+..++...
T Consensus 237 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~ 316 (383)
T 3ulq_A 237 QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSG 316 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCC
Confidence 9999999999999999 34 4332 677888999999999999999874210 10 112234456667778
Q ss_pred CC---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 326 GE---RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 326 g~---~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
|+ +.+|..++++.-.......++..++.++...|+ +++|...|++|+.....
T Consensus 317 ~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 317 PDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKN---FQKASAYFLKVEQVRQL 371 (383)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTS
T ss_pred CcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHH
Confidence 88 777777777662111246678889999999998 99999999999987654
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=5.6e-11 Score=120.39 Aligned_cols=259 Identities=12% Similarity=0.008 Sum_probs=193.8
Q ss_pred hcccchhhHHH-HhhhccCCCC-C-h----hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-D-T----TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAKFE 157 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~-~----~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~~e 157 (521)
..|+++.|+.. ++++ ...| + . .++..++.++...|+++.|+..|++++...+..... ...+..++...
T Consensus 26 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 26 NDGNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HTTCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 34666666666 7888 6666 2 2 256777888889999999999999999875432111 22334555566
Q ss_pred HhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 158 EGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
...| +++.|...|++++...+. .....++..++......|+.+.+...
T Consensus 104 ~~~G----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~---- 157 (373)
T 1hz4_A 104 FAQG----------------------FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEAS---- 157 (373)
T ss_dssp HHTT----------------------CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHCC----------------------CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHH----
Confidence 6666 999999999999987421 11224566677777888999999877
Q ss_pred HHHHHHHHHhhCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc--h--h--------HHHHHHHcCCHHH
Q psy8681 232 RKFQYEEEVNSNPN-----NYDAWFDYLRLLEDEGNADLIRETYERAIANIPP--T--K--------FAELESLLGDMER 294 (521)
Q Consensus 232 rr~~ye~al~~~P~-----~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~--~--~--------~a~le~~~g~~e~ 294 (521)
|++++...|. ...+|..++.++...|++++|...|++++...+. . . .+.+....|+++.
T Consensus 158 ----~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 158 ----ARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp ----HHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ----HHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 9999998775 2467888999999999999999999999876322 1 1 1233568899999
Q ss_pred HHHHHHHHHcCCCCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHcCCchhhH
Q psy8681 295 ARAIYELAISQPRLD--MPELVWKAYIDFEVGQGERDKVRELHERLLERTV------H-VKVWMNYAQFEMSSGDEDSVS 365 (521)
Q Consensus 295 Ar~ife~al~~~~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~------~-~~vwi~ya~~e~~~g~~~~~~ 365 (521)
|...+..++...+.. .....+..++.++...|+++.|..++++++...+ . ..++..++..+...|+ .+
T Consensus 234 A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~ 310 (373)
T 1hz4_A 234 AANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR---KS 310 (373)
T ss_dssp HHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HH
T ss_pred HHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCC---HH
Confidence 999999998754322 1234567778888899999999999999988642 1 2467778888888898 99
Q ss_pred HHHHHHHHHHHHhccc
Q psy8681 366 LARRVFERANQALKAS 381 (521)
Q Consensus 366 ~AR~vferAl~~~~~~ 381 (521)
.|+..|++|+...+..
T Consensus 311 ~A~~~l~~al~~~~~~ 326 (373)
T 1hz4_A 311 DAQRVLLDALKLANRT 326 (373)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999887643
No 71
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.40 E-value=1.5e-11 Score=110.15 Aligned_cols=152 Identities=12% Similarity=0.027 Sum_probs=100.0
Q ss_pred cchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccc
Q psy8681 91 ERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168 (521)
Q Consensus 91 ~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~ 168 (521)
+++.|... ++++ ..+| +...|..++..+...|+++.|..+|++++...| .+..+|..++......+
T Consensus 23 ~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~------- 90 (186)
T 3as5_A 23 RYSQAVMLLEQVY--DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP---DNVKVATVLGLTYVQVQ------- 90 (186)
T ss_dssp CHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-------
T ss_pred CHHHHHHHHHHHH--HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhc-------
Confidence 33334444 4666 6666 566677777777777777777777777776643 34566666666666665
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.
T Consensus 91 ---------------~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~ 145 (186)
T 3as5_A 91 ---------------KYDLAVPLLIKVAEANPINF--NVRFRLGVALDNLGRFDEAIDS--------FKIALGLRPNEGK 145 (186)
T ss_dssp ---------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHH
T ss_pred ---------------CHHHHHHHHHHHHhcCcHhH--HHHHHHHHHHHHcCcHHHHHHH--------HHHHHhcCccchH
Confidence 67777777777777666654 5666666666666776666655 7777777777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
+|..++.++...|++++|...|++++...|.
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 7777777777777777777777776665543
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.39 E-value=4e-11 Score=112.77 Aligned_cols=196 Identities=11% Similarity=0.011 Sum_probs=151.4
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHcCChhh
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIP-KDRTAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P-~~~~~~l~~~~~~~e~~~G~~~~ 223 (521)
.++..|...+......| +++.|...|++++...| .+. .++..++......|+.+.
T Consensus 5 ~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~~~~~~~~~ 60 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAK----------------------NYAVAFEKYSEYLKLTNNQDS--VTAYNCGVCADNIKKYKE 60 (228)
T ss_dssp CCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHTTTCCH--HHHHHHHHHHHHTTCHHH
T ss_pred cCHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHhccCCCCc--HHHHHHHHHHHHhhcHHH
Confidence 35677788887777777 99999999999999998 554 566667888888999999
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCC
Q psy8681 224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------------FAELESLLGD 291 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~ 291 (521)
+... |++++..+|.+..+|..++.++...|++++|...|++++...|.+. .+.+....|+
T Consensus 61 A~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 132 (228)
T 4i17_A 61 AADY--------FDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN 132 (228)
T ss_dssp HHHH--------HHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH--------HHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc
Confidence 9877 9999999999999999999999999999999999999999999855 3556678899
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHH
Q psy8681 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRV 370 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~v 370 (521)
++.|...|++++...|.+.....|...+.++... +..+++++....+ .+..+... .....+. +++|...
T Consensus 133 ~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~---~~~A~~~ 202 (228)
T 4i17_A 133 IEKAEENYKHATDVTSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAA---FKKAVDY 202 (228)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHH---HHHHHHH
Confidence 9999999999998765310245666666665443 3455666666653 33333222 2222333 8999999
Q ss_pred HHHHHHHhccch
Q psy8681 371 FERANQALKASS 382 (521)
Q Consensus 371 ferAl~~~~~~~ 382 (521)
|++|++..|++.
T Consensus 203 ~~~a~~l~p~~~ 214 (228)
T 4i17_A 203 LGEAVTLSPNRT 214 (228)
T ss_dssp HHHHHHHCTTCH
T ss_pred HHHHhhcCCCCH
Confidence 999999999874
No 73
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.39 E-value=4.6e-11 Score=106.93 Aligned_cols=155 Identities=16% Similarity=-0.006 Sum_probs=107.0
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. .++..++......|+.+.+... |++++..+|.+..+|..++..+...|++
T Consensus 23 ~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 92 (186)
T 3as5_A 23 RYSQAVMLLEQVYDADAFDV--DVALHLGIAYVKTGAVDRGTEL--------LERSLADAPDNVKVATVLGLTYVQVQKY 92 (186)
T ss_dssp CHHHHHHHHTTTCCTTSCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred CHHHHHHHHHHHHHhCccCh--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCCHHHHHHHHHHHHHhcCH
Confidence 66666666666666655543 4555555555556666655544 6666666666666666666666555555
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
++|...|++++...|. ...+|..++..+...|+++.|..+|++++...|
T Consensus 93 ~~A~~~~~~~~~~~~~-------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 141 (186)
T 3as5_A 93 DLAVPLLIKVAEANPI-------------------------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP 141 (186)
T ss_dssp HHHHHHHHHHHHHCTT-------------------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCcH-------------------------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc
Confidence 5555555555554442 245677777778888899999999999888876
Q ss_pred -CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 344 -HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 344 -~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
++.+|..++..+...|+ ++.|..+|++++...|.+.
T Consensus 142 ~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 142 NEGKVHRAIAFSYEQMGR---HEEALPHFKKANELDEGAS 178 (186)
T ss_dssp TCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCch
Confidence 67888888888888888 8999999999988887653
No 74
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.39 E-value=9e-12 Score=120.04 Aligned_cols=162 Identities=15% Similarity=0.044 Sum_probs=136.0
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHh-
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG- 159 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~- 159 (521)
..+.|+++.|+.. ++++ ..+| + ...|..+|..+...|+++.|...|++++...|.++..+.++..++.....
T Consensus 25 ~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~ 102 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVF--TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL 102 (261)
T ss_dssp HHHTTCHHHHHHHHHHHG--GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence 3445666666777 7999 9999 6 78999999999999999999999999999988665567778888877766
Q ss_pred -------hhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHH-----------------HHHHHHH
Q psy8681 160 -------QREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIY-----------------KAYTIHE 215 (521)
Q Consensus 160 -------~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~-----------------~~~~~~e 215 (521)
.| +++.|...|++++...|.+. ..+ ..++.+.
T Consensus 103 ~~~~~~~~~----------------------~~~~A~~~~~~~l~~~p~~~--~~~~a~~~~~~~~~~~~~~~~~la~~~ 158 (261)
T 3qky_A 103 SPPYELDQT----------------------DTRKAIEAFQLFIDRYPNHE--LVDDATQKIRELRAKLARKQYEAARLY 158 (261)
T ss_dssp CCCTTSCCH----------------------HHHHHHHHHHHHHHHCTTCT--THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccch----------------------hHHHHHHHHHHHHHHCcCch--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 99999999999999999864 222 4556777
Q ss_pred HHcCChhhHHHHHHhhHHHHHHHHHhhCCC---CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCchh
Q psy8681 216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPN---NYDAWFDYLRLLEDE----------GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 216 ~~~G~~~~a~~~i~~krr~~ye~al~~~P~---~~~~W~~y~~~~~~~----------g~~~~Ar~~~erAl~~~P~~~ 281 (521)
...|+.+.|... |++++..+|. ...+|+.++..+... |++++|...|++++...|.+.
T Consensus 159 ~~~g~~~~A~~~--------~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 159 ERRELYEAAAVT--------YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHTTCHHHHHHH--------HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHccCHHHHHHH--------HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 788999998877 9999999998 467999999999876 788999999999999999875
No 75
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.37 E-value=1.4e-11 Score=118.60 Aligned_cols=198 Identities=13% Similarity=0.006 Sum_probs=136.8
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| ++..+...|..+...|++++|...|++++...|..+..+.+|..++......|
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~---------------------- 66 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNK---------------------- 66 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTT----------------------
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhC----------------------
Confidence 4456 68999999999999999999999999999998754444788898998888888
Q ss_pred hHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHH--------cCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKK--------YGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYL 254 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~--------~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~ 254 (521)
+++.|...|++++...|.+. ....+..++..... .|+.+.|... |++++..+|.+..++..+.
T Consensus 67 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~--------~~~~l~~~p~~~~~~~a~~ 138 (261)
T 3qky_A 67 EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEA--------FQLFIDRYPNHELVDDATQ 138 (261)
T ss_dssp CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH--------HHHHHHHCTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHH--------HHHHHHHCcCchhHHHHHH
Confidence 99999999999999988652 23556666666666 7888888766 9999999999877774443
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC-CcHHHHHHHHHHHHhc--------
Q psy8681 255 RLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQ-------- 325 (521)
Q Consensus 255 ~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~-~~~~lw~~yi~~e~~~-------- 325 (521)
.+....+....+ .| ..+.++...|+++.|...|+.++...|.+ .....|...+..+...
T Consensus 139 ~~~~~~~~~~~~--~~----------~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~ 206 (261)
T 3qky_A 139 KIRELRAKLARK--QY----------EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRAR 206 (261)
T ss_dssp HHHHHHHHHHHH--HH----------HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred HHHHHHHHHHHH--HH----------HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhc
Confidence 322211111100 00 03455555666666666666666533221 1234455555555444
Q ss_pred --CChHHHHHHHHHHHhcCCC
Q psy8681 326 --GERDKVRELHERLLERTVH 344 (521)
Q Consensus 326 --g~~~~Ar~l~eral~~~~~ 344 (521)
|++++|...|++++..+|+
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT
T ss_pred ccchHHHHHHHHHHHHHHCCC
Confidence 7778888888888887763
No 76
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.37 E-value=8.1e-12 Score=119.96 Aligned_cols=151 Identities=13% Similarity=0.106 Sum_probs=123.8
Q ss_pred hhHHH-HhhhccC-CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhc-----CCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 94 REEED-ERKDEGD-RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFF-----GEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 94 ~Ar~~-eral~~~-~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~-----~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
.|..+ .+.. . .+| .+.+|..++.++...|+++.|...|++++... ++++....+|..++......|
T Consensus 26 ~al~~~~~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 99 (283)
T 3edt_B 26 QALEDLEKTS--GHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG---- 99 (283)
T ss_dssp HHHHHHHHHH--CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT----
T ss_pred HHHHHHHHhc--CCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc----
Confidence 44444 4443 3 335 57899999999999999999999999999874 333445678888888888887
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC--------ChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHH
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI--------PKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~--------P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye 237 (521)
+++.|...|++++... |.. ..++..++......|+.+.+... |+
T Consensus 100 ------------------~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~~~~la~~~~~~g~~~~A~~~--------~~ 151 (283)
T 3edt_B 100 ------------------KYKEAEPLCKRALEIREKVLGKFHPDV--AKQLNNLALLCQNQGKAEEVEYY--------YR 151 (283)
T ss_dssp ------------------CHHHHHHHHHHHHHHHHHHHCTTCHHH--HHHHHHHHHHHHTTTCHHHHHHH--------HH
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHcCCCChHH--HHHHHHHHHHHHHcCCHHHHHHH--------HH
Confidence 9999999999999873 333 37888888888899999999877 99
Q ss_pred HHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 238 EEVNS--------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 238 ~al~~--------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
+++.. .|....+|..++.++...|++++|...|++++...|
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~ 200 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAH 200 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 99888 677788999999999999999999999999988644
No 77
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.37 E-value=3.4e-10 Score=114.62 Aligned_cols=271 Identities=11% Similarity=0.018 Sum_probs=197.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL--DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
..++...+.+....|+++.|...+++++...|.... ...++..++......| +++.
T Consensus 14 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~ 71 (373)
T 1hz4_A 14 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG----------------------ELTR 71 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT----------------------CHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC----------------------cHHH
Confidence 355677788888999999999999999998763211 1123445555555566 9999
Q ss_pred HHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC--------CCCHHHHHHHHH
Q psy8681 188 ARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN--------PNNYDAWFDYLR 255 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~--------P~~~~~W~~y~~ 255 (521)
|+..|++++...|... ....+..++.+....|+.+.+... |++++... |....++..++.
T Consensus 72 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~~~la~ 143 (373)
T 1hz4_A 72 SLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWET--------QEKAFQLINEQHLEQLPMHEFLVRIRAQ 143 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCTTSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHhccccCcHHHHHHHHHHH
Confidence 9999999998755432 123345567777888999998877 88888764 334567778899
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCCHHHHHHHHHHHHcC-CCCCCcHHHHHH-----HH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGDMERARAIYELAISQ-PRLDMPELVWKA-----YI 319 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~~e~Ar~ife~al~~-~~~~~~~~lw~~-----yi 319 (521)
++...|++++|...|++++...|... ++.+....|+++.|...++.++.. .....+ ..|.. .+
T Consensus 144 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~-~~~~~~~~~~~~ 222 (373)
T 1hz4_A 144 LLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYH-SDWISNANKVRV 222 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCC-HHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcc-hhHHHHHHHHHH
Confidence 99999999999999999999876421 567788899999999999999863 111112 23333 23
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHH
Q psy8681 320 DFEVGQGERDKVRELHERLLERTVH-----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAW 394 (521)
Q Consensus 320 ~~e~~~g~~~~Ar~l~eral~~~~~-----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~ 394 (521)
.+....|+++.|..++++++...+. ...+..++..+...|+ ++.|...+++++...+..+.......++...
T Consensus 223 ~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~l 299 (373)
T 1hz4_A 223 IYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGE---FEPAEIVLEELNENARSLRLMSDLNRNLLLL 299 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 4466899999999999999876532 3367788888989898 9999999999998876644322223344444
Q ss_pred HHHHHHcCCHHHHHHHHhhC
Q psy8681 395 KEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 395 ~~fE~~~G~~~~~~~v~~~~ 414 (521)
...-...|+.+.+.....+.
T Consensus 300 a~~~~~~g~~~~A~~~l~~a 319 (373)
T 1hz4_A 300 NQLYWQAGRKSDAQRVLLDA 319 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 44455779998887777665
No 78
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.34 E-value=1.5e-11 Score=108.72 Aligned_cols=139 Identities=13% Similarity=0.056 Sum_probs=123.2
Q ss_pred hcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcc
Q psy8681 88 RDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG 165 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~ 165 (521)
..|++++|+.. ++++ ...| ++..|..++.++...|+++.|...|++++...| .++.+|..++.+....|
T Consensus 9 ~~~~~e~ai~~~~~a~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~~---- 79 (150)
T 4ga2_A 9 SKADVERYIASVQGST--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE---RDPKAHRFLGLLYELEE---- 79 (150)
T ss_dssp CHHHHHHHHHHHHHHS--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----
T ss_pred HcChHHHHHHHHHHhc--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcC----
Confidence 35788999999 9999 8888 688899999999999999999999999999965 47889999999999888
Q ss_pred ccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 166 DRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|+++++..|.+. .+|..++.+....|+...+... .+++++..+|+
T Consensus 80 ------------------~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~aa~~-------~~~~al~l~P~ 132 (150)
T 4ga2_A 80 ------------------NTDKAVECYRRSVELNPTQK--DLVLKIAELLCKNDVTDGRAKY-------WVERAAKLFPG 132 (150)
T ss_dssp ------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHCSSSSHHHH-------HHHHHHHHSTT
T ss_pred ------------------chHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHH-------HHHHHHHhCcC
Confidence 99999999999999999987 7899999988889987654432 16999999999
Q ss_pred CHHHHHHHHHHHHHcCC
Q psy8681 246 NYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~ 262 (521)
++.+|.....++...|+
T Consensus 133 ~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 133 SPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CHHHHHHHHHHHHHhCc
Confidence 99999999999887774
No 79
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.30 E-value=7.2e-11 Score=120.34 Aligned_cols=222 Identities=10% Similarity=-0.006 Sum_probs=174.4
Q ss_pred HHhcccchhhHHH-HhhhccCC---CC----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----cHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDR---DS----DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----DEKLFIAF 153 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~---~P----~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~~~lw~~~ 153 (521)
....|+++.|... ++++ .. .| ...+|..+|.++...|+++.|...|.+|+...+.... ...++..+
T Consensus 113 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAE--SKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH--HHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 3456777888888 8887 55 22 2578999999999999999999999999998654322 23456666
Q ss_pred HHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 154 AKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 154 a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
+......| +++.|...|++|+...|... ...++..++......|+.+.|...
T Consensus 191 g~~~~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~-- 246 (383)
T 3ulq_A 191 ATNFLDLK----------------------QYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY-- 246 (383)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHHhc----------------------CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 77776676 99999999999998754321 235777788888899999999877
Q ss_pred hhHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCC--
Q psy8681 230 SKRKFQYEEEVN-----SN-PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGD-- 291 (521)
Q Consensus 230 ~krr~~ye~al~-----~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~-- 291 (521)
|++++. .+ |....++..++..+...|++++|...|++|+...+... ++.++...|+
T Consensus 247 ------~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 320 (383)
T 3ulq_A 247 ------FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEE 320 (383)
T ss_dssp ------HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHH
T ss_pred ------HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHH
Confidence 999998 56 77889999999999999999999999999998754321 4556667788
Q ss_pred -HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 292 -MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 292 -~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
+..|..+++.+-..+ ....++...+.++...|++++|...|++++...
T Consensus 321 ~~~~al~~~~~~~~~~---~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 321 AIQGFFDFLESKMLYA---DLEDFAIDVAKYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 778888887762211 124577778888999999999999999999864
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.30 E-value=1.6e-10 Score=107.77 Aligned_cols=153 Identities=13% Similarity=0.087 Sum_probs=103.5
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHH----------------HHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKA----------------YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~----------------~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
|+++.|...|++++...|.+. ..|.. ++......|+.+.|... |++++..+|.+
T Consensus 18 g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~ 87 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLF--------YKELLQKAPNN 87 (208)
T ss_dssp TCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTC
T ss_pred CCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHCCCC
Confidence 499999999999999999876 56666 77777788888888876 89999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcC--CHHHHHHHHHHHHcCCCCCCcHHHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLG--DMERARAIYELAISQPRLDMPELVWKAYI 319 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g--~~e~Ar~ife~al~~~~~~~~~~lw~~yi 319 (521)
+.+|..++.++...|++++|...|++++...|.+. ++.++...| ....+...|..++..++ ....|...+
T Consensus 88 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~a~~~~g 164 (208)
T 3urz_A 88 VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK---MQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc---hhHHHHHHH
Confidence 99999999999888999999999999888888754 233332222 23344445555443221 111222223
Q ss_pred HHHHhcCChHHHHHHHHHHHhcCCCHHHH
Q psy8681 320 DFEVGQGERDKVRELHERLLERTVHVKVW 348 (521)
Q Consensus 320 ~~e~~~g~~~~Ar~l~eral~~~~~~~vw 348 (521)
......|++++|+..|++++...|+..+.
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l~P~~~~~ 193 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILRFPSTEAQ 193 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTTSCCHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCHHHH
Confidence 33344566666666666666666654433
No 81
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.29 E-value=1.1e-10 Score=108.90 Aligned_cols=165 Identities=12% Similarity=0.083 Sum_probs=132.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHH----------------HHHHHHhhhhhccccchhhH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIA----------------FAKFEEGQREKYGDRAGIED 172 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~----------------~a~~e~~~~~~~~~~~~~~~ 172 (521)
++..++..+..+...|+++.|...|++++...| .++.+|.. ++......|
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g----------- 68 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYWTNVDKNSEISSKLATELALAYKKNR----------- 68 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTT-----------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHhhhcchhhhhHHHHHHHHHHHHHCC-----------
Confidence 467788889999999999999999999999854 35666666 666665555
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHH
Q psy8681 173 VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFD 252 (521)
Q Consensus 173 ~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~ 252 (521)
+++.|...|+++++..|.+. .+|..++.+....|+.+.|... |++++..+|.++.+|+.
T Consensus 69 -----------~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~P~~~~a~~~ 127 (208)
T 3urz_A 69 -----------NYDKAYLFYKELLQKAPNNV--DCLEACAEMQVCRGQEKDALRM--------YEKILQLEADNLAANIF 127 (208)
T ss_dssp -----------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCCHHHHHH
Confidence 99999999999999999987 8899999999999999999877 99999999999999999
Q ss_pred HHHHHHHcC--CHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 253 YLRLLEDEG--NADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 253 y~~~~~~~g--~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
++.++...| ....+...|.+++...|... .+.....+|+++.|...|++++...|.
T Consensus 128 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 128 LGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 999987655 34566777777765433221 233445679999999999999997663
No 82
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.29 E-value=4.4e-11 Score=114.78 Aligned_cols=223 Identities=13% Similarity=0.109 Sum_probs=164.1
Q ss_pred HcCChhHHHHHHHHHHHhcC-----CccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEFFG-----EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYAL 196 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~-----~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL 196 (521)
..|+++.|...|++|+..+. +++....+|..++......| +++.|...|++++
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~al 70 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN----------------------KYKEAAHLLNDAL 70 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc----------------------cHHHHHHHHHHHH
Confidence 45789999999999998642 22345677888888888887 9999999999999
Q ss_pred hcC-----Ch-hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCC
Q psy8681 197 DHI-----PK-DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS--------NPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 197 ~~~-----P~-~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~--------~P~~~~~W~~y~~~~~~~g~ 262 (521)
... +. .....++..++......|+.+.+... |++++.. +|....+|..++.++...|+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 142 (283)
T 3edt_B 71 AIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPL--------CKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK 142 (283)
T ss_dssp HHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHH--------HHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC
Confidence 773 11 12236788888888899999999877 8888877 46778899999999999999
Q ss_pred HHHHHHHHHHHHHc--------CCchh-----HHHHHHHcCCHHHHHHHHHHHHcCC-------CCCCcHHHHHHHHHHH
Q psy8681 263 ADLIRETYERAIAN--------IPPTK-----FAELESLLGDMERARAIYELAISQP-------RLDMPELVWKAYIDFE 322 (521)
Q Consensus 263 ~~~Ar~~~erAl~~--------~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~-------~~~~~~~lw~~yi~~e 322 (521)
+++|...|++++.. .|... ++.++...|+++.|...|+.++... .......+|.....+.
T Consensus 143 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (283)
T 3edt_B 143 AEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEERE 222 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHH
Confidence 99999999999997 33322 6778889999999999999998631 0111234666666555
Q ss_pred HhcCChH------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 323 VGQGERD------KVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 323 ~~~g~~~------~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...+... .+...+..+....| .+.+|..++.++...|+ +++|..+|++|+..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 281 (283)
T 3edt_B 223 ESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK---LEAAHTLEDCASRN 281 (283)
T ss_dssp HTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred hcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Confidence 5444333 33333332222222 36678889999999998 99999999999864
No 83
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.28 E-value=3.8e-11 Score=132.60 Aligned_cols=182 Identities=10% Similarity=-0.000 Sum_probs=140.1
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHH--------HhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHH
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAV--------EFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV 175 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al--------~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l 175 (521)
...| ++..+...+ ...|++++|...|++++ ...| .+..+|...+......|
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p---~~~~~~~~~a~~~~~~g-------------- 447 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFS---ESVELPLMEVRALLDLG-------------- 447 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCT---TCSHHHHHHHHHHHHHT--------------
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccc---cchhHHHHHHHHHHhcC--------------
Confidence 3456 455555444 67899999999999999 5533 46788999998888888
Q ss_pred HhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 176 ~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
+++.|...|+++++..|.+. .+|..++......|+.+.|... |++++..+|.++.+|+.++.
T Consensus 448 --------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~al~l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 448 --------DVAKATRKLDDLAERVGWRW--RLVWYRAVAELLTGDYDSATKH--------FTEVLDTFPGELAPKLALAA 509 (681)
T ss_dssp --------CHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTTCSHHHHHHHH
T ss_pred --------CHHHHHHHHHHHhccCcchH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCChHHHHHHHH
Confidence 99999999999999999887 7888888888899999999877 99999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELH 335 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~ 335 (521)
++...|++++ ...|++|++..|.+. .+|...+..+...|++++|...|
T Consensus 510 ~~~~~g~~~~-~~~~~~al~~~P~~~-------------------------------~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 510 TAELAGNTDE-HKFYQTVWSTNDGVI-------------------------------SAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp HHHHHTCCCT-TCHHHHHHHHCTTCH-------------------------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCChHH-HHHHHHHHHhCCchH-------------------------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999 999999998888643 34444555555556666666666
Q ss_pred HHHHhcCC-CHHHHHHHHHHHH
Q psy8681 336 ERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 336 eral~~~~-~~~vwi~ya~~e~ 356 (521)
+++++..| +..+|...+..+.
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC
T ss_pred HhhcccCcccHHHHHHHHHHHH
Confidence 66555554 2455555555443
No 84
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.28 E-value=5.9e-11 Score=107.39 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=123.8
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
+| ....++..+..+...|+++.|...|++++...| .++.+|..++.+....| ++
T Consensus 2 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g----------------------~~ 56 (176)
T 2r5s_A 2 NASPDEQLLKQVSELLQQGEHAQALNVIQTLSDELQ---SRGDVKLAKADCLLETK----------------------QF 56 (176)
T ss_dssp ----CTTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH---TSHHHHHHHHHHHHHTT----------------------CH
T ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHCC----------------------CH
Confidence 45 356788999999999999999999999999855 47889999999998888 99
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHH--HHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIH--EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~--e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+.|...|++++...| +. .++...+.+ ....+. ..+.. .|++++..+|.++.+|+.++..+...|++
T Consensus 57 ~~A~~~~~~a~~~~p-~~--~~~~~~~~~~~~~~~~~-~~a~~--------~~~~al~~~P~~~~~~~~la~~~~~~g~~ 124 (176)
T 2r5s_A 57 ELAQELLATIPLEYQ-DN--SYKSLIAKLELHQQAAE-SPELK--------RLEQELAANPDNFELACELAVQYNQVGRD 124 (176)
T ss_dssp HHHHHHHTTCCGGGC-CH--HHHHHHHHHHHHHHHTS-CHHHH--------HHHHHHHHSTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHhhhccC-Ch--HHHHHHHHHHHHhhccc-chHHH--------HHHHHHHhCCCCHHHHHHHHHHHHHcccH
Confidence 999999999999988 54 333332222 222222 22333 39999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q psy8681 264 DLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~ 340 (521)
++|...|++++...|... ...+|..++.++...|+.+.|...|+++|.
T Consensus 125 ~~A~~~~~~~l~~~p~~~-----------------------------~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 125 EEALELLWNILKVNLGAQ-----------------------------DGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHTTCTTTT-----------------------------TTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccC-----------------------------hHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 999999999888877421 123455555555555666666666665553
No 85
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.27 E-value=3.2e-10 Score=106.86 Aligned_cols=193 Identities=8% Similarity=-0.077 Sum_probs=133.3
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..+...|..+...|++++|...|++++...|..+....++..++......| +++.|
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~----------------------~~~~A 60 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA----------------------DLPLA 60 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC----------------------CHHHH
Confidence 45678888888888999999999999999887754444677888888777777 89999
Q ss_pred HHHHHHHHhcCChhhHH-HHHHHHHHHHH------------------HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 189 RVIYKYALDHIPKDRTA-EIYKAYTIHEK------------------KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~-~l~~~~~~~e~------------------~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
...|+++++..|.+... ..+...+.... ..|+.+.|... |++++..+|.+..+
T Consensus 61 ~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~--------~~~~l~~~P~~~~a 132 (225)
T 2yhc_A 61 QAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSD--------FSKLVRGYPNSQYT 132 (225)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHH--------HHHHHTTCTTCTTH
T ss_pred HHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHH--------HHHHHHHCcCChhH
Confidence 99999999988876421 12222222211 13455556554 99999999999877
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCC-cHHHHHHHHHHHHhcCCh
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDM-PELVWKAYIDFEVGQGER 328 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~-~~~lw~~yi~~e~~~g~~ 328 (521)
|..+..+..-.+....+. + ..+.++...|+++.|...|++++...|.+. ...++...+..+...|++
T Consensus 133 ~~a~~~l~~~~~~~~~~~--~----------~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 133 TDATKRLVFLKDRLAKYE--Y----------SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp HHHHHHHHHHHHHHHHHH--H----------HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHHH--H----------HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 755443322111111100 0 145667778888888888888888554321 235677778888889999
Q ss_pred HHHHHHHHHHHhcCC
Q psy8681 329 DKVRELHERLLERTV 343 (521)
Q Consensus 329 ~~Ar~l~eral~~~~ 343 (521)
+.|+..|++++...|
T Consensus 201 ~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 201 AQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHhhCC
Confidence 999999998887764
No 86
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.26 E-value=1.8e-10 Score=113.38 Aligned_cols=201 Identities=11% Similarity=0.006 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+...+.++...|++++|...|.+|+...+. ......+|..++......| +++.|.
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g----------------------~~~~A~ 97 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG----------------------NSVNAV 97 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCC----------------------CHHHHH
Confidence 334455677889999999999999987431 1122567788888888777 999999
Q ss_pred HHHHHHHhcCChhh----HHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHHH
Q psy8681 190 VIYKYALDHIPKDR----TAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLLE 258 (521)
Q Consensus 190 ~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~~ 258 (521)
..|++|+...|... ....+..++.+.... |+.+.|... |++++...|.+ ..+|..++.++.
T Consensus 98 ~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~--------~~~Al~~~~~~~~~~~~~~~~~~lg~~~~ 169 (292)
T 1qqe_A 98 DSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDC--------YELAGEWYAQDQSVALSNKCFIKCADLKA 169 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHH--------HHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 99999998866431 235777888888885 999999877 99999988754 567889999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCchh------------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc---HHHHHHHHHHHH
Q psy8681 259 DEGNADLIRETYERAIANIPPTK------------FAELESLLGDMERARAIYELAISQPRLDMP---ELVWKAYIDFEV 323 (521)
Q Consensus 259 ~~g~~~~Ar~~~erAl~~~P~~~------------~a~le~~~g~~e~Ar~ife~al~~~~~~~~---~~lw~~yi~~e~ 323 (521)
..|++++|...|++++...|... .+.++..+|+++.|+..|++++...|.... ..++...+..+.
T Consensus 170 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~ 249 (292)
T 1qqe_A 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (292)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999877532 234455677777777777777774332111 112222222222
Q ss_pred --hcCChHHHHHHHHHHHhcCC
Q psy8681 324 --GQGERDKVRELHERLLERTV 343 (521)
Q Consensus 324 --~~g~~~~Ar~l~eral~~~~ 343 (521)
..+.+..|...|++++...|
T Consensus 250 ~~~~~~~~~A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 250 EGDSEQLSEHCKEFDNFMRLDK 271 (292)
T ss_dssp TTCTTTHHHHHHHHTTSSCCCH
T ss_pred cCCHHHHHHHHHHhccCCccHH
Confidence 34556666666666655544
No 87
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.26 E-value=9.6e-11 Score=103.44 Aligned_cols=139 Identities=14% Similarity=-0.020 Sum_probs=111.3
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
..+++++|...|+.++...|... ..+..++.+....|+.+.|... |+++|..+|.++.+|..++.++...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~--~~~~~la~~y~~~~~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKS--IKGFYFAKLYYEAKEYDLAKKY--------ICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHH--TTHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HcChHHHHHHHHHHhcccCcccH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34589999999999998877665 5677788888889999999877 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHH-HHHHH
Q psy8681 261 GNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL-HERLL 339 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l-~eral 339 (521)
|++++|...|++|+...|.+ ..+|..++.++...|++++|... +++++
T Consensus 79 ~~~~~A~~~~~~al~~~p~~-------------------------------~~~~~~la~~~~~~~~~~~aa~~~~~~al 127 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQ-------------------------------KDLVLKIAELLCKNDVTDGRAKYWVERAA 127 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-------------------------------HHHHHHHHHHHHHHCSSSSHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhCCCC-------------------------------HHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 99999999999988887753 34666777777777877655544 57888
Q ss_pred hcCC-CHHHHHHHHHHHHHcCC
Q psy8681 340 ERTV-HVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 340 ~~~~-~~~vwi~ya~~e~~~g~ 360 (521)
+..| ++.+|...+.+....|+
T Consensus 128 ~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 128 KLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHSTTCHHHHHHHHHHHHTCCC
T ss_pred HhCcCCHHHHHHHHHHHHHhCc
Confidence 8776 57777777777666654
No 88
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.26 E-value=4.6e-10 Score=123.88 Aligned_cols=160 Identities=16% Similarity=0.061 Sum_probs=143.4
Q ss_pred HHhcccchhhHHH-Hhhhc------cCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDE------GDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE 157 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~------~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e 157 (521)
-...|++++|... ++++. ...+| +...|..++..+...|++++|...|++++...| .+..+|..++...
T Consensus 401 a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 401 ATVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG---WRWRLVWYRAVAE 477 (681)
T ss_dssp HTTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC---CCHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc---chHHHHHHHHHHH
Confidence 3467889999999 88871 13568 789999999999999999999999999999965 4688999999988
Q ss_pred HhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHH
Q psy8681 158 EGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237 (521)
Q Consensus 158 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye 237 (521)
...| ++++|...|+++++..|.+. ..|..++......|+.+. ... |+
T Consensus 478 ~~~g----------------------~~~~A~~~~~~al~l~P~~~--~~~~~lg~~~~~~g~~~~-~~~--------~~ 524 (681)
T 2pzi_A 478 LLTG----------------------DYDSATKHFTEVLDTFPGEL--APKLALAATAELAGNTDE-HKF--------YQ 524 (681)
T ss_dssp HHHT----------------------CHHHHHHHHHHHHHHSTTCS--HHHHHHHHHHHHHTCCCT-TCH--------HH
T ss_pred HHcC----------------------CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCChHH-HHH--------HH
Confidence 8888 99999999999999999987 788889988889999988 766 99
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 238 ~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+++..+|.+..+|+.++..+...|+.++|...|++|+...|...
T Consensus 525 ~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~ 568 (681)
T 2pzi_A 525 TVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT 568 (681)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH
T ss_pred HHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH
Confidence 99999999999999999999999999999999999999999865
No 89
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.25 E-value=6.6e-10 Score=113.12 Aligned_cols=235 Identities=10% Similarity=-0.039 Sum_probs=177.4
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.|...|.++...|+++.|...|++|+...+. .+....++..++.+....| +++.|
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~----------------------~~~~A 160 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK----------------------QTHVS 160 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC----------------------CcHHH
Confidence 5777788889999999999999999987542 2223566777777777777 99999
Q ss_pred HHHHHHHHhcCCh-----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC------CCHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPK-----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP------NNYDAWFDYLRLL 257 (521)
Q Consensus 189 r~iy~~aL~~~P~-----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P------~~~~~W~~y~~~~ 257 (521)
...|++|++..+. ......+..++......|+.+.|... |++++...+ ....++..++.++
T Consensus 161 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~lg~~y 232 (378)
T 3q15_A 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPH--------LEAALELAMDIQNDRFIAISLLNIANSY 232 (378)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9999999987442 12346777888888899999999877 899988633 1246788999999
Q ss_pred HHcCCHHHHHHHHHHHHH-----cCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC--C-CcHHHHHHHHHHHHh
Q psy8681 258 EDEGNADLIRETYERAIA-----NIPPTK-----FAELESLLGDMERARAIYELAISQPRL--D-MPELVWKAYIDFEVG 324 (521)
Q Consensus 258 ~~~g~~~~Ar~~~erAl~-----~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~--~-~~~~lw~~yi~~e~~ 324 (521)
...|++++|...|++|+. ..|... ++.++..+|+++.|...|++++...+. + ........+..+...
T Consensus 233 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~ 312 (378)
T 3q15_A 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKE 312 (378)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSS
T ss_pred HHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence 999999999999999999 555443 577888999999999999999983211 1 112233444445556
Q ss_pred cCC---hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhc
Q psy8681 325 QGE---RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALK 379 (521)
Q Consensus 325 ~g~---~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~ 379 (521)
.|+ +.+|...+++.-.......++..++.++...|+ ++.|...|++++....
T Consensus 313 ~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~---~~~A~~~~~~al~~~~ 367 (378)
T 3q15_A 313 TVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCH---FEQAAAFYRKVLKAQE 367 (378)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHH
Confidence 677 677777776621111235677889999999998 9999999999998754
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=2e-10 Score=112.81 Aligned_cols=139 Identities=10% Similarity=-0.036 Sum_probs=115.9
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| +...+...+..+...|+++.|...|++++...| .++.++..++......| ++
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~la~~~~~~g----------------------~~ 167 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN---QNGEIGLLLAETLIALN----------------------RS 167 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT---SCHHHHHHHHHHHHHTT----------------------CH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC---cchhHHHHHHHHHHHCC----------------------CH
Confidence 37 578999999999999999999999999999965 46789999999999888 99
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~ 265 (521)
++|..+|++++...|... ..+..........|....+... |++++..+|.+..+|+.++.++...|++++
T Consensus 168 ~~A~~~l~~~~~~~p~~~--~~~~~~~~~l~~~~~~~~a~~~--------l~~al~~~P~~~~~~~~la~~l~~~g~~~~ 237 (287)
T 3qou_A 168 EDAEAVLXTIPLQDQDTR--YQGLVAQIELLXQAADTPEIQQ--------LQQQVAENPEDAALATQLALQLHQVGRNEE 237 (287)
T ss_dssp HHHHHHHTTSCGGGCSHH--HHHHHHHHHHHHHHTSCHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCchhhcchH--HHHHHHHHHHHhhcccCccHHH--------HHHHHhcCCccHHHHHHHHHHHHHcccHHH
Confidence 999999999999999543 2222222223344445555544 999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCch
Q psy8681 266 IRETYERAIANIPPT 280 (521)
Q Consensus 266 Ar~~~erAl~~~P~~ 280 (521)
|...|.+++...|..
T Consensus 238 A~~~l~~~l~~~p~~ 252 (287)
T 3qou_A 238 ALELLFGHLRXDLTA 252 (287)
T ss_dssp HHHHHHHHHHHCTTG
T ss_pred HHHHHHHHHhccccc
Confidence 999999999988864
No 91
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=3e-10 Score=111.74 Aligned_cols=188 Identities=16% Similarity=0.081 Sum_probs=142.5
Q ss_pred hHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDY 253 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y 253 (521)
+++.|...|.+|+...+. ......|...+......|+.+.|... |++++...|.. ..+|..+
T Consensus 52 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~--------~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS--------LENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 889999999999887432 12246788889999999999999877 99999987643 4689999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc-----HHHHH
Q psy8681 254 LRLLEDE-GNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRLDMP-----ELVWK 316 (521)
Q Consensus 254 ~~~~~~~-g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~~~~-----~~lw~ 316 (521)
+.++... |++++|...|++|+...|... ++.+...+|+++.|...|++++...+.... ...|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 9999996 999999999999999877531 577788999999999999999996543211 12566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCCC-HH-----HHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTVH-VK-----VWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~-----vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..+..+...|+++.|+..|++++...|. .. .+..++..+. .++.+++..|...|++++...|.
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~-~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN-EGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH-TTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHhccCCccHHH
Confidence 6777788899999999999999998763 22 2333444332 23445588999999888776554
No 92
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.22 E-value=5.8e-10 Score=113.52 Aligned_cols=221 Identities=10% Similarity=0.012 Sum_probs=170.8
Q ss_pred HHhcccchhhHHH-HhhhccCCC---C----ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----cHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRD---S----DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----DEKLFIAF 153 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~---P----~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~~~lw~~~ 153 (521)
+...|+++.|... ++++ ... + ...++..+|.++...|+++.|...|++|+...+.... ...++..+
T Consensus 111 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 188 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAE--KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188 (378)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHH--HHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence 3456677777777 7776 542 2 2678999999999999999999999999998653222 24556667
Q ss_pred HHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 154 AKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPK----DRTAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 154 a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~----~~~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
+......| +++.|...|++|+...+. .....++..++......|+.+.|...
T Consensus 189 g~~y~~~~----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~-- 244 (378)
T 3q15_A 189 AGNYDDFK----------------------HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH-- 244 (378)
T ss_dssp HHHHHHTT----------------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH--
T ss_pred HHHHHHhC----------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH--
Confidence 77777776 999999999999986432 12235677788888889999999877
Q ss_pred hhHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----------HHHHHHHcCC---
Q psy8681 230 SKRKFQYEEEVN-----SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----------FAELESLLGD--- 291 (521)
Q Consensus 230 ~krr~~ye~al~-----~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----------~a~le~~~g~--- 291 (521)
|++++. .+|....++..++..+...|+.++|...|++|+...+... ++.+....|+
T Consensus 245 ------~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~ 318 (378)
T 3q15_A 245 ------FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK 318 (378)
T ss_dssp ------HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHH
T ss_pred ------HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHH
Confidence 999998 7888899999999999999999999999999999865422 3445556677
Q ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Q psy8681 292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341 (521)
Q Consensus 292 ~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~ 341 (521)
+..|...|+..-..+ ....++...+.++...|++++|...|++++..
T Consensus 319 ~~~al~~~~~~~~~~---~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 319 IHDLLSYFEKKNLHA---YIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHHHHHTTCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCChh---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777877777632111 12456777888899999999999999999875
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.21 E-value=6.5e-10 Score=104.77 Aligned_cols=186 Identities=9% Similarity=0.005 Sum_probs=118.9
Q ss_pred HhcccchhhHHH-HhhhccCCCC-C---hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-D---TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~---~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
.+.|+++.|+.. ++++ ..+| + ...|..+|..+...|+++.|+..|++++...|+.+..+..+...+......+
T Consensus 15 ~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 15 LQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 345677777777 7999 8888 4 3689999999999999999999999999998865433345555554443322
Q ss_pred hhccccchhhHHH--HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHH
Q psy8681 162 EKYGDRAGIEDVI--VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 162 ~~~~~~~~~~~~~--l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~a 239 (521)
. . ....+ +.......++++.|...|+++++..|.+. ..+.++..+....+ .
T Consensus 93 ~---~---~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~--~a~~a~~~l~~~~~-------------------~ 145 (225)
T 2yhc_A 93 D---S---ALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQ--YTTDATKRLVFLKD-------------------R 145 (225)
T ss_dssp C--------------------CCHHHHHHHHHHHHHHTTCTTCT--THHHHHHHHHHHHH-------------------H
T ss_pred h---h---hhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCCh--hHHHHHHHHHHHHH-------------------H
Confidence 0 0 00000 01111223589999999999999999876 34433322111100 0
Q ss_pred HhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--------HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--------FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--------~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
-....+.++.++...|++..|...|++++...|.+. .+..+..+|+.+.|+..|+.+...+|
T Consensus 146 ------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 146 ------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp ------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred ------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 012234566777777777777777777777777654 45556677777777777777766544
No 94
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.21 E-value=2e-09 Score=106.67 Aligned_cols=234 Identities=10% Similarity=0.021 Sum_probs=170.7
Q ss_pred cccc-hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC--ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 89 DKER-DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG--FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 89 ~g~~-e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g--~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.|++ ++|..+ +++| ..+| ...+|..-+.+....| .++++...++.++...| .+..+|..-..........
T Consensus 45 ~~e~s~~aL~~t~~~L--~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP---k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 45 AEEYSERALHITELGI--NELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE---KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp TTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT---TCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH--HHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc---ccHHHHHHHHHHHHHHHHh
Confidence 4445 579999 9999 9999 7899999999999999 99999999999999966 4677888776655221100
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChh--hHHHHHHhhHHHHHHHHHh
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA--GIEDVIVSKRKFQYEEEVN 241 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~--~a~~~i~~krr~~ye~al~ 241 (521)
.+. .+.++++..++.++|+.+|.+. .+|.--.-+....|..+ ..... ++++|.
T Consensus 120 l~~---------------~~~~~~EL~~~~~~l~~~pkny--~aW~~R~~vl~~l~~~~~~~EL~~--------~~~~i~ 174 (306)
T 3dra_A 120 NNN---------------DFDPYREFDILEAMLSSDPKNH--HVWSYRKWLVDTFDLHNDAKELSF--------VDKVID 174 (306)
T ss_dssp TTT---------------CCCTHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCTTCHHHHHH--------HHHHHH
T ss_pred ccc---------------cCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhcccChHHHHHH--------HHHHHH
Confidence 000 0167899999999999999987 78877777777788776 55555 999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCchh-----HHHHHHHcCC-HHHHHHHHHHHHcCC-CC
Q psy8681 242 SNPNNYDAWFDYLRLLEDEGN------ADLIRETYERAIANIPPTK-----FAELESLLGD-MERARAIYELAISQP-RL 308 (521)
Q Consensus 242 ~~P~~~~~W~~y~~~~~~~g~------~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~-~e~Ar~ife~al~~~-~~ 308 (521)
.+|.|+.+|...+.++...+. ++++...+.++|...|.+. ...+....|. .+.+..++..++... ..
T Consensus 175 ~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 175 TDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp HCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred hCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 999999999999888887776 7888888888888888765 2334445554 333445555555432 00
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh-cCC-CHHHHHHHH
Q psy8681 309 DMPELVWKAYIDFEVGQGERDKVRELHERLLE-RTV-HVKVWMNYA 352 (521)
Q Consensus 309 ~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~-~~~-~~~vwi~ya 352 (521)
..+..+|...++.+.+.|+.++|.++|+.+.. ..| ....|...+
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence 01345566666666677888888888888876 455 566776443
No 95
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.21 E-value=3.7e-09 Score=120.73 Aligned_cols=287 Identities=15% Similarity=0.043 Sum_probs=202.2
Q ss_pred HHHHhcCChhhhhhhcC---CCcH-----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANK---ENEE-----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYER 135 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife---~P~~-----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~ 135 (521)
.+....|.+++|..+|+ .+.. ....|++++|..+ +|+- ++.+|..+|......|.+++|...|.+
T Consensus 1057 ~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiK 1130 (1630)
T 1xi4_A 1057 NIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK 1130 (1630)
T ss_pred HHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 46678999999999998 3333 3377899999999 8765 478999999999999999999999988
Q ss_pred HHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHH
Q psy8681 136 AVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHE 215 (521)
Q Consensus 136 Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e 215 (521)
| .++..|...+.+....| +++.|...|..|.+..|... +...++...
T Consensus 1131 A--------dD~say~eVa~~~~~lG----------------------kyEEAIeyL~mArk~~~e~~---Idt~LafaY 1177 (1630)
T 1xi4_A 1131 A--------DDPSSYMEVVQAANTSG----------------------NWEELVKYLQMARKKARESY---VETELIFAL 1177 (1630)
T ss_pred c--------CChHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHhhccccc---ccHHHHHHH
Confidence 7 25678888999998888 99999999999998875532 112233223
Q ss_pred HHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHH
Q psy8681 216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295 (521)
Q Consensus 216 ~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~A 295 (521)
.+.|..+.++ ..+ ..| +...|...+..+.+.|++++|...|.+|-.. ...+..+..+|+++.|
T Consensus 1178 AKl~rleele------------~fI-~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~ny---~rLA~tLvkLge~q~A 1240 (1630)
T 1xi4_A 1178 AKTNRLAELE------------EFI-NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF---GRLASTLVHLGEYQAA 1240 (1630)
T ss_pred HhhcCHHHHH------------HHH-hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhhHH---HHHHHHHHHhCCHHHH
Confidence 3335544332 223 233 4567778999999999999999999997321 1146667788999999
Q ss_pred HHHHHHHHcCCCC-----------------------CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHH
Q psy8681 296 RAIYELAISQPRL-----------------------DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNY 351 (521)
Q Consensus 296 r~ife~al~~~~~-----------------------~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~y 351 (521)
..++.+|.....+ ..++......+.++...|.+++|+.+|+.+|...+ |..+|-.+
T Consensus 1241 IEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftEL 1320 (1630)
T 1xi4_A 1241 VDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTEL 1320 (1630)
T ss_pred HHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHH
Confidence 9999888442110 00112233455667788999999999999998876 77788777
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAK 409 (521)
Q Consensus 352 a~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~ 409 (521)
+..+.+..- ++..++...|...+..-|- -..-+...+|..+.-+=..+|+.+.+-.
T Consensus 1321 aiLyaKy~p-eklmEhlk~f~~rini~k~-~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKP-QKMREHLELFWSRVNIPKV-LRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCH-HHHHHHHHHHHHhcccchH-hHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 777776543 4466666677766654331 0011335678888777778888876543
No 96
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.20 E-value=3e-10 Score=122.34 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=128.3
Q ss_pred cccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 89 DKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
.|++++|... ++++ ..+| +...|..++..+...|++++|...|++++...| .+..+|..++......|
T Consensus 2 ~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g----- 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAV--RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP---GHPEAVARLGRVRWTQQ----- 71 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST---TCHHHHHHHHHHHHHTT-----
T ss_pred CccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCC-----
Confidence 3678888888 8999 9999 799999999999999999999999999999865 46789999999998888
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
++++|...|+++++..|.+. ..|..++......|+.+.|... |++++..+|.+
T Consensus 72 -----------------~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~p~~ 124 (568)
T 2vsy_A 72 -----------------RHAEAAVLLQQASDAAPEHP--GIALWLGHALEDAGQAEAAAAA--------YTRAHQLLPEE 124 (568)
T ss_dssp -----------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTC
T ss_pred -----------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCC
Confidence 99999999999999999886 7889999999999999999877 99999999999
Q ss_pred HHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcCCchh
Q psy8681 247 YDAWFDYLRLLEDE---GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 247 ~~~W~~y~~~~~~~---g~~~~Ar~~~erAl~~~P~~~ 281 (521)
..+|..++..+... |+.++|...|++++...|...
T Consensus 125 ~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 162 (568)
T 2vsy_A 125 PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCccc
Confidence 99999999999999 999999999999999998754
No 97
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.20 E-value=2.6e-10 Score=101.08 Aligned_cols=114 Identities=8% Similarity=-0.063 Sum_probs=99.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|++++..+|.+..+|+.++..+...|++++|...|++++...|. ...+|
T Consensus 25 l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-------------------------------~~~~~ 73 (151)
T 3gyz_A 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-------------------------------NVDYI 73 (151)
T ss_dssp TGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------------------------CHHHH
Confidence 77788889999999999999999999999999999999888774 24678
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
...+..+...|++++|...|++++...| ++.+|..++..+...|+ ++.|...|++|+...|+++.
T Consensus 74 ~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~---~~eA~~~~~~al~l~~~~~~ 139 (151)
T 3gyz_A 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA---PLKAKECFELVIQHSNDEKL 139 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCHHH
Confidence 8888888889999999999999999887 68899999999998888 99999999999998887643
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.19 E-value=5.6e-10 Score=109.62 Aligned_cols=164 Identities=7% Similarity=-0.011 Sum_probs=142.0
Q ss_pred CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 199 IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 199 ~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
.|.+. ..+...+......|+.+.|... |++++..+|.+..+|..++.++...|++++|..+|++++...|
T Consensus 113 lp~~~--~~~~~~a~~~~~~g~~~~A~~~--------~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p 182 (287)
T 3qou_A 113 LPREE--ELXAQQAMQLMQESNYTDALPL--------LXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ 182 (287)
T ss_dssp SCCHH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC
T ss_pred cCCch--hhHHHHHHHHHhCCCHHHHHHH--------HHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc
Confidence 47655 6677777777889999999877 9999999999999999999999999999999999999999989
Q ss_pred chhH-----HHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-C--HHHHHH
Q psy8681 279 PTKF-----AELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-H--VKVWMN 350 (521)
Q Consensus 279 ~~~~-----a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~--~~vwi~ 350 (521)
...+ +......|..+.|...|++++...|. ...+|..++..+...|+++.|...|.+++...| + ..+|..
T Consensus 183 ~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 183 DTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp SHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred chHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 6542 22234567788899999999996664 367999999999999999999999999999987 3 789999
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 351 YAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 351 ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
++.++...|+ .+.|...|++++..
T Consensus 261 l~~~~~~~g~---~~~a~~~~r~al~~ 284 (287)
T 3qou_A 261 FQEILAALGT---GDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHCT---TCHHHHHHHHHHHH
T ss_pred HHHHHHHcCC---CCcHHHHHHHHHHH
Confidence 9999999998 89999999999864
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.18 E-value=1.4e-09 Score=91.44 Aligned_cols=134 Identities=19% Similarity=0.208 Sum_probs=119.4
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..|..++..+...|+++.|..+|++++...| .+..+|..++......+ +++.|..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A~~ 56 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP---RSAEAWYNLGNAYYKQG----------------------DYDEAIE 56 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCC---cchhHHHHHHHHHHHhc----------------------CHHHHHH
Confidence 4688999999999999999999999999854 35678888888877777 9999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY 270 (521)
Q Consensus 191 iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~ 270 (521)
+|++++...|... .+|..++......|+.+.+... |++++..+|.+..+|..++..+...|+++.|...|
T Consensus 57 ~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 126 (136)
T 2fo7_A 57 YYQKALELDPRSA--EAWYNLGNAYYKQGDYDEAIEY--------YQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYY 126 (136)
T ss_dssp HHHHHHHHCTTCH--HHHHHHHHHHHTTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHCCCch--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHH
Confidence 9999999988875 6788888888889999988877 99999999999999999999999999999999999
Q ss_pred HHHHHcCCc
Q psy8681 271 ERAIANIPP 279 (521)
Q Consensus 271 erAl~~~P~ 279 (521)
++++...|.
T Consensus 127 ~~~~~~~~~ 135 (136)
T 2fo7_A 127 QKALELDPR 135 (136)
T ss_dssp HHHHHHSTT
T ss_pred HHHHccCCC
Confidence 999998875
No 100
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.16 E-value=2.2e-10 Score=103.61 Aligned_cols=154 Identities=12% Similarity=0.073 Sum_probs=126.2
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
..+.|+++.|... ++++ ..+| ++..|..++.++...|++++|..+|++++...| ++.++...+.+.....
T Consensus 16 ~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p----~~~~~~~~~~~~~~~~-- 87 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ----DNSYKSLIAKLELHQQ-- 87 (176)
T ss_dssp HHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC----CHHHHHHHHHHHHHHH--
T ss_pred HHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC----ChHHHHHHHHHHHHhh--
Confidence 3456777788888 8999 9999 799999999999999999999999999998855 3334333332221110
Q ss_pred ccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC
Q psy8681 164 YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243 (521)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~ 243 (521)
+....|...|++++...|.+. .++..++......|+.+.+... |++++..+
T Consensus 88 -------------------~~~~~a~~~~~~al~~~P~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~~l~~~ 138 (176)
T 2r5s_A 88 -------------------AAESPELKRLEQELAANPDNF--ELACELAVQYNQVGRDEEALEL--------LWNILKVN 138 (176)
T ss_dssp -------------------HTSCHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTC
T ss_pred -------------------cccchHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHhC
Confidence 023347889999999999987 8899999999999999999877 99999999
Q ss_pred CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 244 PNN--YDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 244 P~~--~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
|.. ..+|..++.++...|+.++|...|++++..
T Consensus 139 p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~~ 173 (176)
T 2r5s_A 139 LGAQDGEVKKTFMDILSALGQGNAIASKYRRQLYS 173 (176)
T ss_dssp TTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred cccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 975 669999999999999999999999999864
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.12 E-value=1.3e-09 Score=93.28 Aligned_cols=117 Identities=15% Similarity=-0.022 Sum_probs=106.9
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
.+.| ....|...|..+.+.|++++|...|++|+...| .++.+|..++......|
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~~~~~~~~~~---------------------- 61 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP---ENAILYSNRAACLTKLM---------------------- 61 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHhhHHHhhc----------------------
Confidence 6678 578999999999999999999999999999965 47889999999998888
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
+++.|...|+++|+..|.+. ..|..++......|+.+.|... |++++..+|.+.+++..++.+
T Consensus 62 ~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~~~~~~A~~~--------~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 62 EFQRALDDCDTCIRLDSKFI--KGYIRKAACLVAMREWSKAQRA--------YEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhhh--HHHHHHHHHHHHCCCHHHHHHH--------HHHHHHHCcCCHHHHHHHHHh
Confidence 99999999999999999987 7899999999999999999877 999999999999999888765
No 102
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.10 E-value=1.7e-09 Score=116.56 Aligned_cols=151 Identities=9% Similarity=-0.004 Sum_probs=122.4
Q ss_pred CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHH
Q psy8681 219 GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDME 293 (521)
Q Consensus 219 G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e 293 (521)
|+.+.|... |++++..+|.+..+|..++..+...|++++|...|++|+...|.+. ++.++..+|+++
T Consensus 3 g~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~ 74 (568)
T 2vsy_A 3 ADGPRELLQ--------LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHA 74 (568)
T ss_dssp --------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHH
T ss_pred ccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 455566655 9999999999999999999999999999999999999999999865 677888999999
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHc---CCchhhHHHHH
Q psy8681 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSS---GDEDSVSLARR 369 (521)
Q Consensus 294 ~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~---g~~~~~~~AR~ 369 (521)
.|...|++++...|. ...+|..++..+...|++++|...|+++++..| ++.+|..++..+... |+ .+.|..
T Consensus 75 ~A~~~~~~al~~~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~---~~~A~~ 149 (568)
T 2vsy_A 75 EAAVLLQQASDAAPE--HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRA---LDVLSA 149 (568)
T ss_dssp HHHHHHHHHHHHCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTT---HHHHHH
T ss_pred HHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccc---HHHHHH
Confidence 999999999997654 367899999999999999999999999999987 688999999999999 77 999999
Q ss_pred HHHHHHHHhccch
Q psy8681 370 VFERANQALKASS 382 (521)
Q Consensus 370 vferAl~~~~~~~ 382 (521)
.|++++...|.+.
T Consensus 150 ~~~~al~~~p~~~ 162 (568)
T 2vsy_A 150 QVRAAVAQGVGAV 162 (568)
T ss_dssp HHHHHHHHTCCCS
T ss_pred HHHHHHhcCCccc
Confidence 9999999998763
No 103
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.08 E-value=7.1e-08 Score=96.24 Aligned_cols=241 Identities=10% Similarity=-0.055 Sum_probs=162.9
Q ss_pred hcccch-hhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 88 RDKERD-REEED-ERKDEGDRDS-DTTYGMRELVFEEQNGF----------VSGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 88 r~g~~e-~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~----------~~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
+.|++. +|..+ +.++ ..+| +..+|..-..+....+. ++++...++.++...| .+..+|..-+
T Consensus 41 ~~~e~s~eaL~~t~~~L--~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P---Kny~aW~hR~ 115 (331)
T 3dss_A 41 QAGELDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRC 115 (331)
T ss_dssp HTTCCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 345665 78999 9999 9999 78999999988877654 6788889999988855 5788998877
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCCh-hhHHHHHHhhHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR-AGIEDVIVSKRK 233 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~-~~a~~~i~~krr 233 (521)
-+....+ . ..++.+..++.++++.+|.+. ..|.--.-+....|.. +.+...
T Consensus 116 wlL~~l~----~----------------~~~~~EL~~~~k~l~~dprNy--~AW~~R~~vl~~l~~~~~eel~~------ 167 (331)
T 3dss_A 116 WLLSRLP----E----------------PNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF------ 167 (331)
T ss_dssp HHHHHCS----S----------------CCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCCHHHHHHH------
T ss_pred HHHhccC----c----------------ccHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhCcCHHHHHHH------
Confidence 6665554 0 037899999999999999988 7777666666677863 555555
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHH
Q psy8681 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPEL 313 (521)
Q Consensus 234 ~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~ 313 (521)
+.++|..+|.|+.+|...+.++...+....+- .....+ .+.++++...+..++...|.+ ..
T Consensus 168 --~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~-----~~~~~~----------~~~~~eEle~~~~ai~~~P~d--~S 228 (331)
T 3dss_A 168 --TDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG-----PQGRLP----------ENVLLKELELVQNAFFTDPND--QS 228 (331)
T ss_dssp --HHHHHHHCSCCHHHHHHHHHHHHHHSCCC-----------CCC----------HHHHHHHHHHHHHHHHHSTTC--HH
T ss_pred --HHHHHHHCCCCHHHHHHHHHHHHHhhhccccc-----cccccc----------hHHHHHHHHHHHHHHHhCCCC--HH
Confidence 99999999999999999988887653210000 000000 022344455555555544432 44
Q ss_pred HHHHHHHHHHhc-----------CChHHHHHHHHHHHhcCCCHHHHHH--HHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 314 VWKAYIDFEVGQ-----------GERDKVRELHERLLERTVHVKVWMN--YAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 314 lw~~yi~~e~~~-----------g~~~~Ar~l~eral~~~~~~~vwi~--ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
+|.-.--+.... +.++++++.+..+++..|+. .|.. ++.+.......+..++++.++.+.++..|.
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~ 307 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM 307 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence 554222222121 35789999999999999865 4544 333322221123377899999999999886
Q ss_pred c
Q psy8681 381 S 381 (521)
Q Consensus 381 ~ 381 (521)
.
T Consensus 308 r 308 (331)
T 3dss_A 308 R 308 (331)
T ss_dssp G
T ss_pred h
Confidence 4
No 104
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.07 E-value=1.2e-08 Score=106.75 Aligned_cols=282 Identities=13% Similarity=0.043 Sum_probs=179.8
Q ss_pred HHHhcCChhhhhhhcC------CCcH-------HHhcccc---hhhHHH-HhhhccCCCCChhhHHHHHHHHHHcC----
Q psy8681 66 MEEKQGNKIGEEGANK------ENEE-------EERDKER---DREEED-ERKDEGDRDSDTTYGMRELVFEEQNG---- 124 (521)
Q Consensus 66 ~e~~~gn~~~Ar~ife------~P~~-------e~r~g~~---e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g---- 124 (521)
+....|+++.|..+|+ +|.. +...|.+ +.|... ++++ .. ++..+..++.++...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~--~~--~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAA--DT--SPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHH--hC--CHHHHHHHHHHHHhCCCCCC
Confidence 4456678888888887 3333 5556777 899999 9998 66 6667888888555544
Q ss_pred -ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhh--------------HHHHHhhhhhh----hhH
Q psy8681 125 -FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE--------------DVIVSKRKFQY----EEH 185 (521)
Q Consensus 125 -~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~--------------~~~l~~~~~~~----~~~ 185 (521)
++++|...|++|+..- ++..+..++.+....+ .+....... ...|+..+... ...
T Consensus 88 ~~~~~A~~~~~~Aa~~g-----~~~A~~~Lg~~y~~~~-~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANG-----EGNTLIPLAMLYLQYP-HSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHHTT-----CSSCHHHHHHHHHHCG-GGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred cCHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 7789999999999852 2235666776665444 111111100 01112222222 256
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC---ChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc--
Q psy8681 186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG---DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-- 260 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G---~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~-- 260 (521)
+.+..+++.+....|. .+..++.+....| +...+... |++++...|.+...|+.++.++...
T Consensus 162 ~~a~~~~~~a~~~~~~-----a~~~Lg~~~~~~g~~~~~~~A~~~--------~~~aa~~g~~~a~~~~~Lg~~y~~g~~ 228 (452)
T 3e4b_A 162 DDVERICKAALNTTDI-----CYVELATVYQKKQQPEQQAELLKQ--------MEAGVSRGTVTAQRVDSVARVLGDATL 228 (452)
T ss_dssp HHHHHHHHHHTTTCTT-----HHHHHHHHHHHTTCHHHHHHHHHH--------HHHHHHTTCSCHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHcCCHH-----HHHHHHHHHHHcCCcccHHHHHHH--------HHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 6678888888877775 4555666666688 56666655 9999999999999999999998665
Q ss_pred --CCHHHHHHHHHHHHHcCCchh--HHHH-H--HHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC-----Ch
Q psy8681 261 --GNADLIRETYERAIANIPPTK--FAEL-E--SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG-----ER 328 (521)
Q Consensus 261 --g~~~~Ar~~~erAl~~~P~~~--~a~l-e--~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g-----~~ 328 (521)
+++++|...|++|....|... ++.+ + ...|+++.|...|++++.... ...+..++.++. .| ++
T Consensus 229 ~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~----~~A~~~Lg~~y~-~G~g~~~d~ 303 (452)
T 3e4b_A 229 GTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQ----PRAELLLGKLYY-EGKWVPADA 303 (452)
T ss_dssp SSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTC----HHHHHHHHHHHH-HCSSSCCCH
T ss_pred CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCC----HHHHHHHHHHHH-cCCCCCCCH
Confidence 689999999999982222221 4555 3 458999999999999998642 345666666655 56 99
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHH
Q psy8681 329 DKVRELHERLLERTVHVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 329 ~~Ar~l~eral~~~~~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~ 377 (521)
++|...|++++ ..++..+..++.++.. .|...++++|..+|++|...
T Consensus 304 ~~A~~~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 304 KAAEAHFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 99999999999 5688899999987765 22234599999999999874
No 105
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.06 E-value=2.9e-10 Score=100.76 Aligned_cols=88 Identities=14% Similarity=0.062 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. ..|..++......|+.+.|... |++++..+|.++.+|+.++..+...|++
T Consensus 51 ~~~eA~~~~~~al~~~P~~~--~~~~~lg~~~~~~g~~~~Ai~~--------~~~al~l~P~~~~~~~~lg~~~~~lg~~ 120 (151)
T 3gyz_A 51 RIEEAEVFFRFLCIYDFYNV--DYIMGLAAIYQIKEQFQQAADL--------YAVAFALGKNDYTPVFHTGQCQLRLKAP 120 (151)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHccHHHHHHH--------HHHHHhhCCCCcHHHHHHHHHHHHcCCH
Confidence 66666666666666666655 5666666666666666666655 7777777777778888888888888888
Q ss_pred HHHHHHHHHHHHcCCchh
Q psy8681 264 DLIRETYERAIANIPPTK 281 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~ 281 (521)
++|...|++|+...|++.
T Consensus 121 ~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 121 LKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHHHHhCCCHH
Confidence 888888888888777643
No 106
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.06 E-value=4.6e-09 Score=103.91 Aligned_cols=213 Identities=15% Similarity=0.108 Sum_probs=155.0
Q ss_pred hhHHHHHHHHHHHHhcCCh---------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------H
Q psy8681 183 EEHERARVIYKYALDHIPK---------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------Y 247 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~---------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~ 247 (521)
+++++|..++++|.+..+. .....+|...+......|+.+.+... |++++...+.. .
T Consensus 5 ~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~--------~~~al~~~~~~~~~~~~a 76 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDA--------YLQEAEAHANNRSLFHAA 76 (307)
T ss_dssp HHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHHcCCHHHHH
Confidence 4777888888877764332 11234666666777788998888876 88888876532 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCCCC----CcH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPRLD----MPE 312 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~~~----~~~ 312 (521)
.++..++.++...|++++|...|++|+...+... .+.++.. |+++.|...|++++...+.. ...
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 5788999999999999999999999998743211 4566667 99999999999999842211 114
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC---C----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchhhH
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV---H----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKE 385 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~---~----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~~~ 385 (521)
.++..++.++...|++++|...|++++...+ . ...|+..+......|+ ++.|...|++++ ..|......
T Consensus 156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~---~~~A~~~~~~al-~~p~~~~~~ 231 (307)
T 2ifu_A 156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRAD---YVAAQKCVRESY-SIPGFSGSE 231 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHT-TSTTSTTSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHh-CCCCCCCCH
Confidence 5778888899999999999999999999753 1 3467778888888888 999999999999 888654322
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 386 ERVMLLEAWKEFEAQHGDDESRAKL 410 (521)
Q Consensus 386 ~~~~l~~~~~~fE~~~G~~~~~~~v 410 (521)
+...+......+ ..|+.+.+..+
T Consensus 232 e~~~l~~l~~~~--~~~d~~~~~~~ 254 (307)
T 2ifu_A 232 DCAALEDLLQAY--DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHHHHHHH--HTTCHHHHHHH
T ss_pred HHHHHHHHHHHH--HhcCHHHHHHH
Confidence 222222222222 36888777774
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.06 E-value=5.8e-08 Score=96.10 Aligned_cols=230 Identities=10% Similarity=0.003 Sum_probs=177.9
Q ss_pred HHHHHHHHHcCCh-hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 114 MRELVFEEQNGFV-SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 114 ~~~a~~e~~~g~~-~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
..+.......|.+ ++|..+++++|...| ....+|..-+......+. ..++++...+
T Consensus 36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP---~~~taWn~R~~~L~~l~~--------------------~~~~eeL~~~ 92 (306)
T 3dra_A 36 MGLLLALMKAEEYSERALHITELGINELA---SHYTIWIYRFNILKNLPN--------------------RNLYDELDWC 92 (306)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTCTT--------------------SCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCc---HHHHHHHHHHHHHHHccc--------------------ccHHHHHHHH
Confidence 3444444455554 699999999999966 467889887776654430 1789999999
Q ss_pred HHHHhcCChhhHHHHHHHHHHHH----HHc---CChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH-
Q psy8681 193 KYALDHIPKDRTAEIYKAYTIHE----KKY---GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNAD- 264 (521)
Q Consensus 193 ~~aL~~~P~~~~~~l~~~~~~~e----~~~---G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~- 264 (521)
..+|..+|.+. .+|.--..+. ... ++......+ +++++..+|.++.+|..-+-++...|..+
T Consensus 93 ~~~L~~nPk~y--~aW~~R~~iL~~~~~~l~~~~~~~~EL~~--------~~~~l~~~pkny~aW~~R~~vl~~l~~~~~ 162 (306)
T 3dra_A 93 EEIALDNEKNY--QIWNYRQLIIGQIMELNNNDFDPYREFDI--------LEAMLSSDPKNHHVWSYRKWLVDTFDLHND 162 (306)
T ss_dssp HHHHHHCTTCC--HHHHHHHHHHHHHHHHTTTCCCTHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCTTC
T ss_pred HHHHHHCcccH--HHHHHHHHHHHHHHHhccccCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhcccCh
Confidence 99999999987 7777665554 444 556666655 99999999999999999999999999888
Q ss_pred -HHHHHHHHHHHcCCchh-----HHHHHHHcCC------HHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCC-hHHH
Q psy8681 265 -LIRETYERAIANIPPTK-----FAELESLLGD------MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGE-RDKV 331 (521)
Q Consensus 265 -~Ar~~~erAl~~~P~~~-----~a~le~~~g~------~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~-~~~A 331 (521)
++...+++++...|.+. -..+...+|. ++++...+..+|...|.+ ..+|.-...++...|. .+.+
T Consensus 163 ~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n--~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 163 AKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN--PSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC--HHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC--ccHHHHHHHHHHhcCCChHHH
Confidence 99999999999999875 1233445565 899999999999976654 6799877777777776 4556
Q ss_pred HHHHHHHHhcC----CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH-Hhccc
Q psy8681 332 RELHERLLERT----VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ-ALKAS 381 (521)
Q Consensus 332 r~l~eral~~~----~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~-~~~~~ 381 (521)
...+.+++... .++.+|..++..+...|+ .++|..+|+++.. ..|..
T Consensus 241 ~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~---~~~A~~~~~~l~~~~Dpir 292 (306)
T 3dra_A 241 EEFSLQFVDLEKDQVTSSFALETLAKIYTQQKK---YNESRTVYDLLKSKYNPIR 292 (306)
T ss_dssp HHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCGGG
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHhccChHH
Confidence 66777777653 367888888888888887 9999999999987 56653
No 108
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.05 E-value=2.8e-09 Score=91.65 Aligned_cols=117 Identities=15% Similarity=0.149 Sum_probs=96.3
Q ss_pred CCC-ChhhHHHHHHHHHHcCCh------hHHHHHHHHHHHhcCCccc-----cHHHHHHHHHHHHhhhhhccccchhhHH
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFV------SGARKVYERAVEFFGEENL-----DEKLFIAFAKFEEGQREKYGDRAGIEDV 173 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~------~~Ar~vye~Al~~~~~~~~-----~~~lw~~~a~~e~~~~~~~~~~~~~~~~ 173 (521)
..| +++.|..|+.+++..|+. ++.+.+|++|+..+|.... ...+|+.||.|+. .+
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~------------ 74 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQ------------ 74 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HH------------
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hc------------
Confidence 467 899999999999999999 9999999999999874321 2678899998854 35
Q ss_pred HHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 174 IVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 174 ~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
+.++||.+|+.|+..+. .. ..+|..|+.||.+.|+...|..+ +.+++..+|....+.-..
T Consensus 75 ----------D~d~aR~vy~~a~~~hK-kF-AKiwi~~AqFEiRqgnl~kARkI--------Lg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 75 ----------EPDDARDYFQMARANCK-KF-AFVHISFAQFELSQGNVKKSKQL--------LQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp ----------CGGGCHHHHHHHHHHCT-TB-HHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTTCBCHHHHHHH
T ss_pred ----------CHHHHHHHHHHHHHHhH-HH-HHHHHHHHHHHHHcccHHHHHHH--------HHHHhccCCCcHHHHHHH
Confidence 89999999999998733 33 59999999999999999998877 999999999876665444
Q ss_pred HH
Q psy8681 254 LR 255 (521)
Q Consensus 254 ~~ 255 (521)
++
T Consensus 135 ~~ 136 (161)
T 4h7y_A 135 LR 136 (161)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 109
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.2e-08 Score=85.63 Aligned_cols=128 Identities=20% Similarity=0.287 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHH
Q psy8681 248 DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFE 322 (521)
Q Consensus 248 ~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e 322 (521)
.+|..++..+...|++++|..+|++++...|... ++.+....|+++.|..+|++++...+. ...+|..++..+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~ 79 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--chHHHHHHHHHH
Confidence 4688899999999999999999999999888755 566777889999999999999986543 356888889999
Q ss_pred HhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 323 VGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 323 ~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
...|+++.|..+|++++...| ++.+|..++..+...|+ ++.|..+|++++...|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~---~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGD---YDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHcc---HHHHHHHHHHHHccCCC
Confidence 999999999999999999886 68899999999999988 99999999999988774
No 110
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.03 E-value=9.1e-10 Score=110.79 Aligned_cols=156 Identities=12% Similarity=0.015 Sum_probs=132.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc------------cHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL------------DEKLFIA 152 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~------------~~~lw~~ 152 (521)
...++++.|... ++++ ...| ....|..++..+...|+++.|...|++|+...|.... ...+|..
T Consensus 124 ~~L~~~~~A~~~~~~a~--~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 124 LHLKSFEKAKESWEMNS--EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEEEECCCCGGGCCH--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EEEeecccccchhcCCH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 356788889988 8888 7788 6899999999999999999999999999999774310 0467777
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~kr 232 (521)
++......+ +++.|...|+++|...|.+. ..|..++......|+.+.|...
T Consensus 202 la~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~~A~~~----- 252 (336)
T 1p5q_A 202 LAMCHLKLQ----------------------AFSAAIESCNKALELDSNNE--KGLSRRGEAHLAVNDFELARAD----- 252 (336)
T ss_dssp HHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH-----
T ss_pred HHHHHHHcC----------------------CHHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHCCCHHHHHHH-----
Confidence 887777777 99999999999999999876 7888888888889999888876
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHc
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI-RETYERAIAN 276 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~A-r~~~erAl~~ 276 (521)
|++++..+|.+..+|..++.++...|+.+++ +..|.+++..
T Consensus 253 ---~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 253 ---FQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp ---HHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888887 5677777654
No 111
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.01 E-value=8.8e-09 Score=90.55 Aligned_cols=114 Identities=7% Similarity=-0.022 Sum_probs=98.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|++++..+|.+...|+.++..+...|++++|...|++++...|. ...+|
T Consensus 10 ~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------~~~~~ 58 (148)
T 2vgx_A 10 IAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-------------------------------DSRFF 58 (148)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHH
T ss_pred HHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-------------------------------cHHHH
Confidence 88999999999999999999999999999998888888887774 24577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|...|++++...|.++.
T Consensus 59 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 124 (148)
T 2vgx_A 59 LGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGE---LAEAESGLFLAQELIANXPE 124 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCC---HHHHHHHHHHHHHHCcCCCc
Confidence 7788888889999999999999999887 68889999999998888 99999999999998887653
No 112
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.98 E-value=7e-09 Score=88.57 Aligned_cols=88 Identities=14% Similarity=0.110 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|+++|+..|.+. .+|..++......|+.+.+... |+++|..+|.++.+|+.++..+...|++
T Consensus 28 ~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~~~~ 97 (126)
T 4gco_A 28 DYPTAMRHYNEAVKRDPENA--ILYSNRAACLTKLMEFQRALDD--------CDTCIRLDSKFIKGYIRKAACLVAMREW 97 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCH--HHHHHHhhHHHhhccHHHHHHH--------HHHHHHhhhhhhHHHHHHHHHHHHCCCH
Confidence 88888888888888888876 7788888888888888888766 8888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCchh
Q psy8681 264 DLIRETYERAIANIPPTK 281 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~ 281 (521)
++|...|++|++..|.+.
T Consensus 98 ~~A~~~~~~al~l~P~~~ 115 (126)
T 4gco_A 98 SKAQRAYEDALQVDPSNE 115 (126)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHCcCCH
Confidence 888888888888888654
No 113
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.97 E-value=1.5e-09 Score=111.65 Aligned_cols=253 Identities=8% Similarity=0.034 Sum_probs=131.6
Q ss_pred HHHHH--HHHHhcCChhhhhhhcCC---CcH-------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCCh
Q psy8681 60 KAWKK--AMEEKQGNKIGEEGANKE---NEE-------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFV 126 (521)
Q Consensus 60 ~~W~~--~~e~~~gn~~~Ar~ife~---P~~-------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~ 126 (521)
.+|.. ..+...|++..|...|.+ |.. ....|++++|+.. +.++ ...|++.+...++..+.+.|++
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar--k~~~~~~i~~~Li~~Y~Klg~l 110 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMAR--KKARESYVETELIFALAKTNRL 110 (449)
T ss_dssp ------------------------------------------------------------------------------CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HhCccchhHHHHHHHHHHhCCH
Confidence 45554 444455555555555551 111 3334555555555 5554 4333444444455555555555
Q ss_pred hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH
Q psy8681 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE 206 (521)
Q Consensus 127 ~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~ 206 (521)
.++...|.. | +...|...+... +..|.++.|+.+|.++ .
T Consensus 111 ~e~e~f~~~-----p----n~~a~~~IGd~~----------------------~~~g~yeeA~~~Y~~a----------~ 149 (449)
T 1b89_A 111 AELEEFING-----P----NNAHIQQVGDRC----------------------YDEKMYDAAKLLYNNV----------S 149 (449)
T ss_dssp HHHTTTTTC-----C------------------------------------------CTTTHHHHHHHT----------T
T ss_pred HHHHHHHcC-----C----cHHHHHHHHHHH----------------------HHcCCHHHHHHHHHHh----------h
Confidence 544444421 1 122444444444 4444999999999976 3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHH
Q psy8681 207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAE 284 (521)
Q Consensus 207 l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~ 284 (521)
-|..++..+.+.|+.+.|.+. |+++ .++.+|...+..+...|++..|..+... +...|... .+.
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea--------~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~l~~lv~ 215 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDG--------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELIN 215 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHH--------HHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHH--------HHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhhHHHHHH
Confidence 588888888899999998877 8888 5899999999999999999999776654 33455443 567
Q ss_pred HHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh--cCChHHHHHHHHHHHh------cCCCHHHHHHHHHHHH
Q psy8681 285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG--QGERDKVRELHERLLE------RTVHVKVWMNYAQFEM 356 (521)
Q Consensus 285 le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~--~g~~~~Ar~l~eral~------~~~~~~vwi~ya~~e~ 356 (521)
++...|.++.|..+|+.++...+. +..+|..+.-++.+ .+++.+..++|...+. .|....+|..++..+.
T Consensus 216 ~Yek~G~~eEai~lLe~aL~le~a--h~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~ 293 (449)
T 1b89_A 216 YYQDRGYFEELITMLEAALGLERA--HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD 293 (449)
T ss_dssp HHHHTTCHHHHHHHHHHHTTSTTC--CHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHhCCcHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999997653 56788887766654 3566777777754433 3346788999999998
Q ss_pred HcCCchhhHHHHHHHHHH
Q psy8681 357 SSGDEDSVSLARRVFERA 374 (521)
Q Consensus 357 ~~g~~~~~~~AR~vferA 374 (521)
..+. +++|..+.-..
T Consensus 294 ~~~e---~d~A~~tm~~h 308 (449)
T 1b89_A 294 KYEE---YDNAIITMMNH 308 (449)
T ss_dssp HTTC---HHHHHHHHHHS
T ss_pred hhch---HHHHHHHHHhC
Confidence 8888 88887654433
No 114
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.97 E-value=1.4e-08 Score=98.72 Aligned_cols=195 Identities=10% Similarity=-0.067 Sum_probs=120.9
Q ss_pred HcCChhHHHHHHHHHHHhcCCccccHHHHHHH-------HHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEFFGEENLDEKLFIAF-------AKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~-------a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
..++...|+..|.+++...| ..+..|+.+ +....... ....+.-.+.+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP---~~~Daw~g~~a~g~~~~~~L~~~~----------------------r~~~a~~~~~~ 72 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE---SACDAWIGRIRCGDTDRVTLFRAW----------------------YSRRNFGQLSG 72 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHTTCCCHHHHHHHH----------------------HTGGGTTHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCh---hhhHHHHhHHHccCCcHHHHHHHH----------------------HHHHHHHHHHH
Confidence 46899999999999999955 578999998 44444444 44555566777
Q ss_pred HHhcCChhh-------------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHH
Q psy8681 195 ALDHIPKDR-------------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255 (521)
Q Consensus 195 aL~~~P~~~-------------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~ 255 (521)
++...|... ...++..|+.++...|+.+.|... |+.++...|.+. .++..+.
T Consensus 73 ~l~l~p~~l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~--------l~~~~~~~p~~~-~~~~~a~ 143 (282)
T 4f3v_A 73 SVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEA--------LEAAPVAGSEHL-VAWMKAV 143 (282)
T ss_dssp TTTCCGGGGCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHH--------HTSSCCTTCHHH-HHHHHHH
T ss_pred HhcCChhhhhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHH--------HHHHHhcCCchH-HHHHHHH
Confidence 777554421 235666677777777777666655 666666666666 6666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCch----h---HHHHHHHcCCHHHHHHHHHHHHcCC--CCCCcHHHHHHHHHHHHhcC
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPT----K---FAELESLLGDMERARAIYELAISQP--RLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~----~---~a~le~~~g~~e~Ar~ife~al~~~--~~~~~~~lw~~yi~~e~~~g 326 (521)
++.+.++++.|...|+.++...++. . .+.....+|+++.|...|++++..+ |. .....+...+..+.+.|
T Consensus 144 l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~-~~~da~~~~glaL~~lG 222 (282)
T 4f3v_A 144 VYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEA-CARAIAWYLAMARRSQG 222 (282)
T ss_dssp HHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTT-THHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHcC
Confidence 6677777777777776655532221 0 3444556666666666666665432 11 12334555555566666
Q ss_pred ChHHHHHHHHHHHhcCCCHHHHHHH
Q psy8681 327 ERDKVRELHERLLERTVHVKVWMNY 351 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~~~~~vwi~y 351 (521)
+.++|+.+|++++...|...+|..+
T Consensus 223 r~deA~~~l~~a~a~~P~~~~~~aL 247 (282)
T 4f3v_A 223 NESAAVALLEWLQTTHPEPKVAAAL 247 (282)
T ss_dssp CHHHHHHHHHHHHHHSCCHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 6666666666666666554444333
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.97 E-value=2.2e-09 Score=94.42 Aligned_cols=86 Identities=12% Similarity=-0.017 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.|... |++++..+|.++.+|+.++..+...|++
T Consensus 36 ~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~lg~~~~~~g~~ 105 (148)
T 2vgx_A 36 XYEDAHXVFQALCVLDHYDS--RFFLGLGACRQAMGQYDLAIHS--------YSYGAVMDIXEPRFPFHAAECLLQXGEL 105 (148)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred ChHHHHHHHHHHHHcCcccH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHhcCCCCchHHHHHHHHHHHcCCH
Confidence 44444444444444444443 3444444444444444444433 5555555555555555555555555555
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++++...|.
T Consensus 106 ~~A~~~~~~al~~~p~ 121 (148)
T 2vgx_A 106 AEAESGLFLAQELIAN 121 (148)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCcC
Confidence 5555555555555443
No 116
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.96 E-value=1.3e-08 Score=100.55 Aligned_cols=196 Identities=10% Similarity=-0.008 Sum_probs=104.9
Q ss_pred cccchhhHHH-HhhhccCCC--------CC----hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcc---ccHHHHHH
Q psy8681 89 DKERDREEED-ERKDEGDRD--------SD----TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEEN---LDEKLFIA 152 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~--------P~----~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~---~~~~lw~~ 152 (521)
.|++++|..+ +++. ... |+ ...+...+.++...|+++.|...|.+++...+... ....++..
T Consensus 4 ~~~~~eA~~~~~~a~--k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 81 (307)
T 2ifu_A 4 AQKISEAHEHIAKAE--KYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQ 81 (307)
T ss_dssp HHHHHHHHHHHHHHH--HHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHH--HHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4566666666 6554 221 22 34566666777777888888888888877643111 11345555
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHH
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVI 228 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i 228 (521)
++......| +++.|...|++|+...+.. .....+..++.+... |+.+.|...
T Consensus 82 lg~~~~~~g----------------------~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~- 137 (307)
T 2ifu_A 82 AGMMLKDLQ----------------------RMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL- 137 (307)
T ss_dssp HHHHHHHTT----------------------CGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH-
T ss_pred HHHHHHhCC----------------------CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH-
Confidence 555555555 7777777777777653211 112334444444444 555555444
Q ss_pred HhhHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHH
Q psy8681 229 VSKRKFQYEEEVNSNPNN------YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELA 302 (521)
Q Consensus 229 ~~krr~~ye~al~~~P~~------~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~a 302 (521)
|++++...|.. ..++..++.++...|++++|...|++++...|..
T Consensus 138 -------~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---------------------- 188 (307)
T 2ifu_A 138 -------YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM---------------------- 188 (307)
T ss_dssp -------HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------------
T ss_pred -------HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc----------------------
Confidence 55555544321 2344444444444445555544444444432211
Q ss_pred HcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC
Q psy8681 303 ISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343 (521)
Q Consensus 303 l~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~ 343 (521)
.........+...+......|+++.|+..|++++ ..|
T Consensus 189 ---~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 189 ---ENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp ---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred ---CChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 0000012345555566667788888888888888 665
No 117
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.95 E-value=9.8e-09 Score=89.15 Aligned_cols=114 Identities=9% Similarity=-0.041 Sum_probs=95.2
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVW 315 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw 315 (521)
|++++..+|.+...|+.++..+...|++++|...|++++...|. ...+|
T Consensus 7 l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-------------------------------~~~~~ 55 (142)
T 2xcb_A 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-------------------------------DARYF 55 (142)
T ss_dssp --CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------------------------CHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-------------------------------cHHHH
Confidence 88888889999999999999988888888888888888877764 24577
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|...|++++...|.++.
T Consensus 56 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~p~~~~ 121 (142)
T 2xcb_A 56 LGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD---LDGAESGFYSARALAAAQPA 121 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCcc
Confidence 7788888888999999999999998887 68888899998888888 99999999999998887653
No 118
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=98.94 E-value=3e-09 Score=109.46 Aligned_cols=261 Identities=15% Similarity=0.082 Sum_probs=96.5
Q ss_pred hcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccc
Q psy8681 88 RDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGD 166 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~ 166 (521)
+.|++++|... ++. |.+.+|..+|......|++++|...|.++- +...|...+.-....|
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika~--------D~~~y~~V~~~ae~~g----- 75 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD--------DPSSYMEVVQAANTSG----- 75 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcCC--------CHHHHHHHHHHHHhCC-----
Confidence 34556666666 554 344689999999999999999999997752 2335555555444555
Q ss_pred cchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
.++.|+..++.+++..|.. .+...++....+.|+...+++. |. .| +
T Consensus 76 -----------------~~EeAi~yl~~ark~~~~~---~i~~~Li~~Y~Klg~l~e~e~f--------~~-----~p-n 121 (449)
T 1b89_A 76 -----------------NWEELVKYLQMARKKARES---YVETELIFALAKTNRLAELEEF--------IN-----GP-N 121 (449)
T ss_dssp -----------------------------------------------------CHHHHTTT--------TT-----CC--
T ss_pred -----------------CHHHHHHHHHHHHHhCccc---hhHHHHHHHHHHhCCHHHHHHH--------Hc-----CC-c
Confidence 8888888888887754431 4555555555666776655543 21 24 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH--------
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPELVWKA-------- 317 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~-------- 317 (521)
...|...|..+...|.++.|+..|.++ +.-. ++..+.++|+++.|...|.++. ....|..
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a----~n~~~LA~~L~~Lg~yq~AVea~~KA~-------~~~~Wk~v~~aCv~~ 190 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV----SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKEVCFACVDG 190 (449)
T ss_dssp ---------------CTTTHHHHHHHT----TCHHHHHHHHHTTTCHHHHHHHHHHHT-------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh----hhHHHHHHHHHHhccHHHHHHHHHHcC-------CchhHHHHHHHHHHc
Confidence 458888888888888888888888875 2211 5666778888888888888872 1234544
Q ss_pred ----------------------HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 318 ----------------------YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 318 ----------------------yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
.+.++.+.|.+++|..+|+.+|...+ |..+|..++..+.+..- +++.+....|...
T Consensus 191 ~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p-~k~~ehl~~~~~~ 269 (449)
T 1b89_A 191 KEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QKMREHLELFWSR 269 (449)
T ss_dssp TCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HHHHHHHHHHSTT
T ss_pred CcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHH
Confidence 34556667888888888888888775 78888888888877642 4455556666655
Q ss_pred HHHhccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhC
Q psy8681 375 NQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKL 414 (521)
Q Consensus 375 l~~~~~~~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~ 414 (521)
+..-|-- ..-+...+|..+.-+=-.+|+.+.+-.+.-..
T Consensus 270 ini~k~~-~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 270 VNIPKVL-RAAEQAHLWAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp SCHHHHH-HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred hcCcHHH-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHhC
Confidence 5443300 00012357777777777889988665554333
No 119
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.94 E-value=1e-08 Score=92.20 Aligned_cols=87 Identities=14% Similarity=0.139 Sum_probs=48.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHcCCh--hhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIH-EKKYGDR--AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~-e~~~G~~--~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
+++.|...|++++...|.+. .+|..++.. ....|+. +.+... |++++..+|.+..+|..++.++...
T Consensus 59 ~~~~A~~~~~~al~~~p~~~--~~~~~la~~l~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~la~~~~~~ 128 (177)
T 2e2e_A 59 DYSNSLLAYRQALQLRGENA--ELYAALATVLYYQASQHMTAQTRAM--------IDKALALDSNEITALMLLASDAFMQ 128 (177)
T ss_dssp CHHHHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHTTTCCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhcCCcchHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 44555555555554444433 344444444 3344444 444433 5666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHHcCCch
Q psy8681 261 GNADLIRETYERAIANIPPT 280 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~ 280 (521)
|+++.|...|++++...|.+
T Consensus 129 g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 129 ANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp TCHHHHHHHHHHHHHTCCTT
T ss_pred ccHHHHHHHHHHHHhhCCCC
Confidence 66666666666666666653
No 120
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.93 E-value=5.9e-10 Score=112.17 Aligned_cols=125 Identities=10% Similarity=0.025 Sum_probs=91.7
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.++++.|...|++++...| ....+|..++......+ +++.|...|++|+...|..
T Consensus 126 L~~~~~A~~~~~~a~~~~p---~~a~~~~~~g~~~~~~g----------------------~~~~A~~~y~~Al~~~p~~ 180 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKL---EQSTIVKERGTVYFKEG----------------------KYKQALLQYKKIVSWLEYE 180 (336)
T ss_dssp EEEEECCCCGGGCCHHHHH---HHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHHTTTC
T ss_pred EeecccccchhcCCHHHHH---HHHHHHHHHHHHHHHCC----------------------CHHHHHHHHHHHHHHhhcc
Confidence 4567778888888877643 35678888888888887 9999999999999999986
Q ss_pred h-------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 203 R-------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 203 ~-------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
. ...+|..++......|+.+.|... |++++..+|.++.+|+.++..+...|++++|+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~ 252 (336)
T 1p5q_A 181 SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES--------CNKALELDSNNEKGLSRRGEAHLAVNDFELARAD 252 (336)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 2 025666666666667777766655 7777777777777777777777777777777777
Q ss_pred HHHHHHcCCch
Q psy8681 270 YERAIANIPPT 280 (521)
Q Consensus 270 ~erAl~~~P~~ 280 (521)
|++|+...|.+
T Consensus 253 ~~~al~l~P~~ 263 (336)
T 1p5q_A 253 FQKVLQLYPNN 263 (336)
T ss_dssp HHHHHHHCSSC
T ss_pred HHHHHHHCCCC
Confidence 77777666643
No 121
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.93 E-value=2e-09 Score=104.74 Aligned_cols=184 Identities=10% Similarity=-0.105 Sum_probs=146.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHH-------HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC----------
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYT-------IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN---------- 246 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~-------~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~---------- 246 (521)
++..|+..|.+++...|... ..|..++ ......+....+. ..+.+++.+.|..
T Consensus 21 d~~~A~~~F~~a~~~dP~~~--Daw~g~~a~g~~~~~~L~~~~r~~~a~--------~~~~~~l~l~p~~l~a~~~~~g~ 90 (282)
T 4f3v_A 21 SEARSLDLFTEITNYDESAC--DAWIGRIRCGDTDRVTLFRAWYSRRNF--------GQLSGSVQISMSTLNARIAIGGL 90 (282)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHTTCCCHHHHHHHHHTGGGT--------THHHHTTTCCGGGGCCEEECCTT
T ss_pred CHHHHHHHHHHHHHhChhhh--HHHHhHHHccCCcHHHHHHHHHHHHHH--------HHHHHHhcCChhhhhhhhccCCc
Confidence 88999999999999999987 8898883 3333222222222 2378888876643
Q ss_pred -----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCc
Q psy8681 247 -----------YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLDMP 311 (521)
Q Consensus 247 -----------~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~ 311 (521)
-++++.|+.++...|++++|..+|+.++...|... .+.+....|+++.|...|+.++..++....
T Consensus 91 y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~ 170 (282)
T 4f3v_A 91 YGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLA 170 (282)
T ss_dssp TCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHH
T ss_pred ccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccH
Confidence 35677799999999999999999999888778653 466788999999999999988775421111
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--C--CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT--V--HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~--~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..++...+..+...|++++|...|++++... | .+.+++..+..+...|. .++|+.+|++++...|.
T Consensus 171 ~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr---~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 171 GAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGN---ESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhcCCc
Confidence 3467777888999999999999999998654 4 45689999999999999 99999999999999996
No 122
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.93 E-value=4.5e-08 Score=86.02 Aligned_cols=131 Identities=14% Similarity=-0.038 Sum_probs=104.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|...|..+...|+++.|...|++++...| .+..+|..++......+ +++.|.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A~ 67 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTE----------------------CYGYAL 67 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 56788888888889999999999999998855 35778888888887777 889999
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL--LEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~--~~~~g~~~~Ar 267 (521)
..|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..+... +...|++++|.
T Consensus 68 ~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~ 137 (166)
T 1a17_A 68 GDATRAIELDKKYI--KGYYRRAASNMALGKFRAALRD--------YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 137 (166)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccH--HHHHHHHHHHHHhccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888765 6777888888888888888766 888888888888888554444 66667777777
Q ss_pred HHHHHHHH
Q psy8681 268 ETYERAIA 275 (521)
Q Consensus 268 ~~~erAl~ 275 (521)
..+.++..
T Consensus 138 ~~~~~~~~ 145 (166)
T 1a17_A 138 AGDEHKRS 145 (166)
T ss_dssp HHHHHHHH
T ss_pred HcccchHH
Confidence 77777554
No 123
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.92 E-value=6.1e-09 Score=101.87 Aligned_cols=191 Identities=10% Similarity=0.016 Sum_probs=140.6
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
....+...+......| +++.|...|++++...|.+. .+|..++......|+.+.|.
T Consensus 3 ~a~~~~~~g~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~~~~~~A~ 58 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR----------------------KYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQAL 58 (281)
T ss_dssp CHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCSCCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHH
Confidence 3456666776666666 99999999999999999876 78999999999999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHH
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYE 300 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife 300 (521)
.. |++++..+|.+..+|+.++..+...|++++|...|++++...|.+. .+.... ....+.....
T Consensus 59 ~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~---~~~~~~~~~~ 127 (281)
T 2c2l_A 59 AD--------CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL---RIAKKKRWNS 127 (281)
T ss_dssp HH--------HHHHTTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH---HHHHHHHHHH
T ss_pred HH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH---HHHHHHHHHH
Confidence 77 9999999999999999999999999999999999999999888653 111111 1222222222
Q ss_pred HHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 301 LAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH-VKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 301 ~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~-~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
......+.+ ..+...+..+. .|+++.|...|++++...|. ..+...+.......+ +.++.|..+|.++...
T Consensus 128 ~~~~~~~~~--~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~--~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 128 IEERRIHQE--SELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHD--KYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTCCCCC--CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHH--HHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhh--HHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHH--HHHHHHHHHHHhhhcc
Confidence 233322222 24555555443 68999999999999998874 444444555444431 2378899999988764
No 124
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.92 E-value=5.9e-07 Score=102.89 Aligned_cols=269 Identities=13% Similarity=0.057 Sum_probs=190.8
Q ss_pred HHHHhcCChhhhhhhcCC---CcH-------HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANKE---NEE-------EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVY 133 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~---P~~-------e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vy 133 (521)
.+.+..|+++.|..++++ |.. ....|++++|... .++ .++..|...+..+.+.|++++|.+.|
T Consensus 1084 VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL 1157 (1630)
T 1xi4_A 1084 VLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL 1157 (1630)
T ss_pred HHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455678888888888873 322 6667888888887 775 35778889999999999999999999
Q ss_pred HHHHHhcCCccccHHHHHHHHHHHHhhh--hhccccchhhH-HHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHH
Q psy8681 134 ERAVEFFGEENLDEKLFIAFAKFEEGQR--EKYGDRAGIED-VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKA 210 (521)
Q Consensus 134 e~Al~~~~~~~~~~~lw~~~a~~e~~~~--~~~~~~~~~~~-~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~ 210 (521)
..|....++...+..+-..|++.. +.. ..|-....... ..++..+++.|.++.|..+|..| ..|..
T Consensus 1158 ~mArk~~~e~~Idt~LafaYAKl~-rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~r 1226 (1630)
T 1xi4_A 1158 QMARKKARESYVETELIFALAKTN-RLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGR 1226 (1630)
T ss_pred HHHHhhcccccccHHHHHHHHhhc-CHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHH
Confidence 999887543222333333344331 000 01111111111 12455667778999999999996 36777
Q ss_pred HHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh--HHHHHHH
Q psy8681 211 YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--FAELESL 288 (521)
Q Consensus 211 ~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~--~a~le~~ 288 (521)
++..+.+.|+.+.|.++ |.++ .+..+|......+...|++..|+.+... +...|... .+.++..
T Consensus 1227 LA~tLvkLge~q~AIEa--------arKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1227 LASTLVHLGEYQAAVDG--------ARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHhCCHHHHHHH--------HHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHH
Confidence 88888888998888876 7776 6679999999999999999999887764 55556543 5678889
Q ss_pred cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH--hcCChHHHHHHHHHHHhcC------CCHHHHHHHHHHHHHcCC
Q psy8681 289 LGDMERARAIYELAISQPRLDMPELVWKAYIDFEV--GQGERDKVRELHERLLERT------VHVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 289 ~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~--~~g~~~~Ar~l~eral~~~------~~~~vwi~ya~~e~~~g~ 360 (521)
.|.++.|..+|+.++...+. +..+|..+..++. +.+++.++.++|..-+... ....+|..++.++.+.|+
T Consensus 1293 ~G~feEAI~LlE~aL~Lera--H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e 1370 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERA--HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 1370 (1630)
T ss_pred cCCHHHHHHHHHHHhccChh--HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999987653 4456655555444 3467788888888766643 467889999998888887
Q ss_pred chhhHHHHH
Q psy8681 361 EDSVSLARR 369 (521)
Q Consensus 361 ~~~~~~AR~ 369 (521)
+++|..
T Consensus 1371 ---~dnA~~ 1376 (1630)
T 1xi4_A 1371 ---YDNAII 1376 (1630)
T ss_pred ---HHHHHH
Confidence 888873
No 125
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.89 E-value=1.7e-08 Score=90.63 Aligned_cols=129 Identities=11% Similarity=0.068 Sum_probs=109.8
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHH-HHhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKF-EEGQRE 162 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~-e~~~~~ 162 (521)
....|+++.|... ++++ ..+| ++..|..++.++...|+++.|...|++++...| .++.+|..++.. ....+
T Consensus 20 ~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~la~~l~~~~~- 93 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKI--RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG---ENAELYAALATVLYYQAS- 93 (177)
T ss_dssp CC-----CCCCHHHHHHH--HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTT-
T ss_pred hhhccCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhcC-
Confidence 3456889999999 9999 9999 799999999999999999999999999999976 367888888888 66666
Q ss_pred hccccchhhHHHHHhhhhhhhhH--HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEH--ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~--e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al 240 (521)
++ +.|..+|++++...|.+. .+|..++......|+.+.+... |++++
T Consensus 94 ---------------------~~~~~~A~~~~~~al~~~p~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~al 142 (177)
T 2e2e_A 94 ---------------------QHMTAQTRAMIDKALALDSNEI--TALMLLASDAFMQANYAQAIEL--------WQKVM 142 (177)
T ss_dssp ---------------------TCCCHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHH
T ss_pred ---------------------CcchHHHHHHHHHHHHhCCCcH--HHHHHHHHHHHHcccHHHHHHH--------HHHHH
Confidence 77 999999999999999876 7888888888899999999877 99999
Q ss_pred hhCCCCHHHHH
Q psy8681 241 NSNPNNYDAWF 251 (521)
Q Consensus 241 ~~~P~~~~~W~ 251 (521)
..+|.+...+.
T Consensus 143 ~~~p~~~~~~~ 153 (177)
T 2e2e_A 143 DLNSPRINRTQ 153 (177)
T ss_dssp HTCCTTSCHHH
T ss_pred hhCCCCccHHH
Confidence 99999876554
No 126
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.85 E-value=2.3e-08 Score=86.78 Aligned_cols=118 Identities=12% Similarity=-0.011 Sum_probs=103.9
Q ss_pred HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHh
Q psy8681 99 ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSK 177 (521)
Q Consensus 99 eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~ 177 (521)
++++ ...| +...|..++..+...|++++|...|++++...| .++.+|..++......|
T Consensus 8 ~~al--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g---------------- 66 (142)
T 2xcb_A 8 AMLR--GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH---YDARYFLGLGACRQSLG---------------- 66 (142)
T ss_dssp -CCT--TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------
T ss_pred HHHH--cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHHh----------------
Confidence 6777 8888 688999999999999999999999999999865 47889999999988888
Q ss_pred hhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 178 ~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++..+...
T Consensus 67 ------~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 67 ------LYEQALQSYSYGALMDINEP--RFPFHAAECHLQLGDLDGAESG--------FYSARALAAAQPAHEALA 126 (142)
T ss_dssp ------CHHHHHHHHHHHHHHCTTCT--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHTCGGGHHHH
T ss_pred ------hHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCcchHHHH
Confidence 99999999999999999987 7888888888999999999877 999999999887665443
No 127
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.85 E-value=8.9e-08 Score=100.19 Aligned_cols=250 Identities=10% Similarity=0.089 Sum_probs=145.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFV---SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~---~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
..+.|+++.|..+ +++. .. .++..+..++.++...|+. ++|...|++|++. ++..+..++.+....+
T Consensus 13 ~~~~g~~~~A~~~~~~aa--~~-g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~------~~~A~~~Lg~~~~~~~ 83 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLA--EL-GYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT------SPRAQARLGRLLAAKP 83 (452)
T ss_dssp HHHHHHHHHHHHHHHHHH--HH-TCCTGGGTCC----------------------------------CHHHHHHHHHTC-
T ss_pred HHhCCCHHHHHHHHHHHH--HC-CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC------CHHHHHHHHHHHHhCC
Confidence 4567999999999 9987 43 2567788888888888877 8999999999975 3345666666332221
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhh---HHHHHH---------
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG---IEDVIV--------- 229 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~---a~~~i~--------- 229 (521)
. ...+++++|...|++++...+... +..++.+....+.... +...+.
T Consensus 84 ~-----------------~~~~~~~~A~~~~~~Aa~~g~~~A----~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~ 142 (452)
T 3e4b_A 84 G-----------------ATEAEHHEAESLLKKAFANGEGNT----LIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPE 142 (452)
T ss_dssp ------------------CCHHHHHHHHHHHHHHHHTTCSSC----HHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTT
T ss_pred C-----------------CCCcCHHHHHHHHHHHHHCCCHHH----HHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHH
Confidence 0 000277888888888887644432 2222222222221100 000000
Q ss_pred -------------------hhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCchh-----H
Q psy8681 230 -------------------SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYERAIANIPPTK-----F 282 (521)
Q Consensus 230 -------------------~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~erAl~~~P~~~-----~ 282 (521)
......+..+... ++.+++.++.++...| +.++|...|++|....|... +
T Consensus 143 a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~---~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~L 219 (452)
T 3e4b_A 143 AGLAQVLLYRTQGTYDQHLDDVERICKAALNT---TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSV 219 (452)
T ss_dssp HHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT---CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 0011223444333 4448999999999999 89999999999999877654 3
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-H--HhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHH
Q psy8681 283 AELESLL----GDMERARAIYELAISQPRLDMPELVWKAYIDF-E--VGQGERDKVRELHERLLERTVHVKVWMNYAQFE 355 (521)
Q Consensus 283 a~le~~~----g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~-e--~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e 355 (521)
+.++... ++++.|...|+++. +. ....+..++.+ + ...+++++|...|++++... ++..+..++.++
T Consensus 220 g~~y~~g~~~~~d~~~A~~~~~~aa--~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-~~~A~~~Lg~~y 293 (452)
T 3e4b_A 220 ARVLGDATLGTPDEKTAQALLEKIA--PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-QPRAELLLGKLY 293 (452)
T ss_dssp HHHHTCGGGSSCCHHHHHHHHHHHG--GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHhCCCCCCCCHHHHHHHHHHHc--CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHH
Confidence 4444333 69999999999998 32 23466666665 4 46899999999999998654 778888888877
Q ss_pred HHcC--CchhhHHHHHHHHHHH
Q psy8681 356 MSSG--DEDSVSLARRVFERAN 375 (521)
Q Consensus 356 ~~~g--~~~~~~~AR~vferAl 375 (521)
. .| ...++++|..+|++|.
T Consensus 294 ~-~G~g~~~d~~~A~~~~~~Aa 314 (452)
T 3e4b_A 294 Y-EGKWVPADAKAAEAHFEKAV 314 (452)
T ss_dssp H-HCSSSCCCHHHHHHHHHTTT
T ss_pred H-cCCCCCCCHHHHHHHHHHHh
Confidence 6 34 2234999999999998
No 128
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=5.5e-08 Score=89.66 Aligned_cols=146 Identities=8% Similarity=-0.013 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHH
Q psy8681 112 YGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVI 191 (521)
Q Consensus 112 ~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~i 191 (521)
.+...+..+...|+++.|...|++++. .++.+|..++......| +++.|...
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~lg~~~~~~g----------------------~~~~A~~~ 59 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD------PHSRICFNIGCMYTILK----------------------NMTEAEKA 59 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS------CCHHHHHHHHHHHHHTT----------------------CHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC------CChHHHHHHHHHHHHcC----------------------CHHHHHHH
Confidence 456677777788888888888888741 14667777777777777 88888888
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH----------------HHHHHHHH
Q psy8681 192 YKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY----------------DAWFDYLR 255 (521)
Q Consensus 192 y~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~----------------~~W~~y~~ 255 (521)
|++++...|... ..|..++......|+.+.|... |++++...|.+. .+|..++.
T Consensus 60 ~~~al~~~~~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 129 (213)
T 1hh8_A 60 FTRSINRDKHLA--VAYFQRGMLYYQTEKYDLAIKD--------LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAF 129 (213)
T ss_dssp HHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHH
T ss_pred HHHHHHhCccch--HHHHHHHHHHHHcccHHHHHHH--------HHHHHHhCCCccHHHHHHhccccCccchHHHHHHHH
Confidence 888888888765 6777777777788888888766 888888777665 99999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELA 302 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~a 302 (521)
.+...|+.+.|...|++++...|... .+..+.|...+.+.
T Consensus 130 ~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~~a~~~~~~~ 169 (213)
T 1hh8_A 130 MYAKKEEWKKAEEQLALATSMKSEPR-------HSKIDKAMECVWKQ 169 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCCSGG-------GGHHHHHHHHHHTT
T ss_pred HHHHccCHHHHHHHHHHHHHcCcccc-------cchHHHHHHHHHhc
Confidence 99999999999999999999999753 23444555555443
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.83 E-value=6.1e-08 Score=81.60 Aligned_cols=119 Identities=18% Similarity=0.037 Sum_probs=106.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A 69 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP---KDAKLYSNRAACYTKLL----------------------EFQLA 69 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHTTTT----------------------CHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CcHHHHHHHHHHHHHhc----------------------cHHHH
Confidence 478999999999999999999999999999865 46788888888887777 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..++.++...|+
T Consensus 70 ~~~~~~a~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 70 LKDCEECIQLEPTFI--KGYTRKAAALEAMKDYTKAMDV--------YQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCch--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 999999999999876 7888888888899999999877 999999999999999999998877653
No 130
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.83 E-value=1e-07 Score=83.64 Aligned_cols=87 Identities=11% Similarity=0.083 Sum_probs=61.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|..++.++...|++
T Consensus 28 ~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~a~~~~~~~~~ 97 (166)
T 1a17_A 28 DYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGD--------ATRAIELDKKYIKGYYRRAASNMALGKF 97 (166)
T ss_dssp CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHhccH
Confidence 77777777777777777654 5666666666667777766655 7777777777777777777777777777
Q ss_pred HHHHHHHHHHHHcCCch
Q psy8681 264 DLIRETYERAIANIPPT 280 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~ 280 (521)
++|...|++++...|.+
T Consensus 98 ~~A~~~~~~a~~~~p~~ 114 (166)
T 1a17_A 98 RAALRDYETVVKVKPHD 114 (166)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHhCCCC
Confidence 77777777777666653
No 131
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=9.1e-08 Score=79.89 Aligned_cols=120 Identities=13% Similarity=-0.008 Sum_probs=107.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A 65 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP---ANAVYFCNRAAAYSKLG----------------------NYAGA 65 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHhh----------------------chHHH
Confidence 478899999999999999999999999999865 35788888998888887 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
...|++++...|.+. .+|..++.+....|+.+.+... |++++..+|.+..+|..++.++...|+.
T Consensus 66 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 66 VQDCERAICIDPAYS--KAYGRMGLALSSLNKHVEAVAY--------YKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCccCH--HHHHHHHHHHHHhCCHHHHHHH--------HHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999876 7888888889999999999877 9999999999999999999998887754
No 132
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.82 E-value=1.9e-07 Score=77.16 Aligned_cols=121 Identities=18% Similarity=0.154 Sum_probs=104.4
Q ss_pred CCC-C-hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 106 RDS-D-TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 106 ~~P-~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
..| . ...|..++..+...|+++.|..+|++++...| .+..+|..++......+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~la~~~~~~~---------------------- 57 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQG---------------------- 57 (125)
T ss_dssp ----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------
T ss_pred CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---CcHHHHHHHHHHHHHhC----------------------
Confidence 355 3 68899999999999999999999999999865 35778888888888887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..++..++.++...|
T Consensus 58 ~~~~A~~~~~~~~~~~~~~~--~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 58 DYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAIEY--------YQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 99999999999999998876 7888888888899999998877 99999999999999999988876543
No 133
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.81 E-value=9.3e-08 Score=80.64 Aligned_cols=115 Identities=10% Similarity=-0.049 Sum_probs=101.8
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...|..+...|+++.|...|++++...| .++.+|..++......| +++.|
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~a~~~~~~~----------------------~~~~A 57 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP---EDARGYSNRAAALAKLM----------------------SFPEA 57 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHhc----------------------CHHHH
Confidence 467899999999999999999999999999965 46789999999888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC------CCCHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN------PNNYDAWFDYLRLLE 258 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~------P~~~~~W~~y~~~~~ 258 (521)
...|++++...|.+. ..|..++......|+.+.+... |++++..+ |.+..++..+.....
T Consensus 58 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 58 IADCNKAIEKDPNFV--RAYIRKATAQIAVKEYASALET--------LDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcH--HHHHHHHHHHHHHhCHHHHHHH--------HHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 999999999999886 7888888888999999999877 99999999 888888888776654
No 134
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.80 E-value=2.3e-08 Score=97.78 Aligned_cols=186 Identities=10% Similarity=-0.086 Sum_probs=134.1
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|...|..+...|+++.|...|.+++...| .+..+|..++......| +++.|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~~----------------------~~~~A 57 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQ----------------------QPEQA 57 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS---CCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhc----------------------CHHHH
Confidence 567888999999999999999999999999855 46788888888888887 89999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHcCCH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN-----YDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~-----~~~W~~y~~~~~~~g~~ 263 (521)
...|++++...|.+. .+|..++......|+.+.|... |++++..+|.+ ..+|..+..
T Consensus 58 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~~~~~~~~~-------- 119 (281)
T 2c2l_A 58 LADCRRALELDGQSV--KAHFFLGQCQLEMESYDEAIAN--------LQRAYSLAKEQRLNFGDDIPSALRI-------- 119 (281)
T ss_dssp HHHHHHHTTSCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCCCSHHHHHHHH--------
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCccchhhHHHHHHHHHHH--------
Confidence 999999999988876 7788888888888998888876 89999888765 334443321
Q ss_pred HHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc-CChHHHHHHHHH
Q psy8681 264 DLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ-GERDKVRELHER 337 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~-g~~~~Ar~l~er 337 (521)
..+...........|... ++.+ ..|++++|...|+.++...|. ...+......+.... +.++.|..+|.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 120 AKKKRWNSIEERRIHQESELHSYLTRL--IAAERERELEECQRNHEGHED--DGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHTTTSGGGTTTSC--HHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHHHHHhhhccccc--hhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 112222222223344433 2222 358888999999998886553 234444544555444 678899999998
Q ss_pred HHhc
Q psy8681 338 LLER 341 (521)
Q Consensus 338 al~~ 341 (521)
+...
T Consensus 196 a~~~ 199 (281)
T 2c2l_A 196 VDEK 199 (281)
T ss_dssp SSCT
T ss_pred hhcc
Confidence 8764
No 135
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.76 E-value=2.8e-08 Score=91.24 Aligned_cols=144 Identities=13% Similarity=0.012 Sum_probs=99.1
Q ss_pred ccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-------------HHHHHHHH
Q psy8681 90 KERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD-------------EKLFIAFA 154 (521)
Q Consensus 90 g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~-------------~~lw~~~a 154 (521)
|.++.|+.. +... ...+ .+..|...|..+...|+++.|...|.+++...|..+.. ..+|..++
T Consensus 18 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la 95 (198)
T 2fbn_A 18 YFQGAKKSIYDYTD--EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLA 95 (198)
T ss_dssp ----CCCSGGGCCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhccccCchhhCCH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 445555555 4444 3334 46789999999999999999999999999987643211 15666666
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF 234 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~ 234 (521)
......+ +++.|...|++++...|.+. .+|..++......|+.+.|...
T Consensus 96 ~~~~~~~----------------------~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~------- 144 (198)
T 2fbn_A 96 TCYNKNK----------------------DYPKAIDHASKVLKIDKNNV--KALYKLGVANMYFGFLEEAKEN------- 144 (198)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHHTCHHHHHHH-------
T ss_pred HHHHHhc----------------------CHHHHHHHHHHHHHhCcccH--HHHHHHHHHHHHcccHHHHHHH-------
Confidence 6666565 77888888888887777665 5666667777777777777665
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8681 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR 267 (521)
Q Consensus 235 ~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar 267 (521)
|++++..+|.+..+|..++.++...++..++.
T Consensus 145 -~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 145 -LYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp -HHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred -HHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777877777777777776665544443
No 136
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.76 E-value=6.6e-06 Score=81.98 Aligned_cols=205 Identities=8% Similarity=-0.040 Sum_probs=138.8
Q ss_pred HHcCChh-HHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcC
Q psy8681 121 EQNGFVS-GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHI 199 (521)
Q Consensus 121 ~~~g~~~-~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~ 199 (521)
...|.++ +|..+++.++...| .+..+|..-..+....+. ...... ....++.+..++..+|..+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP---~~ytaWn~Rr~iL~~l~~-~~~~~~-----------~~~~l~~EL~~~~~~L~~~ 104 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANP---DFATLWNCRREVLQHLET-EKSPEE-----------SAALVKAELGFLESCLRVN 104 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCT---TCHHHHHHHHHHHHHHHH-HSCHHH-----------HHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCCCHHHHHHHHHHHHHCc---hhHHHHHHHHHHHHHhcc-cccchh-----------hhHHHHHHHHHHHHHHHhC
Confidence 3456655 89999999999965 467889877666655440 000000 0013677888888888888
Q ss_pred ChhhHHHHHHHHHHHHHHcCC--hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q psy8681 200 PKDRTAEIYKAYTIHEKKYGD--RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN-ADLIRETYERAIAN 276 (521)
Q Consensus 200 P~~~~~~l~~~~~~~e~~~G~--~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~-~~~Ar~~~erAl~~ 276 (521)
|.+. .+|.--.-+....|. .+.+..+ +.+++..+|.|+.+|..-+-++...|. .+++...+.++|..
T Consensus 105 PKny--~aW~hR~wlL~~l~~~~~~~EL~~--------~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~ 174 (331)
T 3dss_A 105 PKSY--GTWHHRCWLLSRLPEPNWARELEL--------CARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR 174 (331)
T ss_dssp TTCH--HHHHHHHHHHHHCSSCCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCH--HHHHHHHHHHhccCcccHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 8876 677766666666774 4455544 888888888888888888877777776 46777777777777
Q ss_pred CCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc--------------CChHHHHHHHHHHHhcC
Q psy8681 277 IPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ--------------GERDKVRELHERLLERT 342 (521)
Q Consensus 277 ~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~--------------g~~~~Ar~l~eral~~~ 342 (521)
.|.+. ..|..-..+.... +.++.+.+.+.+++...
T Consensus 175 ~p~N~-------------------------------SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~ 223 (331)
T 3dss_A 175 NFSNY-------------------------------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD 223 (331)
T ss_dssp CSCCH-------------------------------HHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCCH-------------------------------HHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC
Confidence 66543 2333322222222 45789999999999999
Q ss_pred C-CHHHHHHHHHHHHHc-CCc-------hhhHHHHHHHHHHHHHhccc
Q psy8681 343 V-HVKVWMNYAQFEMSS-GDE-------DSVSLARRVFERANQALKAS 381 (521)
Q Consensus 343 ~-~~~vwi~ya~~e~~~-g~~-------~~~~~AR~vferAl~~~~~~ 381 (521)
| +..+|.-..-+.... |.. +.++++...+..+++..|++
T Consensus 224 P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~ 271 (331)
T 3dss_A 224 PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN 271 (331)
T ss_dssp TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence 8 688996543333332 210 34789999999999999987
No 137
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.75 E-value=3.5e-07 Score=74.78 Aligned_cols=114 Identities=12% Similarity=-0.000 Sum_probs=101.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
.+..|...+..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~----------------------~~~~A 57 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDP---HNHVLYSNRSAAYAKKG----------------------DYQKA 57 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHhhc----------------------cHHHH
Confidence 357899999999999999999999999999865 36788899998888887 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLL 257 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~ 257 (521)
...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..++.+.
T Consensus 58 ~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 58 YEDGCKTVDLKPDWG--KGYSRKAAALEFLNRFEEAKRT--------YEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHcCCCCHHHHHHHHHhh
Confidence 999999999999876 7888888888899999998877 9999999999999999888764
No 138
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.3e-07 Score=79.77 Aligned_cols=84 Identities=14% Similarity=0.067 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|+.++..+...|++
T Consensus 19 ~~~~A~~~~~~al~~~p~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~~~~ 88 (126)
T 3upv_A 19 DWPNAVKAYTEMIKRAPEDA--RGYSNRAAALAKLMSFPEAIAD--------CNKAIEKDPNFVRAYIRKATAQIAVKEY 88 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCcHHHHHHHHHHHHHHhCH
Confidence 88999999999999888876 7888888888888888888876 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcC
Q psy8681 264 DLIRETYERAIANI 277 (521)
Q Consensus 264 ~~Ar~~~erAl~~~ 277 (521)
++|...|++++...
T Consensus 89 ~~A~~~~~~al~~~ 102 (126)
T 3upv_A 89 ASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999988887
No 139
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.73 E-value=1.6e-06 Score=86.99 Aligned_cols=161 Identities=10% Similarity=-0.063 Sum_probs=90.1
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcC-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh-hhhccccc
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNG-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ-REKYGDRA 168 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~-~~~~~~~~ 168 (521)
++|..+ ++++ ..+| +..+|..-+.+....| .++++...++.++...| .+..+|..-..+.... +
T Consensus 71 e~AL~lt~~~L--~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP---Kny~aW~hR~wlL~~l~~------- 138 (349)
T 3q7a_A 71 ERALELTEIIV--RMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL---KSYQVWHHRLLLLDRISP------- 138 (349)
T ss_dssp HHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHHHHHH--HhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHhcC-------
Confidence 456666 6666 6666 5666776666666666 46667777777766644 3556666554444332 1
Q ss_pred hhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH
Q psy8681 169 GIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248 (521)
Q Consensus 169 ~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~ 248 (521)
..++++..++.++|+.+|.+. ..|.--.-+....|..+.+...+.......++++|..+|.|+.
T Consensus 139 --------------~~~~~EL~~~~k~L~~dpkNy--~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~S 202 (349)
T 3q7a_A 139 --------------QDPVSEIEYIHGSLLPDPKNY--HTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNS 202 (349)
T ss_dssp --------------SCCHHHHHHHHHHTSSCTTCH--HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred --------------CChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHH
Confidence 034566666677776666665 4554433333333322211001112223456666666777777
Q ss_pred HHHHHHHHHHHcCC-------HHHHHHHHHHHHHcCCchh
Q psy8681 249 AWFDYLRLLEDEGN-------ADLIRETYERAIANIPPTK 281 (521)
Q Consensus 249 ~W~~y~~~~~~~g~-------~~~Ar~~~erAl~~~P~~~ 281 (521)
+|...+.++...+. ++++.+.+.++|...|.+.
T Consensus 203 AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~ 242 (349)
T 3q7a_A 203 AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNV 242 (349)
T ss_dssp HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCH
Confidence 77666666655554 4555666666666666544
No 140
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.73 E-value=1.8e-07 Score=82.98 Aligned_cols=113 Identities=15% Similarity=0.053 Sum_probs=101.7
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
++..|...+..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g----------------------~~~~A 64 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP---ANPIYLSNRAAAYSASG----------------------QHEKA 64 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---cCHHHHHHHHHHHHHcc----------------------CHHHH
Confidence 578999999999999999999999999999965 46889999999988888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+...|...+..
T Consensus 65 ~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 65 AEDAELATVVDPKYS--KAWSRLGLARFDMADYKGAKEA--------YEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHSSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCchHHHHHHHHH
Confidence 999999999999986 7899999999999999999877 999999999999887665543
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.72 E-value=2.1e-06 Score=86.08 Aligned_cols=103 Identities=6% Similarity=-0.131 Sum_probs=79.1
Q ss_pred hhhhhH-HHHHH--HHHHhcCChhhhhhhcC-----CCcH----------HHhcc-cchhhHHH-HhhhccCCCC-Chhh
Q psy8681 54 KLLEKA-KAWKK--AMEEKQGNKIGEEGANK-----ENEE----------EERDK-ERDREEED-ERKDEGDRDS-DTTY 112 (521)
Q Consensus 54 ~~lP~~-~~W~~--~~e~~~gn~~~Ar~ife-----~P~~----------e~r~g-~~e~Ar~~-eral~~~~~P-~~~~ 112 (521)
...|.. .+|-. .+....+..+.|..+++ +|++ ....| .++++... +.++ ..+| +..+
T Consensus 48 ~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L--~~nPKny~a 125 (349)
T 3q7a_A 48 MYSEEYKDAMDYFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFA--VQNLKSYQV 125 (349)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH--HTTCCCHHH
T ss_pred eeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHH--HhCCCcHHH
Confidence 456666 77766 45555566677888777 7877 44566 58999999 9999 9999 8999
Q ss_pred HHHHHHHHHHc-C-ChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 113 GMRELVFEEQN-G-FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 113 W~~~a~~e~~~-g-~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
|..-+-+.... + +++++..++++++...| .+..+|..-.-+....+
T Consensus 126 W~hR~wlL~~l~~~~~~~EL~~~~k~L~~dp---kNy~AW~~R~wvl~~l~ 173 (349)
T 3q7a_A 126 WHHRLLLLDRISPQDPVSEIEYIHGSLLPDP---KNYHTWAYLHWLYSHFS 173 (349)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHTSSCT---TCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHhc
Confidence 99999998887 7 89999999999998754 46778876655554444
No 142
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.72 E-value=1.5e-07 Score=80.82 Aligned_cols=123 Identities=13% Similarity=-0.042 Sum_probs=105.0
Q ss_pred CCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 105 DRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 105 ~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
...| +...|...+..+...|+++.|...|++++...|.+.....+|..++......+
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~---------------------- 79 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLE---------------------- 79 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHc----------------------
Confidence 3445 68899999999999999999999999999986632222678888888888887
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+..+|..+..+...
T Consensus 80 ~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 80 DYDKAETEASKAIEKDGGDV--KALYRRSQALEKLGRLDQAVLD--------LQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp CHHHHHHHHHHHHHHTSCCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred cHHHHHHHHHHHHhhCccCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999875 7888888888899999999877 999999999999999888877543
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.72 E-value=8.9e-08 Score=80.91 Aligned_cols=86 Identities=9% Similarity=0.098 Sum_probs=71.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. ..|..++......|+.+.+... |++++..+|.+..+|..++..+...|+.
T Consensus 32 ~~~~A~~~~~~al~~~P~~~--~a~~~lg~~~~~~g~~~~A~~~--------~~~al~l~P~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 32 NLAEAALAFEAVCQKEPERE--EAWRSLGLTQAENEKDGLAIIA--------LNHARMLDPKDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 88899999999998888876 7888888888888888888766 8899999999999999999888888888
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++++...|.
T Consensus 102 ~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 102 NAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHhCcC
Confidence 8899999888888775
No 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.72 E-value=1e-07 Score=84.36 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=93.2
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc----c-----HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhh
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL----D-----EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKF 180 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~----~-----~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~ 180 (521)
...|...|......|++++|...|++||...|+.+. + ..+|.+.+......|
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lg------------------- 71 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLR------------------- 71 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTT-------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCC-------------------
Confidence 567899999999999999999999999999885221 1 237777777776666
Q ss_pred hhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH----HHHHHH
Q psy8681 181 QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW----FDYLRL 256 (521)
Q Consensus 181 ~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W----~~y~~~ 256 (521)
++++|...|++||+. |.+++..+|.+..+| +..+..
T Consensus 72 ---r~~eAl~~~~kAL~l-------------------------------------~n~~~e~~pd~~~A~~~~~~~rG~a 111 (159)
T 2hr2_A 72 ---SFDEALHSADKALHY-------------------------------------FNRRGELNQDEGKLWISAVYSRALA 111 (159)
T ss_dssp ---CHHHHHHHHHHHHHH-------------------------------------HHHHCCTTSTHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHh-------------------------------------hhccccCCCchHHHHHHHHHhHHHH
Confidence 888888888877753 556667799999999 999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+...|++++|...|++|+...|.+.
T Consensus 112 L~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 112 LDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 9999999999999999999988754
No 145
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.72 E-value=7.2e-07 Score=83.04 Aligned_cols=178 Identities=12% Similarity=-0.070 Sum_probs=136.7
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC----C
Q psy8681 187 RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG----N 262 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g----~ 262 (521)
+|...|+++.+. .+. ..+..++.+....|+.+.+... |++++.. .++.+++.++.++.. + +
T Consensus 4 eA~~~~~~aa~~--g~~--~a~~~lg~~~~~~~~~~~A~~~--------~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~ 68 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDR--RAQYYLADTWVSSGDYQKAEYW--------AQKAAAQ--GDGDALALLAQLKIR-NPQQAD 68 (212)
T ss_dssp CTTHHHHHHHHT--TCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHTTS-STTSCC
T ss_pred hHHHHHHHHHHC--CCH--HHHHHHHHHHhcCCCHHHHHHH--------HHHHHHc--CCHHHHHHHHHHHHc-CCCCCC
Confidence 466788888876 222 4566666666678899888877 9999874 689999999999987 6 8
Q ss_pred HHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHH
Q psy8681 263 ADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKV 331 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~A 331 (521)
.++|...|++|+....... ++.++.. .++++.|...|++++...+.+.....+..++.++.. .+++++|
T Consensus 69 ~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A 148 (212)
T 3rjv_A 69 YPQARQLAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKA 148 (212)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHH
Confidence 9999999999987543322 5566655 789999999999999875421114577777777777 7799999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc-C--CchhhHHHHHHHHHHHHHhc
Q psy8681 332 RELHERLLERTVHVKVWMNYAQFEMSS-G--DEDSVSLARRVFERANQALK 379 (521)
Q Consensus 332 r~l~eral~~~~~~~vwi~ya~~e~~~-g--~~~~~~~AR~vferAl~~~~ 379 (521)
...|++++...+++..+..++.++..- | ...++++|..+|++|+..-.
T Consensus 149 ~~~~~~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 149 SEYFKGSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999999866777888888877653 3 12359999999999998743
No 146
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.70 E-value=3e-07 Score=77.21 Aligned_cols=104 Identities=14% Similarity=0.045 Sum_probs=79.9
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a 224 (521)
.....|...+......+ +++.|..+|++++...|.+. .+|..++......|+.+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~--~~~~~la~~~~~~~~~~~A 69 (133)
T 2lni_A 14 DLALMVKNKGNECFQKG----------------------DYPQAMKHYTEAIKRNPKDA--KLYSNRAACYTKLLEFQLA 69 (133)
T ss_dssp CHHHHHHHHHHHHHHTT----------------------CSHHHHHHHHHHHTTCTTCH--HHHHHHHHHHTTTTCHHHH
T ss_pred ccHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHcCCCcH--HHHHHHHHHHHHhccHHHH
Confidence 34566667776666666 88888888888888877765 6777777777777887777
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCch
Q psy8681 225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT 280 (521)
Q Consensus 225 ~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~ 280 (521)
... |++++..+|.+..+|..++..+...|++++|...|++++...|..
T Consensus 70 ~~~--------~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~ 117 (133)
T 2lni_A 70 LKD--------CEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSC 117 (133)
T ss_dssp HHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG
T ss_pred HHH--------HHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCc
Confidence 766 888888888888888888888888888888888888888777754
No 147
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.70 E-value=1.7e-07 Score=83.14 Aligned_cols=104 Identities=15% Similarity=0.120 Sum_probs=88.9
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
....|...+......+ +++.|..+|++++...|.+. .+|..++......|+.+.+.
T Consensus 10 ~a~~~~~~g~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~g~~~~A~ 65 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARK----------------------EYSKAIDLYTQALSIAPANP--IYLSNRAAAYSASGQHEKAA 65 (164)
T ss_dssp HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHhCCcCH--HHHHHHHHHHHHccCHHHHH
Confidence 4566777777776666 89999999999999999876 78888888888889988888
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.. |++++..+|.+..+|+.++.++...|++++|...|++++...|.+.
T Consensus 66 ~~--------~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 113 (164)
T 3sz7_A 66 ED--------AELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGG 113 (164)
T ss_dssp HH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSC
T ss_pred HH--------HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCch
Confidence 76 9999999999999999999999999999999999999998888654
No 148
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.70 E-value=5.4e-08 Score=102.06 Aligned_cols=154 Identities=14% Similarity=0.042 Sum_probs=106.3
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc------------cHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL------------DEKLFI 151 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~------------~~~lw~ 151 (521)
+...++++.|... ++++ ...| ....|...+..+...|+++.|...|.+|+...|.... ...+|.
T Consensus 244 ~~~l~~~~~A~~~~~~~~--~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~ 321 (457)
T 1kt0_A 244 EVTLKSFEKAKESWEMDT--KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFL 321 (457)
T ss_dssp EEEEEEEECCCCGGGSCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHH
T ss_pred EhhhhhcccCcchhhcCH--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHH
Confidence 4466788889988 8888 7788 6889999999999999999999999999999774321 034555
Q ss_pred HHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhh
Q psy8681 152 AFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231 (521)
Q Consensus 152 ~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~k 231 (521)
.++......+ +++.|...|+++|...|.+. ..|..++......|+.+.|...
T Consensus 322 nla~~~~~~g----------------------~~~~A~~~~~~al~~~p~~~--~a~~~~g~a~~~~g~~~~A~~~---- 373 (457)
T 1kt0_A 322 NLAMCYLKLR----------------------EYTKAVECCDKALGLDSANE--KGLYRRGEAQLLMNEFESAKGD---- 373 (457)
T ss_dssp HHHHHHHHTT----------------------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH----
T ss_pred HHHHHHHHhc----------------------CHHHHHHHHHHHHhcCCccH--HHHHHHHHHHHHccCHHHHHHH----
Confidence 5555555555 77777777777777777654 5566666666666776666655
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIR-ETYERA 273 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar-~~~erA 273 (521)
|++++..+|.+..+|..++.++...++..++. ..|.++
T Consensus 374 ----~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 374 ----FEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp ----HHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776666666555443 334443
No 149
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=5.9e-07 Score=76.42 Aligned_cols=115 Identities=12% Similarity=0.012 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL 285 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~l 285 (521)
..+..++....+.|+.+.|... |+++|..+|.++.+|..++..+...|++++|...|++|+...|...
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~--------y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~---- 76 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVH--------YDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR---- 76 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----
T ss_pred HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc----
Confidence 4566677777788888888876 9999999999999999999999999999999999999888766432
Q ss_pred HHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHH
Q psy8681 286 ESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYA 352 (521)
Q Consensus 286 e~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya 352 (521)
... .....++...+.++...|+++.|...|+++|...|++.+.-.+.
T Consensus 77 ----~~~----------------~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~~~~~l~ 123 (127)
T 4gcn_A 77 ----ADY----------------KLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVK 123 (127)
T ss_dssp ----CCH----------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHHHHHHHH
T ss_pred ----hhh----------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHHHHHHHH
Confidence 000 00023455556667778888888888888888777776554443
No 150
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=1.6e-06 Score=84.67 Aligned_cols=158 Identities=6% Similarity=-0.039 Sum_probs=113.0
Q ss_pred HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----
Q psy8681 213 IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD------AWFDYLRLLEDEGNADLIRETYERAIANIPPTK----- 281 (521)
Q Consensus 213 ~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~------~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----- 281 (521)
......|+.+.+... |++++...|.... .+..++.++...|++++|...|++|+...+...
T Consensus 83 ~~~~~~~~y~~A~~~--------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNK--------VWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHTTCHHHHHHH--------HHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHhhhHHHHHHH--------HHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 333456666666655 7777776665432 233455556667788888888888887544321
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHc---CCCCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------
Q psy8681 282 ------FAELESLLGDMERARAIYELAIS---QPRLDM--PELVWKAYIDFEVGQGERDKVRELHERLLERTVH------ 344 (521)
Q Consensus 282 ------~a~le~~~g~~e~Ar~ife~al~---~~~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~------ 344 (521)
.+.++...|+++.|...|++++. ..+.+. ...++...+..+...|++++|...|++++...+.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 45667778888888888888873 222211 1257777788899999999999999999987532
Q ss_pred -HHHHHHHHHHHHHcCCchhhHHH-HHHHHHHHHHhccc
Q psy8681 345 -VKVWMNYAQFEMSSGDEDSVSLA-RRVFERANQALKAS 381 (521)
Q Consensus 345 -~~vwi~ya~~e~~~g~~~~~~~A-R~vferAl~~~~~~ 381 (521)
..++...+..+...|+ ++.| ...|++|+..+...
T Consensus 235 ~~~~~~~lg~~y~~~g~---~~~Ai~~~~~~Al~~~~~~ 270 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEY---EEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHHh
Confidence 6788999999999998 9999 88899999876544
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=2.8e-07 Score=76.82 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=58.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|+.++.++...|++
T Consensus 27 ~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T 2vyi_A 27 NFEAAVHFYGKAIELNPANA--VYFCNRAAAYSKLGNYAGAVQD--------CERAICIDPAYSKAYGRMGLALSSLNKH 96 (131)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHhhchHHHHHH--------HHHHHhcCccCHHHHHHHHHHHHHhCCH
Confidence 67777777777777666654 5666666666666666666655 6777777777777777777777767777
Q ss_pred HHHHHHHHHHHHcCCch
Q psy8681 264 DLIRETYERAIANIPPT 280 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~~ 280 (521)
+.|...|++++...|.+
T Consensus 97 ~~A~~~~~~~~~~~p~~ 113 (131)
T 2vyi_A 97 VEAVAYYKKALELDPDN 113 (131)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHhcCccc
Confidence 77777776666666543
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.67 E-value=7.7e-07 Score=73.40 Aligned_cols=112 Identities=21% Similarity=0.278 Sum_probs=72.9
Q ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHH
Q psy8681 243 NPNN-YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWK 316 (521)
Q Consensus 243 ~P~~-~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~ 316 (521)
+|.. ..+|..++..+...|+++.|...|++++...|.+. ++.+....|+++.|..+|++++...|. ...+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~ 81 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NAEAWY 81 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cHHHHH
Confidence 4554 77888999999899999999999999888777543 445555666666666666666664332 234566
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q psy8681 317 AYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEM 356 (521)
Q Consensus 317 ~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~ 356 (521)
.++..+...|+++.|..+|++++...| ++.++..++....
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 666666666666666666666666655 4555555554443
No 153
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=4.1e-07 Score=77.37 Aligned_cols=119 Identities=10% Similarity=-0.143 Sum_probs=102.0
Q ss_pred CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..| ++..|..++..+...|+++.|...|.+++...| .+..+|..++......+ +
T Consensus 4 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~---~~~~~~~~l~~~~~~~~----------------------~ 58 (137)
T 3q49_B 4 MKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP---LVAVYYTNRALCYLKMQ----------------------Q 58 (137)
T ss_dssp --CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------C
T ss_pred CccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc---CcHHHHHHHHHHHHHhc----------------------C
Confidence 345 689999999999999999999999999999965 46789999999888888 9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC-----CHHHHHHHHHHHHH
Q psy8681 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN-----NYDAWFDYLRLLED 259 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~-----~~~~W~~y~~~~~~ 259 (521)
++.|...|++++...|.+. ..|..++......|+.+.+... |++++..+|. +..++..+......
T Consensus 59 ~~~A~~~~~~al~~~p~~~--~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 59 PEQALADCRRALELDGQSV--KAHFFLGQCQLEMESYDEAIAN--------LQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhH--HHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876 7888899999999999999877 9999999887 67777666665543
No 154
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.64 E-value=3.4e-07 Score=77.89 Aligned_cols=103 Identities=12% Similarity=-0.029 Sum_probs=86.2
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhH
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a 224 (521)
.++..|...+......+ +++.|...|++++...|.+. .+|..++......|+.+.+
T Consensus 7 ~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~--~~~~~l~~~~~~~~~~~~A 62 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGR----------------------KYPEAAACYGRAITRNPLVA--VYYTNRALCYLKMQQPEQA 62 (137)
T ss_dssp CCHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHHHHHHhC----------------------cHHHHHHHHHHHHhhCcCcH--HHHHHHHHHHHHhcCHHHH
Confidence 35677777777777776 88999999999999888876 7888888888888888888
Q ss_pred HHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 225 ~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
... |++++..+|.++.+|+.++..+...|+++.|...|++++...|.
T Consensus 63 ~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 63 LAD--------CRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHH--------HHHHHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 766 88999999999999999999998889999999999988887665
No 155
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.60 E-value=5.5e-07 Score=81.84 Aligned_cols=151 Identities=13% Similarity=0.091 Sum_probs=115.1
Q ss_pred hCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc------hh-----HHHHHHHcCCHHHHHHHHHHHHcC---C
Q psy8681 242 SNP-NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP------TK-----FAELESLLGDMERARAIYELAISQ---P 306 (521)
Q Consensus 242 ~~P-~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~------~~-----~a~le~~~g~~e~Ar~ife~al~~---~ 306 (521)
.+| ....+|..++..+...|++++|...|++++..... .. .+.++...|+++.|...|++++.. .
T Consensus 20 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 99 (203)
T 3gw4_A 20 AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL 99 (203)
T ss_dssp TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence 355 56889999999999999999999999999984321 11 567788999999999999999874 2
Q ss_pred CCC--CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CC----HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 307 RLD--MPELVWKAYIDFEVGQGERDKVRELHERLLERT---VH----VKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 307 ~~~--~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~----~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
+.+ ....++...+..+...|+++.|...|++++... ++ ..++..++......|+ ++.|...|++|+..
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 100 PEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN---LLEAQQHWLRARDI 176 (203)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC---HHHHHHHHHHHHHH
Confidence 211 123456667778889999999999999999764 22 3346778888888898 99999999999998
Q ss_pred hccchhhHHHHHHHHHHH
Q psy8681 378 LKASSEKEERVMLLEAWK 395 (521)
Q Consensus 378 ~~~~~~~~~~~~l~~~~~ 395 (521)
....++......++..+.
T Consensus 177 ~~~~~~~~~~~~~~~~~~ 194 (203)
T 3gw4_A 177 FAELEDSEAVNELMTRLN 194 (203)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhccc
Confidence 876655433334444433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.59 E-value=9.3e-07 Score=72.20 Aligned_cols=86 Identities=17% Similarity=0.147 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA 263 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~ 263 (521)
+++.|..+|++++...|.+. .+|..++......|+.+.+... |++++..+|.++.+|..++..+...|++
T Consensus 19 ~~~~A~~~~~~~~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 88 (118)
T 1elw_A 19 NIDDALQCYSEAIKLDPHNH--VLYSNRSAAYAKKGDYQKAYED--------GCKTVDLKPDWGKGYSRKAAALEFLNRF 88 (118)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred cHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHhhccHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHHhhH
Confidence 66666666666666666544 4555555555555666555544 6666666666666666666666666666
Q ss_pred HHHHHHHHHHHHcCCc
Q psy8681 264 DLIRETYERAIANIPP 279 (521)
Q Consensus 264 ~~Ar~~~erAl~~~P~ 279 (521)
++|...|++++...|.
T Consensus 89 ~~A~~~~~~~~~~~~~ 104 (118)
T 1elw_A 89 EEAKRTYEEGLKHEAN 104 (118)
T ss_dssp HHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHHcCCC
Confidence 6666666666655554
No 157
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.58 E-value=2.4e-06 Score=79.43 Aligned_cols=171 Identities=10% Similarity=-0.025 Sum_probs=130.8
Q ss_pred hHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHH
Q psy8681 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAE 206 (521)
Q Consensus 127 ~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~ 206 (521)
.+|...|+++.+. .++..+..++.+....+ ++++|...|+++++.... .
T Consensus 3 ~eA~~~~~~aa~~-----g~~~a~~~lg~~~~~~~----------------------~~~~A~~~~~~a~~~g~~----~ 51 (212)
T 3rjv_A 3 TEPGSQYQQQAEA-----GDRRAQYYLADTWVSSG----------------------DYQKAEYWAQKAAAQGDG----D 51 (212)
T ss_dssp -CTTHHHHHHHHT-----TCHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHHHTTCH----H
T ss_pred chHHHHHHHHHHC-----CCHHHHHHHHHHHhcCC----------------------CHHHHHHHHHHHHHcCCH----H
Confidence 3577888898876 35778888888887777 999999999999986432 4
Q ss_pred HHHHHHHHHHHcC----ChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCC
Q psy8681 207 IYKAYTIHEKKYG----DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED----EGNADLIRETYERAIANIP 278 (521)
Q Consensus 207 l~~~~~~~e~~~G----~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~----~g~~~~Ar~~~erAl~~~P 278 (521)
.+..++.+... | +.+.+... |++++. +.++.+++.++.++.. .+++++|...|++|+...|
T Consensus 52 a~~~lg~~y~~-~g~~~~~~~A~~~--------~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 52 ALALLAQLKIR-NPQQADYPQARQL--------AEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHTTS-STTSCCHHHHHHH--------HHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHc-CCCCCCHHHHHHH--------HHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 55556655555 5 66777665 899854 6799999999999987 7899999999999999888
Q ss_pred c----hh---HHHHHHH----cCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHhc
Q psy8681 279 P----TK---FAELESL----LGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ-G-----ERDKVRELHERLLER 341 (521)
Q Consensus 279 ~----~~---~a~le~~----~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~-g-----~~~~Ar~l~eral~~ 341 (521)
. .. ++.++.. .++++.|...|++++..++. ...+..++.++... | ++++|...|++++..
T Consensus 121 ~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~---~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 121 SDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRT---GYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp SHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCT---THHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCC---HHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 3 22 5667776 78999999999999987332 12444455554432 3 899999999999986
Q ss_pred C
Q psy8681 342 T 342 (521)
Q Consensus 342 ~ 342 (521)
.
T Consensus 198 g 198 (212)
T 3rjv_A 198 G 198 (212)
T ss_dssp T
T ss_pred C
Confidence 4
No 158
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.58 E-value=4e-07 Score=76.80 Aligned_cols=103 Identities=13% Similarity=0.013 Sum_probs=71.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
...|...+..+.+.|+++.|...|++++...| .+..+|..++......| +++.|.
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P---~~~~a~~~lg~~~~~~g----------------------~~~~A~ 71 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEP---EREEAWRSLGLTQAENE----------------------KDGLAI 71 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHcC----------------------CHHHHH
Confidence 34577777777777888888888888887754 35677777777777776 777888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~ 247 (521)
..|++++...|.+. ..|..++......|+.+.+... |++++..+|.+.
T Consensus 72 ~~~~~al~l~P~~~--~~~~~la~~~~~~g~~~~A~~~--------~~~al~~~P~~~ 119 (121)
T 1hxi_A 72 IALNHARMLDPKDI--AVHAALAVSHTNEHNANAALAS--------LRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHHHHHHH--------HHHHHC------
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCcCCC
Confidence 88888888777765 5677777777777777777655 777777777654
No 159
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.58 E-value=1.9e-06 Score=72.34 Aligned_cols=118 Identities=11% Similarity=0.099 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHH
Q psy8681 111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190 (521)
Q Consensus 111 ~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~ 190 (521)
..+...+..+...|+++.|...|++++...|.++....+|..++......| +++.|..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~----------------------~~~~A~~ 60 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATR----------------------NFQLAEA 60 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTT----------------------CHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhc----------------------cHHHHHH
Confidence 346777888888899999999999999887754433467777887777777 8899999
Q ss_pred HHHHHHhcCChhhH-HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy8681 191 IYKYALDHIPKDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258 (521)
Q Consensus 191 iy~~aL~~~P~~~~-~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~ 258 (521)
.|++++...|.+.. ...+..++......|+.+.+... |++++..+|.+..++.....+..
T Consensus 61 ~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~--------~~~~~~~~p~~~~~~~a~~~l~~ 121 (129)
T 2xev_A 61 QFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQT--------LQQVATQYPGSDAARVAQERLQS 121 (129)
T ss_dssp HHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTSHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHCCCChHHHHHHHHHHH
Confidence 99999988887621 15667777777788888888876 89999989988877766655543
No 160
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.58 E-value=1.6e-07 Score=86.05 Aligned_cols=125 Identities=17% Similarity=0.019 Sum_probs=87.8
Q ss_pred CChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 124 GFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 124 g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
|+++.+...|+...... +.....|...+......+ +++.|..+|.+++...|.+.
T Consensus 18 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~----------------------~~~~A~~~~~~al~~~~~~~ 72 (198)
T 2fbn_A 18 YFQGAKKSIYDYTDEEK---VQSAFDIKEEGNEFFKKN----------------------EINEAIVKYKEALDFFIHTE 72 (198)
T ss_dssp ----CCCSGGGCCHHHH---HHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHTTTTCT
T ss_pred hhccccCchhhCCHHHH---HHHHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHHHHHhccc
Confidence 44455555554443331 123445666666666666 99999999999999877653
Q ss_pred --------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 204 --------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 204 --------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
...+|..++......|+.+.+... |++++..+|.+..+|+.++..+...|+++.|...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~ 144 (198)
T 2fbn_A 73 EWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDH--------ASKVLKIDKNNVKALYKLGVANMYFGFLEEAKEN 144 (198)
T ss_dssp TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHH
Confidence 125666777777778888877766 8888888888888888888888888888888888
Q ss_pred HHHHHHcCCchh
Q psy8681 270 YERAIANIPPTK 281 (521)
Q Consensus 270 ~erAl~~~P~~~ 281 (521)
|++++...|.+.
T Consensus 145 ~~~al~~~p~~~ 156 (198)
T 2fbn_A 145 LYKAASLNPNNL 156 (198)
T ss_dssp HHHHHHHSTTCH
T ss_pred HHHHHHHCCCcH
Confidence 888888877654
No 161
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=2.7e-07 Score=74.81 Aligned_cols=87 Identities=14% Similarity=0.083 Sum_probs=76.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDE- 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~- 260 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|. +..+|..++..+...
T Consensus 21 ~~~~A~~~~~~a~~~~~~~~--~~~~~~a~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~l~~~~~~~~ 90 (112)
T 2kck_A 21 NYTESIDLFEKAIQLDPEES--KYWLMKGKALYNLERYEEAVDC--------YNYVINVIEDEYNKDVWAAKADALRYIE 90 (112)
T ss_dssp CHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHTSCCTTCHHHHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHhCcCCH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCcccchHHHHHHHHHHHHHHh
Confidence 89999999999999988776 6788888888888988888876 9999999999 999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCch
Q psy8681 261 GNADLIRETYERAIANIPPT 280 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~ 280 (521)
|+.++|...|++++...|.+
T Consensus 91 ~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 91 GKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp SCSHHHHHHHHHHGGGCCCC
T ss_pred CCHHHHHHHHHHHhhcccCC
Confidence 99999999999999888764
No 162
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.57 E-value=2.1e-06 Score=78.86 Aligned_cols=121 Identities=10% Similarity=0.006 Sum_probs=101.4
Q ss_pred cccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhcccc
Q psy8681 89 DKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~ 167 (521)
.|+++.|... ++++ .|++.+|..++..+...|+++.|...|++++...| ....+|..++......|
T Consensus 19 ~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~lg~~~~~~~------ 85 (213)
T 1hh8_A 19 KKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK---HLAVAYFQRGMLYYQTE------ 85 (213)
T ss_dssp TTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT------
T ss_pred hCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc---cchHHHHHHHHHHHHcc------
Confidence 3445555555 5765 45788999999999999999999999999999865 46788999999988888
Q ss_pred chhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh--------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHH
Q psy8681 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR--------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRK 233 (521)
Q Consensus 168 ~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~--------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr 233 (521)
+++.|...|++++...|.+. ...+|..++......|+.+.|...
T Consensus 86 ----------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~------ 143 (213)
T 1hh8_A 86 ----------------KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ------ 143 (213)
T ss_dssp ----------------CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHH------
T ss_pred ----------------cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHH------
Confidence 99999999999999877643 336788888888899999999877
Q ss_pred HHHHHHHhhCCCC
Q psy8681 234 FQYEEEVNSNPNN 246 (521)
Q Consensus 234 ~~ye~al~~~P~~ 246 (521)
|++++..+|.+
T Consensus 144 --~~~al~~~p~~ 154 (213)
T 1hh8_A 144 --LALATSMKSEP 154 (213)
T ss_dssp --HHHHHTTCCSG
T ss_pred --HHHHHHcCccc
Confidence 99999999986
No 163
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.56 E-value=3.1e-06 Score=82.59 Aligned_cols=177 Identities=7% Similarity=-0.103 Sum_probs=122.8
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
...+...+..+...|+++.|...|.+++...+..... ...+...+.+....| +++
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 132 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKV----------------------DYE 132 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSS----------------------CHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCC----------------------CHH
Confidence 4567778888889999999999999999875431111 111222333333343 899
Q ss_pred HHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHH---hhCCCCH----HHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV---NSNPNNY----DAWFDYLR 255 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al---~~~P~~~----~~W~~y~~ 255 (521)
.|...|++++...+.. ....+|..++.+....|+.+.|... |++++ ...|.+. .++..++.
T Consensus 133 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~--------~~kal~~~~~~~~~~~~~~~~~~nlg~ 204 (293)
T 2qfc_A 133 YCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDL--------FEQILKQLEALHDNEEFDVKVRYNHAK 204 (293)
T ss_dssp HHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHH--------HHHHHHHHHhcCccccchHHHHHhHHH
Confidence 9999999999764432 1235788888888999999999877 99999 4566543 68888999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHH-HHH
Q psy8681 256 LLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV-REL 334 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~A-r~l 334 (521)
.+...|++++|...|++|+...+.. ........++...+..+...|++++| ...
T Consensus 205 ~y~~~~~y~~Al~~~~kal~~~~~~-------------------------~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~ 259 (293)
T 2qfc_A 205 ALYLDSRYEESLYQVNKAIEISCRI-------------------------NSMALIGQLYYQRGECLRKLEYEEAEIEDA 259 (293)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT-------------------------TBCSSHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhc-------------------------CcHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 9999999999999999888753210 00001234555566666677777777 666
Q ss_pred HHHHHhc
Q psy8681 335 HERLLER 341 (521)
Q Consensus 335 ~eral~~ 341 (521)
|++++..
T Consensus 260 ~~~Al~~ 266 (293)
T 2qfc_A 260 YKKASFF 266 (293)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777665
No 164
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.55 E-value=1.6e-06 Score=78.71 Aligned_cols=156 Identities=13% Similarity=0.076 Sum_probs=105.8
Q ss_pred hcccchhhHHH-HhhhccCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---ccccHHHHHHHHHHHHhhh
Q psy8681 88 RDKERDREEED-ERKDEGDRDS--DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGE---ENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~~P--~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---~~~~~~lw~~~a~~e~~~~ 161 (521)
..|+++.|..+ +.+. . .| ...+|..++.++...|+++.|...|++++..... .+....++..++......|
T Consensus 4 ~~g~~~~A~~~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 4 EAHDYALAERQAQALL--A-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp ---CHHHHHHHHHHHH--T-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHhc--C-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 45778888876 5554 4 44 4789999999999999999999999999996432 1223556667777777777
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc---CChh--hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHH
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH---IPKD--RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~---~P~~--~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~y 236 (521)
+++.|...|++++.. .|.. ....++..++......|+.+.+... |
T Consensus 81 ----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~--------~ 130 (203)
T 3gw4_A 81 ----------------------NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQE--------Y 130 (203)
T ss_dssp ----------------------CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHH--------H
T ss_pred ----------------------CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHH--------H
Confidence 999999999999987 3311 1224555666666667777777655 6
Q ss_pred HHHHhhCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 237 EEEVNSNP--NN----YDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 237 e~al~~~P--~~----~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
++++...+ .+ ..++..++.++...|++++|...|++|+..
T Consensus 131 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 131 EKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 66665422 11 223456666667777777777777776653
No 165
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.53 E-value=1.4e-07 Score=99.00 Aligned_cols=125 Identities=6% Similarity=-0.003 Sum_probs=86.4
Q ss_pred cCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
.++++.|...|+.++...| .....|...+......+ +++.|...|++|+...|..
T Consensus 247 l~~~~~A~~~~~~~~~~~~---~~a~~~~~~G~~~~~~g----------------------~~~~A~~~y~~Al~~~p~~ 301 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKL---EQAAIVKEKGTVYFKGG----------------------KYMQAVIQYGKIVSWLEME 301 (457)
T ss_dssp EEEEECCCCGGGSCHHHHH---HHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHHTTC
T ss_pred hhhcccCcchhhcCHHHHH---HHHHHHHHHHHHHHhCC----------------------CHHHHHHHHHHHHHHhccc
Confidence 3456677777777776633 35667788888877777 9999999999999998876
Q ss_pred h-------------HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8681 203 R-------------TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRET 269 (521)
Q Consensus 203 ~-------------~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~ 269 (521)
. ...+|..++....+.|+.+.|... |+++|..+|.+..+|+.++..+...|++++|+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~ 373 (457)
T 1kt0_A 302 YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVEC--------CDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 373 (457)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--------HHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 2 024566666666666666666655 7777777777777777777776666666666666
Q ss_pred HHHHHHcCCch
Q psy8681 270 YERAIANIPPT 280 (521)
Q Consensus 270 ~erAl~~~P~~ 280 (521)
|++|+...|.+
T Consensus 374 ~~~al~l~P~~ 384 (457)
T 1kt0_A 374 FEKVLEVNPQN 384 (457)
T ss_dssp HHHHHTTC---
T ss_pred HHHHHHhCCCC
Confidence 66666666643
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.53 E-value=1.1e-06 Score=77.58 Aligned_cols=117 Identities=8% Similarity=-0.092 Sum_probs=98.4
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC---------------ccccHHHHHHHHHHHHhhhhhccccchhhHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE---------------ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI 174 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~---------------~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~ 174 (521)
+..|...|..+.+.|+++.|...|.+|+..++. ++....+|..++......|
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~------------- 77 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIG------------- 77 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcC-------------
Confidence 678999999999999999999999999998321 1234567778887777777
Q ss_pred HHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-HHHHHH
Q psy8681 175 VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-DAWFDY 253 (521)
Q Consensus 175 l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-~~W~~y 253 (521)
+++.|...|+++|...|.+. ..|..++......|+.+.|... |++++..+|.+. .++..+
T Consensus 78 ---------~~~~A~~~~~~al~~~p~~~--~a~~~~g~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~~l 138 (162)
T 3rkv_A 78 ---------DLHEAEETSSEVLKREETNE--KALFRRAKARIAAWKLDEAEED--------LKLLLRNHPAAASVVAREM 138 (162)
T ss_dssp ---------CHHHHHHHHHHHHHHSTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCGGGHHHHHHHH
T ss_pred ---------cHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHhcHHHHHHH--------HHHHHhcCCCCHHHHHHHH
Confidence 99999999999999999987 7888889999999999999877 999999999998 556665
Q ss_pred HHHHH
Q psy8681 254 LRLLE 258 (521)
Q Consensus 254 ~~~~~ 258 (521)
..+..
T Consensus 139 ~~~~~ 143 (162)
T 3rkv_A 139 KIVTE 143 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 167
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=1.8e-06 Score=73.87 Aligned_cols=107 Identities=15% Similarity=0.067 Sum_probs=90.0
Q ss_pred ccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh-HHHHHHHHHHHHHHcCChhh
Q psy8681 145 LDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR-TAEIYKAYTIHEKKYGDRAG 223 (521)
Q Consensus 145 ~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~-~~~l~~~~~~~e~~~G~~~~ 223 (521)
.....|...+......+ +++.|..+|++++...|.+. ...+|..++......|+.+.
T Consensus 26 ~~~~~~~~~a~~~~~~~----------------------~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 83 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCG----------------------DYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDK 83 (148)
T ss_dssp CCHHHHHHHHHHHHTTT----------------------CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhC----------------------CHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHH
Confidence 34667777777777776 99999999999999988751 12678888888888999988
Q ss_pred HHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 224 a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+... |++++..+|.+..+|+.++..+...|+.++|...|++++...|.+.
T Consensus 84 A~~~--------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 84 AETE--------ASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHH--------HHHHHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHH--------HHHHHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 8876 9999999999999999999999999999999999999999888653
No 168
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.52 E-value=2.1e-06 Score=83.75 Aligned_cols=159 Identities=5% Similarity=-0.122 Sum_probs=122.1
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-Chh-----hHH-HHHHHHHHcCChhHHHHHHHHHHHhcCCcccc---HHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTT-----YGM-RELVFEEQNGFVSGARKVYERAVEFFGEENLD---EKLFIAFA 154 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~-----~W~-~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~---~~lw~~~a 154 (521)
....|+++.|..+ ++++ ...| .+. .|. .++.++...|+++.|...|++|+...+..... ..++..++
T Consensus 85 ~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg 162 (293)
T 3u3w_A 85 LCKQKRYKEIYNKVWNEL--KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIA 162 (293)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHh--ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 4567888899999 8998 7666 332 244 36777777889999999999999964432221 34677777
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc---CCh--hhHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH---IPK--DRTAEIYKAYTIHEKKYGDRAGIEDVIV 229 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~---~P~--~~~~~l~~~~~~~e~~~G~~~~a~~~i~ 229 (521)
.+....| +++.|...|+++++. .|. .....++..++.+....|+.+.|...
T Consensus 163 ~~y~~~g----------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~-- 218 (293)
T 3u3w_A 163 NIYAENG----------------------YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ-- 218 (293)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHH--
T ss_pred HHHHHcC----------------------CHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHH--
Confidence 7777777 999999999999963 211 12235788888889999999999877
Q ss_pred hhHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHc
Q psy8681 230 SKRKFQYEEEVNSNPNN------YDAWFDYLRLLEDEGN-ADLIRETYERAIAN 276 (521)
Q Consensus 230 ~krr~~ye~al~~~P~~------~~~W~~y~~~~~~~g~-~~~Ar~~~erAl~~ 276 (521)
|++++...+.. ..+|..++..+...|+ .++|...|++|+..
T Consensus 219 ------~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 219 ------VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp ------HHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89998875433 7899999999999995 69999999999874
No 169
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.51 E-value=1.5e-06 Score=72.43 Aligned_cols=116 Identities=12% Similarity=-0.009 Sum_probs=98.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
+..|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~la~~~~~~~----------------------~~~~A~ 58 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP---TNMTYITNQAAVYFEKG----------------------DYNKCR 58 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC---ccHHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 57899999999999999999999999999865 36788888888888887 999999
Q ss_pred HHHHHHHhcCChhh-----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 190 VIYKYALDHIPKDR-----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 190 ~iy~~aL~~~P~~~-----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
..|++++...|... ...+|..++......|+.+.+... |++++..+| +...+..+..+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~--------~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 59 ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHF--------YNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHH--------HHHHHHhCC-CHHHHHHHHHHHHH
Confidence 99999999877541 026788888888899999999877 999999999 68888887776544
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.51 E-value=9.8e-07 Score=71.45 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=92.8
Q ss_pred CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhH
Q psy8681 107 DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEH 185 (521)
Q Consensus 107 ~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (521)
.| +...|..++..+...|+++.|...|++++...| .+..+|..++......+ ++
T Consensus 2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~a~~~~~~~----------------------~~ 56 (112)
T 2kck_A 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP---EESKYWLMKGKALYNLE----------------------RY 56 (112)
T ss_dssp CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHTT----------------------CH
T ss_pred CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc---CCHHHHHHHHHHHHHcc----------------------CH
Confidence 46 678899999999999999999999999999865 36778888998888887 99
Q ss_pred HHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHc-CChhhHHHHHHhhHHHHHHHHHhhCCCC
Q psy8681 186 ERARVIYKYALDHIPK--DRTAEIYKAYTIHEKKY-GDRAGIEDVIVSKRKFQYEEEVNSNPNN 246 (521)
Q Consensus 186 e~Ar~iy~~aL~~~P~--~~~~~l~~~~~~~e~~~-G~~~~a~~~i~~krr~~ye~al~~~P~~ 246 (521)
+.|...|++++...|. .. .+|..++...... |+.+.+... |++++..+|.+
T Consensus 57 ~~A~~~~~~a~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~A~~~--------~~~~~~~~p~~ 110 (112)
T 2kck_A 57 EEAVDCYNYVINVIEDEYNK--DVWAAKADALRYIEGKEVEAEIA--------EARAKLEHHHH 110 (112)
T ss_dssp HHHHHHHHHHHHTSCCTTCH--HHHHHHHHHHTTCSSCSHHHHHH--------HHHHGGGCCCC
T ss_pred HHHHHHHHHHHHhCcccchH--HHHHHHHHHHHHHhCCHHHHHHH--------HHHHhhcccCC
Confidence 9999999999999998 65 7888899999999 999998877 99999998875
No 171
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.50 E-value=5.8e-06 Score=80.66 Aligned_cols=159 Identities=7% Similarity=-0.017 Sum_probs=123.0
Q ss_pred HHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH-----HH-HHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----
Q psy8681 213 IHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA-----WF-DYLRLLEDEGNADLIRETYERAIANIPPTK----- 281 (521)
Q Consensus 213 ~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~-----W~-~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~----- 281 (521)
......|+.+.+... |++++...|.+++. |. .++.++...|+++.|...|++|+...+...
T Consensus 83 ~~~~~~~~y~~a~~~--------~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 83 IMLCKQKRYKEIYNK--------VWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHTTCHHHHHHH--------HHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHhhHHHHHHH--------HHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 344467888888876 99999988876652 33 356666677899999999999999644321
Q ss_pred ------HHHHHHHcCCHHHHHHHHHHHHc----CCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-------
Q psy8681 282 ------FAELESLLGDMERARAIYELAIS----QPRL-DMPELVWKAYIDFEVGQGERDKVRELHERLLERTV------- 343 (521)
Q Consensus 282 ------~a~le~~~g~~e~Ar~ife~al~----~~~~-~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~------- 343 (521)
.+.++..+|+++.|...|++++. .+.. .....++..++.++...|++++|...|++++...+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~ 234 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHH
Confidence 56678899999999999999995 1111 11245777888889999999999999999998752
Q ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 344 HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 344 ~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
-..+|...+..+...|+ .+++|...|++|+..+...
T Consensus 235 ~~~~~~~lg~~~~~~g~--~~~~A~~~~~~Al~i~~~~ 270 (293)
T 3u3w_A 235 IGQLYYQRGECLRKLEY--EEAEIEDAYKKASFFFDIL 270 (293)
T ss_dssp HHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHHHh
Confidence 16789999999999984 1699999999999877643
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.49 E-value=2.2e-07 Score=93.31 Aligned_cols=148 Identities=13% Similarity=0.092 Sum_probs=84.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
....|...+..+...|+++.|...|.+|+...|.. . .+ ...+ .+..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~---~-~~-------~~~~----------------------~~~~~ 224 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD---F-MF-------QLYG----------------------KYQDM 224 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH---H-HH-------TCCH----------------------HHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc---h-hh-------hhcc----------------------cHHHH
Confidence 36779999999999999999999999999986531 1 11 1111 33333
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~ 268 (521)
...+ . . .+|..++......|+.+.|... |+++|..+|.+..+|+.++..+...|++++|+.
T Consensus 225 ~~~l----~-----~--~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~ 285 (338)
T 2if4_A 225 ALAV----K-----N--PCHLNIAACLIKLKRYDEAIGH--------CNIVLTEEEKNPKALFRRGKAKAELGQMDSARD 285 (338)
T ss_dssp HHHH----H-----T--HHHHHHHHHHHTTTCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHH----H-----H--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 2211 1 1 4666677777778888887766 888888888888888888888888888888888
Q ss_pred HHHHHHHcCCchh-----HHHH-HHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 269 TYERAIANIPPTK-----FAEL-ESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 269 ~~erAl~~~P~~~-----~a~l-e~~~g~~e~Ar~ife~al~~~~~ 308 (521)
.|++|+...|.+. ++.+ ....+..+.++.+|.+++...|.
T Consensus 286 ~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 286 DFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HHHHTTC---------------------------------------
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 8888888877655 3333 33456777788888888775543
No 173
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.48 E-value=3.7e-07 Score=80.63 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=79.1
Q ss_pred HhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCCh----------hHHHHHHHHHHHhcCCccccHHHHHHHH
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFV----------SGARKVYERAVEFFGEENLDEKLFIAFA 154 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~----------~~Ar~vye~Al~~~~~~~~~~~lw~~~a 154 (521)
.+.+.++.|+.. ++++ ...| ++..|..|+..+...+++ ++|+..|++||.+.| ....+|..++
T Consensus 13 ~r~~~feeA~~~~~~Ai--~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP---~~~~A~~~LG 87 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTY--KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP---KKDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc---CcHHHHHHHH
Confidence 456788999999 9999 9999 799999999999988764 599999999999965 4788999998
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
......+...+.. ....+++++|...|++||+..|.+.
T Consensus 88 ~ay~~lg~l~P~~-----------~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 88 NAYTSFAFLTPDE-----------TEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHHHCCCH-----------HHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhcccCcch-----------hhhhccHHHHHHHHHHHHHhCCCCH
Confidence 8887664100000 0011378999999999999998763
No 174
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.47 E-value=1.5e-06 Score=76.68 Aligned_cols=88 Identities=19% Similarity=0.175 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHHHhc------------------CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC
Q psy8681 184 EHERARVIYKYALDH------------------IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~------------------~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~ 245 (521)
+++.|...|.+++.. .|.. ..+|..++......|+.+.+... |+++|..+|.
T Consensus 26 ~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~nla~~~~~~~~~~~A~~~--------~~~al~~~p~ 95 (162)
T 3rkv_A 26 DYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN--IPLYANMSQCYLNIGDLHEAEET--------SSEVLKREET 95 (162)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH--HHHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH--HHHHHHHHHHHHhcCcHHHHHHH--------HHHHHhcCCc
Confidence 999999999999998 2222 25777777777788888888766 8888888888
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
++.+|+.++..+...|++++|...|++|+...|.+.
T Consensus 96 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 96 NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 888888888888888888888888888888888653
No 175
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.46 E-value=6.3e-08 Score=102.17 Aligned_cols=127 Identities=14% Similarity=-0.036 Sum_probs=98.0
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
...|..++..+...|++++|...|++|++..| .+..+|..++......+ ++++|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p---~~~~~~~~lg~~~~~~g----------------------~~~~A~ 60 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNP---SNAIYYGNRSLAYLRTE----------------------CYGYAL 60 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---ccHHHHHHHHHHHHHhc----------------------CHHHHH
Confidence 34455556666677888889999999888854 45778888888887777 888888
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH--HHHcCCHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL--LEDEGNADLIR 267 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~--~~~~g~~~~Ar 267 (521)
..|++|++..|.+. ..|..++......|+.+.|... |++++..+|.+..+|..++.. +...|++++|.
T Consensus 61 ~~~~~al~l~p~~~--~~~~~lg~~~~~~g~~~eA~~~--------~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~ 130 (477)
T 1wao_1 61 GDATRAIELDKKYI--KGYYRRAASNMALGKFRAALRD--------YETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI 130 (477)
T ss_dssp HHHHHHHHSCTTCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHHhCCCCH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888776 6777788888888888888766 888888888888888888877 77778888888
Q ss_pred HHHH
Q psy8681 268 ETYE 271 (521)
Q Consensus 268 ~~~e 271 (521)
..|+
T Consensus 131 ~~~~ 134 (477)
T 1wao_1 131 AGDE 134 (477)
T ss_dssp ----
T ss_pred cccc
Confidence 8888
No 176
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.46 E-value=1.6e-06 Score=72.15 Aligned_cols=108 Identities=14% Similarity=0.031 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCC-Cc----HHHH
Q psy8681 246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLD-MP----ELVW 315 (521)
Q Consensus 246 ~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~-~~----~~lw 315 (521)
....|..++..+...|+++.|...|++++...|.+. ++.++...|+++.|...|++++...|.. .. ..+|
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 356677777777777888888888888777766543 3344444555555555555555421110 00 2344
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHH
Q psy8681 316 KAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353 (521)
Q Consensus 316 ~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~ 353 (521)
..++..+...|+++.|...|++++...|++.++..++.
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~ 120 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 44444445555555555555555555444444444433
No 177
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=1.6e-06 Score=73.61 Aligned_cols=87 Identities=15% Similarity=0.171 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCH-------HHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY-------DAWFDYLR 255 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~-------~~W~~y~~ 255 (521)
|+++.|...|++||+..|.+. .+|...+......|+.+.|... |+++|..+|.+. .+|..++.
T Consensus 22 ~~~~~A~~~y~~Al~~~p~~~--~~~~nlg~~~~~~~~~~~A~~~--------~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIELDPSNI--TFYNNKAAVYFEEKKFAECVQF--------CEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp TCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCH--HHHHhHHHHHHHhhhHHHHHHH--------HHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 399999999999999999987 7898899999999999999877 999999988653 46777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 256 LLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 256 ~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.+...|+++.|...|++++...|+
T Consensus 92 ~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHcCCHHHHHHHHHHHHhhCcC
Confidence 788888888888888888887665
No 178
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.45 E-value=4.5e-06 Score=89.78 Aligned_cols=165 Identities=12% Similarity=-0.006 Sum_probs=131.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCC----------hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD----------RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDY 253 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~----------~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y 253 (521)
..++|...|..+|...|... .+|..-.......|. .+.+. ..|++++..+|+++.+|..-
T Consensus 44 ~~eeal~~~~~~l~~nP~~~--taW~~R~~~l~~l~~~~~~~~~~~~~~~eL--------~~~~~~l~~~pK~y~aW~hR 113 (567)
T 1dce_A 44 LDESVLELTSQILGANPDFA--TLWNCRREVLQHLETEKSPEESAALVKAEL--------GFLESCLRVNPKSYGTWHHR 113 (567)
T ss_dssp CSHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH--------HHHHHHHHHCTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCchhH--HHHHHHHHHHHhcccccchhhhhhhHHHHH--------HHHHHHHHhCCCCHHHHHHH
Confidence 34688999999999999987 788776666666665 34444 44999999999999999999
Q ss_pred HHHHHHcC--CHHHHHHHHHHHHHcCCchh-----HHHHHHHcC-CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhc
Q psy8681 254 LRLLEDEG--NADLIRETYERAIANIPPTK-----FAELESLLG-DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQ 325 (521)
Q Consensus 254 ~~~~~~~g--~~~~Ar~~~erAl~~~P~~~-----~a~le~~~g-~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~ 325 (521)
+.++...+ +++++...+++++...|.+. -+.+...+| .++.+...+.++|...|.+ ...|..-..+....
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n--~saW~~r~~ll~~l 191 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--YSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--HHHHHHHHHHHHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--ccHHHHHHHHHHhh
Confidence 99999999 67999999999999999876 133445678 8999999999999977654 56787766655543
Q ss_pred --------------CChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCC
Q psy8681 326 --------------GERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGD 360 (521)
Q Consensus 326 --------------g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~ 360 (521)
+.++++.+.+.+++...| +..+|..+.-+....+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 192 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp SCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCC
T ss_pred cccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCC
Confidence 557999999999999987 68899887776665544
No 179
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.42 E-value=4.5e-07 Score=75.61 Aligned_cols=89 Identities=19% Similarity=0.134 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDH---IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~---~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
|++++|...|+++++. .|... .+|..++......|+.+.+... |++++..+|.++.+|..++..+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~--~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~~~l~~~~~~ 73 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLA--ECYLGLGSTFRTLGEYRKAEAV--------LANGVKQFPNHQALRVFYAMVLYN 73 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHH--HHHHHHHHHHHHcCCHHHHHHH--------HHHHHHhCCCchHHHHHHHHHHHH
Confidence 3788899999999988 46554 7888888888899999988877 999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh
Q psy8681 260 EGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
.|++++|...|++++...|.+.
T Consensus 74 ~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 74 LGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HTCHHHHHHHHHHHHHHHCCCH
T ss_pred cCCHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999998887654
No 180
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.39 E-value=3.2e-06 Score=70.86 Aligned_cols=102 Identities=7% Similarity=-0.090 Sum_probs=83.2
Q ss_pred HhcccchhhHHH-HhhhccCCCC-Ch---hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhh
Q psy8681 87 ERDKERDREEED-ERKDEGDRDS-DT---TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQR 161 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P-~~---~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~ 161 (521)
...|+++.|... ++++ ..+| +. ..|..++..+...|+++.|...|++++...|+.+..+.++..++......|
T Consensus 13 ~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g 90 (129)
T 2xev_A 13 LKNGKYDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEG 90 (129)
T ss_dssp HHTTCHHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcC
Confidence 346777777777 8999 8888 55 699999999999999999999999999997754333778888888888888
Q ss_pred hhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHH
Q psy8681 162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIH 214 (521)
Q Consensus 162 ~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~ 214 (521)
+++.|...|+.++...|.+. ........+
T Consensus 91 ----------------------~~~~A~~~~~~~~~~~p~~~--~~~~a~~~l 119 (129)
T 2xev_A 91 ----------------------KNTEAQQTLQQVATQYPGSD--AARVAQERL 119 (129)
T ss_dssp ----------------------CHHHHHHHHHHHHHHSTTSH--HHHHHHHHH
T ss_pred ----------------------CHHHHHHHHHHHHHHCCCCh--HHHHHHHHH
Confidence 99999999999999999876 344443333
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.39 E-value=3.5e-06 Score=85.67 Aligned_cols=125 Identities=7% Similarity=-0.073 Sum_probs=80.5
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCC-------------ccccHHHHHHHHHHHHhhhhhccccchhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGE-------------ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS 176 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~-------------~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~ 176 (521)
...|...+..+...|+++.|...|++|+...+. .+....+|..++......+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g--------------- 287 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS--------------- 287 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc---------------
Confidence 456899999999999999999999999985331 1123445555555555554
Q ss_pred hhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy8681 177 KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRL 256 (521)
Q Consensus 177 ~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~ 256 (521)
+++.|...|+++|+..|.+. .+|..++......|+.+.|... |++++..+|.+..+|..++.+
T Consensus 288 -------~~~~A~~~~~~al~~~p~~~--~a~~~lg~~~~~~g~~~eA~~~--------l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 288 -------DWQGAVDSCLEALEIDPSNT--KALYRRAQGWQGLKEYDQALAD--------LKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp -------CHHHHHHHHHHHHTTCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHHHH
T ss_pred -------CHHHHHHHHHHHHHhCchhH--HHHHHHHHHHHHccCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHH
Confidence 66666666666666666554 5555555555566666666544 666666666666666666666
Q ss_pred HHHcCCHHHH
Q psy8681 257 LEDEGNADLI 266 (521)
Q Consensus 257 ~~~~g~~~~A 266 (521)
+...++..++
T Consensus 351 ~~~~~~~~~a 360 (370)
T 1ihg_A 351 KQKIKAQKDK 360 (370)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555444433
No 182
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.39 E-value=4.1e-06 Score=72.15 Aligned_cols=132 Identities=14% Similarity=0.032 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCCC-C-C--Cc
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQPR-L-D--MP 311 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~~-~-~--~~ 311 (521)
..++..++..+...|++++|...|++++...|... ++.++...|+++.|...|++++...+ . + ..
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 45788899999999999999999999998765432 56778889999999999999987321 1 1 11
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---C----CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT---V----HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~----~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
..++..++..+...|+++.|...|++++... + ...++..++..+...|+ ++.|...|++++......
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGN---HDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC---HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccC---HHHHHHHHHHHHHHHHHh
Confidence 3566677778889999999999999999864 1 14567778888888898 999999999999887653
No 183
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.38 E-value=1e-05 Score=79.58 Aligned_cols=176 Identities=8% Similarity=0.014 Sum_probs=135.7
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHH
Q psy8681 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP--NNYDAWFDYLRLLEDEGNADL 265 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P--~~~~~W~~y~~~~~~~g~~~~ 265 (521)
|...|++.+...+.+. ..+...+......|+.+.|..+ +.+.|..+| .+..+....+.++...|+++.
T Consensus 85 a~~~l~~l~~~~~~~~--~~~~~la~i~~~~g~~eeAL~~--------l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~ 154 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP--YELYLLATAQAILGDLDKSLET--------CVEGIDNDEAEGTTELLLLAIEVALLNNNVST 154 (310)
T ss_dssp CCHHHHHTTTTSCCCH--HHHHHHHHHHHHHTCHHHHHHH--------HHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhcCCCCc--HHHHHHHHHHHHcCCHHHHHHH--------HHHHhccCCCcCcHHHHHHHHHHHHHCCCHHH
Confidence 5667777776543333 2334666777778999999877 999999887 889999999999999999999
Q ss_pred HHHHHHHHHHcCCc-----hh--------HHHHHHHcCCHHHHHHHHHHHHcCCCC-CCcHHHHHHHHHHHHhcCChHHH
Q psy8681 266 IRETYERAIANIPP-----TK--------FAELESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERDKV 331 (521)
Q Consensus 266 Ar~~~erAl~~~P~-----~~--------~a~le~~~g~~e~Ar~ife~al~~~~~-~~~~~lw~~yi~~e~~~g~~~~A 331 (521)
|++.++++.+..|+ +. |..+....+.+..|..+|+.+...+|. .....+|. .....|++++|
T Consensus 155 A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln----~~~~~g~~~eA 230 (310)
T 3mv2_B 155 ASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN----LHLQQRNIAEA 230 (310)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH----HHHHHTCHHHH
T ss_pred HHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH----HHHHcCCHHHH
Confidence 99999999998882 22 223333344999999999999887652 11234555 56689999999
Q ss_pred HHHHHHHHhcC----------C-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 332 RELHERLLERT----------V-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 332 r~l~eral~~~----------~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
..+++.+++.. | ++.+.++.+.+....|+ .|...+.++....|+++
T Consensus 231 e~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk-----~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 231 QGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL-----DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC-----TTHHHHHHHHHTTCCCH
T ss_pred HHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh-----HHHHHHHHHHHhCCCCh
Confidence 99999877752 4 67777788888888774 67899999999999985
No 184
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.36 E-value=3.3e-06 Score=90.87 Aligned_cols=154 Identities=10% Similarity=-0.040 Sum_probs=127.7
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCC----------hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhh
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGF----------VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQ 160 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~----------~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~ 160 (521)
++|... ++++ ..+| +..+|..-+.+....|. ++++...|++++...| .+..+|..-+-.....
T Consensus 46 eeal~~~~~~l--~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p---K~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 46 ESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP---KSYGTWHHRCWLLSRL 120 (567)
T ss_dssp HHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHH--HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHc
Confidence 467888 9999 9999 78999999999998887 8999999999999865 4788998877666555
Q ss_pred hhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC-ChhhHHHHHHhhHHHHHHHH
Q psy8681 161 REKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG-DRAGIEDVIVSKRKFQYEEE 239 (521)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G-~~~~a~~~i~~krr~~ye~a 239 (521)
+ . ..++++...|.++++.+|.+. ..|.--..+....| ..+.+.+. +.++
T Consensus 121 ~----~----------------~~~~~el~~~~k~l~~d~~N~--~aW~~R~~~l~~l~~~~~~el~~--------~~~~ 170 (567)
T 1dce_A 121 P----E----------------PNWARELELCARFLEADERNF--HCWDYRRFVAAQAAVAPAEELAF--------TDSL 170 (567)
T ss_dssp S----S----------------CCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTCCCHHHHHHH--------HHTT
T ss_pred c----c----------------ccHHHHHHHHHHHHhhccccc--cHHHHHHHHHHHcCCChHHHHHH--------HHHH
Confidence 4 0 045899999999999999987 77777666667778 66666655 8999
Q ss_pred HhhCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHcCCchh
Q psy8681 240 VNSNPNNYDAWFDYLRLLEDE--------------GNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 240 l~~~P~~~~~W~~y~~~~~~~--------------g~~~~Ar~~~erAl~~~P~~~ 281 (521)
|..+|.++.+|...+.++... +.++++.+.+.+|+...|.+.
T Consensus 171 I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~ 226 (567)
T 1dce_A 171 ITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQ 226 (567)
T ss_dssp TTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCS
T ss_pred HHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCc
Confidence 999999999999999988774 346888999999999999866
No 185
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.36 E-value=1.4e-06 Score=72.48 Aligned_cols=89 Identities=11% Similarity=-0.056 Sum_probs=76.7
Q ss_pred hcccchhhHHH-HhhhccCC---CC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhh
Q psy8681 88 RDKERDREEED-ERKDEGDR---DS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~~~~---~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~ 162 (521)
..|+++.|+.. ++++ .. .| ++..|..++.++...|++++|...|++++...| .++.++..++......|
T Consensus 2 ~~g~~~~A~~~~~~al--~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~l~~~~~~~g- 75 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAI--ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP---NHQALRVFYAMVLYNLG- 75 (117)
T ss_dssp -----CCCHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT-
T ss_pred CCCcHHHHHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchHHHHHHHHHHHHcC-
Confidence 35889999999 9999 88 47 689999999999999999999999999999976 46788999999888888
Q ss_pred hccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhh
Q psy8681 163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDR 203 (521)
Q Consensus 163 ~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~ 203 (521)
+++.|...|++++...|.+.
T Consensus 76 ---------------------~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 76 ---------------------RYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp ---------------------CHHHHHHHHHHHHHHHCCCH
T ss_pred ---------------------CHHHHHHHHHHHHHhCCCcH
Confidence 99999999999999988775
No 186
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.36 E-value=1.4e-06 Score=76.95 Aligned_cols=95 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHH--HhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVI--VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i--~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
.++.|+..|+++++..|.+. ..|..++......|........+ ...+...|+++|.++|++.++|+.++..+.+.|
T Consensus 17 ~feeA~~~~~~Ai~l~P~~a--ea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg 94 (158)
T 1zu2_A 17 LFEQIRQDAENTYKSNPLDA--DNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA 94 (158)
T ss_dssp HHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhc
Confidence 88999999999999999987 78888877777666543111110 123345599999999999999999999998775
Q ss_pred -----------CHHHHHHHHHHHHHcCCch
Q psy8681 262 -----------NADLIRETYERAIANIPPT 280 (521)
Q Consensus 262 -----------~~~~Ar~~~erAl~~~P~~ 280 (521)
++++|...|++|+...|.+
T Consensus 95 ~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~ 124 (158)
T 1zu2_A 95 FLTPDETEAKHNFDLATQFFQQAVDEQPDN 124 (158)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred ccCcchhhhhccHHHHHHHHHHHHHhCCCC
Confidence 6777888888888877764
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.35 E-value=5.5e-05 Score=74.33 Aligned_cols=146 Identities=10% Similarity=0.024 Sum_probs=103.7
Q ss_pred hHHH-HhhhccCCC-CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhH
Q psy8681 95 EEED-ERKDEGDRD-SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIED 172 (521)
Q Consensus 95 Ar~~-eral~~~~~-P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~ 172 (521)
|+.. ++.+ ... ++...+..++..+...|++++|..++.+++...| ...+..+....+.+....|
T Consensus 85 a~~~l~~l~--~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~-~~~~lea~~l~vqi~L~~~----------- 150 (310)
T 3mv2_B 85 NIEELENLL--KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE-AEGTTELLLLAIEVALLNN----------- 150 (310)
T ss_dssp CCHHHHHTT--TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSC-STTHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHH--hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCC-CcCcHHHHHHHHHHHHHCC-----------
Confidence 6666 7777 654 4666778999999999999999999999987643 1245677788888888888
Q ss_pred HHHHhhhhhhhhHHHHHHHHHHHHhcCCh------hhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCC-
Q psy8681 173 VIVSKRKFQYEEHERARVIYKYALDHIPK------DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN- 245 (521)
Q Consensus 173 ~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~------~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~- 245 (521)
+.+.|+.+++.+.+..|. .....+..+++.+...-+....+..+ |+++....|.
T Consensus 151 -----------r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~--------f~El~~~~p~~ 211 (310)
T 3mv2_B 151 -----------NVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYY--------YEELSQTFPTW 211 (310)
T ss_dssp -----------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHH--------HHHHHTTSCSH
T ss_pred -----------CHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHH--------HHHHHHhCCCc
Confidence 999999999999988882 22223334455555443466667655 8888777776
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 246 -NYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 246 -~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
+..+.+. .++..|++++|..+++.+++.
T Consensus 212 ~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 212 KTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp HHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred ccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 2222222 666777777777777765554
No 188
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.35 E-value=1e-06 Score=88.49 Aligned_cols=133 Identities=16% Similarity=0.170 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCC
Q psy8681 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN 262 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~ 262 (521)
++++.|...|++|+...|.+. .+.. .|....+.. .+ ...+|+.++.++...|+
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~---~~~~-------~~~~~~~~~------------~l-----~~~~~~nla~~~~~~g~ 245 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDF---MFQL-------YGKYQDMAL------------AV-----KNPCHLNIAACLIKLKR 245 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHH---HHTC-------CHHHHHHHH------------HH-----HTHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHHHHHHhccch---hhhh-------cccHHHHHH------------HH-----HHHHHHHHHHHHHHcCC
Confidence 499999999999999998753 1111 111111111 11 12489999999999999
Q ss_pred HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH-HHhcCChHHHHHHHH
Q psy8681 263 ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF-EVGQGERDKVRELHE 336 (521)
Q Consensus 263 ~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~-e~~~g~~~~Ar~l~e 336 (521)
+++|...|++|+...|.+. ++..+..+|+++.|+..|++++...|.+ ..++..+..+ ....+..+.++.+|.
T Consensus 246 ~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~--~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 246 YDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD--KAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999765 5777889999999999999999976543 3466666555 445678899999999
Q ss_pred HHHhcCCC
Q psy8681 337 RLLERTVH 344 (521)
Q Consensus 337 ral~~~~~ 344 (521)
+++...|.
T Consensus 324 ~~l~~~p~ 331 (338)
T 2if4_A 324 GIFKGKDE 331 (338)
T ss_dssp --------
T ss_pred HhhCCCCC
Confidence 99988763
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.34 E-value=2.4e-06 Score=89.93 Aligned_cols=111 Identities=16% Similarity=0.118 Sum_probs=95.2
Q ss_pred hhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 180 ~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
+..+++++|...|++|++..|.+. .+|..++......|+.+.|... |++++..+|.+..+|..++..+..
T Consensus 17 ~~~g~~~~A~~~~~~Al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 17 FKAKDYENAIKFYSQAIELNPSNA--IYYGNRSLAYLRTECYGYALGD--------ATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHhCCccH--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCCHHHHHHHHHHHHH
Confidence 445699999999999999999886 8899999999999999999877 999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCchh-----HHHH--HHHcCCHHHHHHHHH
Q psy8681 260 EGNADLIRETYERAIANIPPTK-----FAEL--ESLLGDMERARAIYE 300 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~-----~a~l--e~~~g~~e~Ar~ife 300 (521)
.|++++|...|++|++..|.+. ++.+ ....|++++|..+++
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999998765 3344 566799999999999
No 190
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.32 E-value=7.4e-06 Score=70.52 Aligned_cols=137 Identities=13% Similarity=-0.085 Sum_probs=91.3
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc---cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL---DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHE 186 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~---~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e 186 (521)
..+|..++..+...|+++.|...|.+++...+.... ...++..++......| +++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~ 66 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG----------------------EFE 66 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT----------------------CHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcC----------------------CHH
Confidence 567899999999999999999999999987542111 1245666666666666 999
Q ss_pred HHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCC------CCHHHHHHHHHH
Q psy8681 187 RARVIYKYALDHIPKDR----TAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP------NNYDAWFDYLRL 256 (521)
Q Consensus 187 ~Ar~iy~~aL~~~P~~~----~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P------~~~~~W~~y~~~ 256 (521)
.|...|++++...+... ...++..++......|+.+.+... |++++...+ ....++..++..
T Consensus 67 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~--------~~~a~~~~~~~~~~~~~~~~~~~la~~ 138 (164)
T 3ro3_A 67 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY--------HLKHLAIAQELKDRIGEGRACWSLGNA 138 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHH--------HHHHHHHHHHccchHhHHHHHHHHHHH
Confidence 99999999988744321 123455555666666766666655 666655422 113455556666
Q ss_pred HHHcCCHHHHHHHHHHHHHc
Q psy8681 257 LEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~ 276 (521)
+...|+.++|...|++++..
T Consensus 139 ~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHH
Confidence 66666666666666666554
No 191
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1e-05 Score=82.87 Aligned_cols=200 Identities=8% Similarity=-0.050 Sum_probs=141.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--------------cHHHHHHHHHHHHhhhhhccccchhhHHHHHhh
Q psy8681 113 GMRELVFEEQNGFVSGARKVYERAVEFFGEENL--------------DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178 (521)
Q Consensus 113 W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--------------~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~ 178 (521)
-+.-+.-....|++++|...|..++...+.... ....+..++......|
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~----------------- 69 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMG----------------- 69 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-----------------
Confidence 344556667789999999999999987553211 0123455566666665
Q ss_pred hhhhhhHHHHHHHHHHHHhcCChh---hH-HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC------CCCHH
Q psy8681 179 KFQYEEHERARVIYKYALDHIPKD---RT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN------PNNYD 248 (521)
Q Consensus 179 ~~~~~~~e~Ar~iy~~aL~~~P~~---~~-~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~------P~~~~ 248 (521)
+++.|...|..++...+.. .. ..+...+..+....|+.+.+..+ |+.++... +.-..
T Consensus 70 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 70 -----AKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFV--------CEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp -----CHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHH--------HHHHHHHHHHSSCCSSHHH
T ss_pred -----CHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHH--------HHHHHHHHHHhCccHHHHH
Confidence 9999999999998764432 11 12344444555556777777665 77776643 23367
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcCC---CC--CCcH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQP---RL--DMPE 312 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~~---~~--~~~~ 312 (521)
++..++.++...|++.+|..+++.++....... .+.++..+|++++|+.+|.+++... +. ....
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 899999999999999999999999987643221 4677889999999999999998621 11 1124
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcC
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERT 342 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~ 342 (521)
.++...+.+....|++..|...|..++...
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~ 246 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFESY 246 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 566677777888999999999999998753
No 192
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.27 E-value=1.3e-05 Score=66.00 Aligned_cols=85 Identities=14% Similarity=0.047 Sum_probs=74.8
Q ss_pred HHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHH
Q psy8681 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFE 372 (521)
Q Consensus 294 ~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vfe 372 (521)
.|...|++++...|. ...+|..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|+..|+
T Consensus 3 ~a~~~~~~al~~~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~---~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTD--NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD---RAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC---HHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC---HHHHHHHHH
Confidence 467788888887664 367899999999999999999999999999987 68899999999999998 999999999
Q ss_pred HHHHHhccchh
Q psy8681 373 RANQALKASSE 383 (521)
Q Consensus 373 rAl~~~~~~~~ 383 (521)
+++...|..++
T Consensus 78 ~al~~~~~~~~ 88 (115)
T 2kat_A 78 SGLAAAQSRGD 88 (115)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHhcccccc
Confidence 99999887554
No 193
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.26 E-value=8.9e-06 Score=82.64 Aligned_cols=88 Identities=17% Similarity=0.110 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhcCChh--------------hHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHH
Q psy8681 184 EHERARVIYKYALDHIPKD--------------RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDA 249 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~--------------~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~ 249 (521)
+++.|...|++|+...|.. ....+|..++......|+.+.|... |+++|..+|.++.+
T Consensus 238 ~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~--------~~~al~~~p~~~~a 309 (370)
T 1ihg_A 238 NWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDS--------CLEALEIDPSNTKA 309 (370)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHTTCTTCHHH
T ss_pred CHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH--------HHHHHHhCchhHHH
Confidence 9999999999999853321 0114555555555555555555544 66666666666666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 250 WFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 250 W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
|+.++..+...|++++|...|++|+...|.
T Consensus 310 ~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~ 339 (370)
T 1ihg_A 310 LYRRAQGWQGLKEYDQALADLKKAQEIAPE 339 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 666666666666666666666666555554
No 194
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.23 E-value=8.4e-06 Score=83.51 Aligned_cols=186 Identities=11% Similarity=0.051 Sum_probs=134.1
Q ss_pred HhcccchhhHHH-HhhhccCCCCC-h-----------------hhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCcccc-
Q psy8681 87 ERDKERDREEED-ERKDEGDRDSD-T-----------------TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLD- 146 (521)
Q Consensus 87 ~r~g~~e~Ar~~-eral~~~~~P~-~-----------------~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~- 146 (521)
...|++++|... .+++ ...|+ . .....++.++...|++++|...|.+++...+.....
T Consensus 15 ~~~~~y~eA~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 15 VNEKQYNEAEQVYLSLL--DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHTCHHHHHHHHHHHH--HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHCCCHHHHHHHHHHHH--hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 346777778777 7877 66552 1 247889999999999999999999999876532111
Q ss_pred --HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHcCC
Q psy8681 147 --EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD----RTAEIYKAYTIHEKKYGD 220 (521)
Q Consensus 147 --~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~----~~~~l~~~~~~~e~~~G~ 220 (521)
..+...++.+.... +.++.|..+|+.++...+.. ....++..++.+....|+
T Consensus 93 ~~~~~~~~l~~~~~~~----------------------~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 150 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVP----------------------DSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ 150 (434)
T ss_dssp HHHHHHHHHHHHCSCC----------------------SCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhCC----------------------CCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC
Confidence 11222222222223 37889999999988763322 123688888999999999
Q ss_pred hhhHHHHHHhhHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----chh-------H
Q psy8681 221 RAGIEDVIVSKRKFQYEEEVNS------NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP-----PTK-------F 282 (521)
Q Consensus 221 ~~~a~~~i~~krr~~ye~al~~------~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P-----~~~-------~ 282 (521)
...|... +++++.. .|....++...+.++...|++++|+.+|++++...+ ... .
T Consensus 151 ~~~A~~~--------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 222 (434)
T 4b4t_Q 151 YKDSLAL--------INDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMS 222 (434)
T ss_dssp HHHHHHH--------HHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHH--------HHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Confidence 9998876 7776654 233467899999999999999999999999987532 221 3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHc
Q psy8681 283 AELESLLGDMERARAIYELAIS 304 (521)
Q Consensus 283 a~le~~~g~~e~Ar~ife~al~ 304 (521)
+.++...|++..|...|..++.
T Consensus 223 g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 223 GILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHH
Confidence 4555677999999999999876
No 195
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.22 E-value=0.00011 Score=77.75 Aligned_cols=161 Identities=13% Similarity=0.078 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-PNNYDAWFDYLRLLEDEG---------NADLIRETYERAIA 275 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P~~~~~W~~y~~~~~~~g---------~~~~Ar~~~erAl~ 275 (521)
.++...++...+.|+.+.|..+ |+++.... +-+..+|..++..+...+ .++.|..+|+++..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~l--------f~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~ 98 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRL--------YDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV 98 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHH--------HHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHH--------HHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH
Confidence 3455566666778888888766 77777653 346777777777776543 36778888888876
Q ss_pred c--CCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHH
Q psy8681 276 N--IPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKV 347 (521)
Q Consensus 276 ~--~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~v 347 (521)
. .|+.. ++..+.+.|+++.|..+|+.+.... ..++...|...|..+.+.|+++.|..+|+.+.... |+...
T Consensus 99 ~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~t 177 (501)
T 4g26_A 99 DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFG-IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPE 177 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHH
Confidence 4 34433 4556677888999999888887642 12346788888888889999999999999888764 78888
Q ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHHh
Q psy8681 348 WMNYAQFEMSSGDEDSVSLARRVFERANQAL 378 (521)
Q Consensus 348 wi~ya~~e~~~g~~~~~~~AR~vferAl~~~ 378 (521)
|..++..+...|+ +++|..+|++.-...
T Consensus 178 y~~Li~~~~~~g~---~d~A~~ll~~Mr~~g 205 (501)
T 4g26_A 178 LAALLKVSMDTKN---ADKVYKTLQRLRDLV 205 (501)
T ss_dssp HHHHHHHHHHTTC---HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhCCC---HHHHHHHHHHHHHhC
Confidence 8888888888888 899999998887653
No 196
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=98.21 E-value=0.00014 Score=76.85 Aligned_cols=120 Identities=13% Similarity=0.103 Sum_probs=96.8
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 236 YEEEVNSN-PNNYDAWFDYLRLLEDEGNADLIRETYERAIAN--IPPTK----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 236 ye~al~~~-P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~--~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
|++..... +-|..+|..++..+.+.|++++|..+|+++... .|+.. +...+...|+.+.|..+|+...... .
T Consensus 93 f~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G-~ 171 (501)
T 4g26_A 93 FKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE-V 171 (501)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC-C
Confidence 77766653 347889999999999999999999999999875 34433 4455678999999999999998853 2
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhc--CCCHHHHHHHHHHHH
Q psy8681 309 DMPELVWKAYIDFEVGQGERDKVRELHERLLER--TVHVKVWMNYAQFEM 356 (521)
Q Consensus 309 ~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~--~~~~~vwi~ya~~e~ 356 (521)
.++...|..+|..+.+.|+.++|..+|+++-.. .|+...|..+.....
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~ 221 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK 221 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence 335789999999999999999999999999875 478777776665544
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.19 E-value=1e-05 Score=66.76 Aligned_cols=83 Identities=13% Similarity=0.036 Sum_probs=74.6
Q ss_pred hhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchh
Q psy8681 93 DREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGI 170 (521)
Q Consensus 93 e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~ 170 (521)
+.|... ++++ ...| ++..|..++..+...|+++.|...|++++...| .....|..++......|
T Consensus 2 ~~a~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~la~~~~~~g--------- 67 (115)
T 2kat_A 2 QAITERLEAML--AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP---TYSVAWKWLGKTLQGQG--------- 67 (115)
T ss_dssp CCHHHHHHHHH--TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHHT---------
T ss_pred hHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHcC---------
Confidence 467778 8999 9999 799999999999999999999999999999965 46788999999988888
Q ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHhcCChh
Q psy8681 171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202 (521)
Q Consensus 171 ~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~ 202 (521)
+++.|+..|++++...|..
T Consensus 68 -------------~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 68 -------------DRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp -------------CHHHHHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHHHHHHhcccc
Confidence 9999999999999987754
No 198
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.19 E-value=2.1e-05 Score=69.50 Aligned_cols=113 Identities=12% Similarity=0.043 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
...|+..+..+...|++++|...|++|+...|...-+ .++...| ....+|...+..+...|
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~-----------------~a~~~~~--~~a~a~~n~g~al~~Lg 71 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE-----------------EAFDHAG--FDAFCHAGLAEALAGLR 71 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT-----------------SCCCHHH--HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch-----------------hhhhhcc--chHHHHHHHHHHHHHCC
Confidence 4567888888888888888888888888887752100 0000000 01348888888899999
Q ss_pred ChHHHHHHHHHHHhc-------CC-CHHHH----HHHHHHHHHcCCchhhHHHHHHHHHHHHHhccc
Q psy8681 327 ERDKVRELHERLLER-------TV-HVKVW----MNYAQFEMSSGDEDSVSLARRVFERANQALKAS 381 (521)
Q Consensus 327 ~~~~Ar~l~eral~~-------~~-~~~vw----i~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~ 381 (521)
++++|...|+++|.. .| ++..| ...+..+...|. +++|...|++|++..|..
T Consensus 72 r~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr---~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 72 SFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGR---GAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCC---HHHHHHHHHHHHhcCCCc
Confidence 999999999999999 87 58899 999999999999 999999999999999876
No 199
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.15 E-value=6.3e-05 Score=72.57 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=78.7
Q ss_pred HHHHhc-CChhhHHHHHHHHHHHHH---HcCChhhHHHHHHhhHHHHHHHHHhhCCC--CHHHHHHHHHHHHHc-----C
Q psy8681 193 KYALDH-IPKDRTAEIYKAYTIHEK---KYGDRAGIEDVIVSKRKFQYEEEVNSNPN--NYDAWFDYLRLLEDE-----G 261 (521)
Q Consensus 193 ~~aL~~-~P~~~~~~l~~~~~~~e~---~~G~~~~a~~~i~~krr~~ye~al~~~P~--~~~~W~~y~~~~~~~-----g 261 (521)
..+|.. .|.+...-+|.+.+..-. ..|+...+.. +...+..++++++++|+ +..+|..++.++... |
T Consensus 141 ~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~--l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gG 218 (301)
T 3u64_A 141 HKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDT--VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGG 218 (301)
T ss_dssp HHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHH--HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTC
T ss_pred HHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHh--HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCC
Confidence 344444 455555567777654432 1243332221 23446679999999999 667999999999884 8
Q ss_pred CHHHHHHHHHHHHHcCCch-h-----HHHHHHH-cCCHHHHHHHHHHHHcCCCC
Q psy8681 262 NADLIRETYERAIANIPPT-K-----FAELESL-LGDMERARAIYELAISQPRL 308 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~-~-----~a~le~~-~g~~e~Ar~ife~al~~~~~ 308 (521)
+.+.|+..|++|+.+.|+. . |+.+... .|+.+.|+..+++++..++.
T Consensus 219 d~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 219 GMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp CHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred CHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 9999999999999999864 2 6666655 47888888888888876554
No 200
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.99 E-value=0.0002 Score=69.14 Aligned_cols=88 Identities=18% Similarity=0.158 Sum_probs=79.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHH-----cCChhhHHHHHHhhHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKK-----YGDRAGIEDVIVSKRKFQYEEEVNSNPNN-YDAWFDYLRLL 257 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~-----~G~~~~a~~~i~~krr~~ye~al~~~P~~-~~~W~~y~~~~ 257 (521)
....|+..+++|++.+|.......|..++.++.+ .|+.+.++.. |+++|.++|+. .+.+..|+.++
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~--------ferAL~LnP~~~id~~v~YA~~l 249 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTA--------FEHLTRYCSAHDPDHHITYADAL 249 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHH--------HHHHHHHCCTTCSHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHH--------HHHHHHhCCCCCchHHHHHHHHH
Confidence 6789999999999999996655799999999888 5999988876 99999999974 99999999999
Q ss_pred HHc-CCHHHHHHHHHHHHHcCCc
Q psy8681 258 EDE-GNADLIRETYERAIANIPP 279 (521)
Q Consensus 258 ~~~-g~~~~Ar~~~erAl~~~P~ 279 (521)
... |+.+.+...+++|+...|.
T Consensus 250 ~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 250 CIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp TTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHhcCCHHHHHHHHHHHHcCCCC
Confidence 885 9999999999999998765
No 201
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.97 E-value=3e-05 Score=62.57 Aligned_cols=73 Identities=15% Similarity=0.048 Sum_probs=63.0
Q ss_pred CCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 106 RDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 106 ~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
..| ++.+|..+|..+...|+++.|...|++++...| .+..+|..++......| +
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~~~a~~~lg~~~~~~g----------------------~ 56 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDP---DYVGTYYHLGKLYERLD----------------------R 56 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST---TCTHHHHHHHHHHHHTT----------------------C
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHHHHHHHHHHcC----------------------C
Confidence 357 789999999999999999999999999999965 46779999999998888 9
Q ss_pred HHHHHHHHHHHHhcCChhh
Q psy8681 185 HERARVIYKYALDHIPKDR 203 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~ 203 (521)
++.|...|++++...|...
T Consensus 57 ~~~A~~~~~~al~l~~~~~ 75 (100)
T 3ma5_A 57 TDDAIDTYAQGIEVAREEG 75 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhhcCC
Confidence 9999999999998866543
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.93 E-value=0.0001 Score=57.19 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=72.6
Q ss_pred cHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHH
Q psy8681 146 DEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIE 225 (521)
Q Consensus 146 ~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~ 225 (521)
...+|..++......+ +++.|...|++++...|.+. .+|..++......|+.+.+.
T Consensus 8 ~~~~~~~la~~~~~~~----------------------~~~~A~~~~~~a~~~~~~~~--~~~~~l~~~~~~~~~~~~A~ 63 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQG----------------------DYDEAIEYYQKALELDPNNA--EAWYNLGNAYYKQGDYDEAI 63 (91)
T ss_dssp HHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHcc----------------------CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHHhhHHHHH
Confidence 3567777777777776 99999999999999999876 78888898899999999998
Q ss_pred HHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Q psy8681 226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 226 ~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g 261 (521)
.. |++++..+|.+..+|..++..+...|
T Consensus 64 ~~--------~~~a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 64 EY--------YQKALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HH--------HHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HH--------HHHHHhcCCCCHHHHHHHHHHHHhcC
Confidence 77 99999999999999999998876554
No 203
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.86 E-value=0.00015 Score=56.22 Aligned_cols=81 Identities=15% Similarity=0.069 Sum_probs=69.4
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHH
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~A 188 (521)
+...|..++..+...|+++.|...|++++...| .+..+|..++......+ +++.|
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~l~~~~~~~~----------------------~~~~A 62 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP---NNAEAWYNLGNAYYKQG----------------------DYDEA 62 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHh----------------------hHHHH
Confidence 478899999999999999999999999999865 46788999999888888 99999
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHHHH
Q psy8681 189 RVIYKYALDHIPKDRTAEIYKAYTIHEK 216 (521)
Q Consensus 189 r~iy~~aL~~~P~~~~~~l~~~~~~~e~ 216 (521)
...|++++...|.+. ..+..++....
T Consensus 63 ~~~~~~a~~~~p~~~--~~~~~l~~~~~ 88 (91)
T 1na3_A 63 IEYYQKALELDPNNA--EAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHCTTCH--HHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCH--HHHHHHHHHHH
Confidence 999999999999876 56666655543
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.1e-05 Score=65.38 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN------YDAWFDYLRLL 257 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~------~~~W~~y~~~~ 257 (521)
+++.|...|++++...|.+. .+|..++......|+.+.+... |++++..+|.+ ..+++.++..+
T Consensus 19 ~~~~A~~~~~~al~~~p~~~--~~~~~lg~~~~~~g~~~~A~~~--------~~~al~~~p~~~~~~~~~~~~~~~~~~~ 88 (111)
T 2l6j_A 19 LYREAVHCYDQLITAQPQNP--VGYSNKAMALIKLGEYTQAIQM--------CQQGLRYTSTAEHVAIRSKLQYRLELAQ 88 (111)
T ss_dssp CHHHHHHHHHHHHHHCTTCH--HHHHHHHHHHHHTTCHHHHHHH--------HHHHHTSCSSTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCH--HHHHHHHHHHHHhcCHHHHHHH--------HHHHHHhCCCccHHHHHHHHHHHHHHHH
Confidence 56666666666666655544 4555555555555655555544 56666666655 55555555555
Q ss_pred HHcCCHHHH
Q psy8681 258 EDEGNADLI 266 (521)
Q Consensus 258 ~~~g~~~~A 266 (521)
...|..+.|
T Consensus 89 ~~~~~~~~a 97 (111)
T 2l6j_A 89 GAVGSVQIP 97 (111)
T ss_dssp HHHHCCCCC
T ss_pred HHHHhHhhh
Confidence 544444333
No 205
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=0.0001 Score=59.48 Aligned_cols=90 Identities=10% Similarity=-0.020 Sum_probs=71.9
Q ss_pred CChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHH
Q psy8681 108 SDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187 (521)
Q Consensus 108 P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~ 187 (521)
+++..|..++..+...|++++|...|++++...| .++.+|..++......| +++.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~lg~~~~~~g----------------------~~~~ 56 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP---QNPVGYSNKAMALIKLG----------------------EYTQ 56 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT---TCHHHHHHHHHHHHHTT----------------------CHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHhc----------------------CHHH
Confidence 3467899999999999999999999999999965 46789999999988888 9999
Q ss_pred HHHHHHHHHhcCChhhH----HHHHHHHHHHHHHcCChh
Q psy8681 188 ARVIYKYALDHIPKDRT----AEIYKAYTIHEKKYGDRA 222 (521)
Q Consensus 188 Ar~iy~~aL~~~P~~~~----~~l~~~~~~~e~~~G~~~ 222 (521)
|...|++++...|.+.. ..++..++......|...
T Consensus 57 A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (111)
T 2l6j_A 57 AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQ 95 (111)
T ss_dssp HHHHHHHHHTSCSSTTSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHhHh
Confidence 99999999999998610 144555555555555443
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.78 E-value=0.00022 Score=57.36 Aligned_cols=70 Identities=10% Similarity=0.103 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 311 PELVWKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 311 ~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
...+|..++..+...|+++.|...|++++...| ++.+|..++..+...|+ ++.|...|++|+...|..++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~---~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR---TDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhhhcCCc
Confidence 357899999999999999999999999999987 68899999999999998 99999999999998876544
No 207
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.77 E-value=0.0013 Score=59.62 Aligned_cols=137 Identities=15% Similarity=0.221 Sum_probs=96.8
Q ss_pred HHHHHHHHHhh---CCCC-HHHHHHHHHHHHHc---CCH---HHHH-HHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHH
Q psy8681 232 RKFQYEEEVNS---NPNN-YDAWFDYLRLLEDE---GNA---DLIR-ETYERAIANIPPTKFAELESLLGDMERARAIYE 300 (521)
Q Consensus 232 rr~~ye~al~~---~P~~-~~~W~~y~~~~~~~---g~~---~~Ar-~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife 300 (521)
.|..||..|.. .-.| .+.|..|+.+...+ |.. .... .++++++..+-++.
T Consensus 11 ~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~------------------- 71 (202)
T 3esl_A 11 TKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDME------------------- 71 (202)
T ss_dssp HHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCG-------------------
T ss_pred HHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccc-------------------
Confidence 35568888876 3344 48999999998765 221 1233 56777666432211
Q ss_pred HHHcCCCCC-CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Q psy8681 301 LAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQ 376 (521)
Q Consensus 301 ~al~~~~~~-~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~ 376 (521)
. -..| -...+|..|+++. ..++...++.+|.-+.... .....|..||.++...|+ +.+|..||+.|+.
T Consensus 72 ---r-YkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~A~~Vy~~GI~ 143 (202)
T 3esl_A 72 ---T-YRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQF---FLEAKVLLELGAE 143 (202)
T ss_dssp ---G-GTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHH
T ss_pred ---c-ccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Confidence 0 0001 0257899998765 3455789999999998864 478999999999999999 9999999999999
Q ss_pred HhccchhhHHHHHHHHHHHHHHHH
Q psy8681 377 ALKASSEKEERVMLLEAWKEFEAQ 400 (521)
Q Consensus 377 ~~~~~~~~~~~~~l~~~~~~fE~~ 400 (521)
....+- ..|..++..|+.+
T Consensus 144 ~~A~P~-----~rL~~~~~~F~~R 162 (202)
T 3esl_A 144 NNCRPY-----NRLLRSLSNYEDR 162 (202)
T ss_dssp TTCBSH-----HHHHHHHHHHHHH
T ss_pred cCCccH-----HHHHHHHHHHHHH
Confidence 865442 3688888888865
No 208
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.70 E-value=0.00029 Score=74.07 Aligned_cols=149 Identities=11% Similarity=0.002 Sum_probs=96.1
Q ss_pred HHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHH
Q psy8681 120 EEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKY 194 (521)
Q Consensus 120 e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~ 194 (521)
+...|++++|..+|+++|.. +|. ++.....+.+++.....+| ++++|..+|++
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g----------------------~~~eA~~~~~~ 376 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQ----------------------AYEEASHYARR 376 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhc----------------------CHHHHHHHHHH
Confidence 34679999999999999986 332 3334667777888888887 99999999999
Q ss_pred HHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 195 ALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 195 aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
+|.. .++.+|. .+|.-...+.+++.++...|++++|..+|++|+
T Consensus 377 aL~i---------------~~~~lG~---------------------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 377 MVDG---------------YMKLYHH---------------------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHH---------------HHHHSCT---------------------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH---------------HHHHcCC---------------------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9864 1123331 133344567888999999999999999999987
Q ss_pred HcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC-CCHHHHH
Q psy8681 275 ANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWM 349 (521)
Q Consensus 275 ~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~-~~~~vwi 349 (521)
.+ ++..+..... ....+.......+...+.+..|..+|.++.+.. .+-.+|+
T Consensus 421 ~i----------------------~~~~lG~~Hp-~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~~~~ 473 (490)
T 3n71_A 421 AI----------------------LLVTHGPSHP-ITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQPMQV 473 (490)
T ss_dssp HH----------------------HHHHTCTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HH----------------------HHHHhCCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence 63 3333321100 012233334444556677788888888776644 4455553
No 209
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.66 E-value=0.0011 Score=66.28 Aligned_cols=143 Identities=10% Similarity=0.056 Sum_probs=100.3
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHH--HcC---CHHHHHHHHHHHHHcCCchh--HHHH------HHHcC-----CHHHHHH
Q psy8681 236 YEEEVNSNPNNYDAWFDYLRLLE--DEG---NADLIRETYERAIANIPPTK--FAEL------ESLLG-----DMERARA 297 (521)
Q Consensus 236 ye~al~~~P~~~~~W~~y~~~~~--~~g---~~~~Ar~~~erAl~~~P~~~--~a~l------e~~~g-----~~e~Ar~ 297 (521)
-+++....|.+.++|-.|.+... ..+ ...+|+.+|++|++..|... ++.+ ....+ .......
T Consensus 183 ~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~ 262 (372)
T 3ly7_A 183 QETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNT 262 (372)
T ss_dssp HHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHH
Confidence 44555667888777777665543 333 35789999999999999866 2211 11111 1222223
Q ss_pred HHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 298 IYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 298 ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
.+..+.........+.++..+.......|+++.|...+++++...|+...|+.++......|+ .+.|...|++|+..
T Consensus 263 a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~---~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 263 EIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGM---NREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhc
Confidence 333332222112246777777766667799999999999999999998888888999999998 99999999999999
Q ss_pred hccc
Q psy8681 378 LKAS 381 (521)
Q Consensus 378 ~~~~ 381 (521)
.|..
T Consensus 340 ~P~~ 343 (372)
T 3ly7_A 340 RPGA 343 (372)
T ss_dssp SCSH
T ss_pred CCCc
Confidence 9864
No 210
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.63 E-value=0.00016 Score=76.06 Aligned_cols=118 Identities=8% Similarity=-0.172 Sum_probs=84.0
Q ss_pred hcccchhhHHH-Hhhhc------cCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHH
Q psy8681 88 RDKERDREEED-ERKDE------GDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFA 154 (521)
Q Consensus 88 r~g~~e~Ar~~-eral~------~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a 154 (521)
.+|++++|..+ ++++. |..|| ...+...++.++...|++++|..+|+++|.. +|. ++.....+.++|
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 46777777777 77763 34566 3688999999999999999999999999986 443 334467777888
Q ss_pred HHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc----CChhh--HHHHHHHHHHHHHHcCChhhHHHH
Q psy8681 155 KFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH----IPKDR--TAEIYKAYTIHEKKYGDRAGIEDV 227 (521)
Q Consensus 155 ~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~----~P~~~--~~~l~~~~~~~e~~~G~~~~a~~~ 227 (521)
.+...+| ++++|..+|++||.. ++.+. ...+...+.......|....++.+
T Consensus 401 ~~~~~~G----------------------~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~ 457 (490)
T 3n71_A 401 LTNWHAG----------------------HIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFM 457 (490)
T ss_dssp HHHHHTT----------------------CHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCC----------------------CHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888 999999999999976 22221 124444555555455555555544
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.61 E-value=0.0011 Score=66.52 Aligned_cols=121 Identities=12% Similarity=-0.033 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHHcCChhhHHHHHHhhHHHHHHH--HHhhCCCCHHHHHHHHHHHHHc
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIH-EKKYGDRAGIEDVIVSKRKFQYEE--EVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~-e~~~G~~~~a~~~i~~krr~~ye~--al~~~P~~~~~W~~y~~~~~~~ 260 (521)
.+.+|+.+|++|++..|.......+..++.+ ....+..... .. ......++. ++...|.++.+|..++..+...
T Consensus 214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~-~~--~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~ 290 (372)
T 3ly7_A 214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEK-QL--AALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290 (372)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHH-HH--HHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchh-hH--HHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhC
Confidence 6799999999999999997633332233222 1222211111 00 011122332 2345788999998888888878
Q ss_pred CCHHHHHHHHHHHHHcCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCC
Q psy8681 261 GNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPR 307 (521)
Q Consensus 261 g~~~~Ar~~~erAl~~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~ 307 (521)
|+++.|...+++|+..+|... ++.+....|+.+.|...|++|+...|
T Consensus 291 gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 291 GKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 999999999999988876432 24445556666666666666666444
No 212
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.57 E-value=0.00011 Score=58.37 Aligned_cols=57 Identities=19% Similarity=0.221 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAE-IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAW 250 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~-l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W 250 (521)
+++.|...|++++...|.+. . +|..++......|+.+.+... |++++..+|.+..+|
T Consensus 15 ~~~~A~~~~~~al~~~p~~~--~~~~~~lg~~~~~~~~~~~A~~~--------~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 15 DIENALQALEEFLQTEPVGK--DEAYYLMGNAYRKLGDWQKALNN--------YQSAIELNPDSPALQ 72 (99)
T ss_dssp CHHHHHHHHHHHHHHCSSTH--HHHHHHHHHHHHHHTCHHHHHHH--------HHHHHHHCTTSTHHH
T ss_pred CHHHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHcCCHHHHHHH--------HHHHHhcCCCcHHHH
Confidence 55555555555555555443 3 444455555555555555444 555555555555544
No 213
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.52 E-value=0.0023 Score=59.09 Aligned_cols=131 Identities=15% Similarity=0.301 Sum_probs=94.1
Q ss_pred HHHHHHHHhh---CCCCHHHHHHHHHHHHHcC---C--HHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 233 KFQYEEEVNS---NPNNYDAWFDYLRLLEDEG---N--ADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 233 r~~ye~al~~---~P~~~~~W~~y~~~~~~~g---~--~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al 303 (521)
|..|+..|.. ..+-.+.|..|+.+...+. . -.....++++++..+..+. |
T Consensus 55 r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rY--------------------- 113 (223)
T 4aez_C 55 RMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLY--------------------- 113 (223)
T ss_dssp HHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGG---------------------
T ss_pred HHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccc---------------------
Confidence 4558888865 2344689999999988753 1 1235677888777654321 0
Q ss_pred cCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 304 SQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
.+++ -...+|..|+++ .+.++.+|.-+.... .+..+|+.||.++...|+ +..|..||..|+.....
T Consensus 114 knD~--RyLklWl~Ya~~------~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~A~~Vy~~Gi~~~A~ 182 (223)
T 4aez_C 114 KDDV--RYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGL---FQKADEVYQKGKRMKAK 182 (223)
T ss_dssp TTCH--HHHHHHHHHHTT------CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTCB
T ss_pred cCCH--HHHHHHHHHHHc------cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCc
Confidence 0000 025689999864 357889999998864 478999999999999999 99999999999998755
Q ss_pred chhhHHHHHHHHHHHHHHHH
Q psy8681 381 SSEKEERVMLLEAWKEFEAQ 400 (521)
Q Consensus 381 ~~~~~~~~~l~~~~~~fE~~ 400 (521)
.- ..|..++..|+.+
T Consensus 183 P~-----~rL~~~~~~F~~R 197 (223)
T 4aez_C 183 PF-----LRFQQKYQQFTHR 197 (223)
T ss_dssp SH-----HHHHHHHHHHHHH
T ss_pred cH-----HHHHHHHHHHHHH
Confidence 42 3678888887743
No 214
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.38 E-value=0.0033 Score=55.30 Aligned_cols=131 Identities=15% Similarity=0.201 Sum_probs=90.2
Q ss_pred HHHHHHHhhCC--CCHHHHHHHHHHHHHcC---CH-HHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCC
Q psy8681 234 FQYEEEVNSNP--NNYDAWFDYLRLLEDEG---NA-DLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQP 306 (521)
Q Consensus 234 ~~ye~al~~~P--~~~~~W~~y~~~~~~~g---~~-~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~ 306 (521)
..|+..|.... .-.+.|..|+.....+- .. .....++++++..+.++. | .++
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~Y---------------------knD 62 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRY---------------------YSD 62 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGG---------------------TTC
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhh---------------------ccC
Confidence 34777776422 23589999999988742 11 123556777666543221 0 000
Q ss_pred CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 307 ~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
+ -...+|..|+++. +.++.+|.-+.... .+..+|+.||.++...|+ +..|..||..|+.....+-
T Consensus 63 ~--RyLklWl~ya~~~------~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~---~~~A~~Iy~~Gi~~~A~P~- 130 (164)
T 2wvi_A 63 P--RFLNLWLKLGRLC------NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEAREN---FRKADAIFQEGIQQKAEPL- 130 (164)
T ss_dssp H--HHHHHHHHHHHHC------SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCBSH-
T ss_pred H--HHHHHHHHHHHhc------CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCcH-
Confidence 0 0256888888762 44888999988764 478999999999999998 9999999999999765442
Q ss_pred hHHHHHHHHHHHHHHHHc
Q psy8681 384 KEERVMLLEAWKEFEAQH 401 (521)
Q Consensus 384 ~~~~~~l~~~~~~fE~~~ 401 (521)
..|-.++..|+.+.
T Consensus 131 ----~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 131 ----ERLQSQHRQFQARV 144 (164)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHH
Confidence 36788888887764
No 215
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.33 E-value=0.0023 Score=50.92 Aligned_cols=66 Identities=14% Similarity=0.002 Sum_probs=55.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCchh-----HHHHHHHcCCHHHHHHHHHHHHcCCCC
Q psy8681 243 NPNNYDAWFDYLRLLEDEGN---ADLIRETYERAIANIPPTK-----FAELESLLGDMERARAIYELAISQPRL 308 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~---~~~Ar~~~erAl~~~P~~~-----~a~le~~~g~~e~Ar~ife~al~~~~~ 308 (521)
+|.++++|..|+..+.-.++ .++|+.+|++|+...|.+. ++......|+++.|...|++++...|.
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 68999999999999976554 6899999999999999876 567777888888888888888886543
No 216
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.31 E-value=0.0014 Score=52.23 Aligned_cols=72 Identities=10% Similarity=-0.099 Sum_probs=60.1
Q ss_pred CChhhHHHHHHHHHHHHHHcCC---hhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 199 IPKDRTAEIYKAYTIHEKKYGD---RAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 199 ~P~~~~~~l~~~~~~~e~~~G~---~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
.|.+. .++..|+......++ ...+... |+++|..+|.++.+++.++..+...|++.+|+..|++++.
T Consensus 2 ~p~~~--~~~~~~a~al~~~~~~~~~~~A~~~--------l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 2 NAVTA--TQLAAKATTLYYLHKQAMTDEVSLL--------LEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCCH--HHHHHHHHHHHHTTTTCCCHHHHHH--------HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCCH--HHHHHHHHHHHHhcCCCCCHHHHHH--------HHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 35554 788888877654444 4566655 9999999999999999999999999999999999999999
Q ss_pred cCCch
Q psy8681 276 NIPPT 280 (521)
Q Consensus 276 ~~P~~ 280 (521)
..|.+
T Consensus 72 ~~p~~ 76 (93)
T 3bee_A 72 SNDPN 76 (93)
T ss_dssp CCCTT
T ss_pred hCCCC
Confidence 99874
No 217
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.17 E-value=0.005 Score=48.41 Aligned_cols=65 Identities=11% Similarity=0.123 Sum_probs=50.6
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHH-HHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHH
Q psy8681 114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEK-LFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192 (521)
Q Consensus 114 ~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~-lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy 192 (521)
+..+..+...|+++.|...|++++...| .+.. +|..++......| +++.|...|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p---~~~~~~~~~lg~~~~~~~----------------------~~~~A~~~~ 58 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEP---VGKDEAYYLMGNAYRKLG----------------------DWQKALNNY 58 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCS---STHHHHHHHHHHHHHHHT----------------------CHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CcHHHHHHHHHHHHHHcC----------------------CHHHHHHHH
Confidence 4556677778888888888888888754 3566 7788887777777 888888888
Q ss_pred HHHHhcCChhh
Q psy8681 193 KYALDHIPKDR 203 (521)
Q Consensus 193 ~~aL~~~P~~~ 203 (521)
++++...|.+.
T Consensus 59 ~~al~~~p~~~ 69 (99)
T 2kc7_A 59 QSAIELNPDSP 69 (99)
T ss_dssp HHHHHHCTTST
T ss_pred HHHHhcCCCcH
Confidence 88888888776
No 218
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.13 E-value=0.009 Score=50.92 Aligned_cols=111 Identities=10% Similarity=-0.028 Sum_probs=77.2
Q ss_pred CHHHHHHHHHHHHHcCCchh-HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHh----cCChHHHHHHHH
Q psy8681 262 NADLIRETYERAIANIPPTK-FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVG----QGERDKVRELHE 336 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~~-~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~----~g~~~~Ar~l~e 336 (521)
++++|...|++|....+... ++.++...+.++.|...|+++.... +...+..+..++.. .+++++|...|+
T Consensus 10 d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 85 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELN----SGNGCRFLGDFYENGKYVKKDLRKAAQYYS 85 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCC----CHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 45677777777776543322 4445555567777888888888753 23456666666666 688999999999
Q ss_pred HHHhcCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHH
Q psy8681 337 RLLERTVHVKVWMNYAQFEMS-SGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 337 ral~~~~~~~vwi~ya~~e~~-~g~~~~~~~AR~vferAl~~ 377 (521)
++... .++..+..++.++.. .|...++++|..+|++|.+.
T Consensus 86 ~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 86 KACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 99876 577788888887776 12123399999999999876
No 219
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.87 E-value=0.0022 Score=66.32 Aligned_cols=88 Identities=13% Similarity=0.013 Sum_probs=71.0
Q ss_pred cccchhhHHH-Hhhhc------cCCCCC-hhhHHHHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHH
Q psy8681 89 DKERDREEED-ERKDE------GDRDSD-TTYGMRELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAK 155 (521)
Q Consensus 89 ~g~~e~Ar~~-eral~------~~~~P~-~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~ 155 (521)
+|+|++|..+ ++++. |..||+ ..++..++..+...|++++|..+|+++|.. +|. ++.....+.+++.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 5678888888 88763 234553 678999999999999999999999999976 443 3444677788888
Q ss_pred HHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 156 FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 156 ~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
....+| ++++|..+|++|+++
T Consensus 391 ~~~~qg----------------------~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 391 LYMGLE----------------------NKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred HHHhcc----------------------CHHHHHHHHHHHHHH
Confidence 888888 999999999999875
No 220
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.83 E-value=0.0038 Score=64.50 Aligned_cols=96 Identities=17% Similarity=0.050 Sum_probs=70.5
Q ss_pred cCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHh
Q psy8681 123 NGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALD 197 (521)
Q Consensus 123 ~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~ 197 (521)
.|++++|..+|+++|.. +|. ++.....+.+++.....+| ++++|..+|+++|.
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g----------------------~~~eA~~~~~~aL~ 368 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQ----------------------DWEGALKYGQKIIK 368 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTT----------------------CHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhc----------------------CHHHHHHHHHHHHH
Confidence 47899999999999986 332 3333566777777777777 99999999999986
Q ss_pred cCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 198 HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 198 ~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
. .++.+|. .+|.-...+.+++.++...|++++|..+|++|+.+
T Consensus 369 i---------------~~~~lG~---------------------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 369 P---------------YSKHYPV---------------------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp H---------------HHHHSCS---------------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H---------------HHHHcCC---------------------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 4 1123331 13333456788888899999999999999998764
No 221
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.83 E-value=0.026 Score=48.86 Aligned_cols=115 Identities=16% Similarity=0.248 Sum_probs=70.6
Q ss_pred HHHHHHHhhC-CCC-HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCC
Q psy8681 234 FQYEEEVNSN-PNN-YDAWFDYLRLLEDEG--NADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLD 309 (521)
Q Consensus 234 ~~ye~al~~~-P~~-~~~W~~y~~~~~~~g--~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~ 309 (521)
..||..|..- ..| .+.|..|+....++. .......++++++..+..+. . -..|
T Consensus 11 ~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~~lLErc~~~f~~~~----------------------~-YknD 67 (152)
T 4a1g_A 11 QMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLITLLEHLMKEFLDKK----------------------K-YHND 67 (152)
T ss_dssp HHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHHHHHHHHHHHHTTCG----------------------G-GTTC
T ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcccc----------------------c-ccCC
Confidence 3488877762 234 489999999998753 12235566777666433221 0 0000
Q ss_pred -CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 310 -MPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 310 -~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
-...+|..|+++ .+.++.+|.-+.... .+...|+.||.++...|+ +.+|..||+.|+.....
T Consensus 68 ~RyLklWl~ya~~------~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~---~~~A~~Vy~~Gi~~~A~ 133 (152)
T 4a1g_A 68 PRFISYCLKFAEY------NSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGE---LQHASAVLQRGIQNQAE 133 (152)
T ss_dssp HHHHHHHHHHHTT------BSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTTCB
T ss_pred HHHHHHHHHHHHh------cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCc
Confidence 024567777643 233777777777653 367777777777777777 77777777777776433
No 222
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=96.82 E-value=0.023 Score=48.36 Aligned_cols=106 Identities=9% Similarity=0.002 Sum_probs=64.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH----
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED---- 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~---- 259 (521)
++++|...|+++.+..+... . ++.+....+..+.+... |+++... .++.+++.++.++..
T Consensus 10 d~~~A~~~~~~aa~~g~~~a--~----lg~~y~~g~~~~~A~~~--------~~~Aa~~--g~~~a~~~Lg~~y~~G~g~ 73 (138)
T 1klx_A 10 DLKKAIQYYVKACELNEMFG--C----LSLVSNSQINKQKLFQY--------LSKACEL--NSGNGCRFLGDFYENGKYV 73 (138)
T ss_dssp HHHHHHHHHHHHHHTTCTTH--H----HHHHTCTTSCHHHHHHH--------HHHHHHT--TCHHHHHHHHHHHHHCSSS
T ss_pred CHHHHHHHHHHHHcCCCHhh--h----HHHHHHcCCCHHHHHHH--------HHHHHcC--CCHHHHHHHHHHHHcCCCC
Confidence 78888999999887754432 1 44443333444445544 7877765 677888888888776
Q ss_pred cCCHHHHHHHHHHHHHcCCchh---HHHHHHH----cCCHHHHHHHHHHHHcC
Q psy8681 260 EGNADLIRETYERAIANIPPTK---FAELESL----LGDMERARAIYELAISQ 305 (521)
Q Consensus 260 ~g~~~~Ar~~~erAl~~~P~~~---~a~le~~----~g~~e~Ar~ife~al~~ 305 (521)
.+++++|...|++|........ ++.++.. .++++.|...|++|...
T Consensus 74 ~~d~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 74 KKDLRKAAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 5677777777777766422211 3444444 45555555555555553
No 223
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.81 E-value=0.0068 Score=52.74 Aligned_cols=77 Identities=12% Similarity=0.031 Sum_probs=57.9
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC-Cchh------HHHHHHHcCCHHHHHHHHHH
Q psy8681 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEG---NADLIRETYERAIANI-PPTK------FAELESLLGDMERARAIYEL 301 (521)
Q Consensus 232 rr~~ye~al~~~P~~~~~W~~y~~~~~~~g---~~~~Ar~~~erAl~~~-P~~~------~a~le~~~g~~e~Ar~ife~ 301 (521)
.+..|++.+..+|.+.++.+.|+..+.++. ++.++..+|+..+... |... ++-.+.++|++++|+..++.
T Consensus 17 ~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 17 FEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 356699999999999999999999999988 5668999999998887 5222 23445566777777777777
Q ss_pred HHcCCCC
Q psy8681 302 AISQPRL 308 (521)
Q Consensus 302 al~~~~~ 308 (521)
+++..|.
T Consensus 97 lL~ieP~ 103 (152)
T 1pc2_A 97 LLQTEPQ 103 (152)
T ss_dssp HHHHCTT
T ss_pred HHhcCCC
Confidence 6664443
No 224
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=96.77 E-value=0.026 Score=51.14 Aligned_cols=137 Identities=13% Similarity=0.144 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHhc--CChhhHHHHHHHHHHHHHHc---CCh---hhHHHHHHhhHHHHHHHHHhh---------CCCC
Q psy8681 184 EHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKY---GDR---AGIEDVIVSKRKFQYEEEVNS---------NPNN 246 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~--~P~~~~~~l~~~~~~~e~~~---G~~---~~a~~~i~~krr~~ye~al~~---------~P~~ 246 (521)
.+...|..|+..|.. ...+....+|..|+.+-... |.. .... +..+++++.. +|..
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~-------~~lLErc~~~F~~~~rYkND~RY 79 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVL-------RSTMERCLIYIQDMETYRNDPRF 79 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHH-------HHHHHHHHHHHTTCGGGTTCHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchH-------HHHHHHHHHHhcccccccCCHHH
Confidence 667778888888876 33345568999999976543 222 1122 0237888874 3344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g 326 (521)
..+|+.|+.+. ..++...++.+|.-.....-. ...+.+|..|+.++...|
T Consensus 80 LklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG-----------------------------~~~AlfYe~wA~~lE~~g 129 (202)
T 3esl_A 80 LKIWIWYINLF-LSNNFHESENTFKYMFNKGIG-----------------------------TKLSLFYEEFSKLLENAQ 129 (202)
T ss_dssp HHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSS-----------------------------TTBHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhh-cccccCCHHHHHHHHHHCCCc-----------------------------HHHHHHHHHHHHHHHHcC
Confidence 68999999886 223345666666665443211 123456666666666666
Q ss_pred ChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q psy8681 327 ERDKVRELHERLLERT--VHVKVWMNYAQFEMS 357 (521)
Q Consensus 327 ~~~~Ar~l~eral~~~--~~~~vwi~ya~~e~~ 357 (521)
++.+|..+|+.+++.. |-..+--.+..|...
T Consensus 130 ~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~~R 162 (202)
T 3esl_A 130 FFLEAKVLLELGAENNCRPYNRLLRSLSNYEDR 162 (202)
T ss_dssp CHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 6666666666666654 444444445555543
No 225
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.67 E-value=0.028 Score=48.67 Aligned_cols=78 Identities=6% Similarity=0.035 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcC-C-hhhHHHHHHhhHHHHHHHHHhhC---------CCCHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG-D-RAGIEDVIVSKRKFQYEEEVNSN---------PNNYDAWFD 252 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G-~-~~~a~~~i~~krr~~ye~al~~~---------P~~~~~W~~ 252 (521)
....++..|+..|.....+....+|..|+.+-...- . ..... ..+++++... |....+|+.
T Consensus 5 ~~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~~~l~--------~lLErc~~~f~~~~~YknD~RyLklWl~ 76 (152)
T 4a1g_A 5 TPENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENKEYLI--------TLLEHLMKEFLDKKKYHNDPRFISYCLK 76 (152)
T ss_dssp HHHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCTHHHH--------HHHHHHHHHHTTCGGGTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCchhHH--------HHHHHHHHHhcccccccCCHHHHHHHHH
Confidence 446677789998888766667799999999876541 1 12233 3378887653 334578988
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 253 YLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 253 y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
|+.+. +.++.+|.-...
T Consensus 77 ya~~~------~dp~~if~~L~~ 93 (152)
T 4a1g_A 77 FAEYN------SDLHQFFEFLYN 93 (152)
T ss_dssp HHTTB------SCHHHHHHHHHT
T ss_pred HHHhc------CCHHHHHHHHHH
Confidence 88763 225556655444
No 226
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.31 E-value=0.035 Score=44.60 Aligned_cols=73 Identities=11% Similarity=-0.034 Sum_probs=62.2
Q ss_pred ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCc----cccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhh
Q psy8681 109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEE----NLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEE 184 (521)
Q Consensus 109 ~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~----~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (521)
++.-...+|......|++..|..-|+.|+...+.+ ...+.++..++......| +
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g----------------------~ 61 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQG----------------------D 61 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTT----------------------C
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHcc----------------------C
Confidence 45667889999999999999999999999975322 235788888888888887 9
Q ss_pred HHHHHHHHHHHHhcCChhh
Q psy8681 185 HERARVIYKYALDHIPKDR 203 (521)
Q Consensus 185 ~e~Ar~iy~~aL~~~P~~~ 203 (521)
++.|..+|++++...|.+.
T Consensus 62 ~~~A~~~~~~al~l~P~~~ 80 (104)
T 2v5f_A 62 LDKALLLTKKLLELDPEHQ 80 (104)
T ss_dssp HHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhcCCCCH
Confidence 9999999999999999886
No 227
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.26 E-value=0.009 Score=61.58 Aligned_cols=91 Identities=12% Similarity=-0.043 Sum_probs=72.2
Q ss_pred HHhcccchhhHHH-Hhhhc------cCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHh----cCC-ccccHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDE------GDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEF----FGE-ENLDEKLFIA 152 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~------~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~ 152 (521)
..++|++++|..+ ++++. |..|| -..+...++..+...|++++|..+|+++|.. +|. ++.....+.+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n 376 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK 376 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence 3457888999999 88873 12344 2678999999999999999999999999976 443 3344667778
Q ss_pred HHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHHhc
Q psy8681 153 FAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH 198 (521)
Q Consensus 153 ~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL~~ 198 (521)
++.....+| ++++|..+|++|++.
T Consensus 377 La~~~~~~g----------------------~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 377 VGKLQLHQG----------------------MFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHTT----------------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC----------------------CHHHHHHHHHHHHHH
Confidence 888888887 999999999999875
No 228
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=96.16 E-value=0.073 Score=46.72 Aligned_cols=126 Identities=10% Similarity=0.183 Sum_probs=72.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHHHHH-c--CChh-hHHHHHHhhHHHHHHHHHhhCC---------CCHHHHHHHHHH
Q psy8681 190 VIYKYALDHIPKDRTAEIYKAYTIHEKK-Y--GDRA-GIEDVIVSKRKFQYEEEVNSNP---------NNYDAWFDYLRL 256 (521)
Q Consensus 190 ~iy~~aL~~~P~~~~~~l~~~~~~~e~~-~--G~~~-~a~~~i~~krr~~ye~al~~~P---------~~~~~W~~y~~~ 256 (521)
..|+..|.....+....+|..|+.+-.. + |... .+.. .+++++...- ....+|+.|+.+
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~--------lLErc~~~f~~~~~YknD~RyLklWl~ya~~ 75 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMST--------LLERAVEALQGEKRYYSDPRFLNLWLKLGRL 75 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHH--------HHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHH--------HHHHHHHHhhhhhhhccCHHHHHHHHHHHHh
Confidence 3455555543344456899999988654 3 2222 2333 3888887643 335789998877
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8681 257 LEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHE 336 (521)
Q Consensus 257 ~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~e 336 (521)
. ++ .+.+|.-+..+ .-....+.+|..|+.++...|++..|..+|.
T Consensus 76 ~---~~---p~~if~~L~~~-----------------------------~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~ 120 (164)
T 2wvi_A 76 C---NE---PLDMYSYLHNQ-----------------------------GIGVSLAQFYISWAEEYEARENFRKADAIFQ 120 (164)
T ss_dssp C---SC---HHHHHHHHHHT-----------------------------TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred c---CC---HHHHHHHHHHC-----------------------------CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4 22 44455544332 1112245666667666666777777777777
Q ss_pred HHHhcC--CCHHHHHHHHHHHHHc
Q psy8681 337 RLLERT--VHVKVWMNYAQFEMSS 358 (521)
Q Consensus 337 ral~~~--~~~~vwi~ya~~e~~~ 358 (521)
.+++.. |...+--.+..|....
T Consensus 121 ~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 121 EGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHH
Confidence 777654 4455555566666553
No 229
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.16 E-value=0.022 Score=58.62 Aligned_cols=97 Identities=9% Similarity=-0.057 Sum_probs=70.0
Q ss_pred HcCChhHHHHHHHHHHHh----cCC-ccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHHHHHHHHH
Q psy8681 122 QNGFVSGARKVYERAVEF----FGE-ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYAL 196 (521)
Q Consensus 122 ~~g~~~~Ar~vye~Al~~----~~~-~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar~iy~~aL 196 (521)
..|.+++|..+|++++.. +|. ++....++.+++.....+| ++++|..+|+++|
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g----------------------~~~eA~~~~~~~L 356 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLG----------------------LLEEALFYGTRTM 356 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHT----------------------CHHHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhc----------------------cHHHHHHHHHHHH
Confidence 468999999999999975 332 2333566667777777777 9999999999988
Q ss_pred hcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q psy8681 197 DHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276 (521)
Q Consensus 197 ~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~ 276 (521)
.. + ++.+|. .+|.-...++.++.++...|++++|...|++|+..
T Consensus 357 ~i---------~------~~~lg~---------------------~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 357 EP---------Y------RIFFPG---------------------SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HH---------H------HHHSCS---------------------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hh---------H------HHHcCC---------------------CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 54 1 112231 13333456788888889999999999999998764
No 230
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.02 E-value=0.1 Score=47.98 Aligned_cols=131 Identities=13% Similarity=0.229 Sum_probs=78.2
Q ss_pred hHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHc---CC-h-hhHHHHHHhhHHHHHHHHHhhCC---------CCHH
Q psy8681 184 EHERARVIYKYALDHI-PKDRTAEIYKAYTIHEKKY---GD-R-AGIEDVIVSKRKFQYEEEVNSNP---------NNYD 248 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~-P~~~~~~l~~~~~~~e~~~---G~-~-~~a~~~i~~krr~~ye~al~~~P---------~~~~ 248 (521)
.+...|..|+..|... ..+....+|..|+.+-... |. . .....+ +++++...- ....
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~l--------LErc~~~F~~~~rYknD~RyLk 121 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTL--------LERCTREFVRNPLYKDDVRYLR 121 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHH--------HHHHHHHTTTCGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHH--------HHHHHHHhcccccccCCHHHHH
Confidence 5667777888877652 2233458999999976654 22 1 124444 888887643 3357
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCCh
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~ 328 (521)
+|+.|+.+. +..+.+|.-.... .-....+.+|..|+.++...|++
T Consensus 122 lWl~Ya~~~------~~p~~if~~L~~~-----------------------------~IG~~~AlfYe~wA~~lE~~g~~ 166 (223)
T 4aez_C 122 IWMQYVNYI------DEPVELFSFLAHH-----------------------------HIGQESSIFYEEYANYFESRGLF 166 (223)
T ss_dssp HHHHHHTTC------SCHHHHHHHHHHT-----------------------------TCSTTBHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcc------CCHHHHHHHHHHC-----------------------------CcchhHHHHHHHHHHHHHHcCCH
Confidence 899998752 2344555544332 11122456777777777777777
Q ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHH
Q psy8681 329 DKVRELHERLLERT--VHVKVWMNYAQFEMS 357 (521)
Q Consensus 329 ~~Ar~l~eral~~~--~~~~vwi~ya~~e~~ 357 (521)
..|..+|+.+++.. |-..+--.+..|...
T Consensus 167 ~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R 197 (223)
T 4aez_C 167 QKADEVYQKGKRMKAKPFLRFQQKYQQFTHR 197 (223)
T ss_dssp HHHHHHHHHHHHHTCBSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHHH
Confidence 77777777777654 444444445554443
No 231
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.15 Score=44.15 Aligned_cols=87 Identities=13% Similarity=-0.012 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhcC-C--CHHHHHHHHHHHHHcCCchhh
Q psy8681 291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG---ERDKVRELHERLLERT-V--HVKVWMNYAQFEMSSGDEDSV 364 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g---~~~~Ar~l~eral~~~-~--~~~vwi~ya~~e~~~g~~~~~ 364 (521)
.+..++..|...+...+. +......|+-.+.+.. ++.++..+|+.++... | +.+.+..++....+.++ +
T Consensus 13 ~l~~~~~~y~~e~~~~~~--~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~---Y 87 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSV--SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE---Y 87 (152)
T ss_dssp HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSC---H
T ss_pred HHHHHHHHHHHHHccCCC--cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccC---H
Confidence 456778888888775443 4567778888888877 6779999999999987 6 57788888888899998 9
Q ss_pred HHHHHHHHHHHHHhccch
Q psy8681 365 SLARRVFERANQALKASS 382 (521)
Q Consensus 365 ~~AR~vferAl~~~~~~~ 382 (521)
++|+..++++++.-|.+.
T Consensus 88 ~~A~~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 88 EKALKYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhcCCCCH
Confidence 999999999999999874
No 232
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.58 E-value=0.12 Score=41.26 Aligned_cols=64 Identities=9% Similarity=0.031 Sum_probs=53.0
Q ss_pred hhHHHHHHHHHHHHhcCC-----hhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHH
Q psy8681 183 EEHERARVIYKYALDHIP-----KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYL 254 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P-----~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~ 254 (521)
+++..|...|+.|+...+ ......++..++....+.|+.+.|... |++++...|.+..+..++.
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~--------~~~al~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLL--------TKKLLELDPEHQRANGNLK 87 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHH--------HHHHHhcCCCCHHHHhhHH
Confidence 399999999999998742 122347888888888999999999877 9999999999988876665
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.66 E-value=0.19 Score=42.03 Aligned_cols=79 Identities=14% Similarity=0.052 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcC-Cchh------HHHHHHHcCCHHHHHHHHH
Q psy8681 231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL---IRETYERAIANI-PPTK------FAELESLLGDMERARAIYE 300 (521)
Q Consensus 231 krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~---Ar~~~erAl~~~-P~~~------~a~le~~~g~~e~Ar~ife 300 (521)
+.+..|++++..++.+.++-+.|+..+..+.+... ...+++..+... |... +|-...++|++++|+..++
T Consensus 19 ~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 19 KFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 34566999988888999999999999998876555 777788777765 4222 2344556666666666666
Q ss_pred HHHcCCCCC
Q psy8681 301 LAISQPRLD 309 (521)
Q Consensus 301 ~al~~~~~~ 309 (521)
..+...|.+
T Consensus 99 ~lL~~eP~n 107 (126)
T 1nzn_A 99 GLLQTEPQN 107 (126)
T ss_dssp HHHHHCTTC
T ss_pred HHHHhCCCC
Confidence 666654433
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.93 E-value=8.8 Score=41.96 Aligned_cols=60 Identities=10% Similarity=0.124 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERA 273 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erA 273 (521)
.+...-+.|....|+.+-|..+ -.+|+...|.+...|..++..+...|+++.|.-.+..+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~--------Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGV--------SNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccCcHHHHHHH--------HHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3555567888888999888877 88999999999999999999999999999988776554
No 235
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.63 E-value=6.6 Score=39.45 Aligned_cols=92 Identities=9% Similarity=-0.064 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCchh-----------HHHHHHHcCCHHHHHHHHHHHHcC-----CCCCCcHHHH
Q psy8681 252 DYLRLLEDEGNADLIRETYERAIANIPPTK-----------FAELESLLGDMERARAIYELAISQ-----PRLDMPELVW 315 (521)
Q Consensus 252 ~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-----------~a~le~~~g~~e~Ar~ife~al~~-----~~~~~~~~lw 315 (521)
.++.++...|++.+|..++.+....+.... -..++..+|++.+++++|..|... ++......+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 688999999999999999999888654411 245677899999999999998752 1111224555
Q ss_pred HHHHHHHH-hcCChHHHHHHHHHHHhcCC
Q psy8681 316 KAYIDFEV-GQGERDKVRELHERLLERTV 343 (521)
Q Consensus 316 ~~yi~~e~-~~g~~~~Ar~l~eral~~~~ 343 (521)
...+-+.. ..++|..|-..|-.++..++
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~ 212 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEGFD 212 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhccc
Confidence 55666788 89999999999988887653
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=92.99 E-value=1.4 Score=48.19 Aligned_cols=67 Identities=9% Similarity=-0.152 Sum_probs=54.2
Q ss_pred HHHHhcCChhhhhhhcCCCcH----HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q psy8681 65 AMEEKQGNKIGEEGANKENEE----EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAV 137 (521)
Q Consensus 65 ~~e~~~gn~~~Ar~ife~P~~----e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~Al 137 (521)
.+.+..|..+.|..+.++|.. .+.+|+++.|..+ ... .+...|..++.+..+.|+++.|..+|.++=
T Consensus 637 ~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 637 RFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 455677788888877776654 6778899988887 432 467899999999999999999999999873
No 237
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=92.82 E-value=0.61 Score=52.51 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 312 ELVWKAYIDFEVGQGERDKVRELHERLLERT--VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 312 ~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~--~~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
...|+..|+-+++.|.+++|..+|+.+.... |++-.|..++..+.+.|. ..+.|..+|+.+...
T Consensus 165 vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~--~~e~A~~Ll~EM~~k 230 (1134)
T 3spa_A 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ--DAGTIERCLEQMSQE 230 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTC--CHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHHc
Confidence 4556666666666666666666666665543 566666666665555553 124556666666554
No 238
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=90.45 E-value=2.4 Score=47.79 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCchh----HHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHH
Q psy8681 247 YDAWFDYLRLLEDEGNADLIRETYERAIA-----NIPPTK----FAELESLLGDMERARAIYELAISQPRLDMPELVWKA 317 (521)
Q Consensus 247 ~~~W~~y~~~~~~~g~~~~Ar~~~erAl~-----~~P~~~----~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~ 317 (521)
...+..++..+.+.|++++|..+|..+.. ..|+.. ++.-+.+.|.+++|..+|+...... ..++...++.
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G-~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG-LTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-CCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-CCCcHHHHHH
Confidence 34688899999999999999999977543 245543 4455678899999999999998743 2235778999
Q ss_pred HHHHHHhcCCh-HHHHHHHHHHHhcC--CCHHHHH
Q psy8681 318 YIDFEVGQGER-DKVRELHERLLERT--VHVKVWM 349 (521)
Q Consensus 318 yi~~e~~~g~~-~~Ar~l~eral~~~--~~~~vwi 349 (521)
.|+.+.+.|.. +.|..+|+.+.... |+.-++.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~ 240 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTA 240 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcc
Confidence 99999999985 78999999999864 4444333
No 239
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.07 E-value=23 Score=35.44 Aligned_cols=98 Identities=12% Similarity=-0.051 Sum_probs=68.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC-CCCCc---HHHHHHHHHHHHhcCChHHHHHHHHHHHhcC----CC----HHHHH
Q psy8681 282 FAELESLLGDMERARAIYELAISQP-RLDMP---ELVWKAYIDFEVGQGERDKVRELHERLLERT----VH----VKVWM 349 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~-~~~~~---~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~----~~----~~vwi 349 (521)
++.++...|++.+|..++....... ..+.. ..+...=+.++...+++.+++.+|..+.... ++ +.+..
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 6777888999999999999887731 11222 2344444567788899999999999887642 33 33444
Q ss_pred HHHHHHH-HcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 350 NYAQFEM-SSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 350 ~ya~~e~-~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
.-|.+.. ..++ +..|-..|-.++..+...+
T Consensus 185 ~~Gi~~l~~~rd---yk~A~~~F~eaf~~f~~~~ 215 (394)
T 3txn_A 185 QSGILHAADERD---FKTAFSYFYEAFEGFDSVD 215 (394)
T ss_dssp HHHHHHHHTTSC---HHHHHHHHHHHHHHHTTTC
T ss_pred HhhHHHHHhccC---HHHHHHHHHHHHhcccccc
Confidence 4566666 5666 9999999988887765443
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=86.98 E-value=5.5 Score=33.81 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=56.5
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN---ADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~---~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al 303 (521)
+..|+..+. .+-+.++-+.|+..+..+.+ +.++..+++..+...|... +|--..++|++++|+...+..+
T Consensus 26 r~qY~~E~~-~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL 104 (144)
T 1y8m_A 26 RQQVVSEGG-PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 104 (144)
T ss_dssp HHHHHHTTS-TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344665422 35578899999999988875 4467778888888777543 2333557778888888777777
Q ss_pred cCCCCCCcHHHHHHHH
Q psy8681 304 SQPRLDMPELVWKAYI 319 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi 319 (521)
+..|.+.........|
T Consensus 105 ~~eP~n~QA~~Lk~~I 120 (144)
T 1y8m_A 105 EHERNNKQVGALKSMV 120 (144)
T ss_dssp HTCCCCHHHHHHHHHH
T ss_pred hcCCCcHHHHHHHHHH
Confidence 7666543444444443
No 241
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.74 E-value=5.4 Score=33.40 Aligned_cols=86 Identities=13% Similarity=0.073 Sum_probs=56.4
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCchh------HHHHHHHcCCHHHHHHHHHHHH
Q psy8681 233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGN---ADLIRETYERAIANIPPTK------FAELESLLGDMERARAIYELAI 303 (521)
Q Consensus 233 r~~ye~al~~~P~~~~~W~~y~~~~~~~g~---~~~Ar~~~erAl~~~P~~~------~a~le~~~g~~e~Ar~ife~al 303 (521)
+..|++-+ ...-+..+-+.|+-.+..+.+ ..++..+++..+...|... +|--..++|++++|+...+..+
T Consensus 27 ~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL 105 (134)
T 3o48_A 27 RQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLF 105 (134)
T ss_dssp HHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34466654 222367888999988888765 4467788888888777433 2334567788888888888888
Q ss_pred cCCCCCCcHHHHHHHH
Q psy8681 304 SQPRLDMPELVWKAYI 319 (521)
Q Consensus 304 ~~~~~~~~~~lw~~yi 319 (521)
...|.+..+......|
T Consensus 106 ~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 106 EHERNNKQVGALKSMV 121 (134)
T ss_dssp TTCTTCHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHH
Confidence 8666543444344433
No 242
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=86.61 E-value=11 Score=40.95 Aligned_cols=120 Identities=10% Similarity=-0.018 Sum_probs=73.1
Q ss_pred HHHHHHHHHcCChhhHHHHHHhh--------HHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 209 KAYTIHEKKYGDRAGIEDVIVSK--------RKFQYEEEVN--SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 209 ~~~~~~e~~~G~~~~a~~~i~~k--------rr~~ye~al~--~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
...+.+..+.|..+.+..++... ....++.|+. ....+...|..++.+..+.++++.|..+|.++-..
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~-- 710 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDL-- 710 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCH--
T ss_pred HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccCh--
Confidence 55556666677666554332100 0011233333 24567899999999999999999999999985211
Q ss_pred chhHHHHHHHcCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q psy8681 279 PTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338 (521)
Q Consensus 279 ~~~~a~le~~~g~~e~Ar~ife~al~~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~era 338 (521)
.....++...|+.+....+-+.+...... .....++...|++++|.++|..+
T Consensus 711 -~~l~~l~~~~~~~~~~~~~~~~a~~~~~~-------~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 711 -ESLFLLHSSFNNKEGLVTLAKDAETTGKF-------NLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHTTCH-------HHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -hhhHHHHHHcCCHHHHHHHHHHHHHcCch-------HHHHHHHHHcCCHHHHHHHHHHc
Confidence 01345566677777777776666654321 12223344578888888887654
No 243
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=85.79 E-value=4.4 Score=33.61 Aligned_cols=91 Identities=8% Similarity=-0.078 Sum_probs=63.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhC-C-CCHHHHHHHHHHHHHcC
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN-P-NNYDAWFDYLRLLEDEG 261 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~-P-~~~~~W~~y~~~~~~~g 261 (521)
.+..++.-|...+...+.+. ..-..|+-......+...+... ...++..+..+ | ..-+..+.++-.+.+.|
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~--~~~F~yAw~Lv~S~~~~d~~~G-----I~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSK--STQFEYAWCLVRTRYNDDIRKG-----IVLLEELLPKGSKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCH--HHHHHHHHHHTTSSSHHHHHHH-----HHHHHHHTTTSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccCCCcH--HHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHHhcCCcchHHHHHHHHHHHHHHhh
Confidence 67778888888887655444 4455555444455555443322 13467766665 5 45677777888889999
Q ss_pred CHHHHHHHHHHHHHcCCchh
Q psy8681 262 NADLIRETYERAIANIPPTK 281 (521)
Q Consensus 262 ~~~~Ar~~~erAl~~~P~~~ 281 (521)
+++.|+..++..+...|.+.
T Consensus 89 ~Y~~A~~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 89 EYEKALKYVRGLLQTEPQNN 108 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCH
T ss_pred hHHHHHHHHHHHHHhCCCCH
Confidence 99999999999999999764
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.69 E-value=7.2 Score=39.04 Aligned_cols=57 Identities=18% Similarity=0.125 Sum_probs=28.9
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHH
Q psy8681 318 YIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERANQA 377 (521)
Q Consensus 318 yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~ 377 (521)
.+..+...|++..|...+.+++..+| +-.+|..+...+...|+ ...|..+|++....
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr---~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDR---QSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTC---HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHH
Confidence 34444455555555555555555555 33455555555555554 55555555554443
No 245
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=83.42 E-value=8.2 Score=38.59 Aligned_cols=84 Identities=14% Similarity=0.051 Sum_probs=53.2
Q ss_pred hhHHHHHHHHHHHHhcCChhh-------------H-------HHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhh
Q psy8681 183 EEHERARVIYKYALDHIPKDR-------------T-------AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~-------------~-------~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~ 242 (521)
++.+.|...+..||..+.... . ..+...++......|+...+... +..++..
T Consensus 129 ~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~--------l~~~~~~ 200 (388)
T 2ff4_A 129 GRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE--------LEALTFE 200 (388)
T ss_dssp TCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH--------HHHHHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH--------HHHHHHh
Confidence 356777788888887742210 0 01122233344455666655544 6777777
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8681 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274 (521)
Q Consensus 243 ~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl 274 (521)
+|.+..+|..++..+...|+..+|..+|+++-
T Consensus 201 ~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 201 HPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888888888888888888888888777753
No 246
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.74 E-value=11 Score=35.68 Aligned_cols=57 Identities=16% Similarity=0.236 Sum_probs=46.9
Q ss_pred HcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh
Q psy8681 217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281 (521)
Q Consensus 217 ~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~ 281 (521)
+.|+...+... ....|..+|.|.+....|+.++.-.|+.++|..-++-+.+..|...
T Consensus 9 ~~g~L~~al~~--------~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 9 SEGQLQQALEL--------LIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTTCHHHHHHH--------HHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred hCCCHHHHHHH--------HHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 34555555544 8888899999999999999999999999999999999888888754
No 247
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.98 E-value=17 Score=31.60 Aligned_cols=119 Identities=11% Similarity=0.062 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccc--c----HHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENL--D----EKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~--~----~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
....+..++.....|-++.|+-+...++....+++. . ..+...+++.....+
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~---------------------- 77 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDK---------------------- 77 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHccc----------------------
Confidence 455667777788899999999999998876432211 1 223444555544444
Q ss_pred hHHHHHHHHHHHHhc---CChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHc
Q psy8681 184 EHERARVIYKYALDH---IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~---~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~ 260 (521)
+|.+|...|++||.. .|.... .... .|. ... +..... .+.+.++-+..+..+...
T Consensus 78 eyrrA~~~y~qALq~~k~l~k~~s--~~~~-------~~~----~ss--------~p~s~~-~~~e~Elkykia~C~~~l 135 (167)
T 3ffl_A 78 EYRNAVSKYTMALQQKKALSKTSK--VRPS-------TGN----SAS--------TPQSQC-LPSEIEVKYKLAECYTVL 135 (167)
T ss_dssp CHHHHHHHHHHHHHHHHCC-----------------------------------------C-CCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC--cccc-------ccc----cCC--------Cccccc-ccchHHHHHHHHHHHHHH
Confidence 999999999999865 343321 0000 010 101 222222 244667888889999999
Q ss_pred CCHHHHHHHHHH
Q psy8681 261 GNADLIRETYER 272 (521)
Q Consensus 261 g~~~~Ar~~~er 272 (521)
++...|..+++.
T Consensus 136 ~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 136 KQDKDAIAILDG 147 (167)
T ss_dssp TCHHHHHHHHHT
T ss_pred CCHHHHHHHHhc
Confidence 999999888776
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=80.57 E-value=29 Score=30.44 Aligned_cols=58 Identities=21% Similarity=0.311 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchhHHHHHHHcCCHHHHHHHHHHHHcC
Q psy8681 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQ 305 (521)
Q Consensus 245 ~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~~a~le~~~g~~e~Ar~ife~al~~ 305 (521)
.+...|..++......|+++-|..+|.++=.. +...-|+...|+.+.-..+-+.+...
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~---~~L~~Ly~~tg~~e~L~kla~iA~~~ 89 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQHSF---DKLSFLYLVTGDVNKLSKMQNIAQTR 89 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH---HHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH---HHHHHHHHHhCCHHHHHHHHHHHHHC
Confidence 57889999999999999999999999883110 00233455556666555555555443
No 249
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=78.05 E-value=29 Score=30.48 Aligned_cols=45 Identities=16% Similarity=0.088 Sum_probs=27.5
Q ss_pred HHhcccchhhHHH-HhhhccCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q psy8681 86 EERDKERDREEED-ERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERA 136 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P~~~~W~~~a~~e~~~g~~~~Ar~vye~A 136 (521)
.+.+|+++.|..+ +.. .+...|..++......|+++-|..+|.++
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 4455666666666 433 23556777777666666766666666665
No 250
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=73.17 E-value=29 Score=28.92 Aligned_cols=75 Identities=5% Similarity=-0.152 Sum_probs=51.7
Q ss_pred CCCChhhHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhh
Q psy8681 106 RDSDTTYGMRELVFEEQNGF---VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQY 182 (521)
Q Consensus 106 ~~P~~~~W~~~a~~e~~~g~---~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (521)
-+|++.+=+.|+-.+.+..+ ..+++.+++..+...|.. .-..+.-+|--..+.|
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~--~Rd~LYyLAvg~yklg--------------------- 92 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLG--------------------- 92 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--HHHHHHHHHHHHHHHT---------------------
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcch--hHHHHHHHHHHHHHhh---------------------
Confidence 34577777888877777654 456788888888764321 2333333333344455
Q ss_pred hhHHHHHHHHHHHHhcCChhhH
Q psy8681 183 EEHERARVIYKYALDHIPKDRT 204 (521)
Q Consensus 183 ~~~e~Ar~iy~~aL~~~P~~~~ 204 (521)
+|++|+...+.+|+..|.+..
T Consensus 93 -dY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 93 -EYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp -CHHHHHHHHHHHHTTCTTCHH
T ss_pred -hHHHHHHHHHHHHhhCCCCHH
Confidence 999999999999999999874
No 251
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=72.82 E-value=32 Score=37.60 Aligned_cols=113 Identities=11% Similarity=0.118 Sum_probs=76.3
Q ss_pred HcCC-HHHHHHHHHHHHHcCCchh--HHHHH----HHc-CCHHHHHHHHHHHHc--------CCCCCC--------cHHH
Q psy8681 259 DEGN-ADLIRETYERAIANIPPTK--FAELE----SLL-GDMERARAIYELAIS--------QPRLDM--------PELV 314 (521)
Q Consensus 259 ~~g~-~~~Ar~~~erAl~~~P~~~--~a~le----~~~-g~~e~Ar~ife~al~--------~~~~~~--------~~~l 314 (521)
-.++ .+.|..+|++.....|... |+... ... ...-.|.++...+++ .++.+. ...+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~L 339 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDL 339 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHH
Confidence 3444 5778888888888777644 22111 111 234455555555543 122111 1234
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Q psy8681 315 WKAYIDFEVGQGERDKVRELHERLLERTV-HVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374 (521)
Q Consensus 315 w~~yi~~e~~~g~~~~Ar~l~eral~~~~-~~~vwi~ya~~e~~~g~~~~~~~AR~vferA 374 (521)
...=++|+...|+++-|..+-++++...| .-..|..++..+...|+ ++.|.-.+..+
T Consensus 340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d---~e~ALLtLNSc 397 (754)
T 4gns_B 340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEE---YEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC---HHHHHHHHHHS
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhcc---HHHHHHHHhcC
Confidence 45557788999999999999999999998 58999999999999999 88888665443
No 252
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=69.77 E-value=25 Score=33.16 Aligned_cols=114 Identities=8% Similarity=-0.020 Sum_probs=77.6
Q ss_pred HHhcccchhhHHH-HhhhccCCCC-ChhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhh
Q psy8681 86 EERDKERDREEED-ERKDEGDRDS-DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREK 163 (521)
Q Consensus 86 e~r~g~~e~Ar~~-eral~~~~~P-~~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~ 163 (521)
.++.|.++.|+.. ...| ..+| +...-..++++++-.|+.++|.+-++.+..+.|.......+|..++..|......
T Consensus 7 ll~~g~L~~al~~~~~~V--R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R~~v 84 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 84 (273)
T ss_dssp HTTTTCHHHHHHHHHHHH--HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999 9999 9999 8999999999999999999999999999999764322344555565555433311
Q ss_pred cc-----ccch---hhHHHHHhh--hhhhhhHHHHHHHHHHHHhcCCh
Q psy8681 164 YG-----DRAG---IEDVIVSKR--KFQYEEHERARVIYKYALDHIPK 201 (521)
Q Consensus 164 ~~-----~~~~---~~~~~l~~~--~~~~~~~e~Ar~iy~~aL~~~P~ 201 (521)
|. ..+. -|...+-.. ....|+.+.|..+-..|++.-|.
T Consensus 85 faG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 85 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 11 1111 122222221 23346778888888888776554
No 253
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=67.84 E-value=60 Score=28.10 Aligned_cols=92 Identities=22% Similarity=0.191 Sum_probs=52.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhcC---CC-------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHHhcc---c----
Q psy8681 319 IDFEVGQGERDKVRELHERLLERT---VH-------VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKA---S---- 381 (521)
Q Consensus 319 i~~e~~~g~~~~Ar~l~eral~~~---~~-------~~vwi~ya~~e~~~g~~~~~~~AR~vferAl~~~~~---~---- 381 (521)
+......|.|+.|+-+...++... ++ ..+.+.+|......++ +.+|...|++|+..... +
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~e---yrrA~~~y~qALq~~k~l~k~~s~~ 103 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKE---YRNAVSKYTMALQQKKALSKTSKVR 103 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHCC-------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccH---HHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 444555666666666666655432 11 2244555555555555 66666666666554321 1
Q ss_pred ----------------hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHhhCchh
Q psy8681 382 ----------------SEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRR 417 (521)
Q Consensus 382 ----------------~~~~~~~~l~~~~~~fE~~~G~~~~~~~v~~~~p~~ 417 (521)
.+.+-+..+-..+. ..|....+-.++...|-+
T Consensus 104 ~~~~~~ss~p~s~~~~~e~Elkykia~C~~----~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 104 PSTGNSASTPQSQCLPSEIEVKYKLAECYT----VLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp -------------CCCCHHHHHHHHHHHHH----HTTCHHHHHHHHHTSCGG
T ss_pred ccccccCCCcccccccchHHHHHHHHHHHH----HHCCHHHHHHHHhcCCch
Confidence 11233455555555 678888888888888743
No 254
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.62 E-value=28 Score=35.18 Aligned_cols=98 Identities=11% Similarity=0.046 Sum_probs=71.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC-CCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcC---CCHHHHH----HHHH
Q psy8681 282 FAELESLLGDMERARAIYELAISQP-RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWM----NYAQ 353 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~-~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~---~~~~vwi----~ya~ 353 (521)
++.++...|+++.|..+|.++...+ .......++...+.+....+++..+...+.++-... +++.... ..+.
T Consensus 137 la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl 216 (429)
T 4b4t_R 137 LGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGI 216 (429)
T ss_dssp HHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHH
Confidence 7888999999999999999987732 122245677788888888999999999999986653 4544332 2334
Q ss_pred HHHHcCCchhhHHHHHHHHHHHHHhccch
Q psy8681 354 FEMSSGDEDSVSLARRVFERANQALKASS 382 (521)
Q Consensus 354 ~e~~~g~~~~~~~AR~vferAl~~~~~~~ 382 (521)
+....++ +..|-..|-.++..+...+
T Consensus 217 ~~l~~r~---f~~Aa~~f~e~~~t~~~~e 242 (429)
T 4b4t_R 217 HCLAVRN---FKEAAKLLVDSLATFTSIE 242 (429)
T ss_dssp GGGGTSC---HHHHHHHHHHHHHHSCCSC
T ss_pred HHHHhCh---HHHHHHHHHHHhccCCccc
Confidence 4444455 9999998888887766544
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=65.74 E-value=69 Score=32.19 Aligned_cols=67 Identities=7% Similarity=-0.061 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHcCChhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhhhHHHHH
Q psy8681 110 TTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERAR 189 (521)
Q Consensus 110 ~~~W~~~a~~e~~~g~~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~Ar 189 (521)
..++..+|.++.+.|+++.|.++|.++............++...+.+....+ ++..+.
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~----------------------d~~~~~ 188 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYN----------------------DQLYVK 188 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHT----------------------CHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc----------------------cHHHHH
Confidence 4689999999999999999999999998865433334677777777776666 888888
Q ss_pred HHHHHHHhc
Q psy8681 190 VIYKYALDH 198 (521)
Q Consensus 190 ~iy~~aL~~ 198 (521)
..+.++-..
T Consensus 189 ~~~~ka~~~ 197 (429)
T 4b4t_R 189 EKLEAVNSM 197 (429)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888887544
No 256
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=64.45 E-value=64 Score=27.18 Aligned_cols=75 Identities=5% Similarity=-0.147 Sum_probs=51.9
Q ss_pred CCChhhHHHHHHHHHHcCC---hhHHHHHHHHHHHhcCCccccHHHHHHHHHHHHhhhhhccccchhhHHHHHhhhhhhh
Q psy8681 107 DSDTTYGMRELVFEEQNGF---VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYE 183 (521)
Q Consensus 107 ~P~~~~W~~~a~~e~~~g~---~~~Ar~vye~Al~~~~~~~~~~~lw~~~a~~e~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (521)
+|+..+-+.|+-.+.+..+ ..+++.+++..+..-|.. .-...+-+|--..+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~--~RdcLYyLAvg~ykl~---------------------- 91 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--RRECLYYLTIGCYKLG---------------------- 91 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCST--HHHHHHHHHHHHHTTT----------------------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccc--hhHHHHHHHHHHHHhh----------------------
Confidence 6788888888888888765 457788888888764421 1222222222233444
Q ss_pred hHHHHHHHHHHHHhcCChhhHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTA 205 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~ 205 (521)
+|++|+...+.+|+..|.+..+
T Consensus 92 ~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 92 EYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp CHHHHHHHHHHHHHTCCCCHHH
T ss_pred hHHHHHHHHHHHHhcCCCcHHH
Confidence 9999999999999999988643
No 257
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=44.12 E-value=1.3e+02 Score=31.05 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy8681 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLED 259 (521)
Q Consensus 184 ~~e~Ar~iy~~aL~~~P~~~~~~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~ 259 (521)
.+..|+..|.+|+...|.+- ..|+.++-+....|+.-.+. ..|-+++....-.+.++.++..++..
T Consensus 167 ~~~~A~~~Y~~A~~~~P~~G--~~~nqLavla~~~~~~l~a~--------y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 167 QTSQAESYYRHAAQLVPSNG--QPYNQLAILASSKGDHLTTI--------FYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp CHHHHHHHHHHHHHHCTTBS--HHHHHHHHHHHHTTCHHHHH--------HHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCC--chHHHHHHHHhcccccHHHH--------HHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 56899999999999999987 78999988888777765554 34888888765577888888777654
No 258
>2xpi_B Anaphase-promoting complex subunit HCN1 HCN1/CDC2 cyclosome/APC complex protein HCN1,...; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=39.03 E-value=15 Score=27.12 Aligned_cols=15 Identities=53% Similarity=0.798 Sum_probs=13.2
Q ss_pred CCCCcccCCHHHHHH
Q psy8681 4 KAPAEIQITAEQLLR 18 (521)
Q Consensus 4 ~~~~~~qit~~q~l~ 18 (521)
+.|+.|+||+|.|+.
T Consensus 5 R~PTaI~iT~EDI~a 19 (81)
T 2xpi_B 5 RNPTAIQITAEDVLA 19 (81)
T ss_dssp CCCCCCCCCHHHHHH
T ss_pred cCCceEEeCHHHHHH
Confidence 578999999999974
No 259
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=37.27 E-value=3.3e+02 Score=27.24 Aligned_cols=99 Identities=10% Similarity=0.162 Sum_probs=67.5
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHcCC--CCCC--cHHHHHHHHHHHHhcCChHHHHHHHHHHHhc----CCCHHH----HH
Q psy8681 282 FAELESLLGDMERARAIYELAISQP--RLDM--PELVWKAYIDFEVGQGERDKVRELHERLLER----TVHVKV----WM 349 (521)
Q Consensus 282 ~a~le~~~g~~e~Ar~ife~al~~~--~~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~----~~~~~v----wi 349 (521)
++.++...|++..|..++....... ..+. ...++..-+.++...+++.+|..++.++... .+++.+ ..
T Consensus 143 La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~ 222 (445)
T 4b4t_P 143 LVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYN 222 (445)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHH
Confidence 6788888999999999998876421 1111 1345666667788899999999999987532 234443 34
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHHHHhccchh
Q psy8681 350 NYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383 (521)
Q Consensus 350 ~ya~~e~~~g~~~~~~~AR~vferAl~~~~~~~~ 383 (521)
..+.+....++ +..|-..|..++......++
T Consensus 223 ~~~~~~~~e~~---y~~a~~~y~e~~~~~~~~~d 253 (445)
T 4b4t_P 223 LLVKISLHKRE---YLEVAQYLQEIYQTDAIKSD 253 (445)
T ss_dssp HHHHHHHHHCC---HHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhhh---HHHHHHHHHHHHhcccccCC
Confidence 45555666666 88888888888876554443
No 260
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=37.11 E-value=1.9e+02 Score=24.45 Aligned_cols=62 Identities=15% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8681 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275 (521)
Q Consensus 206 ~l~~~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~ 275 (521)
+.....++.....|..+.++++ +...+.-+|-++.+...++..+.+.|+..++.+++.+|..
T Consensus 92 e~vd~ALd~lv~~~KkDqLdki--------~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 92 EHVNKALDILVIQGKRDKLEEI--------GREILKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHH--------HHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHhHHHHH--------HHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
No 261
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.36 E-value=2.2e+02 Score=24.93 Aligned_cols=36 Identities=14% Similarity=-0.018 Sum_probs=22.5
Q ss_pred CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q psy8681 243 NPNNYD-AWFDYLRLLEDEGNADLIRETYERAIANIP 278 (521)
Q Consensus 243 ~P~~~~-~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P 278 (521)
+|.+-. .+..++.++.+.|+.++|...|.+.....|
T Consensus 109 d~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~ 145 (242)
T 3kae_A 109 DPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSF 145 (242)
T ss_dssp CTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcc
Confidence 454433 345666666777777777777777666544
No 262
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=29.67 E-value=1.5e+02 Score=30.39 Aligned_cols=62 Identities=18% Similarity=0.101 Sum_probs=48.3
Q ss_pred HHHHHHHHcCChhhHHHHHHhhHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc
Q psy8681 210 AYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279 (521)
Q Consensus 210 ~~~~~e~~~G~~~~a~~~i~~krr~~ye~al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~ 279 (521)
.++++.+-.+....|. ..|.+|+..+|.+...|..++.+....|+.-.|.-.|-|++....+
T Consensus 157 ~LGDL~RY~~~~~~A~--------~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~P 218 (497)
T 1ya0_A 157 HLGDIARYRNQTSQAE--------SYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218 (497)
T ss_dssp HHHHHHHHTTCHHHHH--------HHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC
T ss_pred HcccHHHHHHHHHHHH--------HHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCC
Confidence 3444444444444444 4499999999999999999999999999999999999999876443
No 263
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=28.01 E-value=2.5e+02 Score=32.13 Aligned_cols=98 Identities=8% Similarity=-0.098 Sum_probs=68.9
Q ss_pred HHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCchh-------------------------H---HHHHHHcC
Q psy8681 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------------------------F---AELESLLG 290 (521)
Q Consensus 239 al~~~P~~~~~W~~y~~~~~~~g~~~~Ar~~~erAl~~~P~~~-------------------------~---a~le~~~g 290 (521)
.+...|.++-.-+..|..+...|++++|...|++|-....... | +.+....|
T Consensus 834 l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~ 913 (1139)
T 4fhn_B 834 LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEES 913 (1139)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTS
T ss_pred HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcC
Confidence 3345677777778888999999999999999998743221100 2 34556778
Q ss_pred CHHHHHHHHHHHHcCCC-CCC--cHHHHHHHHHHHHhcCChHHHHHHHH
Q psy8681 291 DMERARAIYELAISQPR-LDM--PELVWKAYIDFEVGQGERDKVRELHE 336 (521)
Q Consensus 291 ~~e~Ar~ife~al~~~~-~~~--~~~lw~~yi~~e~~~g~~~~Ar~l~e 336 (521)
-++.+...-..|++..+ .+. ...+|..........|+|+.|-..+-
T Consensus 914 ~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 914 AYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp CCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred CHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 88888888888887322 221 23488888888888899988865553
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=27.60 E-value=2.6e+02 Score=28.87 Aligned_cols=152 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HcCCchh--------------HHHHHHHcCCHHH----------HHHHHHHH
Q psy8681 249 AWFDYLRLLEDEGNADLIRETYERAI--ANIPPTK--------------FAELESLLGDMER----------ARAIYELA 302 (521)
Q Consensus 249 ~W~~y~~~~~~~g~~~~Ar~~~erAl--~~~P~~~--------------~a~le~~~g~~e~----------Ar~ife~a 302 (521)
+++...-++..++.++++..+-...+ ....... |..+.+..|.... .|..+-.+
T Consensus 138 ~~lL~~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~ 217 (523)
T 4b4t_S 138 MHLLVQLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKF 217 (523)
T ss_dssp -----------------------------------------------------------------CHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHH
Q ss_pred Hc----CCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhcCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHH
Q psy8681 303 IS----QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH------VKVWMNYAQFEMSSGDEDSVSLARRVFE 372 (521)
Q Consensus 303 l~----~~~~~~~~~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~~------~~vwi~ya~~e~~~g~~~~~~~AR~vfe 372 (521)
+. .........+|+..+..+...+.++.|..+..++.-...+ +.....+|.+..-.++ +..|...|.
T Consensus 218 ~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~---Y~eA~~~L~ 294 (523)
T 4b4t_S 218 LKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLD---YSTANEYII 294 (523)
T ss_dssp HHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred HHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhcc---HHHHHHHHH
Q ss_pred HHHHHhccch-hhHHHHHHHHHHHHHHHHcCC
Q psy8681 373 RANQALKASS-EKEERVMLLEAWKEFEAQHGD 403 (521)
Q Consensus 373 rAl~~~~~~~-~~~~~~~l~~~~~~fE~~~G~ 403 (521)
.|+..+|.+. ....+..++..++-.+--.|+
T Consensus 295 ~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~ 326 (523)
T 4b4t_S 295 AAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGD 326 (523)
T ss_dssp HHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhCCcchhhhhHHHHHHHHHHhHHhhcCC
No 265
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=23.50 E-value=3.4e+02 Score=23.09 Aligned_cols=64 Identities=14% Similarity=0.043 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhcCC----CHHHHHHHHH-H-----HHHcCCchhhHHHHHHHHHHHHHhcc
Q psy8681 313 LVWKAYIDFEVGQGERDKVRELHERLLERTV----HVKVWMNYAQ-F-----EMSSGDEDSVSLARRVFERANQALKA 380 (521)
Q Consensus 313 ~lw~~yi~~e~~~g~~~~Ar~l~eral~~~~----~~~vwi~ya~-~-----e~~~g~~~~~~~AR~vferAl~~~~~ 380 (521)
..|..++.+. ..|.+=.|-++++.+-...+ ...+|..+++ + ....|| ..-|+.+|.+|+..+..
T Consensus 34 ~~~~~~i~lF-n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN---~~GA~~ll~~Al~~L~~ 107 (161)
T 2ijq_A 34 RAVVHGVRLY-NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFED---DDGMRSLFRTSLQYFRG 107 (161)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHH-hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHh
Confidence 3455555544 44999999999999887753 3456766666 2 334577 99999999999987654
Done!