AmiGO: BLAST Results


BLAST match view associations BLAST with AT5G45990 AT5G45990 AT5G45990	protein from Arabidopsis thaliana	9.4e-86
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Gallus gallus	2.2e-84
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-81
BLAST match view associations BLAST with crn crn crn crooked neck	protein from Drosophila melanogaster	5.3e-71
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Bos taurus	8.7e-67
BLAST match view associations BLAST with Crnkl1 Crnkl1 Crnkl1 Crn, crooked neck-like 1 (Drosophila)	protein from Mus musculus	1.8e-66
BLAST match view associations BLAST with Crnkl1 Crnkl1 Crnkl1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila)	gene from Rattus norvegicus	1.8e-66
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Crooked neck-like protein 1	protein from Homo sapiens	1.9e-66
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Crooked neck-like protein 1	protein from Homo sapiens	2.6e-66
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Canis lupus familiaris	7.7e-66
BLAST match view associations BLAST with M03F8.3 M03F8.3 M03F8.3	gene from Caenorhabditis elegans	2.9e-64
BLAST match view associations BLAST with crnkl1 crnkl1 crnkl1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila)	gene_product from Danio rerio	2.9e-64
BLAST match view associations BLAST with DDB_G0278819 DDB_G0278819 DDB_G0278819 HAT repeat-containing protein	gene from Dictyostelium discoideum	4.5e-47
BLAST match view associations BLAST with AT3G13210 AT3G13210 AT3G13210	protein from Arabidopsis thaliana	3.9e-46
BLAST match view associations BLAST with AT5G41770 AT5G41770 AT5G41770	protein from Arabidopsis thaliana	5.8e-42
BLAST match view associations BLAST with AT3G51110 AT3G51110 AT3G51110	protein from Arabidopsis thaliana	3.5e-38
BLAST match view associations BLAST with PFD0180c PFD0180c PFD0180c CGI-201 protein, short form	gene from Plasmodium falciparum	7.4e-25
BLAST match view associations BLAST with PFD0180c PFD0180c PFD0180c CGI-201 protein, short form	protein from Plasmodium falciparum 3D7	7.4e-25
BLAST match view associations BLAST with orf19.332 orf19.332 orf19.332	gene_product from Candida albicans	3.6e-22
BLAST match view associations BLAST with AT5G28740 AT5G28740 AT5G28740	protein from Arabidopsis thaliana	7.5e-10
BLAST match view associations BLAST with CLF1 CLF1 CLF1 Member of the NineTeen Complex (NTC)	gene from Saccharomyces cerevisiae	1.2e-09
BLAST match view associations BLAST with CG6197 CG6197 CG6197	protein from Drosophila melanogaster	1.5e-09
BLAST match view associations BLAST with C50F2.3 C50F2.3 C50F2.3	gene from Caenorhabditis elegans	2.4e-08
BLAST match view associations BLAST with C50F2.3 C50F2.3 C50F2.3 Protein C50F2.3	protein from Caenorhabditis elegans	2.4e-08
BLAST match view associations BLAST with xab2 xab2 xab2 XPA binding protein 2	gene_product from Danio rerio	1.8e-07
BLAST match view associations BLAST with LOC100157027 LOC100157027 LOC100157027 Uncharacterized protein	protein from Sus scrofa	7.6e-07
BLAST match view associations BLAST with LOC100157027 LOC100157027 LOC100157027 Uncharacterized protein	protein from Sus scrofa	7.7e-07
BLAST match view associations BLAST with RRP5 RRP5 RRP5 RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs	gene from Saccharomyces cerevisiae	1.5e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Bos taurus	2.3e-06
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Protein RRP5 homolog	protein from Bos taurus	2.7e-06
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Protein RRP5 homolog	protein from Bos taurus	2.7e-06
BLAST match view associations BLAST with Xab2 Xab2 Xab2 XPA binding protein 2	protein from Mus musculus	2.9e-06
BLAST match view associations BLAST with Xab2 Xab2 Xab2 XPA binding protein 2	gene from Rattus norvegicus	2.9e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Sus scrofa	4.8e-06
BLAST match view associations BLAST with let-716 let-716 let-716	gene from Caenorhabditis elegans	6.8e-06
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Uncharacterized protein	protein from Gallus gallus	1.4e-05
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-05
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Uncharacterized protein	protein from Sus scrofa	2.0e-05
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Pre-mRNA-processing factor 39	protein from Homo sapiens	2.0e-05
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Protein RRP5 homolog	protein from Homo sapiens	2.6e-05
BLAST match view associations BLAST with Prpf39 Prpf39 Prpf39 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)	gene from Rattus norvegicus	3.3e-05
BLAST match view associations BLAST with Pdcd11 Pdcd11 Pdcd11 programmed cell death 11	protein from Mus musculus	5.4e-05
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Pre-mRNA-splicing factor SYF1	protein from Homo sapiens	5.7e-05
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Pre-mRNA-splicing factor SYF1	protein from Homo sapiens	5.7e-05
BLAST match view associations BLAST with Pdcd11 Pdcd11 Pdcd11 programmed cell death 11	gene from Rattus norvegicus	7.0e-05
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Uncharacterized protein	protein from Canis lupus familiaris	7.9e-05
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Uncharacterized protein	protein from Gallus gallus	8.2e-05
BLAST match view associations BLAST with SART3 SART3 SART3 SART3 protein	protein from Homo sapiens	0.00029
BLAST match view associations BLAST with SART3 SART3 SART3 Squamous cell carcinoma antigen recognized by T-cells 3	protein from Homo sapiens	0.00054
BLAST match view associations BLAST with SART3 SART3 SART3 Squamous cell carcinoma antigen recognized by T-cells 3	protein from Homo sapiens	0.00086
Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  psy8681
        (521 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2161363 - symbol:AT5G45990 species:3702 "Arabi...   431  9.4e-86   3
UNIPROTKB|F1P3Q8 - symbol:CRNKL1 "Uncharacterized protein...   578  2.2e-84   3
UNIPROTKB|F1PYE9 - symbol:CRNKL1 "Uncharacterized protein...   548  3.1e-81   3
ASPGD|ASPL0000053069 - symbol:AN1259 species:162425 "Emer...   434  4.9e-80   3
FB|FBgn0000377 - symbol:crn "crooked neck" species:7227 "...   595  5.3e-71   2
UNIPROTKB|F1MZT2 - symbol:CRNKL1 "Uncharacterized protein...   560  8.7e-67   2
MGI|MGI:1914127 - symbol:Crnkl1 "Crn, crooked neck-like 1...   557  1.8e-66   2
RGD|620507 - symbol:Crnkl1 "crooked neck pre-mRNA splicin...   557  1.8e-66   2
UNIPROTKB|Q5JY65 - symbol:CRNKL1 "Crooked neck-like prote...   563  1.9e-66   2
UNIPROTKB|Q9BZJ0 - symbol:CRNKL1 "Crooked neck-like prote...   563  2.6e-66   2
UNIPROTKB|J9P5Z1 - symbol:CRNKL1 "Uncharacterized protein...   551  7.7e-66   2
WB|WBGene00019762 - symbol:M03F8.3 species:6239 "Caenorha...   539  2.9e-64   2
ZFIN|ZDB-GENE-040426-694 - symbol:crnkl1 "crooked neck pr...   537  2.9e-64   2
DICTYBASE|DDB_G0278819 - symbol:DDB_G0278819 "HAT repeat-...   357  4.5e-47   3
TAIR|locus:2089999 - symbol:AT3G13210 species:3702 "Arabi...   408  3.9e-46   2
POMBASE|SPBC31F10.11c - symbol:cwf4 "complexed with Cdc5 ...   384  3.6e-43   2
TAIR|locus:2152965 - symbol:AT5G41770 species:3702 "Arabi...   367  5.8e-42   2
TAIR|locus:2080853 - symbol:AT3G51110 species:3702 "Arabi...   330  3.5e-38   2
GENEDB_PFALCIPARUM|PFD0180c - symbol:PFD0180c "CGI-201 pr...   274  7.4e-25   2
UNIPROTKB|Q8I1Z2 - symbol:PFD0180c "CGI-201 protein, shor...   274  7.4e-25   2
CGD|CAL0004743 - symbol:orf19.332 species:5476 "Candida a...   175  3.6e-22   2
TAIR|locus:2184236 - symbol:AT5G28740 species:3702 "Arabi...   175  7.5e-10   1
SGD|S000004107 - symbol:CLF1 "Member of the NineTeen Comp...   178  1.2e-09   2
FB|FBgn0033859 - symbol:CG6197 species:7227 "Drosophila m...   172  1.5e-09   1
WB|WBGene00016837 - symbol:C50F2.3 species:6239 "Caenorha...   161  2.4e-08   1
UNIPROTKB|P91175 - symbol:C50F2.3 "Protein C50F2.3" speci...   161  2.4e-08   1
ZFIN|ZDB-GENE-040426-685 - symbol:xab2 "XPA binding prote...   153  1.8e-07   1
UNIPROTKB|F1S842 - symbol:LOC100157027 "Uncharacterized p...   151  7.6e-07   1
UNIPROTKB|F1S843 - symbol:LOC100157027 "Uncharacterized p...   151  7.7e-07   1
SGD|S000004842 - symbol:RRP5 "RNA binding protein involve...   148  1.5e-06   1
POMBASE|SPBC211.02c - symbol:cwf3 "complexed with Cdc5 pr...   144  1.6e-06   1
UNIPROTKB|F6RY07 - symbol:XAB2 "Uncharacterized protein" ...   143  2.3e-06   1
UNIPROTKB|A7MB10 - symbol:PDCD11 "Protein RRP5 homolog" s...   146  2.7e-06   1
UNIPROTKB|G5E5C4 - symbol:PDCD11 "Protein RRP5 homolog" s...   146  2.7e-06   1
MGI|MGI:1914689 - symbol:Xab2 "XPA binding protein 2" spe...   142  2.9e-06   1
RGD|621217 - symbol:Xab2 "XPA binding protein 2" species:...   142  2.9e-06   1
UNIPROTKB|J9PAI6 - symbol:XAB2 "Uncharacterized protein" ...   141  3.4e-06   1
UNIPROTKB|E2RPV4 - symbol:XAB2 "Uncharacterized protein" ...   141  3.7e-06   1
UNIPROTKB|F1SCH5 - symbol:XAB2 "Uncharacterized protein" ...   140  4.8e-06   1
WB|WBGene00002850 - symbol:let-716 species:6239 "Caenorha...   142  6.8e-06   1
UNIPROTKB|E1C8G8 - symbol:PRPF39 "Uncharacterized protein...   105  1.4e-05   2
UNIPROTKB|F1PV57 - symbol:PRPF39 "Uncharacterized protein...   104  2.0e-05   2
UNIPROTKB|F1SI15 - symbol:PRPF39 "Uncharacterized protein...   104  2.0e-05   2
UNIPROTKB|Q86UA1 - symbol:PRPF39 "Pre-mRNA-processing fac...   104  2.0e-05   2
ASPGD|ASPL0000052140 - symbol:AN0111 species:162425 "Emer...   134  2.2e-05   1
UNIPROTKB|Q14690 - symbol:PDCD11 "Protein RRP5 homolog" s...   137  2.6e-05   1
RGD|1308702 - symbol:Prpf39 "PRP39 pre-mRNA processing fa...   102  3.3e-05   2
MGI|MGI:1341788 - symbol:Pdcd11 "programmed cell death 11...   134  5.4e-05   1
UNIPROTKB|F5H315 - symbol:XAB2 "Pre-mRNA-splicing factor ...   138  5.7e-05   2
UNIPROTKB|Q9HCS7 - symbol:XAB2 "Pre-mRNA-splicing factor ...   138  5.7e-05   2
RGD|1304933 - symbol:Pdcd11 "programmed cell death 11" sp...   133  7.0e-05   1
UNIPROTKB|F1PLK8 - symbol:PDCD11 "Uncharacterized protein...   142  7.9e-05   2
UNIPROTKB|F1P3T9 - symbol:PDCD11 "Uncharacterized protein...   137  8.2e-05   2
UNIPROTKB|B7ZKM0 - symbol:SART3 "Squamous cell carcinoma ...    88  0.00029   3
UNIPROTKB|F8VVK9 - symbol:SART3 "Squamous cell carcinoma ...    95  0.00054   1
UNIPROTKB|F8VZM2 - symbol:SART3 "Squamous cell carcinoma ...   104  0.00086   1


>TAIR|locus:2161363 [details] [associations]
            symbol:AT5G45990 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
            InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
            GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0006397
            Gene3D:1.25.40.10 EMBL:AB006698 eggNOG:NOG327505
            HOGENOM:HOG000207972 IPI:IPI00521045 RefSeq:NP_199411.1
            UniGene:At.55396 ProteinModelPortal:Q9FNM3 SMR:Q9FNM3 PaxDb:Q9FNM3
            PRIDE:Q9FNM3 EnsemblPlants:AT5G45990.1 GeneID:834639
            KEGG:ath:AT5G45990 TAIR:At5g45990 InParanoid:Q9FNM3 OMA:SAFIRYA
            PhylomeDB:Q9FNM3 ProtClustDB:CLSN2684756 Genevestigator:Q9FNM3
            Uniprot:Q9FNM3
        Length = 673

 Score = 431 (156.8 bits), Expect = 9.4e-86, Sum P(3) = 9.4e-86
 Identities = 92/193 (47%), Positives = 125/193 (64%)

Query:   262 NADLIRETYERAIANIPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWK 316
             N D  R+ YER +   P        +AE E  L + ERARAI+ELAISQP LDMPEL+WK
Sbjct:   458 NIDRCRKLYERFLEWSPENCYAWRNYAEFEISLAETERARAIFELAISQPALDMPELLWK 517

Query:   317 AYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD--EDSVSLARRVFERA 374
              YIDFE+ +GE +K R L+ERLL+RT H KVW+++A+FE S+ +  ED +  AR +F+RA
Sbjct:   518 TYIDFEISEGEFEKTRALYERLLDRTKHCKVWISFAKFEASASEHKEDGIKSARVIFDRA 577

Query:   375 NQALKASSEK--EERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEE 432
             N   K ++ +  EER  LLE W   E   G+    + + SKLP++ KKR  T  ++G  E
Sbjct:   578 NTYYKDTTPELEEERATLLEDWLNMETGFGELGDVSVVQSKLPKKLKKRKMTSREDGSTE 637

Query:   433 GWEEVFDYIFPED 445
              +EE FDY+FPE+
Sbjct:   638 -YEEYFDYLFPEE 649

 Score = 363 (132.8 bits), Expect = 9.4e-86, Sum P(3) = 9.4e-86
 Identities = 87/179 (48%), Positives = 113/179 (63%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE---GQ----REKYG---DR- 167
             FE +   +  AR +YER V    + +     FI +AKFE    GQ    RE Y    D+ 
Sbjct:   188 FELRYNEIERARSIYERFVLCHPKVSA----FIRYAKFEMKRGGQVKLAREVYERAVDKL 243

Query:   168 AGIED---VIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA 222
             A  E+   + VS  +F+   +E ERAR IYK+ALDHI K R  E+YK +   EK+YGD+ 
Sbjct:   244 ANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYGDKE 303

Query:   223 GIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281
             GIED IV K++F+YE+EV+ NP NYD+WFDY+RL E  GN D IRE YERAIAN+PP +
Sbjct:   304 GIEDAIVGKKRFEYEDEVSKNPLNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAQ 362

 Score = 211 (79.3 bits), Expect = 8.0e-21, Sum P(2) = 8.0e-21
 Identities = 90/314 (28%), Positives = 151/314 (48%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FEE+   V  AR +Y+ A++   +   +E L+  F  FE+    +YGD+ GIED IV K+
Sbjct:   259 FEERCKEVERARFIYKFALDHIRKGRAEE-LYKKFVAFEK----QYGDKEGIEDAIVGKK 313

Query:   179 KFQYEEHERARVI-YKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237
             +F+YE+      + Y    D++  + +  +     I E  Y +RA I +V  ++ K  ++
Sbjct:   314 RFEYEDEVSKNPLNYDSWFDYVRLEES--VGNKDRIREI-Y-ERA-IANVPPAQEKRFWQ 368

Query:   238 EEVNSNPNNYDAWFDYLRLLEDEG-NADLIRETYERAIANIPPTKF---------AELES 287
               +      Y  W +Y    E E  + +  R+ Y   +  IP TKF         AE E 
Sbjct:   369 RYI------Y-LWINYALYEEIETKDVERTRDVYRECLKLIPHTKFSFAKIWLLAAEYEI 421

Query:   288 LLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-HV 345
                ++  AR I   AI + P++     ++K YI+ E+     D+ R+L+ER LE +  + 
Sbjct:   422 RQLNLTGARQILGNAIGKAPKVK----IFKKYIEMELKLVNIDRCRKLYERFLEWSPENC 477

Query:   346 KVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
               W NYA+FE+S  + +    AR +FE A    + + +  E  +L + + +FE   G+ E
Sbjct:   478 YAWRNYAEFEISLAETER---ARAIFELAIS--QPALDMPE--LLWKTYIDFEISEGEFE 530

Query:   406 SRAKLNSKLPRRAK 419
                 L  +L  R K
Sbjct:   531 KTRALYERLLDRTK 544

 Score = 165 (63.1 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 67/235 (28%), Positives = 110/235 (46%)

Query:   236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLG 290
             +E  +     N+  W  Y          +  R  ++R++  +P       K+  +E  LG
Sbjct:   101 WERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLG 160

Query:   291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350
             ++  AR I+E  ++       +  W  +I FE+   E ++ R ++ER +     V  ++ 
Sbjct:   161 NVTGARQIFERWMNW---SPDQKAWLCFIKFELRYNEIERARSIYERFVLCHPKVSAFIR 217

Query:   351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410
             YA+FEM  G +  V LAR V+ERA   L A+ E+ E  +L  ++ EFE +  + E RA+ 
Sbjct:   218 YAKFEMKRGGQ--VKLAREVYERAVDKL-ANDEEAE--ILFVSFAEFEERCKEVE-RARF 271

Query:   411 NSKLPR------RA----KKRV---KTYND-EGVEEG--WEEVFDYIFPEDEAAK 449
               K         RA    KK V   K Y D EG+E+    ++ F+Y   EDE +K
Sbjct:   272 IYKFALDHIRKGRAEELYKKFVAFEKQYGDKEGIEDAIVGKKRFEY---EDEVSK 323

 Score = 131 (51.2 bits), Expect = 9.1e-12, Sum P(2) = 9.1e-12
 Identities = 39/165 (23%), Positives = 78/165 (47%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + +RK ++E+++     N   W  Y +  E + +    R  +ERA+
Sbjct:    47 KQKITDSTELSDYRLRRRK-EFEDQIRRARWNIQVWVKYAKWEESQMDYARARSVWERAL 105

Query:   275 A-----NIPPTKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                   +    K+AE E     +  AR +++ +++  PR+D    +W+ YI  E   G  
Sbjct:   106 EGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRSVTLLPRVDQ---LWEKYIYMEEKLGNV 162

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER +  +   K W+ + +FE+   +   +  AR ++ER
Sbjct:   163 TGARQIFERWMNWSPDQKAWLCFIKFELRYNE---IERARSIYER 204

 Score = 118 (46.6 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
 Identities = 66/248 (26%), Positives = 105/248 (42%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGE-ENLDEKLFIAFAKFEE--GQR---EKYGDRAGIED 172
             FE +N FV+ AR V++R+V      + L EK      K     G R   E++ + +  + 
Sbjct:   121 FEMKNKFVNNARNVWDRSVTLLPRVDQLWEKYIYMEEKLGNVTGARQIFERWMNWSPDQK 180

Query:   173 VIVSKRKFQ--YEEHERARVIY-KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIV 229
               +   KF+  Y E ERAR IY ++ L H PK      +  Y   E K G +  +   + 
Sbjct:   181 AWLCFIKFELRYNEIERARSIYERFVLCH-PK---VSAFIRYAKFEMKRGGQVKLAREV- 235

Query:   230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI---RETYERAIANIPP------- 279
                   YE  V+   N+ +A   ++   E E     +   R  Y+ A+ +I         
Sbjct:   236 ------YERAVDKLANDEEAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELY 289

Query:   280 TKFAELESLLGDME--------RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331
              KF   E   GD E        + R  YE  +S+  L+     W  Y+  E   G +D++
Sbjct:   290 KKFVAFEKQYGDKEGIEDAIVGKKRFEYEDEVSKNPLNYDS--WFDYVRLEESVGNKDRI 347

Query:   332 RELHERLL 339
             RE++ER +
Sbjct:   348 REIYERAI 355

 Score = 110 (43.8 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
 Identities = 52/256 (20%), Positives = 117/256 (45%)

Query:   148 KLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK-----FQYEEHE-------RARVIYKYA 195
             ++++ +AK+EE Q +    R+  E  +  + +      +Y E E        AR ++  +
Sbjct:    79 QVWVKYAKWEESQMDYARARSVWERALEGEYRNHTLWVKYAEFEMKNKFVNNARNVWDRS 138

Query:   196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255
             +  +P  R  ++++ Y   E+K G+  G   +        +E  +N +P+   AW  +++
Sbjct:   139 VTLLP--RVDQLWEKYIYMEEKLGNVTGARQI--------FERWMNWSPDQ-KAWLCFIK 187

Query:   256 LLEDEGNADLIRETYERAIANIPPT----KFAELESLLG-DMERARAIYELAISQPRLDM 310
                     +  R  YER +   P      ++A+ E   G  ++ AR +YE A+ +   D 
Sbjct:   188 FELRYNEIERARSIYERFVLCHPKVSAFIRYAKFEMKRGGQVKLAREVYERAVDKLANDE 247

Query:   311 P-ELVWKAYIDFEVGQGERDKVRELHERLLE--RTVHVK-VWMNYAQFEMSSGDEDSVS- 365
               E+++ ++ +FE    E ++ R +++  L+  R    + ++  +  FE   GD++ +  
Sbjct:   248 EAEILFVSFAEFEERCKEVERARFIYKFALDHIRKGRAEELYKKFVAFEKQYGDKEGIED 307

Query:   366 --LARRVFERANQALK 379
               + ++ FE  ++  K
Sbjct:   308 AIVGKKRFEYEDEVSK 323

 Score = 108 (43.1 bits), Expect = 9.4e-86, Sum P(3) = 9.4e-86
 Identities = 25/44 (56%), Positives = 33/44 (75%)

Query:     1 VKNKAPAEIQITAEQLLREAKER-DLEIVPPVEEGWE--EVFDY 41
             VKNK PA +QITAEQ+LREA+ER + EI PP ++  +  E+ DY
Sbjct:    16 VKNKTPAPVQITAEQILREARERQEAEIRPPKQKITDSTELSDY 59

 Score = 84 (34.6 bits), Expect = 9.1e-07, Sum P(2) = 9.1e-07
 Identities = 40/151 (26%), Positives = 66/151 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE   G     R +YER ++         K++I+FAKFE    E        ED I S R
Sbjct:   522 FEISEGEFEKTRALYERLLD----RTKHCKVWISFAKFEASASEHK------EDGIKSAR 571

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK--RKFQY 236
                    +RA   YK     + ++R A + + +   E  +G+   +  V+ SK  +K + 
Sbjct:   572 VI----FDRANTYYKDTTPELEEER-ATLLEDWLNMETGFGELGDVS-VVQSKLPKKLKK 625

Query:   237 EEEVNSNPNN--YDAWFDYLRLLEDEGNADL 265
              +  +    +  Y+ +FDYL   E+ G  +L
Sbjct:   626 RKMTSREDGSTEYEEYFDYL-FPEESGTTNL 655

 Score = 45 (20.9 bits), Expect = 3.9e-79, Sum P(3) = 3.9e-79
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query:    18 REAKERDLEIVPPVEEGWEEVFDYIFPEDE 47
             R   +R + ++P V++ WE+   YI+ E++
Sbjct:   132 RNVWDRSVTLLPRVDQLWEK---YIYMEEK 158

 Score = 41 (19.5 bits), Expect = 2.8e-42, Sum P(2) = 2.8e-42
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query:    17 LREAKERDLEIVPPVEEG--WEEVFDYIF 43
             +RE  ER +  VPP +E   W+    YI+
Sbjct:   347 IREIYERAIANVPPAQEKRFWQR---YIY 372


>UNIPROTKB|F1P3Q8 [details] [associations]
            symbol:CRNKL1 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0000245 "spliceosomal complex assembly"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
            SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
            GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
            EMBL:AADN02044253 EMBL:AADN02044254 IPI:IPI00599254
            Ensembl:ENSGALT00000013732 Uniprot:F1P3Q8
        Length = 704

 Score = 578 (208.5 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
 Identities = 121/280 (43%), Positives = 182/280 (65%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+  ++ +P K  T A+I+  Y   E +       +++ +++R    
Sbjct:   401 ELEAKDPERTRQVYQACIELLPHKKFTFAKIWLLYAQFEIRQ------KNLPLARRALG- 453

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   454 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFAPENCTSWIKFAELETILGD 511

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             ++RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E +K R L+ RLL+RT HVKVW+++
Sbjct:   512 IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEEYEKTRNLYRRLLQRTQHVKVWISF 571

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+S+G E+S+S  R+++E AN+A++   EKEERVMLLE+WK FE + G D ++ ++ 
Sbjct:   572 AQFELSAGKEESLSKCRQIYEEANKAMRNCEEKEERVMLLESWKTFEEEFGTDSTKERIE 631

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   ++G + GWEE +DYIFPED A +PN
Sbjct:   632 KLMPEKIKKRRKLQAEDGSDAGWEEYYDYIFPEDTANQPN 671

 Score = 392 (143.0 bits), Expect = 1.1e-47, Sum P(2) = 1.1e-47
 Identities = 95/216 (43%), Positives = 128/216 (59%)

Query:   146 DEK-LFIAFA-KFEEGQREKYGDRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPK 201
             +EK  + A A K  E   E +G+    E + V+  KF+   +E ER RVIYKYALD IPK
Sbjct:   242 EEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRIPK 301

Query:   202 DRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG 261
                  ++K YTI EKK+GDR GIED+IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E + 
Sbjct:   302 QDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDA 361

Query:   262 NADLIRETYERAIANIPPTKFAELESLLGDMERARAIYE-LAISQPRLDMPELVWKAYID 320
             +A+ +RE YERAIAN+PP +          +    A+YE L    P  +    V++A I+
Sbjct:   362 DAETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEELEAKDP--ERTRQVYQACIE 419

Query:   321 FEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEM 356
                           H++        K+W+ YAQFE+
Sbjct:   420 LLP-----------HKKF----TFAKIWLLYAQFEI 440

 Score = 162 (62.1 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
 Identities = 30/44 (68%), Positives = 39/44 (88%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162
             FEE++ + + ARKVYERAVEFFGEE++DE L++AFAKFEE Q+E
Sbjct:   241 FEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKE 284

 Score = 150 (57.9 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
 Identities = 49/185 (26%), Positives = 87/185 (47%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:   113 IQRARSIYERALDVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 172

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  +R ++E  +  QP     E  W +YI+FE+   E D+ R ++  LL   
Sbjct:   173 YMEEMLGNVAGSRQVFERWMEWQPE----EQAWHSYINFELRYKEVDRARTIYIALLV-I 227

Query:   343 VH--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
             VH  VK W+ YA+FE         + AR+V+ERA +        +E + +  A+ +FE  
Sbjct:   228 VHPDVKNWIKYARFEEK---HCYFAHARKVYERAVEFF-GEEHMDEHLYV--AFAKFEEN 281

Query:   401 HGDDE 405
               + E
Sbjct:   282 QKEFE 286

 Score = 137 (53.3 bits), Expect = 2.2e-84, Sum P(3) = 2.2e-84
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:    34 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDVEELNDY 78

 Score = 124 (48.7 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 70/286 (24%), Positives = 118/286 (41%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSKR 178
             EE N +    RK +E  +    +       +I +A++EE  +E    R+  E  + V  R
Sbjct:    73 EELNDYKLRKRKTFEDNIR---KNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYR 129

Query:   179 K----FQYEEHE-------RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
                   +Y E E        AR I+  A+  +P  R  + +  YT  E+  G+ AG   V
Sbjct:   130 NVTLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGSRQV 187

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KF 282
                  ++Q EE+         AW  Y+         D  R  Y   +  + P      K+
Sbjct:   188 FERWMEWQPEEQ---------AWHSYINFELRYKEVDRARTIYIALLVIVHPDVKNWIKY 238

Query:   283 AELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341
             A  E        AR +YE A+       M E ++ A+  FE  Q E ++VR +++  L+R
Sbjct:   239 ARFEEKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDR 298

Query:   342 TVHV---KVWMNYAQFEMSSGDE---DSVSLARRVFERANQALKAS 381
                     ++ NY  FE   GD    + + +++R F+   + +KA+
Sbjct:   299 IPKQDAQNLFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE-VKAN 343

 Score = 119 (46.9 bits), Expect = 1.6e-13, Sum P(2) = 1.6e-13
 Identities = 41/154 (26%), Positives = 66/154 (42%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:    66 QQKITDVEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 124

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  N+    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   125 DVDYRNVTLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNV 181

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDED 362
                R++ ER +E     + W +Y  FE+   + D
Sbjct:   182 AGSRQVFERWMEWQPEEQAWHSYINFELRYKEVD 215

 Score = 79 (32.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 57/219 (26%), Positives = 94/219 (42%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA-KFEEGQREK--YGDRAGI--EDVI 174
             EE  G V+G+R+V+ER +E+  EE      +I F  +++E  R +  Y     I   DV 
Sbjct:   175 EEMLGNVAGSRQVFERWMEWQPEEQAWHS-YINFELRYKEVDRARTIYIALLVIVHPDVK 233

Query:   175 --VSKRKFQYEEH---ERARVIYKYALDHIPKDRTAE-IYKAYTIHEK--KYGDRAG-IE 225
               +   +F+ E+H     AR +Y+ A++   ++   E +Y A+   E+  K  +R   I 
Sbjct:   234 NWIKYARFE-EKHCYFAHARKVYERAVEFFGEEHMDEHLYVAFAKFEENQKEFERVRVIY 292

Query:   226 DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL 285
                + +   Q  + +  N   ++  F   R +ED       R  YE  +   P    A  
Sbjct:   293 KYALDRIPKQDAQNLFKNYTIFEKKFGDRRGIEDI-IVSKRRFQYEEEVKANPHNYDAWF 351

Query:   286 ESLL-----GDMERARAIYELAISQPRLDMPELVWKAYI 319
             + L       D E  R +YE AI+       +  WK YI
Sbjct:   352 DYLRLVESDADAETVREVYERAIANVPPIQEKRYWKRYI 390

 Score = 57 (25.1 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
 Identities = 57/229 (24%), Positives = 98/229 (42%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA-GIEDVIVSKRKFQYEEHERA 188
             RK+YE+ +EF   EN     +I FA+ E    +   DRA  I ++ +S+ +    E    
Sbjct:   482 RKLYEKFLEF-APENCTS--WIKFAELETILGDI--DRARAIYELAISQPRLDMPEVLWK 536

Query:   189 RVIYKYALDHIPKDRTAEIYKAY---TIHEK------KYGDRAGIEDVIVSKRKFQYEEE 239
               I  + ++    ++T  +Y+     T H K      ++   AG E+ + SK + Q  EE
Sbjct:   537 SYI-DFEIEQEEYEKTRNLYRRLLQRTQHVKVWISFAQFELSAGKEESL-SKCR-QIYEE 593

Query:   240 VNSNPNNYDAWFDYLRLLE------DEGNADLIRETYERAIAN-IPPTKFAELE--SLLG 290
              N    N +   + + LLE      +E   D  +E  E+ +   I   +  + E  S  G
Sbjct:   594 ANKAMRNCEEKEERVMLLESWKTFEEEFGTDSTKERIEKLMPEKIKKRRKLQAEDGSDAG 653

Query:   291 DMERARAIY-ELAISQPRLDMPEL--VWKAYIDFEVGQGERDKVRELHE 336
               E    I+ E   +QP L +  +  +WK     E+   E D  +++ E
Sbjct:   654 WEEYYDYIFPEDTANQPNLKLLAMAKLWKKQQQ-EIEAAEMDPDKDIDE 701

 Score = 45 (20.9 bits), Expect = 5.4e-59, Sum P(2) = 5.4e-59
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query:    15 QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             + +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   364 ETVREVYERAIANVPPIQEKRYWKRYIYLWINYALYEELEAKDP 407


>UNIPROTKB|F1PYE9 [details] [associations]
            symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
            SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
            OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
            Ensembl:ENSCAFT00000008599 Uniprot:F1PYE9
        Length = 797

 Score = 548 (198.0 bits), Expect = 3.1e-81, Sum P(3) = 3.1e-81
 Identities = 117/278 (42%), Positives = 174/278 (62%)

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
             + + ++ ER R +Y+ +L+ IP  +     K + ++ + +  R     V VS        
Sbjct:   494 ELEAKDPERTRQVYQASLELIPHKKFT-FAKMWLLYAQ-FEIRQKNLPVSVSL----LGT 547

Query:   239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDME 293
              +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD+E
Sbjct:   548 SIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGDIE 606

Query:   294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353
             RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++AQ
Sbjct:   607 RARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQ 666

Query:   354 FEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK 413
             FE+SS  E S++  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++  
Sbjct:   667 FELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVDKL 726

Query:   414 LPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
             +P + KKR K   D+G + GWEE +DYIFPED A +PN
Sbjct:   727 MPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 764

 Score = 391 (142.7 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
 Identities = 78/133 (58%), Positives = 96/133 (72%)

Query:   150 FIAFA-KFEEGQREKYGDRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAE 206
             + A A K  E   E +GD    E + V+  KF+   +E ER RVIYKYALD I K    E
Sbjct:   340 YFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQE 399

Query:   207 IYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLI 266
             ++K YTI EKK+GDR GIED+IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  A+ +
Sbjct:   400 LFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETV 459

Query:   267 RETYERAIANIPP 279
             RE YERAIAN+PP
Sbjct:   460 REVYERAIANVPP 472

 Score = 168 (64.2 bits), Expect = 3.1e-81, Sum P(3) = 3.1e-81
 Identities = 30/44 (68%), Positives = 40/44 (90%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQRE 162
             FEE++G+ + ARKVYERAVEFFG+E++DE L++AFAKFEE Q+E
Sbjct:   334 FEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKE 377

 Score = 137 (53.3 bits), Expect = 3.1e-81, Sum P(3) = 3.1e-81
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:   123 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 167

 Score = 129 (50.5 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 58/224 (25%), Positives = 95/224 (42%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:   155 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 213

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   214 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNI 270

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERV 388
                R++ ER +E     + W +Y  FE+   + D    AR ++   N         + + 
Sbjct:   271 AGARQVFERWMEWQPEEQAWHSYINFELRYKEVDR---ARTIYYFLNSPELVLVHPDVKN 327

Query:   389 MLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEE 432
              +  A   FE +HG   + A+   K+  RA   V+ + DE ++E
Sbjct:   328 WIKYA--RFEEKHGYF-AHAR---KVYERA---VEFFGDEHMDE 362

 Score = 116 (45.9 bits), Expect = 4.6e-13, Sum P(2) = 4.6e-13
 Identities = 78/313 (24%), Positives = 141/313 (45%)

Query:   142 EENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSKRKFQYEEHERARVIYKYALDHIP 200
             EE L++        FE+  R+   +R  I + I  ++ +   +E +RAR IY+ ALD   
Sbjct:   161 EEELNDYKLRKRKTFEDNIRK---NRTVISNWIKYAQWEESLKEIQRARSIYERALD--- 214

Query:   201 KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260
              D     Y+  T+   KY +   +++  V+  +  ++  + + P     W+ Y  + E  
Sbjct:   215 VD-----YRNITLW-LKYAEME-MKNRQVNHARNIWDRAITTLPRVNQFWYKYTYMEEML 267

Query:   261 GNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYELAISQPRLDM--PELV 314
             GN    R+ +ER +   P  +    +   E    +++RAR IY   ++ P L +  P++ 
Sbjct:   268 GNIAGARQVFERWMEWQPEEQAWHSYINFELRYKEVDRARTIYYF-LNSPELVLVHPDVK 326

Query:   315 -WKAYIDFEVGQGERDKVRELHERLLE--RTVHVK--VWMNYAQFEMSSGDEDSVSLARR 369
              W  Y  FE   G     R+++ER +E     H+   +++ +A+FE +  + + V    R
Sbjct:   327 NWIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERV----R 382

Query:   370 VFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN-SKLPRRAKKRVKTYNDE 428
             V  +   AL   S K+E   L + +  FE + GD      +  SK   + ++ VK  N  
Sbjct:   383 VIYK--YALDRIS-KQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEEVKA-NPH 438

Query:   429 GVEEGWEEVFDYI 441
               +  W   FDY+
Sbjct:   439 NYD-AW---FDYL 447

 Score = 90 (36.7 bits), Expect = 1.0e-23, Sum P(3) = 1.0e-23
 Identities = 40/202 (19%), Positives = 81/202 (40%)

Query:   184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243
             E E  R +Y+ A+ ++P  +    +K Y      Y     +E     + +  Y+  +   
Sbjct:   455 EAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDPERTRQVYQASLELI 514

Query:   244 PNNY----DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERA 295
             P+        W  Y +    + N  +       +I   P  K    + ELE  L + +R 
Sbjct:   515 PHKKFTFAKMWLLYAQFEIRQKNLPVSVSLLGTSIGKCPKNKLFKGYIELELQLREFDRC 574

Query:   296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNYA 352
             R +YE  +     +     W  + + E   G+ ++ R ++E  + +    +   +W +Y 
Sbjct:   575 RKLYEKFLEFGPENCTS--WIKFAELETILGDIERARAIYELAISQPRLDMPEVLWKSYI 632

Query:   353 QFEMSSGD-EDSVSLARRVFER 373
              FE+   + E + +L RR+ +R
Sbjct:   633 DFEIEQEETERTRNLYRRLLQR 654

 Score = 61 (26.5 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 41/141 (29%), Positives = 62/141 (43%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEE--GQREKYGDRAGIEDVIVSKRKFQYEEHER 187
             RK+YE+ +EF G EN     +I FA+ E   G  E+   RA I ++ +S+ +    E   
Sbjct:   575 RKLYEKFLEF-GPENCTS--WIKFAELETILGDIERA--RA-IYELAISQPRLDMPEVLW 628

Query:   188 ARVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIEDVIVSKRKF-------QYE 237
                I  + ++    +RT  +Y+     T H K +   A  E   +S RK        Q  
Sbjct:   629 KSYI-DFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFE---LSSRKEGSLAKCRQIY 684

Query:   238 EEVNSNPNNYDAWFDYLRLLE 258
             EE N    N +   + L LLE
Sbjct:   685 EEANKTMRNCEEKEERLMLLE 705

 Score = 51 (23.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
 Identities = 32/147 (21%), Positives = 64/147 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE +       R +Y R ++         K++I+FA+FE   R K G  A    +     
Sbjct:   634 FEIEQEETERTRNLYRRLLQ----RTQHVKVWISFAQFELSSR-KEGSLAKCRQIYEEAN 688

Query:   179 KFQY---EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQ 235
             K      E+ ER  ++  +        R+ E  +  T+ +K+  D+  + + +  +RK Q
Sbjct:   689 KTMRNCEEKEERLMLLESW--------RSFED-EFGTVSDKERVDKL-MPEKVKKRRKVQ 738

Query:   236 YEEEVNSNPNNYDAWFDYLRLLEDEGN 262
              ++  ++    ++ ++DY+   ED  N
Sbjct:   739 ADDGSDAG---WEEYYDYI-FPEDAAN 761

 Score = 47 (21.6 bits), Expect = 1.2e-55, Sum P(2) = 1.2e-55
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE + +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   450 VESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDP 500


>ASPGD|ASPL0000053069 [details] [associations]
            symbol:AN1259 species:162425 "Emericella nidulans"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005681
            "spliceosomal complex" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0008380
            EMBL:BN001308 GO:GO:0006397 GO:GO:0005681 EMBL:AACD01000017
            GO:GO:0007049 Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869
            RefSeq:XP_658863.1 STRING:Q5BDX1 GeneID:2877035 KEGG:ani:AN1259.2
            HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 Uniprot:Q5BDX1
        Length = 673

 Score = 434 (157.8 bits), Expect = 4.9e-80, Sum P(3) = 4.9e-80
 Identities = 99/203 (48%), Positives = 126/203 (62%)

Query:   267 RETYERAIANIPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321
             R  YE+ I   P       ++AELE  L D ERARAIYEL I QP LDMPELVWKAYIDF
Sbjct:   456 RTLYEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGIDQPTLDMPELVWKAYIDF 515

Query:   322 EVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDS--------VS-----LAR 368
             E  +GE ++ R+L+ERLL++T HVKVW+NYA+FE++  DE+         +S      AR
Sbjct:   516 EDDEGEYERERQLYERLLQKTDHVKVWINYARFEINVPDEEEEEEEEERPISDEAKRRAR 575

Query:   369 RVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDE 428
              VFERA++  K    KEERV LL AW+ FE  HG  E   K+  ++PRR KKR K  +D 
Sbjct:   576 AVFERAHRVFKEKELKEERVELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRRKLDDDR 635

Query:   429 GVEEGWEEVFDYIFPEDEAAKPN 451
                  +EE  DY+FP D+ +  N
Sbjct:   636 -----YEEYMDYVFPADDQSAAN 653

 Score = 322 (118.4 bits), Expect = 4.9e-80, Sum P(3) = 4.9e-80
 Identities = 70/168 (41%), Positives = 109/168 (64%)

Query:   129 ARKVYERAVEFFGEENLDEKLFIAFAKFEE--GQ----REKYG---DRAGI----EDVIV 175
             AR +++R    F   + + + +I +A+FEE  G     RE YG   +  G     E + +
Sbjct:   192 ARAIFQR----FTIVHPEPRNWIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLFI 247

Query:   176 SKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRK 233
             +  +F+   +E+ERAR IYKYALD +P+ ++  ++KAYT  EK++GDR G+E+VI++KR+
Sbjct:   248 AYARFETKLKEYERARAIYKYALDRLPRSKSITLHKAYTTFEKQFGDREGVENVILAKRR 307

Query:   234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281
              QYEE++  N  NYD WFD+ RL E  G+ + +R+ YERAIA IPP++
Sbjct:   308 VQYEEQLKENLRNYDVWFDFARLEEQSGDPERVRDVYERAIAQIPPSQ 355

 Score = 208 (78.3 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 94/339 (27%), Positives = 148/339 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFF--GEENLDEK----LFIAFAKFEEGQREKYGDRAG---I 170
             EEQ+G     R VYERA+      +E    +    L+I +A +EE + +   DRA     
Sbjct:   331 EEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDI-DRARQVYT 389

Query:   171 EDV-IVSKRKF----------QYEEHE----RARVIYKYALDHIPKDRTAEIYKAYTIHE 215
             E + ++  +KF          Q+E  +     AR     A+   PKD+   +++ Y   E
Sbjct:   390 ECLKLIPHKKFTFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDK---LFRGYIDLE 446

Query:   216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI- 274
             ++  +        V  R   YE+++  NP+N  +W  Y  L     + +  R  YE  I 
Sbjct:   447 RQLFE-------FVRCRTL-YEKQIEWNPSNSQSWIQYAELERGLDDTERARAIYELGID 498

Query:   275 ---ANIPPT---KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328
                 ++P      + + E   G+ ER R +YE  +   + D  + VW  Y  FE+   + 
Sbjct:   499 QPTLDMPELVWKAYIDFEDDEGEYERERQLYERLLQ--KTDHVK-VWINYARFEINVPDE 555

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERV 388
             ++  E  ER +                     +++   AR VFERA++  K    KEERV
Sbjct:   556 EEEEEEEERPIS--------------------DEAKRRARAVFERAHRVFKEKELKEERV 595

Query:   389 MLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYND 427
              LL AW+ FE  HG  E   K+  ++PRR KKR K  +D
Sbjct:   596 ELLNAWRAFEHTHGSPEDIDKIEKQMPRRVKKRRKLDDD 634

 Score = 138 (53.6 bits), Expect = 8.7e-11, Sum P(2) = 8.7e-11
 Identities = 73/287 (25%), Positives = 126/287 (43%)

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTA-EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237
             + + +E  RAR I++ ALD    D T+  ++  Y   E +  +R       ++  +   +
Sbjct:    82 ELEQKEFRRARSIFERALD---VDSTSVPLWIRYI--ESEMRNRN------INHARNLLD 130

Query:   238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP----TKFAELESLLGDME 293
               V   P     W+ Y+ + E  GN    R+ +ER ++  P     + + +LE    + E
Sbjct:   131 RAVTILPRVDKLWYKYVYMEETLGNIPGTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFE 190

Query:   294 RARAIYE-LAISQPRLDMPELVWKAYIDFEVGQGERDKVRELH----ERLLERTVHVKVW 348
             RARAI++   I  P    P   W  +  FE   G  D VRE++    E L E  +  K++
Sbjct:   191 RARAIFQRFTIVHPE---PRN-WIKWARFEEEYGTSDLVREVYGLAVETLGEDFMDEKLF 246

Query:   349 MNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES-- 406
             + YA+FE    + +    AR +++ A   L  S      + L +A+  FE Q GD E   
Sbjct:   247 IAYARFETKLKEYER---ARAIYKYALDRLPRSKS----ITLHKAYTTFEKQFGDREGVE 299

Query:   407 ---RAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKP 450
                 AK   +   + K+ ++ Y      + W   FD+   E+++  P
Sbjct:   300 NVILAKRRVQYEEQLKENLRNY------DVW---FDFARLEEQSGDP 337

 Score = 137 (53.3 bits), Expect = 1.7e-17, Sum P(3) = 1.7e-17
 Identities = 48/138 (34%), Positives = 68/138 (49%)

Query:   282 FAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVREL------ 334
             +A  E+ L + ERARAIY+ A+ + PR     L  KAY  FE   G+R+ V  +      
Sbjct:   249 YARFETKLKEYERARAIYKYALDRLPRSKSITL-HKAYTTFEKQFGDREGVENVILAKRR 307

Query:   335 ---HERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE--RVM 389
                 E+L E   +  VW ++A+ E  SGD + V   R V+ERA   +  S EK    R +
Sbjct:   308 VQYEEQLKENLRNYDVWFDFARLEEQSGDPERV---RDVYERAIAQIPPSQEKRHWRRYI 364

Query:   390 LL----EAWKEFEAQHGD 403
              L      W+E EA+  D
Sbjct:   365 YLWIFYALWEEMEAKDID 382

 Score = 119 (46.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 67/307 (21%), Positives = 123/307 (40%)

Query:   131 KVYERAVEFFGEENLDEKLFIAFAK--FEEGQREKYGDRAGIEDVIVSKRKFQYEEHERA 188
             K Y    + FG+    E + +A  +  +EE  +E   +     D   ++ + Q  + ER 
Sbjct:   283 KAYTTFEKQFGDREGVENVILAKRRVQYEEQLKENLRNYDVWFDF--ARLEEQSGDPERV 340

Query:   189 RVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY- 247
             R +Y+ A+  IP  +    ++ Y      Y     +E   + + +  Y E +   P+   
Sbjct:   341 RDVYERAIAQIPPSQEKRHWRRYIYLWIFYALWEEMEAKDIDRARQVYTECLKLIPHKKF 400

Query:   248 ---DAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERARAIYE 300
                  W    +    + N    R+T  +AI   P  K    + +LE  L +  R R +YE
Sbjct:   401 TFAKVWLMKAQFEVRQLNLQAARKTLGQAIGMCPKDKLFRGYIDLERQLFEFVRCRTLYE 460

Query:   301 LAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER-TVHVK--VWMNYAQFEMS 357
               I     +     W  Y + E G  + ++ R ++E  +++ T+ +   VW  Y  FE  
Sbjct:   461 KQIEWNPSNSQS--WIQYAELERGLDDTERARAIYELGIDQPTLDMPELVWKAYIDFE-- 516

Query:   358 SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK-LPR 416
               DE      R+++ER  Q       K + V +   +  FE    D+E   +   + +  
Sbjct:   517 -DDEGEYERERQLYERLLQ-------KTDHVKVWINYARFEINVPDEEEEEEEEERPISD 568

Query:   417 RAKKRVK 423
              AK+R +
Sbjct:   569 EAKRRAR 575

 Score = 107 (42.7 bits), Expect = 1.6e-57, Sum P(3) = 1.6e-57
 Identities = 25/50 (50%), Positives = 32/50 (64%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168
             FEE+ G     R+VY  AVE  GE+ +DEKLFIA+A+FE   +E    RA
Sbjct:   215 FEEEYGTSDLVREVYGLAVETLGEDFMDEKLFIAYARFETKLKEYERARA 264

 Score = 101 (40.6 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
 Identities = 43/196 (21%), Positives = 81/196 (41%)

Query:   216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI- 274
             +++ D   + +    KRK ++E+ V  N  N + W  Y     ++      R  +ERA+ 
Sbjct:    42 QRFADLEELHEYQGRKRK-EFEDYVRRNRINMNNWMRYAAWELEQKEFRRARSIFERALD 100

Query:   275 ---ANIPP-TKFAELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERD 329
                 ++P   ++ E E    ++  AR + + A++  PR+D    +W  Y+  E   G   
Sbjct:   101 VDSTSVPLWIRYIESEMRNRNINHARNLLDRAVTILPRVDK---LWYKYVYMEETLGNIP 157

Query:   330 KVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVM 389
               R++ ER +        W  Y + E    + +    AR +F+R           E R  
Sbjct:   158 GTRQVFERWMSWEPDEGAWSAYIKLEKRYNEFER---ARAIFQRFTIV-----HPEPRNW 209

Query:   390 LLEAWKEFEAQHGDDE 405
             +   W  FE ++G  +
Sbjct:   210 I--KWARFEEEYGTSD 223

 Score = 91 (37.1 bits), Expect = 4.9e-80, Sum P(3) = 4.9e-80
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query:     1 VKNKAPAEIQITAEQLLREAKER-DLEIVPPVEE--GWEEVFDY 41
             VKNKAPA +QI+AEQLLREA +R +  +  P +     EE+ +Y
Sbjct:    10 VKNKAPAPVQISAEQLLREAVDRQEPSLQAPTQRFADLEELHEY 53

 Score = 85 (35.0 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
 Identities = 35/151 (23%), Positives = 73/151 (48%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE----EGQREKYGDRAGIEDVI 174
             FE+  G     R++YER ++    +++  K++I +A+FE    + + E+  +   I D  
Sbjct:   515 FEDDEGEYERERQLYERLLQ--KTDHV--KVWINYARFEINVPDEEEEEEEEERPISDE- 569

Query:   175 VSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF 234
              +KR+ +    ERA  ++K   +   K+   E+  A+   E  +G    I D I  +   
Sbjct:   570 -AKRRAR-AVFERAHRVFK---EKELKEERVELLNAWRAFEHTHGSPEDI-DKIEKQMPR 623

Query:   235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADL 265
             + ++    + + Y+ + DY+   +D+  A+L
Sbjct:   624 RVKKRRKLDDDRYEEYMDYVFPADDQSAANL 654

 Score = 38 (18.4 bits), Expect = 2.6e-42, Sum P(2) = 2.6e-42
 Identities = 12/42 (28%), Positives = 21/42 (50%)

Query:     5 APAEIQITAEQLLREAKERDLEIVPPVEEG--WEE-VFDYIF 43
             A  E Q    + +R+  ER +  +PP +E   W   ++ +IF
Sbjct:   328 ARLEEQSGDPERVRDVYERAIAQIPPSQEKRHWRRYIYLWIF 369


>FB|FBgn0000377 [details] [associations]
            symbol:crn "crooked neck" species:7227 "Drosophila
            melanogaster" [GO:0007443 "Malpighian tubule morphogenesis"
            evidence=IMP] [GO:0007417 "central nervous system development"
            evidence=NAS] [GO:0005634 "nucleus" evidence=IC;NAS] [GO:0007422
            "peripheral nervous system development" evidence=NAS] [GO:0048663
            "neuron fate commitment" evidence=NAS] [GO:0007405 "neuroblast
            proliferation" evidence=NAS] [GO:0005681 "spliceosomal complex"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC;ISS] [GO:0016607 "nuclear speck" evidence=IDA]
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0007438 "oenocyte development"
            evidence=IMP] [GO:0008347 "glial cell migration" evidence=IMP]
            [GO:0008366 "axon ensheathment" evidence=IMP] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0051298 "centrosome
            duplication" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
            [GO:0072686 "mitotic spindle" evidence=IDA] [GO:0022008
            "neurogenesis" evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 GO:GO:0005813
            GO:GO:0051298 GO:GO:0016607 EMBL:AE014298 GO:GO:0007438
            Gene3D:1.25.40.10 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
            GO:GO:0008347 GO:GO:0072686 GO:GO:0007443 GO:GO:0000381
            GO:GO:0008366 eggNOG:NOG327505 KO:K12869 OMA:KFTFAKI
            GeneTree:ENSGT00550000074931 EMBL:X58374 EMBL:AL009195
            EMBL:AY051666 PIR:T13427 RefSeq:NP_477118.1 UniGene:Dm.3140
            ProteinModelPortal:P17886 SMR:P17886 DIP:DIP-17429N IntAct:P17886
            MINT:MINT-282072 STRING:P17886 PaxDb:P17886
            EnsemblMetazoa:FBtr0070418 GeneID:31208 KEGG:dme:Dmel_CG3193
            CTD:12935 FlyBase:FBgn0000377 HOGENOM:HOG000264173
            InParanoid:P17886 OrthoDB:EOG4J9KDW PhylomeDB:P17886
            GenomeRNAi:31208 NextBio:772455 Bgee:P17886 GermOnline:CG3193
            Uniprot:P17886
        Length = 702

 Score = 595 (214.5 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 135/284 (47%), Positives = 182/284 (64%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + E+ ER R IYK  L+ IP K  T ++++  Y   E +       +++  +++    
Sbjct:   379 ELEAEDAERTRQIYKTCLELIPHKQFTFSKLWLLYAQFEIR------CKELQRARKALGL 432

Query:   237 EEEVNSNPNNYDAWFDY-LRLLEDEGNADLIRETYERAIAN-IPPTKFAELESLLGDMER 294
                +      +  + D  ++L E E    L  +  E    N +   KFAELE+LLGD +R
Sbjct:   433 AIGMCPRDKLFRGYIDLEIQLREFERCRMLYEKFLEFGPENCVTWMKFAELENLLGDTDR 492

Query:   295 ARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQF 354
             ARAI+ELA+ QPRLDMPEL+WKAYIDFEV  GE +  R+L+ERLLERT HVKVWM++A+F
Sbjct:   493 ARAIFELAVQQPRLDMPELLWKAYIDFEVALGETELARQLYERLLERTQHVKVWMSFAKF 552

Query:   355 EM--SSGD-----EDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESR 407
             EM  S GD     E +V LARR++ERAN+ L+   +KE RV+LLEAW++FE    D +  
Sbjct:   553 EMGLSHGDSGPDAELNVQLARRIYERANEMLRQLGDKESRVLLLEAWRDFERDASDSQEM 612

Query:   408 AKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
              K+  K+PRR KKR K  +D GVEEGWEEVFDYIFPEDE A+PN
Sbjct:   613 QKVMDKMPRRIKKRQKIVSDNGVEEGWEEVFDYIFPEDEMARPN 656

 Score = 469 (170.2 bits), Expect = 3.8e-57, Sum P(2) = 3.8e-57
 Identities = 103/184 (55%), Positives = 130/184 (70%)

Query:   111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE------GQR--- 161
             TY   EL ++E    +  AR++YER V      + D K +I FA+FEE      G R   
Sbjct:   182 TYVNFELRYKE----IDRAREIYERFVYV----HPDVKNWIKFARFEESHGFIHGSRRVF 233

Query:   162 ----EKYGDRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHE 215
                 E +GD    E + ++  +F+   +EH+RAR+IYKYALDH+PKDRT E++KAYT HE
Sbjct:   234 ERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHE 293

Query:   216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA 275
             KKYGDRAGIEDVIVSKRK+QYE+EV +NP NYDAWFDYLRL+E EG+ D IRETYERAI+
Sbjct:   294 KKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQIRETYERAIS 353

Query:   276 NIPP 279
             N+PP
Sbjct:   354 NVPP 357

 Score = 181 (68.8 bits), Expect = 7.4e-21, Sum P(2) = 7.4e-21
 Identities = 66/243 (27%), Positives = 113/243 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  +E  +++   N   W  Y  +       +  R  ++RA+  +P       K+ 
Sbjct:    92 IQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQFWYKYT 151

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +L ++  AR ++E  +  QP     E  W+ Y++FE+   E D+ RE++ER +   
Sbjct:   152 YMEEMLENVAGARQVFERWMEWQPE----EQAWQTYVNFELRYKEIDRAREIYERFVYVH 207

Query:   343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402
               VK W+ +A+FE S G    +  +RRVFERA +        EER+ +  A+  FE   G
Sbjct:   208 PDVKNWIKFARFEESHG---FIHGSRRVFERAVEFF-GDDYIEERLFI--AFARFE--EG 259

Query:   403 DDE-SRAKLNSK-----LPR-RAKKRVKTYNDE----GVEEGWEEVF----DYIFPEDEA 447
               E  RA++  K     LP+ R ++  K Y       G   G E+V      Y + ++ A
Sbjct:   260 QKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVA 319

Query:   448 AKP 450
             A P
Sbjct:   320 ANP 322

 Score = 142 (55.0 bits), Expect = 5.3e-71, Sum P(2) = 5.3e-71
 Identities = 28/30 (93%), Positives = 30/30 (100%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPP 30
             VKNKAPAE+QITAEQLLREAKERDLEI+PP
Sbjct:    13 VKNKAPAEVQITAEQLLREAKERDLEILPP 42

 Score = 132 (51.5 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
 Identities = 70/323 (21%), Positives = 133/323 (41%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE-EGQREKYGDRAGIEDVIVSK 177
             +EEQ   +  AR ++ERA++    E+ +  L++ +A+ E + ++  +        V +  
Sbjct:    85 WEEQQQEIQRARSIWERALD---NEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMP 141

Query:   178 R------KFQYEEH--ER---ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED 226
             R      K+ Y E   E    AR +++  ++  P+++  + Y  + +  K+  DRA    
Sbjct:   142 RVNQFWYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEI-DRA---- 196

Query:   227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT------ 280
                  R+  YE  V  +P+  + W  + R  E  G     R  +ERA+            
Sbjct:   197 -----REI-YERFVYVHPDVKN-WIKFARFEESHGFIHGSRRVFERAVEFFGDDYIEERL 249

Query:   281 --KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL---- 334
                FA  E    + +RAR IY+ A+     D  + ++KAY   E   G+R  + ++    
Sbjct:   250 FIAFARFEEGQKEHDRARIIYKYALDHLPKDRTQELFKAYTKHEKKYGDRAGIEDVIVSK 309

Query:   335 -----HERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVM 389
                   + +     +   W +Y +   + GD D +   R  +ERA   +  ++EK     
Sbjct:   310 RKYQYEQEVAANPTNYDAWFDYLRLIEAEGDRDQI---RETYERAISNVPPANEKNFWRR 366

Query:   390 LLEAWKEF---EAQHGDDESRAK 409
              +  W  +   E    +D  R +
Sbjct:   367 YIYLWINYALYEELEAEDAERTR 389

 Score = 126 (49.4 bits), Expect = 0.00013, P = 0.00013
 Identities = 27/47 (57%), Positives = 34/47 (72%)

Query:     8 EIQITAEQLLREAKERDLEIVPP--VEEGWEEVFDYIFPEDEAAKPN 52
             E+Q   +++ R  K+R  +IV    VEEGWEEVFDYIFPEDE A+PN
Sbjct:   611 EMQKVMDKMPRRIKKRQ-KIVSDNGVEEGWEEVFDYIFPEDEMARPN 656

 Score = 124 (48.7 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 46/179 (25%), Positives = 75/179 (41%)

Query:   201 KDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260
             K+R  EI       ++K  D A + D    KRK  +E+ +  N      W  Y +  E +
Sbjct:    33 KERDLEILPPPP--KQKISDPAELADYQQRKRK-TFEDNLRKNRMVVSHWIKYAQWEEQQ 89

Query:   261 GNADLIRETYERAIANIPPT-----KFAELESLLGDMERARAIYELAIS-QPRLDMPELV 314
                   R  +ERA+ N         K+AE+E     +  AR +++ A++  PR++     
Sbjct:    90 QEIQRARSIWERALDNEHRNVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVNQ---F 146

Query:   315 WKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             W  Y   E         R++ ER +E     + W  Y  FE+   + D    AR ++ER
Sbjct:   147 WYKYTYMEEMLENVAGARQVFERWMEWQPEEQAWQTYVNFELRYKEIDR---AREIYER 202

 Score = 97 (39.2 bits), Expect = 8.5e-12, Sum P(2) = 8.5e-12
 Identities = 58/253 (22%), Positives = 107/253 (42%)

Query:   109 DTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA 168
             + T  ++    E +N  V+ AR +++RAV      N   + +  +   EE      G R 
Sbjct:   109 NVTLWLKYAEMEMKNKQVNHARNLWDRAVTIMPRVN---QFWYKYTYMEEMLENVAGARQ 165

Query:   169 GIEDVIVSKRKFQYEEHERARVIY-KYALDHIPKDRTAEIYKAYT-IHE--KKYGDRAGI 224
                   V +R  +++  E+A   Y  + L +   DR  EIY+ +  +H   K +   A  
Sbjct:   166 ------VFERWMEWQPEEQAWQTYVNFELRYKEIDRAREIYERFVYVHPDVKNWIKFARF 219

Query:   225 ED----VIVSKRKFQYEEEVNSNPNNYDAWF-DYLRLLEDEGNADLIRETYERAIANIPP 279
             E+    +  S+R F+   E   +    +  F  + R  E +   D  R  Y+ A+ ++P 
Sbjct:   220 EESHGFIHGSRRVFERAVEFFGDDYIEERLFIAFARFEEGQKEHDRARIIYKYALDHLPK 279

Query:   280 TKFAELESLLGDMERA---RA-IYELAISQPRLDMPELV---------WKAYIDFEVGQG 326
              +  EL       E+    RA I ++ +S+ +    + V         W  Y+     +G
Sbjct:   280 DRTQELFKAYTKHEKKYGDRAGIEDVIVSKRKYQYEQEVAANPTNYDAWFDYLRLIEAEG 339

Query:   327 ERDKVRELHERLL 339
             +RD++RE +ER +
Sbjct:   340 DRDQIRETYERAI 352

 Score = 79 (32.9 bits), Expect = 6.1e-10, Sum P(2) = 6.1e-10
 Identities = 38/146 (26%), Positives = 67/146 (45%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE   G    AR++YER +E         K++++FAKFE G    +GD     ++ V   
Sbjct:   519 FEVALGETELARQLYERLLE----RTQHVKVWMSFAKFEMGL--SHGDSGPDAELNVQLA 572

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK-RKFQYE 237
             +  YE   RA  + +   D   K+    + +A+   E+   D   ++ V+    R+ +  
Sbjct:   573 RRIYE---RANEMLRQLGD---KESRVLLLEAWRDFERDASDSQEMQKVMDKMPRRIKKR 626

Query:   238 EEVNSNPNNYDAW---FDYLRLLEDE 260
             +++ S+    + W   FDY+   EDE
Sbjct:   627 QKIVSDNGVEEGWEEVFDYI-FPEDE 651

 Score = 40 (19.1 bits), Expect = 2.9e-60, Sum P(2) = 2.9e-60
 Identities = 8/17 (47%), Positives = 10/17 (58%)

Query:    17 LREAKERDLEIVPPVEE 33
             +RE  ER +  VPP  E
Sbjct:   344 IRETYERAISNVPPANE 360


>UNIPROTKB|F1MZT2 [details] [associations]
            symbol:CRNKL1 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] [GO:0000245 "spliceosomal
            complex assembly" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
            SMART:SM00386 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
            GO:GO:0000245 OMA:KFTFAKI GeneTree:ENSGT00550000074931
            EMBL:DAAA02035750 IPI:IPI01017666 Ensembl:ENSBTAT00000011148
            Uniprot:F1MZT2
        Length = 781

 Score = 560 (202.2 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 119/280 (42%), Positives = 179/280 (63%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+ +L+ IP K  T A+++  Y   E +       +++  ++R    
Sbjct:   472 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQ------KNLPFARRALG- 524

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   525 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 582

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             +ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct:   583 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 642

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+SSG E S++  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++
Sbjct:   643 AQFELSSGKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRNFEDEFGTASDKERVD 702

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   D+G + GWEE +DYIFPED A +PN
Sbjct:   703 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 742

 Score = 412 (150.1 bits), Expect = 1.4e-49, Sum P(2) = 1.4e-49
 Identities = 91/178 (51%), Positives = 117/178 (65%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE--G---------QR--EKYG 165
             FE +   V  AR +YER +      + D K +I +A+FEE  G         +R  E +G
Sbjct:   275 FELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFG 334

Query:   166 DRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223
             D    E + V+  KF+   +E ER RVIYKYALD I K    E++K YTI EKK+GDR G
Sbjct:   335 DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRG 394

Query:   224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281
             IED+IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  A+ +RE YERAIAN+PP +
Sbjct:   395 IEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPPVQ 452

 Score = 164 (62.8 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
 Identities = 54/206 (26%), Positives = 96/206 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:   181 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 240

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  AR ++E  +  +P     E  W +YI+FE+   E D+ R ++ER +   
Sbjct:   241 YMEEMLGNIAGARQVFERWMEWRPE----EQAWHSYINFELRYKEVDRARTIYERYIHSL 296

Query:   343 V--H--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398
             V  H  VK W+ YA+FE   G     + AR+V+ERA +        +E + +  A+ +FE
Sbjct:   297 VLVHPDVKNWIKYARFEEKHG---YFAHARKVYERAVEFF-GDEHMDEHLYV--AFAKFE 350

Query:   399 AQHGDDES-RAKLNSKLPRRAKKRVK 423
                 + E  R      L R +K+  +
Sbjct:   351 ENQKEFERVRVIYKYALDRISKQEAQ 376

 Score = 137 (53.3 bits), Expect = 8.7e-67, Sum P(2) = 8.7e-67
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:   102 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 146

 Score = 137 (53.3 bits), Expect = 2.9e-15, Sum P(2) = 2.9e-15
 Identities = 59/224 (26%), Positives = 97/224 (43%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:   134 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 192

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   193 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNI 249

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERV 388
                R++ ER +E     + W +Y  FE+   + D    AR ++ER   +L       +  
Sbjct:   250 AGARQVFERWMEWRPEEQAWHSYINFELRYKEVDR---ARTIYERYIHSLVLVHPDVKNW 306

Query:   389 MLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEE 432
             +    +  FE +HG   + A+   K+  RA   V+ + DE ++E
Sbjct:   307 I---KYARFEEKHGYF-AHAR---KVYERA---VEFFGDEHMDE 340

 Score = 92 (37.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
 Identities = 61/277 (22%), Positives = 120/277 (43%)

Query:   179 KFQYEEHERARVIY-KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237
             + +Y+E +RAR IY +Y    +      + +  Y   E+K+G  A    V   +R  ++ 
Sbjct:   276 ELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKHGYFAHARKVY--ERAVEFF 333

Query:   238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL-------ESLLG 290
              + + + + Y A   + +  E++   + +R  Y+ A+  I   +  EL       E   G
Sbjct:   334 GDEHMDEHLYVA---FAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFG 390

Query:   291 DMERARAIYELAISQPRLDMPELV---------WKAYIDFEVGQGERDKVRELHERLL-- 339
             D    R I ++ +S+ R    E V         W  Y+       E + VRE++ER +  
Sbjct:   391 DR---RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIAN 447

Query:   340 ----ERTVHVK----VWMNYAQFE-MSSGDEDSVSLARRVFERANQALKASSEKEERVML 390
                 +   H K    +W+NYA +E + + D +     R+V++ + + +        ++ L
Sbjct:   448 VPPVQEKRHWKRYIYLWINYALYEELEAKDPERT---RQVYQASLELIPHKKFTFAKMWL 504

Query:   391 LEAWKEFEAQHGD-DESRAKLNSKLPRRAKKRV-KTY 425
             L A  +FE +  +   +R  L + + +  K ++ K Y
Sbjct:   505 LYA--QFEIRQKNLPFARRALGTSIGKCPKNKLFKGY 539

 Score = 66 (28.3 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
 Identities = 57/258 (22%), Positives = 106/258 (41%)

Query:   111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE------GQR--- 161
             T  ++    E +N  V+ AR +++RA+      N   + +  +   EE      G R   
Sbjct:   200 TLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVN---QFWYKYTYMEEMLGNIAGARQVF 256

Query:   162 EKYGDRAGIEDVIVSKRKFQ--YEEHERARVIY-KYALDHIPKDRTAEIYKAYTIHEKKY 218
             E++ +    E    S   F+  Y+E +RAR IY +Y    +      + +  Y   E+K+
Sbjct:   257 ERWMEWRPEEQAWHSYINFELRYKEVDRARTIYERYIHSLVLVHPDVKNWIKYARFEEKH 316

Query:   219 GDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             G  A    V   +R  ++  + + + + Y A   + +  E++   + +R  Y+ A+  I 
Sbjct:   317 GYFAHARKVY--ERAVEFFGDEHMDEHLYVA---FAKFEENQKEFERVRVIYKYALDRIS 371

Query:   279 PTKFAEL-------ESLLGDMERARAIYELAISQPRLDMPELV------WKAYIDFEVGQ 325
               +  EL       E   GD    R I ++ +S+ R    E V      + A+ D+ +  
Sbjct:   372 KQEAQELFKNYTIFEKKFGDR---RGIEDIIVSKRRFQYEEEVKANPHNYDAWFDY-LRL 427

Query:   326 GERDKVRELHERLLERTV 343
              E D   E    + ER +
Sbjct:   428 VESDAEAETVREVYERAI 445

 Score = 63 (27.2 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
 Identities = 59/230 (25%), Positives = 96/230 (41%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEE--GQREKYGDRAGIEDVIVSKRKFQYEEHER 187
             RK+YE+ +EF G EN     +I FA+ E   G  E+   RA I ++ +S+ +    E   
Sbjct:   553 RKLYEKFLEF-GPENCTS--WIKFAELETILGDIERA--RA-IYELAISQPRLDMPEVLW 606

Query:   188 ARVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIE-----DVIVSKRKFQYEEE 239
                I  + ++    +RT  +Y+     T H K +   A  E     +  ++K + Q  EE
Sbjct:   607 KSYI-DFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLAKCR-QIYEE 664

Query:   240 VNSNPNNYDAWFDYLRLLEDEGN-ADLIRETYERA-IANIPPTKFAELESLLGD------ 291
              N    N +   + L LLE   N  D      ++  +  + P K  +   +  D      
Sbjct:   665 ANKTMRNCEEKEERLMLLESWRNFEDEFGTASDKERVDKLMPEKVKKRRKVQADDGSDAG 724

Query:   292 -MERARAIY-ELAISQPRLDMPEL--VWKAYIDFEVGQGERDKVRELHER 337
               E    I+ E A +QP L +  +  +WK     E   GE+D   +  ER
Sbjct:   725 WEEYYDYIFPEDAANQPNLKLLAMAKLWKKQQQ-EKEAGEQDPDTDTAER 773

 Score = 48 (22.0 bits), Expect = 2.0e-57, Sum P(2) = 2.0e-57
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE + +RE  ER +  VPPV+E   W+       +Y ++ E EA  P
Sbjct:   428 VESDAEAETVREVYERAIANVPPVQEKRHWKRYIYLWINYALYEELEAKDP 478


>MGI|MGI:1914127 [details] [associations]
            symbol:Crnkl1 "Crn, crooked neck-like 1 (Drosophila)"
            species:10090 "Mus musculus" [GO:0000245 "spliceosomal complex
            assembly" evidence=ISO] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=ISO] [GO:0003723 "RNA binding" evidence=ISO]
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
            [GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF02184 SMART:SM00386 MGI:MGI:1914127 GO:GO:0016607
            GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0000245
            eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
            GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
            EMBL:AK004749 EMBL:AK012962 EMBL:AK088882 EMBL:BC029187
            IPI:IPI00132376 RefSeq:NP_080096.1 UniGene:Mm.248755
            ProteinModelPortal:P63154 SMR:P63154 STRING:P63154
            PhosphoSite:P63154 PaxDb:P63154 PRIDE:P63154
            Ensembl:ENSMUST00000001818 GeneID:66877 KEGG:mmu:66877
            InParanoid:P63154 OrthoDB:EOG4SJ5DC ChiTaRS:CRNKL1 NextBio:322905
            Bgee:P63154 CleanEx:MM_CRNKL1 Genevestigator:P63154
            GermOnline:ENSMUSG00000001767 Uniprot:P63154
        Length = 690

 Score = 557 (201.1 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 119/280 (42%), Positives = 179/280 (63%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+ +L+ IP K  T A+++  Y   E +       +++  ++R    
Sbjct:   384 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQ------KNLPFARRALG- 436

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   437 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 494

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             +ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ +LL+RT HVKVW+++
Sbjct:   495 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISF 554

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+SSG E SV+  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++
Sbjct:   555 AQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVD 614

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   D+G + GWEE +DYIFPED A +PN
Sbjct:   615 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 654

 Score = 406 (148.0 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
 Identities = 90/172 (52%), Positives = 111/172 (64%)

Query:   119 FEEQNGFVSGARKVYERAV-------EFFGEENLDEK-LFIAFA-KFEEGQREKYGDRAG 169
             FE +   V  AR +YER V        +      +EK  + A A K  E   E +GD   
Sbjct:   191 FELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 250

Query:   170 IEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
              E + V+  KF+   +E ER RVIYKYALD I K    E++K YTI EKK+GDR GIED+
Sbjct:   251 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 310

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  AD +RE YERAIAN+PP
Sbjct:   311 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPP 362

 Score = 159 (61.0 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
 Identities = 53/204 (25%), Positives = 95/204 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:    97 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 156

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  AR ++E  +  QP     E  W +YI+FE+   E ++ R ++ER +   
Sbjct:   157 YMEEMLGNVAGARQVFERWMEWQPE----EQAWHSYINFELRYKEVERARTIYERFV--L 210

Query:   343 VH--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
             VH  VK W+ YA+FE         + AR+V+ERA +        +E + +  A+ +FE  
Sbjct:   211 VHPAVKNWIKYARFEEKHA---YFAHARKVYERAVEFF-GDEHMDEHLYV--AFAKFEEN 264

Query:   401 HGDDES-RAKLNSKLPRRAKKRVK 423
               + E  R      L R +K+  +
Sbjct:   265 QKEFERVRVIYKYALDRISKQEAQ 288

 Score = 137 (53.3 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:    18 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 62

 Score = 134 (52.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 46/165 (27%), Positives = 72/165 (43%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:    50 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   109 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNV 165

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER +E     + W +Y  FE+   +   V  AR ++ER
Sbjct:   166 AGARQVFERWMEWQPEEQAWHSYINFELRYKE---VERARTIYER 207

 Score = 134 (52.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 71/285 (24%), Positives = 121/285 (42%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSKR 178
             EE N +    RK +E  +    +       +I +A++EE  +E    R+  E  + V  R
Sbjct:    57 EELNDYKLRKRKTFEDNIR---KNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYR 113

Query:   179 KF----QYEEHE-------RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
                   +Y E E        AR I+  A+  +P  R  + +  YT  E+  G+ AG   V
Sbjct:   114 NITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGARQV 171

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FA 283
                  ++Q EE+         AW  Y+         +  R  YER +   P  K    +A
Sbjct:   172 FERWMEWQPEEQ---------AWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYA 222

Query:   284 ELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
               E        AR +YE A+     + M E ++ A+  FE  Q E ++VR +++  L+R 
Sbjct:   223 RFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI 282

Query:   343 VHVK---VWMNYAQFEMSSGDE---DSVSLARRVFERANQALKAS 381
                +   ++ NY  FE   GD    + + +++R F+   + +KA+
Sbjct:   283 SKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE-VKAN 326

 Score = 90 (36.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 57/217 (26%), Positives = 95/217 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA-KFEEGQREK--YGDRAGIEDVIVS 176
             EE  G V+GAR+V+ER +E+  EE      +I F  +++E +R +  Y     +   + +
Sbjct:   159 EEMLGNVAGARQVFERWMEWQPEEQAWHS-YINFELRYKEVERARTIYERFVLVHPAVKN 217

Query:   177 KRKF-QYEE-HE---RARVIYKYALDHIPKDRTAE-IYKAYTIHEK--KYGDRAG-IEDV 227
               K+ ++EE H     AR +Y+ A++    +   E +Y A+   E+  K  +R   I   
Sbjct:   218 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 277

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---FAE 284
              + +   Q  +E+  N   ++  F   R +ED       R  YE  +   P      F  
Sbjct:   278 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI-IVSKRRFQYEEEVKANPHNYDAWFDY 336

Query:   285 LESLLGDMER--ARAIYELAISQPRLDMPELVWKAYI 319
             L  +  D E    R +YE AI+       +  WK YI
Sbjct:   337 LRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYI 373

 Score = 63 (27.2 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
 Identities = 40/139 (28%), Positives = 63/139 (45%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEE--GQREKYGDRAGIEDVIVSKRKFQYEEHER 187
             RK+YE+ +EF G EN     +I FA+ E   G  E+   RA I ++ +S+ +    E   
Sbjct:   465 RKLYEKFLEF-GPENCTS--WIKFAELETILGDIERA--RA-IYELAISQPRLDMPEVLW 518

Query:   188 ARVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIE-----DVIVSKRKFQYEEE 239
                I  + ++    +RT  +Y+     T H K +   A  E     +  V+K + Q  EE
Sbjct:   519 KSYI-DFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCR-QIYEE 576

Query:   240 VNSNPNNYDAWFDYLRLLE 258
              N    N +   + L LLE
Sbjct:   577 ANKTMRNCEEKEERLMLLE 595

 Score = 45 (20.9 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE   +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   340 VESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDP 390


>RGD|620507 [details] [associations]
            symbol:Crnkl1 "crooked neck pre-mRNA splicing factor-like 1
            (Drosophila)" species:10116 "Rattus norvegicus" [GO:0000245
            "spliceosomal complex assembly" evidence=ISO;ISS] [GO:0003723 "RNA
            binding" evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
            evidence=ISO;ISS] [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA;ISO] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF02184 SMART:SM00386 RGD:620507
            GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10 GO:GO:0071013
            GO:GO:0000245 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
            GeneTree:ENSGT00550000074931 CTD:51340 HOVERGEN:HBG051046
            OrthoDB:EOG4SJ5DC EMBL:AF245018 EMBL:BC085718 IPI:IPI00327482
            RefSeq:NP_446249.1 RefSeq:XP_003749628.1 UniGene:Rn.162694
            ProteinModelPortal:P63155 SMR:P63155 STRING:P63155 PRIDE:P63155
            Ensembl:ENSRNOT00000014632 GeneID:100910202 GeneID:116481
            KEGG:rno:100910202 KEGG:rno:116481 UCSC:RGD:620507
            InParanoid:P63155 NextBio:619051 Genevestigator:P63155
            GermOnline:ENSRNOG00000040045 Uniprot:P63155
        Length = 690

 Score = 557 (201.1 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 119/280 (42%), Positives = 179/280 (63%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+ +L+ IP K  T A+++  Y   E +       +++  ++R    
Sbjct:   384 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLYYAQFEIRQ------KNLPFARRALG- 436

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   437 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 494

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             +ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ +LL+RT HVKVW+++
Sbjct:   495 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRQLLQRTQHVKVWISF 554

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+SSG E SV+  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++
Sbjct:   555 AQFELSSGKEGSVAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVD 614

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   D+G + GWEE +DYIFPED A +PN
Sbjct:   615 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 654

 Score = 406 (148.0 bits), Expect = 2.4e-49, Sum P(2) = 2.4e-49
 Identities = 90/172 (52%), Positives = 111/172 (64%)

Query:   119 FEEQNGFVSGARKVYERAV-------EFFGEENLDEK-LFIAFA-KFEEGQREKYGDRAG 169
             FE +   V  AR +YER V        +      +EK  + A A K  E   E +GD   
Sbjct:   191 FELRYKEVERARTIYERFVLVHPAVKNWIKYARFEEKHAYFAHARKVYERAVEFFGDEHM 250

Query:   170 IEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
              E + V+  KF+   +E ER RVIYKYALD I K    E++K YTI EKK+GDR GIED+
Sbjct:   251 DEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI 310

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  AD +RE YERAIAN+PP
Sbjct:   311 IVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEADTVREVYERAIANVPP 362

 Score = 159 (61.0 bits), Expect = 7.2e-18, Sum P(2) = 7.2e-18
 Identities = 53/204 (25%), Positives = 95/204 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:    97 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 156

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  AR ++E  +  QP     E  W +YI+FE+   E ++ R ++ER +   
Sbjct:   157 YMEEMLGNVAGARQVFERWMEWQPE----EQAWHSYINFELRYKEVERARTIYERFV--L 210

Query:   343 VH--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
             VH  VK W+ YA+FE         + AR+V+ERA +        +E + +  A+ +FE  
Sbjct:   211 VHPAVKNWIKYARFEEKHA---YFAHARKVYERAVEFF-GDEHMDEHLYV--AFAKFEEN 264

Query:   401 HGDDES-RAKLNSKLPRRAKKRVK 423
               + E  R      L R +K+  +
Sbjct:   265 QKEFERVRVIYKYALDRISKQEAQ 288

 Score = 137 (53.3 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:    18 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 62

 Score = 134 (52.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 46/165 (27%), Positives = 72/165 (43%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:    50 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 108

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   109 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNV 165

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER +E     + W +Y  FE+   +   V  AR ++ER
Sbjct:   166 AGARQVFERWMEWQPEEQAWHSYINFELRYKE---VERARTIYER 207

 Score = 134 (52.2 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 71/285 (24%), Positives = 121/285 (42%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSKR 178
             EE N +    RK +E  +    +       +I +A++EE  +E    R+  E  + V  R
Sbjct:    57 EELNDYKLRKRKTFEDNIR---KNRTVISNWIKYAQWEESLKEIQRARSIYERALDVDYR 113

Query:   179 KF----QYEEHE-------RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
                   +Y E E        AR I+  A+  +P  R  + +  YT  E+  G+ AG   V
Sbjct:   114 NITLWLKYAEMEMKNRQVNHARNIWDRAITTLP--RVNQFWYKYTYMEEMLGNVAGARQV 171

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FA 283
                  ++Q EE+         AW  Y+         +  R  YER +   P  K    +A
Sbjct:   172 FERWMEWQPEEQ---------AWHSYINFELRYKEVERARTIYERFVLVHPAVKNWIKYA 222

Query:   284 ELESLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
               E        AR +YE A+     + M E ++ A+  FE  Q E ++VR +++  L+R 
Sbjct:   223 RFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRI 282

Query:   343 VHVK---VWMNYAQFEMSSGDE---DSVSLARRVFERANQALKAS 381
                +   ++ NY  FE   GD    + + +++R F+   + +KA+
Sbjct:   283 SKQEAQELFKNYTIFEKKFGDRRGIEDIIVSKRRFQYEEE-VKAN 326

 Score = 90 (36.7 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
 Identities = 57/217 (26%), Positives = 95/217 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA-KFEEGQREK--YGDRAGIEDVIVS 176
             EE  G V+GAR+V+ER +E+  EE      +I F  +++E +R +  Y     +   + +
Sbjct:   159 EEMLGNVAGARQVFERWMEWQPEEQAWHS-YINFELRYKEVERARTIYERFVLVHPAVKN 217

Query:   177 KRKF-QYEE-HE---RARVIYKYALDHIPKDRTAE-IYKAYTIHEK--KYGDRAG-IEDV 227
               K+ ++EE H     AR +Y+ A++    +   E +Y A+   E+  K  +R   I   
Sbjct:   218 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 277

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK---FAE 284
              + +   Q  +E+  N   ++  F   R +ED       R  YE  +   P      F  
Sbjct:   278 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI-IVSKRRFQYEEEVKANPHNYDAWFDY 336

Query:   285 LESLLGDMER--ARAIYELAISQPRLDMPELVWKAYI 319
             L  +  D E    R +YE AI+       +  WK YI
Sbjct:   337 LRLVESDAEADTVREVYERAIANVPPIQEKRHWKRYI 373

 Score = 63 (27.2 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
 Identities = 40/139 (28%), Positives = 63/139 (45%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEE--GQREKYGDRAGIEDVIVSKRKFQYEEHER 187
             RK+YE+ +EF G EN     +I FA+ E   G  E+   RA I ++ +S+ +    E   
Sbjct:   465 RKLYEKFLEF-GPENCTS--WIKFAELETILGDIERA--RA-IYELAISQPRLDMPEVLW 518

Query:   188 ARVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIE-----DVIVSKRKFQYEEE 239
                I  + ++    +RT  +Y+     T H K +   A  E     +  V+K + Q  EE
Sbjct:   519 KSYI-DFEIEQEETERTRNLYRQLLQRTQHVKVWISFAQFELSSGKEGSVAKCR-QIYEE 576

Query:   240 VNSNPNNYDAWFDYLRLLE 258
              N    N +   + L LLE
Sbjct:   577 ANKTMRNCEEKEERLMLLE 595

 Score = 45 (20.9 bits), Expect = 8.8e-57, Sum P(2) = 8.8e-57
 Identities = 16/51 (31%), Positives = 26/51 (50%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE   +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   340 VESDAEADTVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDP 390


>UNIPROTKB|Q5JY65 [details] [associations]
            symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
            "Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
            SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
            HOGENOM:HOG000207972 EMBL:AL035454 IPI:IPI00219317
            UniGene:Hs.171342 HGNC:HGNC:15762 HOVERGEN:HBG051046
            OrthoDB:EOG4SJ5DC SMR:Q5JY65 IntAct:Q5JY65 Ensembl:ENST00000377327
            Uniprot:Q5JY65
        Length = 836

 Score = 563 (203.2 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 119/280 (42%), Positives = 180/280 (64%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+ +L+ IP K  T A+++  Y   E +       +++ +++R    
Sbjct:   533 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQ------KNLSLARRALG- 585

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   586 -TSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 643

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             ++RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct:   644 IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 703

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+SSG E S++  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++
Sbjct:   704 AQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVD 763

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   D+G + GWEE FDYIFPED A +PN
Sbjct:   764 KLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPN 803

 Score = 400 (145.9 bits), Expect = 4.5e-48, Sum P(2) = 4.5e-48
 Identities = 91/176 (51%), Positives = 115/176 (65%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG-----------QR--EKYG 165
             FE +   V  AR +YER V      + D K +I +A+FEE            +R  E +G
Sbjct:   340 FELRYKEVDRARTIYERFVLV----HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG 395

Query:   166 DRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223
             D    E + V+  KF+   +E ER RVIYKYALD I K    E++K YTI EKK+GDR G
Sbjct:   396 DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRG 455

Query:   224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             IED+IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  A+ +RE YERAIAN+PP
Sbjct:   456 IEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 511

 Score = 162 (62.1 bits), Expect = 5.6e-18, Sum P(2) = 5.6e-18
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:   246 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 305

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  AR ++E  +  QP     E  W +YI+FE+   E D+ R ++ER +   
Sbjct:   306 YMEEMLGNVAGARQVFERWMEWQPE----EQAWHSYINFELRYKEVDRARTIYERFVLVH 361

Query:   343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402
               VK W+ YA+FE         + AR+V+ERA +        +E + +  A+ +FE    
Sbjct:   362 PDVKNWIKYARFEEKHA---YFAHARKVYERAVEFF-GDEHMDEHLYV--AFAKFEENQK 415

Query:   403 DDE 405
             + E
Sbjct:   416 EFE 418

 Score = 137 (53.3 bits), Expect = 1.9e-66, Sum P(2) = 1.9e-66
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:   167 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 211

 Score = 135 (52.6 bits), Expect = 5.5e-15, Sum P(2) = 5.5e-15
 Identities = 46/165 (27%), Positives = 72/165 (43%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:   199 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 257

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   258 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNV 314

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER +E     + W +Y  FE+   + D    AR ++ER
Sbjct:   315 AGARQVFERWMEWQPEEQAWHSYINFELRYKEVDR---ARTIYER 356

 Score = 85 (35.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
 Identities = 56/217 (25%), Positives = 94/217 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA-KFEEGQREK--YGDRAGIEDVIVS 176
             EE  G V+GAR+V+ER +E+  EE      +I F  +++E  R +  Y     +   + +
Sbjct:   308 EEMLGNVAGARQVFERWMEWQPEEQAWHS-YINFELRYKEVDRARTIYERFVLVHPDVKN 366

Query:   177 KRKF-QYEE-HE---RARVIYKYALDHIPKDRTAE-IYKAYTIHEK--KYGDRAG-IEDV 227
               K+ ++EE H     AR +Y+ A++    +   E +Y A+   E+  K  +R   I   
Sbjct:   367 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 426

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELES 287
              + +   Q  +E+  N   ++  F   R +ED       R  YE  +   P    A  + 
Sbjct:   427 ALDRISKQDAQELFKNYTIFEKKFGDRRGIEDI-IVSKRRFQYEEEVKANPHNYDAWFDY 485

Query:   288 LL-----GDMERARAIYELAISQPRLDMPELVWKAYI 319
             L       + E  R +YE AI+       +  WK YI
Sbjct:   486 LRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYI 522

 Score = 60 (26.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 38/138 (27%), Positives = 62/138 (44%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA-GIEDVIVSKRKFQYEEHERA 188
             RK+YE+ +EF G EN     +I FA+ E    +   DRA  I ++ +S+ +    E    
Sbjct:   614 RKLYEKFLEF-GPENCTS--WIKFAELETILGDI--DRARAIYELAISQPRLDMPEVLWK 668

Query:   189 RVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIE-----DVIVSKRKFQYEEEV 240
               I  + ++    +RT  +Y+     T H K +   A  E     +  ++K + Q  EE 
Sbjct:   669 SYI-DFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCR-QIYEEA 726

Query:   241 NSNPNNYDAWFDYLRLLE 258
             N    N +   + L LLE
Sbjct:   727 NKTMRNCEEKEERLMLLE 744

 Score = 47 (21.6 bits), Expect = 5.8e-57, Sum P(2) = 5.8e-57
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE + +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   489 VESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDP 539


>UNIPROTKB|Q9BZJ0 [details] [associations]
            symbol:CRNKL1 "Crooked neck-like protein 1" species:9606
            "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] [GO:0000245 "spliceosomal complex
            assembly" evidence=IDA] [GO:0005681 "spliceosomal complex"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0000398
            "mRNA splicing, via spliceosome" evidence=IC] [GO:0071013
            "catalytic step 2 spliceosome" evidence=IDA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
            EMBL:AF318303 GO:GO:0005737 GO:GO:0016607 GO:GO:0003723
            Gene3D:1.25.40.10 GO:GO:0071013 GO:GO:0000245 eggNOG:NOG327505
            KO:K12869 OMA:KFTFAKI EMBL:AF255443 EMBL:AF318302 EMBL:AF318304
            EMBL:AF318305 EMBL:AF111802 EMBL:AK023246 EMBL:AK023728
            EMBL:AK292799 EMBL:AL035454 EMBL:AK022908 IPI:IPI00177437
            IPI:IPI00219317 IPI:IPI00219318 IPI:IPI00219320 IPI:IPI01011870
            RefSeq:NP_057736.4 UniGene:Hs.171342 ProteinModelPortal:Q9BZJ0
            SMR:Q9BZJ0 IntAct:Q9BZJ0 STRING:Q9BZJ0 PhosphoSite:Q9BZJ0
            DMDM:147744555 PaxDb:Q9BZJ0 PRIDE:Q9BZJ0 DNASU:51340
            Ensembl:ENST00000377340 Ensembl:ENST00000490910
            Ensembl:ENST00000496549 Ensembl:ENST00000536226 GeneID:51340
            KEGG:hsa:51340 UCSC:uc002wrs.3 CTD:51340 GeneCards:GC20M019963
            H-InvDB:HIX0015678 HGNC:HGNC:15762 MIM:610952 neXtProt:NX_Q9BZJ0
            PharmGKB:PA26886 HOVERGEN:HBG051046 InParanoid:Q9BZJ0
            GenomeRNAi:51340 NextBio:54782 ArrayExpress:Q9BZJ0 Bgee:Q9BZJ0
            Genevestigator:Q9BZJ0 GermOnline:ENSG00000101343 Uniprot:Q9BZJ0
        Length = 848

 Score = 563 (203.2 bits), Expect = 2.6e-66, Sum P(2) = 2.6e-66
 Identities = 119/280 (42%), Positives = 180/280 (64%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+ +L+ IP K  T A+++  Y   E +       +++ +++R    
Sbjct:   545 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWILYAQFEIRQ------KNLSLARRALG- 597

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   598 -TSIGKCPKN-KLFKVYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 655

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             ++RARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct:   656 IDRARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 715

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+SSG E S++  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++
Sbjct:   716 AQFELSSGKEGSLTKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEEEFGTASDKERVD 775

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   D+G + GWEE FDYIFPED A +PN
Sbjct:   776 KLMPEKVKKRRKVQTDDGSDAGWEEYFDYIFPEDAANQPN 815

 Score = 400 (145.9 bits), Expect = 4.9e-48, Sum P(2) = 4.9e-48
 Identities = 91/176 (51%), Positives = 115/176 (65%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEG-----------QR--EKYG 165
             FE +   V  AR +YER V      + D K +I +A+FEE            +R  E +G
Sbjct:   352 FELRYKEVDRARTIYERFVLV----HPDVKNWIKYARFEEKHAYFAHARKVYERAVEFFG 407

Query:   166 DRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223
             D    E + V+  KF+   +E ER RVIYKYALD I K    E++K YTI EKK+GDR G
Sbjct:   408 DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQDAQELFKNYTIFEKKFGDRRG 467

Query:   224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             IED+IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  A+ +RE YERAIAN+PP
Sbjct:   468 IEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAEAVREVYERAIANVPP 523

 Score = 162 (62.1 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
 Identities = 48/183 (26%), Positives = 86/183 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:   258 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 317

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  AR ++E  +  QP     E  W +YI+FE+   E D+ R ++ER +   
Sbjct:   318 YMEEMLGNVAGARQVFERWMEWQPE----EQAWHSYINFELRYKEVDRARTIYERFVLVH 373

Query:   343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402
               VK W+ YA+FE         + AR+V+ERA +        +E + +  A+ +FE    
Sbjct:   374 PDVKNWIKYARFEEKHA---YFAHARKVYERAVEFF-GDEHMDEHLYV--AFAKFEENQK 427

Query:   403 DDE 405
             + E
Sbjct:   428 EFE 430

 Score = 137 (53.3 bits), Expect = 2.6e-66, Sum P(2) = 2.6e-66
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:   179 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 223

 Score = 135 (52.6 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
 Identities = 46/165 (27%), Positives = 72/165 (43%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:   211 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 269

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   270 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNV 326

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER +E     + W +Y  FE+   + D    AR ++ER
Sbjct:   327 AGARQVFERWMEWQPEEQAWHSYINFELRYKEVDR---ARTIYER 368

 Score = 85 (35.0 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
 Identities = 56/217 (25%), Positives = 94/217 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA-KFEEGQREK--YGDRAGIEDVIVS 176
             EE  G V+GAR+V+ER +E+  EE      +I F  +++E  R +  Y     +   + +
Sbjct:   320 EEMLGNVAGARQVFERWMEWQPEEQAWHS-YINFELRYKEVDRARTIYERFVLVHPDVKN 378

Query:   177 KRKF-QYEE-HE---RARVIYKYALDHIPKDRTAE-IYKAYTIHEK--KYGDRAG-IEDV 227
               K+ ++EE H     AR +Y+ A++    +   E +Y A+   E+  K  +R   I   
Sbjct:   379 WIKYARFEEKHAYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 438

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELES 287
              + +   Q  +E+  N   ++  F   R +ED       R  YE  +   P    A  + 
Sbjct:   439 ALDRISKQDAQELFKNYTIFEKKFGDRRGIEDI-IVSKRRFQYEEEVKANPHNYDAWFDY 497

Query:   288 LL-----GDMERARAIYELAISQPRLDMPELVWKAYI 319
             L       + E  R +YE AI+       +  WK YI
Sbjct:   498 LRLVESDAEAEAVREVYERAIANVPPIQEKRHWKRYI 534

 Score = 60 (26.2 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
 Identities = 38/138 (27%), Positives = 62/138 (44%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA-GIEDVIVSKRKFQYEEHERA 188
             RK+YE+ +EF G EN     +I FA+ E    +   DRA  I ++ +S+ +    E    
Sbjct:   626 RKLYEKFLEF-GPENCTS--WIKFAELETILGDI--DRARAIYELAISQPRLDMPEVLWK 680

Query:   189 RVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIE-----DVIVSKRKFQYEEEV 240
               I  + ++    +RT  +Y+     T H K +   A  E     +  ++K + Q  EE 
Sbjct:   681 SYI-DFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFELSSGKEGSLTKCR-QIYEEA 738

Query:   241 NSNPNNYDAWFDYLRLLE 258
             N    N +   + L LLE
Sbjct:   739 NKTMRNCEEKEERLMLLE 756

 Score = 47 (21.6 bits), Expect = 7.9e-57, Sum P(2) = 7.9e-57
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE + +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   501 VESDAEAEAVREVYERAIANVPPIQEKRHWKRYIYLWINYALYEELEAKDP 551


>UNIPROTKB|J9P5Z1 [details] [associations]
            symbol:CRNKL1 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293
            SMART:SM00386 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
            GeneTree:ENSGT00550000074931 EMBL:AAEX03013754
            Ensembl:ENSCAFT00000047479 Uniprot:J9P5Z1
        Length = 728

 Score = 551 (199.0 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 118/280 (42%), Positives = 178/280 (63%)

Query:   179 KFQYEEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
             + + ++ ER R +Y+ +L+ IP K  T A+++  Y   E +       +++  ++R    
Sbjct:   425 ELEAKDPERTRQVYQASLELIPHKKFTFAKMWLLYAQFEIRQ------KNLPFARRALG- 477

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGD 291
                +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD
Sbjct:   478 -TSIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKFLEFGPENCTSWIKFAELETILGD 535

Query:   292 MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNY 351
             +ERARAIYELAISQPRLDMPE++WK+YIDFE+ Q E ++ R L+ RLL+RT HVKVW+++
Sbjct:   536 IERARAIYELAISQPRLDMPEVLWKSYIDFEIEQEETERTRNLYRRLLQRTQHVKVWISF 595

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             AQFE+SS  E S++  R+++E AN+ ++   EKEER+MLLE+W+ FE + G    + +++
Sbjct:   596 AQFELSSRKEGSLAKCRQIYEEANKTMRNCEEKEERLMLLESWRSFEDEFGTVSDKERVD 655

Query:   412 SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
               +P + KKR K   D+G + GWEE +DYIFPED A +PN
Sbjct:   656 KLMPEKVKKRRKVQADDGSDAGWEEYYDYIFPEDAANQPN 695

 Score = 403 (146.9 bits), Expect = 8.4e-49, Sum P(2) = 8.4e-49
 Identities = 92/176 (52%), Positives = 116/176 (65%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE--G---------QR--EKYG 165
             FE +   V  AR +YER V      + D K +I +A+FEE  G         +R  E +G
Sbjct:   232 FELRYKEVDRARTIYERFVLV----HPDVKNWIKYARFEEKHGYFAHARKVYERAVEFFG 287

Query:   166 DRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223
             D    E + V+  KF+   +E ER RVIYKYALD I K    E++K YTI EKK+GDR G
Sbjct:   288 DEHMDEHLYVAFAKFEENQKEFERVRVIYKYALDRISKQEAQELFKNYTIFEKKFGDRRG 347

Query:   224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             IED+IVSKR+FQYEEEV +NP+NYDAWFDYLRL+E +  A+ +RE YERAIAN+PP
Sbjct:   348 IEDIIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDAEAETVREVYERAIANVPP 403

 Score = 169 (64.5 bits), Expect = 6.2e-19, Sum P(2) = 6.2e-19
 Identities = 53/202 (26%), Positives = 94/202 (46%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:   138 IQRARSIYERALDVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQFWYKYT 197

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++  AR ++E  +  QP     E  W +YI+FE+   E D+ R ++ER +   
Sbjct:   198 YMEEMLGNIAGARQVFERWMEWQPE----EQAWHSYINFELRYKEVDRARTIYERFVLVH 253

Query:   343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402
               VK W+ YA+FE   G     + AR+V+ERA +        +E + +  A+ +FE    
Sbjct:   254 PDVKNWIKYARFEEKHG---YFAHARKVYERAVEFF-GDEHMDEHLYV--AFAKFEENQK 307

Query:   403 DDES-RAKLNSKLPRRAKKRVK 423
             + E  R      L R +K+  +
Sbjct:   308 EFERVRVIYKYALDRISKQEAQ 329

 Score = 137 (53.3 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 30/45 (66%), Positives = 36/45 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPPVEE----GWEEVFDY 41
             VKNKAPAE+QITAEQLLREAKER+LE++PP  +      EE+ DY
Sbjct:    59 VKNKAPAEVQITAEQLLREAKERELELLPPPPQQKITDEEELNDY 103

 Score = 135 (52.6 bits), Expect = 3.9e-15, Sum P(2) = 3.9e-15
 Identities = 46/165 (27%), Positives = 72/165 (43%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:    91 QQKITDEEELNDYKLRKRK-TFEDNIRKNRTVISNWIKYAQWEESLKEIQRARSIYERAL 149

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   150 DVDYRNITLWLKYAEMEMKNRQVNHARNIWDRAITTLPRVNQ---FWYKYTYMEEMLGNI 206

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER +E     + W +Y  FE+   + D    AR ++ER
Sbjct:   207 AGARQVFERWMEWQPEEQAWHSYINFELRYKEVDR---ARTIYER 248

 Score = 85 (35.0 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
 Identities = 55/217 (25%), Positives = 94/217 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFA-KFEEGQREK--YGDRAGIEDVIVS 176
             EE  G ++GAR+V+ER +E+  EE      +I F  +++E  R +  Y     +   + +
Sbjct:   200 EEMLGNIAGARQVFERWMEWQPEEQAWHS-YINFELRYKEVDRARTIYERFVLVHPDVKN 258

Query:   177 KRKF-QYEE-H---ERARVIYKYALDHIPKDRTAE-IYKAYTIHEK--KYGDRAG-IEDV 227
               K+ ++EE H     AR +Y+ A++    +   E +Y A+   E+  K  +R   I   
Sbjct:   259 WIKYARFEEKHGYFAHARKVYERAVEFFGDEHMDEHLYVAFAKFEENQKEFERVRVIYKY 318

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELES 287
              + +   Q  +E+  N   ++  F   R +ED       R  YE  +   P    A  + 
Sbjct:   319 ALDRISKQEAQELFKNYTIFEKKFGDRRGIEDI-IVSKRRFQYEEEVKANPHNYDAWFDY 377

Query:   288 LL-----GDMERARAIYELAISQPRLDMPELVWKAYI 319
             L       + E  R +YE AI+       +  WK YI
Sbjct:   378 LRLVESDAEAETVREVYERAIANVPPIQEKRHWKRYI 414

 Score = 61 (26.5 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
 Identities = 41/141 (29%), Positives = 62/141 (43%)

Query:   130 RKVYERAVEFFGEENLDEKLFIAFAKFEE--GQREKYGDRAGIEDVIVSKRKFQYEEHER 187
             RK+YE+ +EF G EN     +I FA+ E   G  E+   RA I ++ +S+ +    E   
Sbjct:   506 RKLYEKFLEF-GPENCTS--WIKFAELETILGDIERA--RA-IYELAISQPRLDMPEVLW 559

Query:   188 ARVIYKYALDHIPKDRTAEIYKAY---TIHEKKYGDRAGIEDVIVSKRKF-------QYE 237
                I  + ++    +RT  +Y+     T H K +   A  E   +S RK        Q  
Sbjct:   560 KSYI-DFEIEQEETERTRNLYRRLLQRTQHVKVWISFAQFE---LSSRKEGSLAKCRQIY 615

Query:   238 EEVNSNPNNYDAWFDYLRLLE 258
             EE N    N +   + L LLE
Sbjct:   616 EEANKTMRNCEEKEERLMLLE 636

 Score = 51 (23.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
 Identities = 32/147 (21%), Positives = 64/147 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE +       R +Y R ++         K++I+FA+FE   R K G  A    +     
Sbjct:   565 FEIEQEETERTRNLYRRLLQ----RTQHVKVWISFAQFELSSR-KEGSLAKCRQIYEEAN 619

Query:   179 KFQY---EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQ 235
             K      E+ ER  ++  +        R+ E  +  T+ +K+  D+  + + +  +RK Q
Sbjct:   620 KTMRNCEEKEERLMLLESW--------RSFED-EFGTVSDKERVDKL-MPEKVKKRRKVQ 669

Query:   236 YEEEVNSNPNNYDAWFDYLRLLEDEGN 262
              ++  ++    ++ ++DY+   ED  N
Sbjct:   670 ADDGSDAG---WEEYYDYI-FPEDAAN 692

 Score = 47 (21.6 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
 Identities = 16/51 (31%), Positives = 27/51 (52%)

Query:     9 IQITAE-QLLREAKERDLEIVPPVEEG--WEEVF----DY-IFPEDEAAKP 51
             ++  AE + +RE  ER +  VPP++E   W+       +Y ++ E EA  P
Sbjct:   381 VESDAEAETVREVYERAIANVPPIQEKRHWKRYIYLWVNYALYEELEAKDP 431


>WB|WBGene00019762 [details] [associations]
            symbol:M03F8.3 species:6239 "Caenorhabditis elegans"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0009792 "embryo
            development ending in birth or egg hatching" evidence=IMP]
            [GO:0000003 "reproduction" evidence=IMP] [GO:0018996 "molting
            cycle, collagen and cuticulin-based cuticle" evidence=IMP]
            [GO:0040011 "locomotion" evidence=IMP] [GO:0040007 "growth"
            evidence=IMP] [GO:0002119 "nematode larval development"
            evidence=IMP] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
            GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0018996
            GO:GO:0040011 GO:GO:0000003 GO:GO:0005622 GO:GO:0006396
            Gene3D:1.25.40.10 eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972
            OMA:KFTFAKI GeneTree:ENSGT00550000074931 EMBL:FO080495
            RefSeq:NP_001122979.1 ProteinModelPortal:A9D4S6 SMR:A9D4S6
            STRING:A9D4S6 PaxDb:A9D4S6 EnsemblMetazoa:M03F8.3b GeneID:178979
            KEGG:cel:CELE_M03F8.3 UCSC:M03F8.3a CTD:178979 WormBase:M03F8.3b
            InParanoid:A9D4S6 NextBio:903380 ArrayExpress:A9D4S6 Uniprot:A9D4S6
        Length = 747

 Score = 539 (194.8 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 121/277 (43%), Positives = 181/277 (65%)

Query:   183 EEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240
             ++ +RAR +YK  +D IP K  T A+++  +   E +  D       + + RK      +
Sbjct:   398 KDFDRARQVYKACIDIIPHKTFTFAKVWIMFAHFEIRQLD-------LNAARKIM-GVAI 449

Query:   241 NSNPNN--YDAWFDY-LRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDM 292
                P +  + A+ D  L+L E     D  R+ YE+ + + P +     KFAELE+LLGD 
Sbjct:   450 GKCPKDKLFRAYIDLELQLRE----FDRCRKLYEKFLESSPESSQTWIKFAELETLLGDT 505

Query:   293 ERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYA 352
             +R+RA++ +A+ QP LDMPEL+WKAYIDFE+   E +K R+L+E LL+RT H+KVW++ A
Sbjct:   506 DRSRAVFTIAVQQPALDMPELLWKAYIDFEIACEEHEKARDLYETLLQRTNHIKVWISMA 565

Query:   353 QFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNS 412
             +FE + G+ +    AR+ FERANQ+L+ ++EKEER+MLLEAWKE E + GD E+  ++ +
Sbjct:   566 EFEQTIGNFEG---ARKAFERANQSLE-NAEKEERLMLLEAWKECETKSGDQEALKRVET 621

Query:   413 KLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAK 449
              +PRR KKR +   ++GV+ GWEE FDYIFP+D+AAK
Sbjct:   622 MMPRRVKKRRQIQTEDGVDAGWEEYFDYIFPQDQAAK 658

 Score = 378 (138.1 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
 Identities = 112/277 (40%), Positives = 158/277 (57%)

Query:   111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE-----GQR---- 161
             TY   EL ++E    +  AR VY+R +   G   ++ + +I +AKFEE     G      
Sbjct:   192 TYINFELRYKE----IDRARSVYQRFLHVHG---INVQNWIKYAKFEERNGYIGNARAAY 244

Query:   162 EKYGDRAGIED----VIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHE 215
             EK  +  G ED    V+V+   F+   +EHERAR I+KY LD++P +RT EI+K YT HE
Sbjct:   245 EKAMEYFGEEDINETVLVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHE 304

Query:   216 KKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE-DEGNADLIRETYERAI 274
             KK+G+R GIEDVI+SKRK QYE+ V  N  NYDAWFDYLRLLE +E + + + + YERAI
Sbjct:   305 KKFGERVGIEDVIISKRKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVEDVYERAI 364

Query:   275 ANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL 334
             ANIPP  + + +         R IY L I+    +  ELV K   DF+     R   +  
Sbjct:   365 ANIPPHSYFQEKRYW-----RRYIY-LWINYALYE--ELVAK---DFDRA---RQVYKAC 410

Query:   335 HERLLERT-VHVKVWMNYAQFEMSSGDEDSVSLARRV 370
              + +  +T    KVW+ +A FE+   D   ++ AR++
Sbjct:   411 IDIIPHKTFTFAKVWIMFAHFEIRQLD---LNAARKI 444

 Score = 156 (60.0 bits), Expect = 4.0e-17, Sum P(2) = 4.0e-17
 Identities = 46/187 (24%), Positives = 93/187 (49%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             + + +  +E  ++ +  +   W  Y  +       +  R  ++RAI  +P       K++
Sbjct:   102 IQRARSVFERALDVDHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMPRAMQFWLKYS 161

Query:   284 ELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE-RT 342
              +E ++ ++  AR I+E  I     + PE  W+ YI+FE+   E D+ R +++R L    
Sbjct:   162 YMEEVIENIPGARQIFERWIEW---EPPEQAWQTYINFELRYKEIDRARSVYQRFLHVHG 218

Query:   343 VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHG 402
             ++V+ W+ YA+FE  +G    +  AR  +E+A   ++   E++    +L A+  FE +  
Sbjct:   219 INVQNWIKYAKFEERNG---YIGNARAAYEKA---MEYFGEEDINETVLVAFALFEERQK 272

Query:   403 DDESRAK 409
             + E RA+
Sbjct:   273 EHE-RAR 278

 Score = 134 (52.2 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 25/30 (83%), Positives = 30/30 (100%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPP 30
             VKNKAPA++QITAEQLLREAKER+LE++PP
Sbjct:    23 VKNKAPAQLQITAEQLLREAKERELELIPP 52

 Score = 121 (47.7 bits), Expect = 0.00048, P = 0.00048
 Identities = 36/115 (31%), Positives = 56/115 (48%)

Query:   265 LIRETYERAIANIPP---TKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDF 321
             L+RE  ER +  IPP   TK  + + L     + R  +E  I + R+ +    W  Y  +
Sbjct:    38 LLREAKERELELIPPAPKTKITDPDELKEYQRKKRKEFEDGIRKNRMQLAN--WIKYGKW 95

Query:   322 EVGQGERDKVRELHERLLERTVH--VKVWMNYAQFEMSSGDEDSVSLARRVFERA 374
             E   GE  + R + ER L+   H  + +W+ YA+ EM       ++ AR VF+RA
Sbjct:    96 EESIGEIQRARSVFERALD-VDHRSISIWLQYAEMEMRC---KQINHARNVFDRA 146

 Score = 104 (41.7 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 67/299 (22%), Positives = 125/299 (41%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSK 177
             +EE  G +  AR V+ERA++    ++    +++ +A+ E   ++    R   +  I +  
Sbjct:    95 WEESIGEIQRARSVFERALDV---DHRSISIWLQYAEMEMRCKQINHARNVFDRAITIMP 151

Query:   178 R------KFQYEEH--ER---ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED 226
             R      K+ Y E   E    AR I++  ++  P ++  + Y  + +  K+  DRA    
Sbjct:   152 RAMQFWLKYSYMEEVIENIPGARQIFERWIEWEPPEQAWQTYINFELRYKEI-DRA---- 206

Query:   227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA-----NIPPT- 280
                   +  Y+  ++ +  N   W  Y +  E  G     R  YE+A+      +I  T 
Sbjct:   207 ------RSVYQRFLHVHGINVQNWIKYAKFEERNGYIGNARAAYEKAMEYFGEEDINETV 260

Query:   281 --KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL---- 334
                FA  E    + ERAR I++  +     +  E ++K Y   E   GER  + ++    
Sbjct:   261 LVAFALFEERQKEHERARGIFKYGLDNLPSNRTEEIFKHYTQHEKKFGERVGIEDVIISK 320

Query:   335 ----HERLLERT-VHVKVWMNYAQF-EMSSGDEDSVSLARRVFERANQALKASSEKEER 387
                 +E+++E    +   W +Y +  E    D + V     V+ERA   +   S  +E+
Sbjct:   321 RKTQYEKMVEENGYNYDAWFDYLRLLENEETDREEVE---DVYERAIANIPPHSYFQEK 376

 Score = 102 (41.0 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
 Identities = 39/149 (26%), Positives = 63/149 (42%)

Query:   231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI----ANIPP-TKFAEL 285
             KRK ++E+ +  N      W  Y +  E  G     R  +ERA+     +I    ++AE+
Sbjct:    71 KRK-EFEDGIRKNRMQLANWIKYGKWEESIGEIQRARSVFERALDVDHRSISIWLQYAEM 129

Query:   286 ESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344
             E     +  AR +++ AI+  PR       W  Y   E         R++ ER +E    
Sbjct:   130 EMRCKQINHARNVFDRAITIMPRAMQ---FWLKYSYMEEVIENIPGARQIFERWIEWEPP 186

Query:   345 VKVWMNYAQFEMSSGDEDSVSLARRVFER 373
              + W  Y  FE+   + D    AR V++R
Sbjct:   187 EQAWQTYINFELRYKEIDR---ARSVYQR 212

 Score = 68 (29.0 bits), Expect = 7.5e-08, Sum P(2) = 7.5e-08
 Identities = 25/94 (26%), Positives = 47/94 (50%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS-- 176
             FE+  G   GARK +ERA +       +E+L +  A ++E +  K GD+  ++ V     
Sbjct:   567 FEQTIGNFEGARKAFERANQSLENAEKEERLMLLEA-WKECET-KSGDQEALKRVETMMP 624

Query:   177 ---KRKFQYEEHERARVIYKYALDHI-PKDRTAE 206
                K++ Q +  +     ++   D+I P+D+ A+
Sbjct:   625 RRVKKRRQIQTEDGVDAGWEEYFDYIFPQDQAAK 658


>ZFIN|ZDB-GENE-040426-694 [details] [associations]
            symbol:crnkl1 "crooked neck pre-mRNA splicing
            factor-like 1 (Drosophila)" species:7955 "Danio rerio" [GO:0005622
            "intracellular" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF02184 PROSITE:PS50293 SMART:SM00386
            ZFIN:ZDB-GENE-040426-694 GO:GO:0005622 GO:GO:0006396
            Gene3D:1.25.40.10 GeneTree:ENSGT00550000074931 EMBL:CABZ01008082
            EMBL:CABZ01008083 EMBL:CABZ01008084 IPI:IPI00932828
            Ensembl:ENSDART00000112689 ArrayExpress:E7FGM7 Bgee:E7FGM7
            Uniprot:E7FGM7
        Length = 754

 Score = 537 (194.1 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 115/278 (41%), Positives = 168/278 (60%)

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
             + + ++ ER R +YK  L+ IP  +     K + +    YG +  I    +   +     
Sbjct:   384 ELEVKDPERTRQVYKACLELIPHKKFT-FAKIWLL----YG-QFEIRQKNLQNARRGLGT 437

Query:   239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDME 293
              +   P N   +  Y+ L       D  R+ YE+ +   P       KFAELE++LGD +
Sbjct:   438 AIGKCPKN-KLFKGYIELELQLREFDRCRKLYEKYLEFSPENCTTWIKFAELETILGDTD 496

Query:   294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353
             R+RAI+ELAI QPRLDMPE++WK+YIDFE+ Q E D  R L++RLL+RT HVKVW++YAQ
Sbjct:   497 RSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLYKRLLQRTQHVKVWISYAQ 556

Query:   354 FEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSK 413
             FE+S   ED V   R+V+E AN+ ++   EKEER+MLLE+W+++E + G    + ++   
Sbjct:   557 FELSIDTEDRVQRCRQVYEEANKGMQNCEEKEERLMLLESWRDYEEEFGSFTHKERVRKL 616

Query:   414 LPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPN 451
             LP + KKR K   ++G + GWEE +DYIFPED A +PN
Sbjct:   617 LPEKVKKRRKITAEDGSDAGWEEYYDYIFPEDAANQPN 654

 Score = 414 (150.8 bits), Expect = 8.4e-50, Sum P(2) = 8.4e-50
 Identities = 90/176 (51%), Positives = 119/176 (67%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE-------GQR------EKYG 165
             FE +   V  AR +YE+A+     E    K +I +A FEE       G++      E +G
Sbjct:   190 FELRYKEVDKARSIYEKALVMVHPE---VKNWIKYAHFEEKHGYVARGRKVFERAVEFFG 246

Query:   166 DRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223
             +    E++ V+  +F+   +E ER RVIYKYALD IPK +  E++K YT+ EK++GDR G
Sbjct:   247 EEQVSENLYVAFARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGDRRG 306

Query:   224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             IEDVIVSKR+FQYEEEV +NP+NYDAWFDYLRL+E + +AD +RE YERAIANIPP
Sbjct:   307 IEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANIPP 362

 Score = 170 (64.9 bits), Expect = 6.8e-19, Sum P(2) = 6.8e-19
 Identities = 53/185 (28%), Positives = 88/185 (47%)

Query:   229 VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFA 283
             V + +  YE  ++ +  N   W  Y  +       +  R  ++RAI  +P       K+ 
Sbjct:    96 VQRSRSIYERALDVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQFWYKYT 155

Query:   284 ELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT 342
              +E +LG++   R ++E  +  +P     E  W +YI+FE+   E DK R ++E+ L   
Sbjct:   156 YMEEMLGNIAGCRQVFERWMEWEPE----EQAWHSYINFELRYKEVDKARSIYEKALVM- 210

Query:   343 VH--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
             VH  VK W+ YA FE   G    V+  R+VFERA   ++   E++    L  A+  FE +
Sbjct:   211 VHPEVKNWIKYAHFEEKHG---YVARGRKVFERA---VEFFGEEQVSENLYVAFARFEEK 264

Query:   401 HGDDE 405
               + E
Sbjct:   265 QKEFE 269

 Score = 143 (55.4 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
 Identities = 72/286 (25%), Positives = 124/286 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSKR 178
             EE N +    RK +E  +    +       +I +A++EE  +E    R+  E  + V  R
Sbjct:    56 EELNDYKLKKRKGFEDNIR---KNRTVISNWIKYAQWEESLQEVQRSRSIYERALDVDHR 112

Query:   179 KF----QYEEHE-------RARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
                   +Y E E        AR I+  A+  +P  R  + +  YT  E+  G+ AG   V
Sbjct:   113 NITLWLKYAEMEMKNRQVNHARNIWDRAITILP--RVNQFWYKYTYMEEMLGNIAGCRQV 170

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KF 282
                +R  ++E E         AW  Y+         D  R  YE+A+  + P      K+
Sbjct:   171 F--ERWMEWEPEEQ-------AWHSYINFELRYKEVDKARSIYEKALVMVHPEVKNWIKY 221

Query:   283 AELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341
             A  E   G + R R ++E A+       + E ++ A+  FE  Q E ++VR +++  L+R
Sbjct:   222 AHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRVIYKYALDR 281

Query:   342 TVHVK---VWMNYAQFEMSSGDE---DSVSLARRVFERANQALKAS 381
                 +   ++ NY  FE   GD    + V +++R F+   + +KA+
Sbjct:   282 IPKQQAQELFKNYTVFEKRFGDRRGIEDVIVSKRRFQYEEE-VKAN 326

 Score = 136 (52.9 bits), Expect = 2.9e-64, Sum P(2) = 2.9e-64
 Identities = 26/30 (86%), Positives = 30/30 (100%)

Query:     1 VKNKAPAEIQITAEQLLREAKERDLEIVPP 30
             VKNKAPAE+QITAEQLLREAKER+LE++PP
Sbjct:    17 VKNKAPAEVQITAEQLLREAKERELELLPP 46

 Score = 136 (52.9 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
 Identities = 46/166 (27%), Positives = 74/166 (44%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D+  + D  + KRK  +E+ +  N      W  Y +  E        R  YERA+
Sbjct:    49 KQKITDKEELNDYKLKKRK-GFEDNIRKNRTVISNWIKYAQWEESLQEVQRSRSIYERAL 107

Query:   275 ----ANIPP-TKFAELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGER 328
                  NI    K+AE+E     +  AR I++ AI+  PR++     W  Y   E   G  
Sbjct:   108 DVDHRNITLWLKYAEMEMKNRQVNHARNIWDRAITILPRVNQ---FWYKYTYMEEMLGNI 164

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374
                R++ ER +E     + W +Y  FE+   + D    AR ++E+A
Sbjct:   165 AGCRQVFERWMEWEPEEQAWHSYINFELRYKEVDK---ARSIYEKA 207

 Score = 108 (43.1 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 65/276 (23%), Positives = 120/276 (43%)

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
             + +Y+E ++AR IY+ AL  +  +   + +  Y   E+K+G  A    V     +F  EE
Sbjct:   191 ELRYKEVDKARSIYEKALVMVHPE--VKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEE 248

Query:   239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL-------ESLLGD 291
             +V+ N   Y A   + R  E +   + +R  Y+ A+  IP  +  EL       E   GD
Sbjct:   249 QVSENL--YVA---FARFEEKQKEFERVRVIYKYALDRIPKQQAQELFKNYTVFEKRFGD 303

Query:   292 MERARAIYELAISQPRLDMPELV---------WKAYIDFEVGQGERDKVRELHERLL--- 339
                 R I ++ +S+ R    E V         W  Y+       + D VRE++ER +   
Sbjct:   304 R---RGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVESDADADTVREVYERAIANI 360

Query:   340 ---ERTVH----VKVWMNYAQFE-MSSGDEDSVSLARRVFERANQALKASSEKEERVMLL 391
                +   H    + +W+NYA +E +   D +     R+V++   + +        ++ LL
Sbjct:   361 PPIQEKRHWRRYIYLWINYALYEELEVKDPERT---RQVYKACLELIPHKKFTFAKIWLL 417

Query:   392 EAWKEFEAQHGD-DESRAKLNSKLPRRAKKRV-KTY 425
               + +FE +  +   +R  L + + +  K ++ K Y
Sbjct:   418 --YGQFEIRQKNLQNARRGLGTAIGKCPKNKLFKGY 451

 Score = 101 (40.6 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
 Identities = 64/256 (25%), Positives = 108/256 (42%)

Query:   111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE------GQR--- 161
             T  ++    E +N  V+ AR +++RA+      N   + +  +   EE      G R   
Sbjct:   115 TLWLKYAEMEMKNRQVNHARNIWDRAITILPRVN---QFWYKYTYMEEMLGNIAGCRQVF 171

Query:   162 EKYGDRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG 219
             E++ +    E    S   F+  Y+E ++AR IY+ AL  +  +   + +  Y   E+K+G
Sbjct:   172 ERWMEWEPEEQAWHSYINFELRYKEVDKARSIYEKALVMVHPE--VKNWIKYAHFEEKHG 229

Query:   220 DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
               A    V     +F  EE+V+ N   Y A   + R  E +   + +R  Y+ A+  IP 
Sbjct:   230 YVARGRKVFERAVEFFGEEQVSENL--YVA---FARFEEKQKEFERVRVIYKYALDRIPK 284

Query:   280 TKFAEL-------ESLLGDMERARAIYELAISQPRLDMPELV---------WKAYIDFEV 323
              +  EL       E   GD    R I ++ +S+ R    E V         W  Y+    
Sbjct:   285 QQAQELFKNYTVFEKRFGDR---RGIEDVIVSKRRFQYEEEVKANPHNYDAWFDYLRLVE 341

Query:   324 GQGERDKVRELHERLL 339
                + D VRE++ER +
Sbjct:   342 SDADADTVREVYERAI 357

 Score = 84 (34.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
 Identities = 51/221 (23%), Positives = 95/221 (42%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS--- 176
             EE  G ++G R+V+ER +E+  EE    + + ++  FE   +E    R+  E  +V    
Sbjct:   158 EEMLGNIAGCRQVFERWMEWEPEE----QAWHSYINFELRYKEVDKARSIYEKALVMVHP 213

Query:   177 --KRKFQY----EEH---ERARVIYKYALDHIPKDRTAE-IYKAYTIHEKKYGDRAGIED 226
               K   +Y    E+H    R R +++ A++   +++ +E +Y A+   E+K  +   +  
Sbjct:   214 EVKNWIKYAHFEEKHGYVARGRKVFERAVEFFGEEQVSENLYVAFARFEEKQKEFERVRV 273

Query:   227 VI---VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA 283
             +    + +   Q  +E+  N   ++  F   R +ED       R  YE  +   P    A
Sbjct:   274 IYKYALDRIPKQQAQELFKNYTVFEKRFGDRRGIEDV-IVSKRRFQYEEEVKANPHNYDA 332

Query:   284 ELESLL-----GDMERARAIYELAISQPRLDMPELVWKAYI 319
               + L       D +  R +YE AI+       +  W+ YI
Sbjct:   333 WFDYLRLVESDADADTVREVYERAIANIPPIQEKRHWRRYI 373

 Score = 63 (27.2 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
 Identities = 58/274 (21%), Positives = 106/274 (38%)

Query:   186 ERARVIYKYALDHIPKDRTAEIYKAYT---IHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
             +R+R I++ A+     D    ++K+Y    I +++Y +  G+      KR  Q  + V  
Sbjct:   496 DRSRAIFELAIGQPRLDMPEVLWKSYIDFEIEQEEYDNTRGLY-----KRLLQRTQHVKV 550

Query:   243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-----LESL------LGD 291
                 + ++  +   ++ E      R+ YE A   +   +  E     LES        G 
Sbjct:   551 ----WISYAQFELSIDTEDRVQRCRQVYEEANKGMQNCEEKEERLMLLESWRDYEEEFGS 606

Query:   292 M---ERARAIYELAISQPRL----DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344
                 ER R +    + + R     D  +  W+ Y D+   +   D   + + +LL     
Sbjct:   607 FTHKERVRKLLPEKVKKRRKITAEDGSDAGWEEYYDYIFPE---DAANQPNLKLLAMA-- 661

Query:   345 VKVWMNYAQFEMSSGDE--DSVSLARRVFERANQALKASSEKEERVMLL---EAWKEFEA 399
              K+W    Q E    DE  D      +       A + S E EE+       +A KE++ 
Sbjct:   662 -KMWKKQQQQEEEDDDEEEDENDKEEQQVPEGKDA-QESPEAEEQEPAAGGEQAEKEYDD 719

Query:   400 QHGDDESRAKLNSKLPRRAKKRVKT-YNDEGVEE 432
             +  +DES +  +S       ++ KT +N    E+
Sbjct:   720 RDDEDESSSSSSSDSESDEDQKDKTEHNKPDTEQ 753

 Score = 60 (26.2 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
 Identities = 43/195 (22%), Positives = 78/195 (40%)

Query:   130 RKVYERAVEFFGEENLD-EKLFIAFAKFEEGQREKYGDRAGIEDVI--VSKRKF------ 180
             R+VY+  +E    +     K+++ + +FE  Q+     R G+   I    K K       
Sbjct:   394 RQVYKACLELIPHKKFTFAKIWLLYGQFEIRQKNLQNARRGLGTAIGKCPKNKLFKGYIE 453

Query:   181 ---QYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD--RA-GIEDVIVSKRKF 234
                Q  E +R R +Y+  L+  P++ T  I  A    E   GD  R+  I ++ + + + 
Sbjct:   454 LELQLREFDRCRKLYEKYLEFSPENCTTWIKFAEL--ETILGDTDRSRAIFELAIGQPRL 511

Query:   235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLG 290
                E +         W  Y+    ++   D  R  Y+R +      K    +A+ E  + 
Sbjct:   512 DMPEVL---------WKSYIDFEIEQEEYDNTRGLYKRLLQRTQHVKVWISYAQFELSID 562

Query:   291 D---MERARAIYELA 302
                 ++R R +YE A
Sbjct:   563 TEDRVQRCRQVYEEA 577

 Score = 42 (19.8 bits), Expect = 2.3e-54, Sum P(2) = 2.3e-54
 Identities = 7/17 (41%), Positives = 12/17 (70%)

Query:    17 LREAKERDLEIVPPVEE 33
             +RE  ER +  +PP++E
Sbjct:   349 VREVYERAIANIPPIQE 365


>DICTYBASE|DDB_G0278819 [details] [associations]
            symbol:DDB_G0278819 "HAT repeat-containing protein"
            species:44689 "Dictyostelium discoideum" [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005681
            "spliceosomal complex" evidence=IEA;ISS] [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
            evidence=IC] [GO:0000245 "spliceosomal complex assembly"
            evidence=ISS] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005737 "cytoplasm"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0016607
            "nuclear speck" evidence=IEA] [GO:0044351 "macropinocytosis"
            evidence=RCA] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
            dictyBase:DDB_G0278819 GO:GO:0005737 GenomeReviews:CM000152_GR
            GO:GO:0016607 GO:GO:0005681 GO:GO:0003723 Gene3D:1.25.40.10
            EMBL:AAFI02000024 GO:GO:0000245 eggNOG:NOG327505 KO:K12869
            OMA:KFTFAKI RefSeq:XP_641986.1 ProteinModelPortal:Q54XP4
            STRING:Q54XP4 PRIDE:Q54XP4 EnsemblProtists:DDB0233480
            GeneID:8621718 KEGG:ddi:DDB_G0278819 ProtClustDB:CLSZ2729102
            Uniprot:Q54XP4
        Length = 705

 Score = 357 (130.7 bits), Expect = 4.5e-47, Sum P(3) = 4.5e-47
 Identities = 86/217 (39%), Positives = 123/217 (56%)

Query:   117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE--G---------QR--EK 163
             L FE++       R ++E+ +       +  K +I + KFEE  G         QR  E 
Sbjct:   183 LKFEQRLKLFENTRLIFEKYI--LVHPYI--KTWIKYTKFEERLGNIENARTIFQRAIEF 238

Query:   164 YGDRAGIEDVIVSKRKFQ--YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221
              G+    E + ++  KF+  Y+E ERARVIYKYA+DH+PK R  +++  +T  EK++GDR
Sbjct:   239 LGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHGDR 298

Query:   222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281
              GIEDV++ K++FQYEEE+  N  NYD WFDYL++ E  G  +  RE YER+I N+PPT 
Sbjct:   299 IGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDYLKMEEINGEIEKTREIYERSIGNLPPTN 358

Query:   282 --------------FAELESLLG-DMERARAIYELAI 303
                           +A  E L+  DMERAR++Y   I
Sbjct:   359 EKKHWKRYIYLWINYALFEELISKDMERARSVYSECI 395

 Score = 273 (101.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
 Identities = 70/187 (37%), Positives = 108/187 (57%)

Query:   183 EEHERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240
             ++ ERAR +Y   +  IP K+ + ++I+  Y   E        I  + + K +  Y + +
Sbjct:   382 KDMERARSVYSECIKLIPHKEFSFSKIWILYANFE--------IRQLNLDKARLIYGQAI 433

Query:   241 NSNPNNYDAWFD-YLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDMER 294
               NP +    FD Y+ L  + GN D +R  YE+ +  +P       KFA+LE+ LG+  R
Sbjct:   434 GRNPKS--KIFDQYIHLEIELGNFDRVRTLYEKYLEIMPDNCDAWCKFAQLETELGETVR 491

Query:   295 ARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQF 354
             ARAI+ELAI QP LD PE+VWK +ID E+   + D V++L+ +LLE+T HVKVW+ + +F
Sbjct:   492 ARAIFELAIQQPNLDRPEVVWKDFIDSEIQLKQFDFVKQLYRKLLEKTNHVKVWIGFIKF 551

Query:   355 EMSSGDE 361
               S  D+
Sbjct:   552 VHSIKDK 558

 Score = 158 (60.7 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
 Identities = 70/279 (25%), Positives = 124/279 (44%)

Query:   167 RAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIED 226
             +A  + VI  + + + +   R R  Y+  L    K  TA IY  Y   E+   D      
Sbjct:    40 KAPPKQVITDQEELE-DYRLRKRQQYESLLGRNRK--TAAIYIKYAAWEESQKDLTRARS 96

Query:   227 VIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----K 281
             V   +R    +  +   P     W  Y  +     N +L R  ++RA+  +P       K
Sbjct:    97 VF--ERFLDIDHRI---PT---VWIKYAEMEMKNKNINLARNIWDRAVCLLPRVSQLWFK 148

Query:   282 FAELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
             +  +E +LG+   ARAI+E  +  +P    P+  W +Y+ FE      +  R + E+ + 
Sbjct:   149 YTFMEDMLGNYPAARAIFERWMQWKPE---PQ-AWNSYLKFEQRLKLFENTRLIFEKYIL 204

Query:   341 RTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
                ++K W+ Y +FE   G+ ++   AR +F+RA + L      E+   L  A+ +FE +
Sbjct:   205 VHPYIKTWIKYTKFEERLGNIEN---ARTIFQRAIEFLGEDGNDEQ---LFIAFAKFEEK 258

Query:   401 HGDDESRAKLNSK-----LPR-RAKKRVKTYNDEGVEEG 433
             + + E RA++  K     +P+ RAK    T+ +   + G
Sbjct:   259 YKEIE-RARVIYKYAIDHVPKSRAKDLFDTFTNFEKQHG 296

 Score = 117 (46.2 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
 Identities = 43/181 (23%), Positives = 79/181 (43%)

Query:   250 WFDYLRLLEDEGNADLIRETYERAIANIPPT--------KFAELESLLGDMERARAIYEL 301
             W  Y +  E  GN +  R  ++RAI  +            FA+ E    ++ERAR IY+ 
Sbjct:   212 WIKYTKFEERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKY 271

Query:   302 AISQ-PRLDMPELVWKAYIDFEVGQGERDKVREL---------HERLLERTVHVKVWMNY 351
             AI   P+    +L +  + +FE   G+R  + ++          E + + + +  +W +Y
Sbjct:   272 AIDHVPKSRAKDL-FDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNSKNYDIWFDY 330

Query:   352 AQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKE---FEAQHGDDESRA 408
              + E  +G+   +   R ++ER+   L  ++EK+     +  W     FE     D  RA
Sbjct:   331 LKMEEINGE---IEKTREIYERSIGNLPPTNEKKHWKRYIYLWINYALFEELISKDMERA 387

Query:   409 K 409
             +
Sbjct:   388 R 388

 Score = 116 (45.9 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
 Identities = 67/282 (23%), Positives = 120/282 (42%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-VSKR 178
             EE   +    R+ YE      G       ++I +A +EE Q++    R+  E  + +  R
Sbjct:    51 EELEDYRLRKRQQYE---SLLGRNRKTAAIYIKYAAWEESQKDLTRARSVFERFLDIDHR 107

Query:   179 K----FQYEEHER-------ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
                   +Y E E        AR I+  A+  +P  R ++++  YT  E   G+      +
Sbjct:   108 IPTVWIKYAEMEMKNKNINLARNIWDRAVCLLP--RVSQLWFKYTFMEDMLGNYPAARAI 165

Query:   228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP-TKFAELE 286
                +R  Q++ E  +  N+Y  +   L+L E   N  LI E Y      I    K+ + E
Sbjct:   166 F--ERWMQWKPEPQAW-NSYLKFEQRLKLFE---NTRLIFEKYILVHPYIKTWIKYTKFE 219

Query:   287 SLLGDMERARAIYELAISQPRLD-MPELVWKAYIDFEVGQGERDKVRELHERLLERTVHV 345
               LG++E AR I++ AI     D   E ++ A+  FE    E ++ R +++  ++     
Sbjct:   220 ERLGNIENARTIFQRAIEFLGEDGNDEQLFIAFAKFEEKYKEIERARVIYKYAIDHVPKS 279

Query:   346 K---VWMNYAQFEMSSGDE---DSVSLARRVFERANQALKAS 381
             +   ++  +  FE   GD    + V L ++ F+   +  K S
Sbjct:   280 RAKDLFDTFTNFEKQHGDRIGIEDVVLGKKRFQYEEEIKKNS 321

 Score = 106 (42.4 bits), Expect = 4.5e-47, Sum P(3) = 4.5e-47
 Identities = 29/95 (30%), Positives = 48/95 (50%)

Query:   282 FAELESLLG-DMERARAIYELAISQ-PRLDMP-ELVWKAYIDFEVGQGERDKVRELHERL 338
             +A  E L+  DMERAR++Y   I   P  +     +W  Y +FE+ Q   DK R ++ + 
Sbjct:   373 YALFEELISKDMERARSVYSECIKLIPHKEFSFSKIWILYANFEIRQLNLDKARLIYGQA 432

Query:   339 LERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             + R    K++  Y   E+  G+ D V   R ++E+
Sbjct:   433 IGRNPKSKIFDQYIHLEIELGNFDRV---RTLYEK 464

 Score = 81 (33.6 bits), Expect = 4.5e-47, Sum P(3) = 4.5e-47
 Identities = 23/45 (51%), Positives = 27/45 (60%)

Query:     1 VKNKAPAEIQITAEQLLREAKERD--LEIVPP--VEEGWEEVFDY 41
             VKNK+ A +QITAEQ+LR A E    L   PP  V    EE+ DY
Sbjct:    12 VKNKSAAPVQITAEQILRVAHENQQTLPKAPPKQVITDQEELEDY 56


>TAIR|locus:2089999 [details] [associations]
            symbol:AT3G13210 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM;IEA] [GO:0006396 "RNA processing" evidence=IEA;ISS]
            [GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR003107
            InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF02184 Pfam:PF05843 PROSITE:PS50293 SMART:SM00386
            GO:GO:0005634 EMBL:CP002686 GO:GO:0006397 Gene3D:1.25.40.10
            IPI:IPI00519685 RefSeq:NP_187927.1 UniGene:At.53288
            ProteinModelPortal:F4JC74 SMR:F4JC74 EnsemblPlants:AT3G13210.1
            GeneID:820511 KEGG:ath:AT3G13210 OMA:NEARNVW Uniprot:F4JC74
        Length = 657

 Score = 408 (148.7 bits), Expect = 3.9e-46, Sum P(2) = 3.9e-46
 Identities = 107/286 (37%), Positives = 153/286 (53%)

Query:   183 EEHERARVIYKYALDHIPKDRT--AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEV 240
             E+ E  R +Y+  L  IP  +   A+I+     HE +  +  G   ++ +         +
Sbjct:   356 EDVESTRDVYRACLKLIPHSKFSFAKIWLLAAQHEIRQLNLTGARQILGNA--------I 407

Query:   241 NSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDMERA 295
                P +   +  Y+ +     N D  R+ YER +   P       K+AE E  L + ER 
Sbjct:   408 GKAPKD-KIFKKYIEIELQLRNIDRCRKLYERYLEWSPGNCYAWRKYAEFEMSLAETERT 466

Query:   296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFE 355
             RAI+ELAISQP LDMPEL+WK YIDFE+ +GE ++ R L+ERLL+RT H KVW+++A+FE
Sbjct:   467 RAIFELAISQPALDMPELLWKTYIDFEISEGELERTRALYERLLDRTKHCKVWVDFAKFE 526

Query:   356 MSSG----DE----------DSVSLARRVFERANQALKASSE--KEERVMLLEAWKEFEA 399
              S+     DE          D +  AR +F+RAN   K S+   KEER MLLE W   E 
Sbjct:   527 ASAAEHKEDEEEEDAIERKKDGIKRAREIFDRANTYNKDSTPELKEERAMLLEDWLNMET 586

Query:   400 QHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED 445
               G       + SKLP++ KKR  +  ++G  E +EE  DY+FPE+
Sbjct:   587 GFGKLGDVRVVQSKLPKKVKKRKLSSREDGCTE-YEEYTDYLFPEE 631

 Score = 312 (114.9 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
 Identities = 72/171 (42%), Positives = 97/171 (56%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE--EGQRE---KYGDRAGIEDV 173
             FE +   +  AR +YER V    + +     +I +AKFE   GQ E   K  +RA  E  
Sbjct:   167 FELKYNEIECARSIYERFVLCHPKVSA----YIRYAKFEMKHGQVELAMKVFERAKKELA 222

Query:   174 IVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRK 233
                + +  +         YK+ALD IPK R   +Y  +   EK+ GD+ GIED I+ KR+
Sbjct:   223 DDEEAEILFVAFAEFEEQYKFALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRR 282

Query:   234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE 284
              QYE+EV  NP NYD+WFD++RL E  GN D IRE YERA+AN+PP +  E
Sbjct:   283 CQYEDEVRKNPLNYDSWFDFVRLEETVGNKDRIREIYERAVANVPPPEAQE 333

 Score = 188 (71.2 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
 Identities = 55/187 (29%), Positives = 90/187 (48%)

Query:   220 DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP 279
             D A + D  + +RK ++E+++     N   W  Y        + +  R  ++RA++ +P 
Sbjct:    65 DSAELSDYRLRRRK-EFEDQIRRARLNTQVWVKYADFEMKNKSVNEARNVWDRAVSLLPR 123

Query:   280 T-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVREL 334
                   KF  +E  LG++  AR I E  I        +  W  +I FE+   E +  R +
Sbjct:   124 VDQLWYKFIHMEEKLGNIAGARQILERWI---HCSPDQQAWLCFIKFELKYNEIECARSI 180

Query:   335 HERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAW 394
             +ER +     V  ++ YA+FEM  G    V LA +VFERA + L   ++ EE  +L  A+
Sbjct:   181 YERFVLCHPKVSAYIRYAKFEMKHGQ---VELAMKVFERAKKEL---ADDEEAEILFVAF 234

Query:   395 KEFEAQH 401
              EFE Q+
Sbjct:   235 AEFEEQY 241

 Score = 102 (41.0 bits), Expect = 3.9e-46, Sum P(2) = 3.9e-46
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKER-DLEIVPP 30
             VKNK PA IQITAEQ+LREA+ER + E  PP
Sbjct:    29 VKNKTPAPIQITAEQILREARERQEAEFRPP 59

 Score = 96 (38.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
 Identities = 53/219 (24%), Positives = 91/219 (41%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179
             EE+ G ++GAR++ ER +      + D++ ++ F KFE    E    R+  E  ++    
Sbjct:   135 EEKLGNIAGARQILERWIHC----SPDQQAWLCFIKFELKYNEIECARSIYERFVLC--- 187

Query:   180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKF--QYE 237
                  H +     +YA   +   +     K +   +K+  D    E + V+  +F  QY+
Sbjct:   188 -----HPKVSAYIRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEEQYK 242

Query:   238 EEVNSNP-----NNYDAWFDYLRLLED-EGNADLI----RETYERAIANIPPT-----KF 282
               ++  P     N Y  +  + +   D EG  D I    R  YE  +   P        F
Sbjct:   243 FALDQIPKGRAENLYSKFVAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDF 302

Query:   283 AELESLLGDMERARAIYELAISQ--PRLDMPELVWKAYI 319
               LE  +G+ +R R IYE A++   P     +  W+ YI
Sbjct:   303 VRLEETVGNKDRIREIYERAVANVPPPEAQEKRYWQRYI 341

 Score = 87 (35.7 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
 Identities = 78/330 (23%), Positives = 138/330 (41%)

Query:   114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYG-DRA--GI 170
             +R   FE ++G V  A KV+ERA +   ++   E LF+AFA+FEE  + K+  D+   G 
Sbjct:   195 IRYAKFEMKHGQVELAMKVFERAKKELADDEEAEILFVAFAEFEE--QYKFALDQIPKGR 252

Query:   171 EDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVS 230
              + + SK    +E+    +   + A+    + +  +  +   ++   + D   +E+ + +
Sbjct:   253 AENLYSKF-VAFEKQNGDKEGIEDAIIGKRRCQYEDEVRKNPLNYDSWFDFVRLEETVGN 311

Query:   231 KRKFQ--YEEEVNSNP----------NNYD-AWFDYLRLLED-EGNADLIRETYERAIAN 276
             K + +  YE  V + P            Y   W +Y    E    + +  R+ Y   +  
Sbjct:   312 KDRIREIYERAVANVPPPEAQEKRYWQRYIYLWINYAFFAEMVTEDVESTRDVYRACLKL 371

Query:   277 IPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYID--FEVGQGERDKVREL 334
             IP +KF+  +  L  +     I +L ++  R  +   + KA  D  F+       ++R +
Sbjct:   372 IPHSKFSFAKIWL--LAAQHEIRQLNLTGARQILGNAIGKAPKDKIFKKYIEIELQLRNI 429

Query:   335 HE--RLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392
                 +L ER +       YA  + +   E  +SLA     RA   L  S    +   LL 
Sbjct:   430 DRCRKLYERYLEWSPGNCYAWRKYA---EFEMSLAETERTRAIFELAISQPALDMPELL- 485

Query:   393 AWK---EFEAQHGDDESRAKLNSKLPRRAK 419
              WK   +FE   G+ E    L  +L  R K
Sbjct:   486 -WKTYIDFEISEGELERTRALYERLLDRTK 514

 Score = 76 (31.8 bits), Expect = 2.5e-05, Sum P(2) = 2.5e-05
 Identities = 41/151 (27%), Positives = 63/151 (41%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE   G +   R +YER ++         K+++ FAKFE    E   D    ED I  K+
Sbjct:   492 FEISEGELERTRALYERLLD----RTKHCKVWVDFAKFEASAAEHKEDEEE-EDAIERKK 546

Query:   179 ---KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK---KYGDRAGIEDVI---V 229
                K   E  +RA    K +   + ++R A + + +   E    K GD   ++  +   V
Sbjct:   547 DGIKRAREIFDRANTYNKDSTPELKEER-AMLLEDWLNMETGFGKLGDVRVVQSKLPKKV 605

Query:   230 SKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260
              KRK    E+       Y+ + DYL   E E
Sbjct:   606 KKRKLSSRED---GCTEYEEYTDYLFPEESE 633


>POMBASE|SPBC31F10.11c [details] [associations]
            symbol:cwf4 "complexed with Cdc5 protein Cwf4"
            species:4896 "Schizosaccharomyces pombe" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
            [GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IC]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF02184 SMART:SM00386 PomBase:SPBC31F10.11c EMBL:CU329671
            GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0007049
            Gene3D:1.25.40.10 GO:GO:0045292 eggNOG:NOG327505 KO:K12869
            HOGENOM:HOG000207972 OMA:KFTFAKI OrthoDB:EOG4NKG44 EMBL:AF254353
            PIR:T40214 RefSeq:NP_596573.1 ProteinModelPortal:P87312
            IntAct:P87312 STRING:P87312 EnsemblFungi:SPBC31F10.11c.1
            GeneID:2540328 KEGG:spo:SPBC31F10.11c NextBio:20801457
            Uniprot:P87312
        Length = 674

 Score = 384 (140.2 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
 Identities = 102/280 (36%), Positives = 158/280 (56%)

Query:   186 ERARVIYKYALDHIP-KDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243
             +RAR +Y+ AL  IP K  T A+++  Y + E +         + V+++       +   
Sbjct:   380 DRARKVYQEALKLIPHKKFTFAKLWLMYAMFELRQ------RKIDVARKTLGRALGMCPK 433

Query:   244 PNNYDAWFDYLRLLEDEGNADLIRETYERAI-----ANIPPTKFAELESLLGDMERARAI 298
             P  +  + ++   ++     D  R  YE+ I     A  P   +A LE+ LGD +RARA+
Sbjct:   434 PKLFRGYIEFEDAIKQ---FDRCRILYEKWILYDPEACAPWLGYAALETKLGDSDRARAL 490

Query:   299 YELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSS 358
             Y LA++QP L+ PELVWKAYIDFE  + E  K R ++++LL    HVKVW+++A FE++ 
Sbjct:   491 YNLAVNQPILETPELVWKAYIDFEFEEMEYGKARSIYQQLLRTAPHVKVWISFANFEIAH 550

Query:   359 GDED-------------SVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
              ++D             +V  AR VFE A   L+    KEERV+LLEAWK+FEA HG ++
Sbjct:   551 LEDDDEEPPNEEVASPTAVVRARNVFENALAHLRQQGLKEERVVLLEAWKQFEAMHGTED 610

Query:   406 SRAKLNSKLPRRAKKRVKTYNDEGVEEG-WEEVFDYIFPE 444
             +R  ++S +P+  KKR +      +E+G +EE  DY+FP+
Sbjct:   611 TRKHVSSLMPQVVKKRRR------LEDGSFEEYLDYLFPD 644

 Score = 279 (103.3 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 47/106 (44%), Positives = 75/106 (70%)

Query:   173 VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232
             +  +K + + +E+ERAR I+KYA+D +P+ ++ E+YK YT  EK++GD  G+E  ++ KR
Sbjct:   245 IAFAKFEIRQKEYERARTIFKYAIDFMPRSKSMELYKEYTHFEKQFGDHLGVESTVLDKR 304

Query:   233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + QYE+ +  +P +YD W D L+L E  G+ + IRETYE+AIA +P
Sbjct:   305 RLQYEKLLKDSPYDYDTWLDLLKLEESAGDINTIRETYEKAIAKVP 350

 Score = 164 (62.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
 Identities = 91/345 (26%), Positives = 149/345 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE +      AR +++ A++F       E L+  +  FE+    ++GD  G+E  ++ KR
Sbjct:   250 FEIRQKEYERARTIFKYAIDFMPRSKSME-LYKEYTHFEK----QFGDHLGVESTVLDKR 304

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
             + QYE     +++     D+   D   ++ K     E+  GD   I +    K   +  E
Sbjct:   305 RLQYE-----KLLKDSPYDY---DTWLDLLKL----EESAGDINTIRETY-EKAIAKVPE 351

Query:   239 EVNSNP-NNYD-AWFDYLRLLE-DEGNADLIRETYERAIANIPPTKF--AELESLLGDME 293
              V  N    Y   W +Y    E D  + D  R+ Y+ A+  IP  KF  A+L  +    E
Sbjct:   352 VVEKNAWRRYVYIWLNYCLFEEIDVKDVDRARKVYQEALKLIPHKKFTFAKLWLMYAMFE 411

Query:   294 -RARAIYELAISQPR-LDM---PELVWKAYIDFEVGQGERDKVRELHER-LLERTVHVKV 347
              R R I     +  R L M   P+L ++ YI+FE    + D+ R L+E+ +L        
Sbjct:   412 LRQRKIDVARKTLGRALGMCPKPKL-FRGYIEFEDAIKQFDRCRILYEKWILYDPEACAP 470

Query:   348 WMNYAQFEMSSGDEDSVSLARRVFERA-NQALKASSEKEERVMLLEAWKEFEAQHGDDES 406
             W+ YA  E   GD D    AR ++  A NQ +  + E     ++ +A+ +FE +  +   
Sbjct:   471 WLGYAALETKLGDSDR---ARALYNLAVNQPILETPE-----LVWKAYIDFEFEEMEYGK 522

Query:   407 RAKLNSKLPRRAKKRVKTY-NDEGVEEGWEEVFDYIFPEDEAAKP 450
                +  +L R A   VK + +    E    E  D   P +E A P
Sbjct:   523 ARSIYQQLLRTAP-HVKVWISFANFEIAHLEDDDEEPPNEEVASP 566

 Score = 137 (53.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
 Identities = 48/203 (23%), Positives = 94/203 (46%)

Query:   214 HEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERA 273
             H  +YG    ++    ++ +  +E  ++ +      W  Y+       N +  R  ++RA
Sbjct:    72 HWMRYGQWE-LDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRNINHARNLFDRA 130

Query:   274 IANIPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGER 328
             +  +P       K+  +E +LG++   R ++E  +   + +  E  W +YI  E    E 
Sbjct:   131 VTQLPRVDKLWYKYVYMEEMLGNITGCRQVFERWL---KWEPDENCWMSYIRMERRYHEN 187

Query:   329 DKVRELHERLLERTVHVKV--WMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE 386
             ++ R ++ER +   VH +V  W+ +A+FE   G+  +V   R+V+  A  AL       E
Sbjct:   188 ERARGIYERFV--VVHPEVTNWLRWARFEEECGNAANV---RQVYLAAIDAL-GQEFLNE 241

Query:   387 RVMLLEAWKEFEAQHGDDESRAK 409
             R  +  A+ +FE +  + E RA+
Sbjct:   242 RFFI--AFAKFEIRQKEYE-RAR 261

 Score = 128 (50.1 bits), Expect = 7.2e-05, P = 7.2e-05
 Identities = 37/113 (32%), Positives = 60/113 (53%)

Query:   265 LIRETYERA-IANIPPT-KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFE 322
             L+RE  ER  +A +PP     +LE L     R R  +E AI + RL M    W  Y  +E
Sbjct:    23 LLREAVERQDVAFVPPKINITDLEELQEFQGRKRKEFEDAIRRNRLAMGH--WMRYGQWE 80

Query:   323 VGQGERDKVRELHERLLE-RTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERA 374
             + Q E  + R + ER L+  + ++ +W+ Y + EM + +   ++ AR +F+RA
Sbjct:    81 LDQKEFARARSVFERALDVDSTYIPLWLKYIECEMKNRN---INHARNLFDRA 130

 Score = 113 (44.8 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
 Identities = 40/149 (26%), Positives = 68/149 (45%)

Query:   231 KRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI----ANIPP-TKFAEL 285
             KRK ++E+ +  N      W  Y +   D+      R  +ERA+      IP   K+ E 
Sbjct:    55 KRK-EFEDAIRRNRLAMGHWMRYGQWELDQKEFARARSVFERALDVDSTYIPLWLKYIEC 113

Query:   286 ESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344
             E    ++  AR +++ A++Q PR+D    +W  Y+  E   G     R++ ER L+    
Sbjct:   114 EMKNRNINHARNLFDRAVTQLPRVDK---LWYKYVYMEEMLGNITGCRQVFERWLKWEPD 170

Query:   345 VKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                WM+Y + E    + +    AR ++ER
Sbjct:   171 ENCWMSYIRMERRYHENER---ARGIYER 196

 Score = 109 (43.4 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
 Identities = 55/231 (23%), Positives = 100/231 (43%)

Query:   183 EEHERARVIYKYALDHIPKDRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241
             +E  RAR +++ ALD    D T   ++  Y   E K  +        ++  +  ++  V 
Sbjct:    84 KEFARARSVFERALD---VDSTYIPLWLKYIECEMKNRN--------INHARNLFDRAVT 132

Query:   242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK----FAELESLLGDMERARA 297
               P     W+ Y+ + E  GN    R+ +ER +   P       +  +E    + ERAR 
Sbjct:   133 QLPRVDKLWYKYVYMEEMLGNITGCRQVFERWLKWEPDENCWMSYIRMERRYHENERARG 192

Query:   298 IYELAISQPRLDMPELV-WKAYIDFEVGQGERDKVRELH----ERLLERTVHVKVWMNYA 352
             IYE  +    +  PE+  W  +  FE   G    VR+++    + L +  ++ + ++ +A
Sbjct:   193 IYERFV----VVHPEVTNWLRWARFEEECGNAANVRQVYLAAIDALGQEFLNERFFIAFA 248

Query:   353 QFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGD 403
             +FE+   + +    AR +F+ A   +  S   E    L + +  FE Q GD
Sbjct:   249 KFEIRQKEYER---ARTIFKYAIDFMPRSKSME----LYKEYTHFEKQFGD 292

 Score = 101 (40.6 bits), Expect = 3.6e-43, Sum P(2) = 3.6e-43
 Identities = 23/31 (74%), Positives = 25/31 (80%)

Query:     1 VKNKAPAEIQITAEQLLREAKER-DLEIVPP 30
             VKNK PA IQI+AEQLLREA ER D+  VPP
Sbjct:     8 VKNKNPAPIQISAEQLLREAVERQDVAFVPP 38


>TAIR|locus:2152965 [details] [associations]
            symbol:AT5G41770 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
            GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 KO:K12869 OMA:KFTFAKI
            IPI:IPI00530971 RefSeq:NP_198992.2 UniGene:At.9341
            ProteinModelPortal:F4JZX8 SMR:F4JZX8 PRIDE:F4JZX8
            EnsemblPlants:AT5G41770.1 GeneID:834182 KEGG:ath:AT5G41770
            Uniprot:F4JZX8
        Length = 705

 Score = 367 (134.2 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
 Identities = 82/178 (46%), Positives = 109/178 (61%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE-------------EGQREKYG 165
             FE +   +  AR +YER V    + +     +I +AKFE             E   EK  
Sbjct:   202 FELRYNEIERARTIYERFVLCHPKVSA----YIRYAKFEMKGGEVARCRSVYERATEKLA 257

Query:   166 DRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAG 223
             D    E + V+  +F+   +E ERAR IYK+ALDHIPK R  ++Y+ +   EK+YGD+ G
Sbjct:   258 DDEEAEILFVAFAEFEERCKEVERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEG 317

Query:   224 IEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281
             IED IV KR+FQYE+EV  +P+NYD+WFDY+RL E  GN D IRE YERAIAN+PP +
Sbjct:   318 IEDAIVGKRRFQYEDEVRKSPSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAE 375

 Score = 304 (112.1 bits), Expect = 4.7e-35, Sum P(2) = 4.7e-35
 Identities = 81/237 (34%), Positives = 128/237 (54%)

Query:   133 YERAVEFFGEENLDEKLFI-AFAKFEEGQREKYGDRAGIEDVIVSK-RKFQYEEHERARV 190
             Y R  E  G ++   +++  A A     + ++Y  R     +  +   + + E+ ER R 
Sbjct:   347 YVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIETEDIERTRD 406

Query:   191 IYKYALDHIPKDRT--AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYD 248
             +Y+  L  IP  +   A+I+      E +  +  G   ++ +         +   P +  
Sbjct:   407 VYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNA--------IGKAPKD-K 457

Query:   249 AWFDYLRLLEDEGNADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAI 303
              +  Y+ +    GN D  R+ YER +   P      +K+AELE  L + ERARAI+ELAI
Sbjct:   458 IFKKYIEIELQLGNMDRCRKLYERYLEWSPENCYAWSKYAELERSLVETERARAIFELAI 517

Query:   304 SQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD 360
             SQP LDMPEL+WKAYIDFE+ +GE ++ R L+ERLL+RT H KVW+++A+FE S+ +
Sbjct:   518 SQPALDMPELLWKAYIDFEISEGELERTRALYERLLDRTKHYKVWVSFAKFEASAAE 574

 Score = 200 (75.5 bits), Expect = 1.4e-19, Sum P(2) = 1.4e-19
 Identities = 65/223 (29%), Positives = 102/223 (45%)

Query:   232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA----NIPPT---KFAE 284
             RK  YE  +  +P N  AW  Y  L       +  R  +E AI+    ++P      + +
Sbjct:   476 RKL-YERYLEWSPENCYAWSKYAELERSLVETERARAIFELAISQPALDMPELLWKAYID 534

Query:   285 LESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344
              E   G++ER RA+YE  + + +      VW ++  FE    E ++     E   E  + 
Sbjct:   535 FEISEGELERTRALYERLLDRTK---HYKVWVSFAKFEASAAELEEDENEDEDQEEDVIE 591

Query:   345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE--KEERVMLLEAWKEFEAQHG 402
              K              +D +  AR +F+RAN   K S+   KEER  LLE W   E+  G
Sbjct:   592 HK--------------KDCIKRARAIFDRANTYYKDSTPELKEERATLLEDWLNMESSFG 637

Query:   403 DDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED 445
             +    + + SKLP++ KKR     ++G  E +EE  DY++PE+
Sbjct:   638 NLGDVSIVQSKLPKKLKKRKAITREDGSTE-YEEYIDYLYPEE 679

 Score = 174 (66.3 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
 Identities = 66/235 (28%), Positives = 111/235 (47%)

Query:   236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLG 290
             +E  +  +  N+  W  Y          +  R  ++RA+  +P       K+  +E +LG
Sbjct:   115 WERAIEGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQLWYKYIHMEEILG 174

Query:   291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350
             ++  AR I+E  +        +  W ++I FE+   E ++ R ++ER +     V  ++ 
Sbjct:   175 NIAGARQIFERWMDW---SPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPKVSAYIR 231

Query:   351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410
             YA+FEM  G+   V+  R V+ERA + L   ++ EE  +L  A+ EFE +  + E RA+ 
Sbjct:   232 YAKFEMKGGE---VARCRSVYERATEKL---ADDEEAEILFVAFAEFEERCKEVE-RARF 284

Query:   411 NSK-----LPR-RA----KKRV---KTYND-EGVEEG--WEEVFDYIFPEDEAAK 449
               K     +P+ RA    +K V   K Y D EG+E+    +  F Y   EDE  K
Sbjct:   285 IYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQY---EDEVRK 336

 Score = 129 (50.5 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 40/165 (24%), Positives = 78/165 (47%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + D  + +RK ++E+++     N   W  Y +  E + +    R  +ERAI
Sbjct:    61 KQKITDSTELSDYRLRRRK-EFEDQIRRARWNIQVWVKYAQWEESQKDYARARSVWERAI 119

Query:   275 ANIPPT-----KFAELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGER 328
                        K+AE E     +  AR +++ A++  PR+D    +W  YI  E   G  
Sbjct:   120 EGDYRNHTLWLKYAEFEMKNKFVNSARNVWDRAVTLLPRVDQ---LWYKYIHMEEILGNI 176

Query:   329 DKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                R++ ER ++ +   + W+++ +FE+   +   +  AR ++ER
Sbjct:   177 AGARQIFERWMDWSPDQQGWLSFIKFELRYNE---IERARTIYER 218

 Score = 115 (45.5 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
 Identities = 64/268 (23%), Positives = 110/268 (41%)

Query:   114 MRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDV 173
             +R   FE + G V+  R VYERA E   ++   E LF+AFA+FEE  R K  +RA     
Sbjct:   230 IRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEE--RCKEVERARF--- 284

Query:   174 IVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRK 233
              + K    +    RA  +Y+  +    +    E  +   + ++++      ED  V K  
Sbjct:   285 -IYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQ----YEDE-VRKSP 338

Query:   234 FQYEE-----EVNSNPNNYDAWFD-YLRLLEDEGNADLIRETYERAIANIPPTKFAELES 287
               Y+       +  +  N D   + Y R + +   A+  R         I    F E+E+
Sbjct:   339 SNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYIYLWINYALFEEIET 398

Query:   288 LLGDMERARAIYELAISQ-PRLDMP-ELVWKAYIDFEVGQGERDKVRELHERLLERTVHV 345
                D+ER R +Y   +   P        +W     FE+ Q      R++    + +    
Sbjct:   399 --EDIERTRDVYRECLKLIPHSKFSFAKIWLLAAQFEIRQLNLTGARQILGNAIGKAPKD 456

Query:   346 KVWMNYAQFEMSSGDEDSVSLARRVFER 373
             K++  Y + E+  G+ D     R+++ER
Sbjct:   457 KIFKKYIEIELQLGNMDR---CRKLYER 481

 Score = 109 (43.4 bits), Expect = 5.8e-42, Sum P(2) = 5.8e-42
 Identities = 26/44 (59%), Positives = 33/44 (75%)

Query:     1 VKNKAPAEIQITAEQLLREAKER-DLEIVPPVEEGWE--EVFDY 41
             VKNK PA IQITAEQ+LREA+ER + EI PP ++  +  E+ DY
Sbjct:    30 VKNKTPAPIQITAEQILREARERQEAEIRPPKQKITDSTELSDY 73

 Score = 102 (41.0 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 56/227 (24%), Positives = 99/227 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179
             EE  G ++GAR+++ER +++    + D++ +++F KFE    E    R   E  ++   K
Sbjct:   170 EEILGNIAGARQIFERWMDW----SPDQQGWLSFIKFELRYNEIERARTIYERFVLCHPK 225

Query:   180 ----FQYEEHE-------RARVIYKYALDHIPKDRTAEI-YKAYTIHEKKYGDRAGIEDV 227
                  +Y + E       R R +Y+ A + +  D  AEI + A+   E++  +       
Sbjct:   226 VSAYIRYAKFEMKGGEVARCRSVYERATEKLADDEEAEILFVAFAEFEERCKE------- 278

Query:   228 IVSKRKFQYEEEVNSNPNN-----YDAWFDYLRLLED-EGNADLI----RETYERAIANI 277
              V + +F Y+  ++  P       Y  +  + +   D EG  D I    R  YE  +   
Sbjct:   279 -VERARFIYKFALDHIPKGRAEDLYRKFVAFEKQYGDKEGIEDAIVGKRRFQYEDEVRKS 337

Query:   278 PPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYI 319
             P        +  LE  +G+ +R R IYE AI+       +  W+ YI
Sbjct:   338 PSNYDSWFDYVRLEESVGNKDRIREIYERAIANVPPAEEKRYWQRYI 384

 Score = 93 (37.8 bits), Expect = 9.5e-08, Sum P(2) = 9.5e-08
 Identities = 39/165 (23%), Positives = 75/165 (45%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE----EGQREKYGDRAGIEDVI 174
             FE   G +   R +YER ++         K++++FAKFE    E + ++  D    EDVI
Sbjct:   535 FEISEGELERTRALYERLLD----RTKHYKVWVSFAKFEASAAELEEDENEDEDQEEDVI 590

Query:   175 VSKR---KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSK 231
               K+   K      +RA   YK +   + ++R A + + +   E  +G+   +  ++ SK
Sbjct:   591 EHKKDCIKRARAIFDRANTYYKDSTPELKEER-ATLLEDWLNMESSFGNLGDVS-IVQSK 648

Query:   232 --RKFQYEEEVNSNPNN--YDAWFDYLRLLEDEG-NADLIRETYE 271
               +K +  + +     +  Y+ + DYL   E +  N  ++   Y+
Sbjct:   649 LPKKLKKRKAITREDGSTEYEEYIDYLYPEESQTTNLKILEAAYK 693

 Score = 44 (20.5 bits), Expect = 7.9e-13, Sum P(2) = 7.9e-13
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query:    17 LREAKERDLEIVPPVEEG--WEEVFDYIF 43
             +RE  ER +  VPP EE   W+    YI+
Sbjct:   360 IREIYERAIANVPPAEEKRYWQR---YIY 385


>TAIR|locus:2080853 [details] [associations]
            symbol:AT3G51110 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA;ISS]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF02184 PROSITE:PS50293 SMART:SM00386 EMBL:CP002686
            GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10 IPI:IPI00546615
            RefSeq:NP_566944.1 UniGene:At.857 ProteinModelPortal:F4J390
            SMR:F4J390 EnsemblPlants:AT3G51110.1 GeneID:824275
            KEGG:ath:AT3G51110 OMA:ERSHTIF Uniprot:F4J390
        Length = 413

 Score = 330 (121.2 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 88/213 (41%), Positives = 121/213 (56%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFE--EGQ----REKYGDRA---- 168
             FE +   +  +R +YER V    + +     FI +AKFE    Q    R  Y +RA    
Sbjct:   182 FELRYNEIERSRSIYERFVLCHPKASS----FIRYAKFEMKNSQVSLARIVY-ERAIEML 236

Query:   169 -GIED----VIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221
               +E+    + V+  +F+   +E ERAR +YKYALDHIPK R  ++YK +   EK+YG++
Sbjct:   237 KDVEEEAEMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNK 296

Query:   222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK 281
              GI+D IV +RK QYE EV  NP NYD+WFDY+ L E  G+ D IRE YERAIAN+P  +
Sbjct:   297 EGIDDAIVGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRIREVYERAIANVPLAE 356

Query:   282 --------------FAELESLLG-DMERARAIY 299
                           +A  E +L  D+ER RA+Y
Sbjct:   357 EKRYWQRYIYLWIDYALFEEILAEDVERTRAVY 389

 Score = 141 (54.7 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 81/326 (24%), Positives = 141/326 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRA-GIED--VIV 175
             +EE       AR V+ERA+E   E   +  L++ +A+FE   R K  + A  + D  V +
Sbjct:    80 WEESQKDHDRARSVWERALE--DESYRNHTLWLKYAEFE--MRNKSVNHARNVWDRAVKI 135

Query:   176 SKR--KFQYEE-H--------ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGI 224
               R  +F Y+  H        + AR I++  +D  P D+ A  +  +   E +Y +    
Sbjct:   136 LPRVDQFWYKYIHMEEILGNIDGARKIFERWMDWSP-DQQA--WLCFIKFELRYNE---- 188

Query:   225 EDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK--- 281
                 + + +  YE  V  +P    ++  Y +         L R  YERAI  +   +   
Sbjct:   189 ----IERSRSIYERFVLCHPKA-SSFIRYAKFEMKNSQVSLARIVYERAIEMLKDVEEEA 243

Query:   282 ------FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV---- 331
                   FAE E L  ++ERAR +Y+ A+        E ++K ++ FE   G ++ +    
Sbjct:   244 EMIFVAFAEFEELCKEVERARFLYKYALDHIPKGRAEDLYKKFVAFEKQYGNKEGIDDAI 303

Query:   332 ---REL-HE-RLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE 386
                R+L +E  + +  ++   W +Y   E + GD+D +   R V+ERA   +  + EK  
Sbjct:   304 VGRRKLQYEGEVRKNPLNYDSWFDYISLEETLGDKDRI---REVYERAIANVPLAEEKRY 360

Query:   387 RVMLLEAWKE---FEAQHGDDESRAK 409
                 +  W +   FE    +D  R +
Sbjct:   361 WQRYIYLWIDYALFEEILAEDVERTR 386

 Score = 132 (51.5 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
 Identities = 39/166 (23%), Positives = 77/166 (46%)

Query:   215 EKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI 274
             ++K  D   + +  + +RK ++E+++     N   W  Y    E + + D  R  +ERA+
Sbjct:    40 KQKITDSDELAEYRLRRRK-EFEDQIRGAKTNSQVWVRYADWEESQKDHDRARSVWERAL 98

Query:   275 ANIPPT------KFAELESLLGDMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGE 327
              +          K+AE E     +  AR +++ A+   PR+D     W  YI  E   G 
Sbjct:    99 EDESYRNHTLWLKYAEFEMRNKSVNHARNVWDRAVKILPRVDQ---FWYKYIHMEEILGN 155

Query:   328 RDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
              D  R++ ER ++ +   + W+ + +FE+   +   +  +R ++ER
Sbjct:   156 IDGARKIFERWMDWSPDQQAWLCFIKFELRYNE---IERSRSIYER 198

 Score = 117 (46.2 bits), Expect = 0.00057, P = 0.00057
 Identities = 36/114 (31%), Positives = 55/114 (48%)

Query:   267 RETYERAIANIPPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQG 326
             RE  +  I   P  K  + + L     R R  +E  I   + +    VW  Y D+E  Q 
Sbjct:    28 REREDSRILRPPKQKITDSDELAEYRLRRRKEFEDQIRGAKTNSQ--VWVRYADWEESQK 85

Query:   327 ERDKVRELHERLLERTVHVK--VWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378
             + D+ R + ER LE   +    +W+ YA+FEM +    SV+ AR V++RA + L
Sbjct:    86 DHDRARSVWERALEDESYRNHTLWLKYAEFEMRN---KSVNHARNVWDRAVKIL 136

 Score = 110 (43.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 66/257 (25%), Positives = 114/257 (44%)

Query:   111 TYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEE------GQR--- 161
             T  ++   FE +N  V+ AR V++RAV+      +D+  +  +   EE      G R   
Sbjct:   107 TLWLKYAEFEMRNKSVNHARNVWDRAVKIL--PRVDQ-FWYKYIHMEEILGNIDGARKIF 163

Query:   162 EKYGDRAGIEDVIVSKRKFQ--YEEHERARVIY-KYALDHIPKDRTAEIYKAYTIHEKKY 218
             E++ D +  +   +   KF+  Y E ER+R IY ++ L H PK   A  +  Y   E K 
Sbjct:   164 ERWMDWSPDQQAWLCFIKFELRYNEIERSRSIYERFVLCH-PK---ASSFIRYAKFEMK- 218

Query:   219 GDRAGIEDVIVSKRKFQYEEEVNSNPNN-YDAWFDYLRLLEDEGNADLIRETYERAIANI 277
               +  +   IV +R  +  ++V       + A+ ++  L ++   A   R  Y+ A+ +I
Sbjct:   219 NSQVSLAR-IVYERAIEMLKDVEEEAEMIFVAFAEFEELCKEVERA---RFLYKYALDHI 274

Query:   278 PP-------TKFAELESLLGDME--------RARAIYELAISQPRLDMPELVWKAYIDFE 322
             P         KF   E   G+ E        R +  YE  + +  L+     W  YI  E
Sbjct:   275 PKGRAEDLYKKFVAFEKQYGNKEGIDDAIVGRRKLQYEGEVRKNPLNYDS--WFDYISLE 332

Query:   323 VGQGERDKVRELHERLL 339
                G++D++RE++ER +
Sbjct:   333 ETLGDKDRIREVYERAI 349

 Score = 95 (38.5 bits), Expect = 3.5e-38, Sum P(2) = 3.5e-38
 Identities = 20/34 (58%), Positives = 27/34 (79%)

Query:     1 VKNKAPAEIQITAEQLLREAKER-DLEIVPPVEE 33
             VKNK PA +QITAEQ+L+EA+ER D  I+ P ++
Sbjct:     8 VKNKTPAPVQITAEQVLKEAREREDSRILRPPKQ 41

 Score = 39 (18.8 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
 Identities = 9/29 (31%), Positives = 17/29 (58%)

Query:    18 REAKERDLEIVPPVEEGWEEVFDYIFPED 46
             R   +R ++I+P V++ W   + YI  E+
Sbjct:   126 RNVWDRAVKILPRVDQFW---YKYIHMEE 151


>GENEDB_PFALCIPARUM|PFD0180c [details] [associations]
            symbol:PFD0180c "CGI-201 protein, short form"
            species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
            evidence=ISS] [GO:0000245 "spliceosomal complex assembly"
            evidence=ISS] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386 GO:GO:0003723
            GO:GO:0005622 Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245
            KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
            ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
            GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
            ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
        Length = 780

 Score = 274 (101.5 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 71/225 (31%), Positives = 116/225 (51%)

Query:   229 VSKRKFQYEEEVNSNPNN--YDAWFDY-LRLLEDEGNADLIRETYERAIANIPPTKFA-- 283
             V+K +  +   + + PN   ++ + ++ L+L    GN    R  Y + +   P    A  
Sbjct:   425 VNKARSIFNNALQTIPNEKIFEKFCEFELKL----GNIRECRNVYAKYVEAFPFNSKAWI 480

Query:   284 ---ELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
                  E  L ++ERAR I E+AI+   + +PEL+WK YID E+   E D  R+L++RLL 
Sbjct:   481 SMINFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLN 540

Query:   341 RTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
              T H KV+ +YA+F     D+  + + R++ E   +  K +    ER +LL    + E  
Sbjct:   541 ITQHYKVYKSYAEFTYIYLDD--IEMCRKILEEGIEFCKKNELINERCILLNFLCDIEKD 598

Query:   401 HGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED 445
             +GD E   K   +LP++ KKR    N++  +E  EE   Y+FP+D
Sbjct:   599 YGDKEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDD 643

 Score = 187 (70.9 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 55/184 (29%), Positives = 95/184 (51%)

Query:   117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-- 174
             + FEE+   ++  R+++ER +    +  L+   F  F KFE+  +     RA  E  I  
Sbjct:   179 IYFEERCNEINKCREIFERLIVSIPK--LE--CFYKFIKFEKKYKNIVRARAAYEKCIEL 234

Query:   175 -----VSKR------KFQYE--EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221
                  + +        F+ E  E+ER + IY  AL  +PK+++  +YK +   +KKY ++
Sbjct:   235 LPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANK 294

Query:   222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-GNADL------IRETYERAI 274
               + + ++ K +  YE+E+  N N+YD WF+Y++L E    N +       IR+ YERAI
Sbjct:   295 DELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAI 354

Query:   275 ANIP 278
             + IP
Sbjct:   355 SIIP 358

 Score = 119 (46.9 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
 Identities = 43/167 (25%), Positives = 75/167 (44%)

Query:   217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276
             KYG    I+   + + +  +E  +N +  N + W  Y+ +     N +  R   ER +  
Sbjct:    76 KYG-LWEIKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLL 134

Query:   277 IPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331
             +P       K+A LE +L +   AR IYE  I   +  + E  +  YI FE    E +K 
Sbjct:   135 LPLENIFWKKYAHLEEILNNYVNARNIYERWI---KFKIDESSFLCYIYFEERCNEINKC 191

Query:   332 RELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378
             RE+ ERL+     ++ +  + +FE       ++  AR  +E+  + L
Sbjct:   192 REIFERLIVSIPKLECFYKFIKFEKKY---KNIVRARAAYEKCIELL 235

 Score = 110 (43.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
 Identities = 66/282 (23%), Positives = 124/282 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE++   +  AR  YE+ +E      +DE  +I F  FEE Q E Y +R   + + +   
Sbjct:   214 FEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNE-Y-ERC--KKIYIEAL 269

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTA-EIYKAYTIHEKKYGDRAGIEDVIVSKRK---- 233
             K   +   ++ ++YK  L    K     E++++  I E+ +      ED +   +     
Sbjct:   270 KILPKN--KSELLYKNFLQFQKKYANKDELHESLLIKERIF-----YEDELKKNKNDYDI 322

Query:   234 -FQYEEEVNSNPNNYDAWFDYLRLLE-DEGNADLI-----RETYERAIAN-IPPTKFAEL 285
              F Y +   SN NN +     +R+ +  E    +I     ++ ++R I   I  + F EL
Sbjct:   323 WFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSIFEEL 382

Query:   286 ESLLGDMERARAIYELAISQPRLDMPELVWKA----YIDFEVGQGERDKVRELHERLLER 341
              +   +++RAR +Y   I    L   E  +K     Y  FE+ Q   +K R +    L+ 
Sbjct:   383 YAQ--NIQRARDVYNNIIKI--LSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQT 438

Query:   342 TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383
               + K++  + +FE+  G+   +   R V+ +  +A   +S+
Sbjct:   439 IPNEKIFEKFCEFELKLGN---IRECRNVYAKYVEAFPFNSK 477

 Score = 75 (31.5 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query:     1 VKNKAPAEIQITAEQLLREAKE 22
             VKNK  AE+QITAEQL+ EA E
Sbjct:    10 VKNKNAAEVQITAEQLINEALE 31


>UNIPROTKB|Q8I1Z2 [details] [associations]
            symbol:PFD0180c "CGI-201 protein, short form" species:36329
            "Plasmodium falciparum 3D7" [GO:0000245 "spliceosomal complex
            assembly" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            PROSITE:PS50293 SMART:SM00386 GO:GO:0003723 GO:GO:0005622
            Gene3D:1.25.40.10 EMBL:AL844503 GO:GO:0000245 KO:K12869
            HOGENOM:HOG000207972 OMA:KFTFAKI RefSeq:XP_001351349.1
            ProteinModelPortal:Q8I1Z2 EnsemblProtists:PFD0180c:mRNA
            GeneID:812468 KEGG:pfa:PFD0180c EuPathDB:PlasmoDB:PF3D7_0403700
            ProtClustDB:CLSZ2429136 Uniprot:Q8I1Z2
        Length = 780

 Score = 274 (101.5 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 71/225 (31%), Positives = 116/225 (51%)

Query:   229 VSKRKFQYEEEVNSNPNN--YDAWFDY-LRLLEDEGNADLIRETYERAIANIPPTKFA-- 283
             V+K +  +   + + PN   ++ + ++ L+L    GN    R  Y + +   P    A  
Sbjct:   425 VNKARSIFNNALQTIPNEKIFEKFCEFELKL----GNIRECRNVYAKYVEAFPFNSKAWI 480

Query:   284 ---ELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
                  E  L ++ERAR I E+AI+   + +PEL+WK YID E+   E D  R+L++RLL 
Sbjct:   481 SMINFELSLDEVERARQIAEIAINLDDMKLPELIWKNYIDMEINLQEYDNARKLYDRLLN 540

Query:   341 RTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
              T H KV+ +YA+F     D+  + + R++ E   +  K +    ER +LL    + E  
Sbjct:   541 ITQHYKVYKSYAEFTYIYLDD--IEMCRKILEEGIEFCKKNELINERCILLNFLCDIEKD 598

Query:   401 HGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED 445
             +GD E   K   +LP++ KKR    N++  +E  EE   Y+FP+D
Sbjct:   599 YGDKEIIDKTLKRLPKKVKKRKIIKNNDNDDEIIEEYITYVFPDD 643

 Score = 187 (70.9 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
 Identities = 55/184 (29%), Positives = 95/184 (51%)

Query:   117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI-- 174
             + FEE+   ++  R+++ER +    +  L+   F  F KFE+  +     RA  E  I  
Sbjct:   179 IYFEERCNEINKCREIFERLIVSIPK--LE--CFYKFIKFEKKYKNIVRARAAYEKCIEL 234

Query:   175 -----VSKR------KFQYE--EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221
                  + +        F+ E  E+ER + IY  AL  +PK+++  +YK +   +KKY ++
Sbjct:   235 LPSCYIDENFYIHFCNFEEEQNEYERCKKIYIEALKILPKNKSELLYKNFLQFQKKYANK 294

Query:   222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-GNADL------IRETYERAI 274
               + + ++ K +  YE+E+  N N+YD WF+Y++L E    N +       IR+ YERAI
Sbjct:   295 DELHESLLIKERIFYEDELKKNKNDYDIWFNYIKLEESNINNINKEKCIIRIRDLYERAI 354

Query:   275 ANIP 278
             + IP
Sbjct:   355 SIIP 358

 Score = 119 (46.9 bits), Expect = 6.9e-07, Sum P(2) = 6.9e-07
 Identities = 43/167 (25%), Positives = 75/167 (44%)

Query:   217 KYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN 276
             KYG    I+   + + +  +E  +N +  N + W  Y+ +     N +  R   ER +  
Sbjct:    76 KYG-LWEIKQKDIERCRSIFERALNIDYTNKNLWLKYIEVELINKNINSARNLLERVVLL 134

Query:   277 IPPT-----KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKV 331
             +P       K+A LE +L +   AR IYE  I   +  + E  +  YI FE    E +K 
Sbjct:   135 LPLENIFWKKYAHLEEILNNYVNARNIYERWI---KFKIDESSFLCYIYFEERCNEINKC 191

Query:   332 RELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQAL 378
             RE+ ERL+     ++ +  + +FE       ++  AR  +E+  + L
Sbjct:   192 REIFERLIVSIPKLECFYKFIKFEKKY---KNIVRARAAYEKCIELL 235

 Score = 110 (43.8 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
 Identities = 66/282 (23%), Positives = 124/282 (43%)

Query:   119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
             FE++   +  AR  YE+ +E      +DE  +I F  FEE Q E Y +R   + + +   
Sbjct:   214 FEKKYKNIVRARAAYEKCIELLPSCYIDENFYIHFCNFEEEQNE-Y-ERC--KKIYIEAL 269

Query:   179 KFQYEEHERARVIYKYALDHIPKDRTA-EIYKAYTIHEKKYGDRAGIEDVIVSKRK---- 233
             K   +   ++ ++YK  L    K     E++++  I E+ +      ED +   +     
Sbjct:   270 KILPKN--KSELLYKNFLQFQKKYANKDELHESLLIKERIF-----YEDELKKNKNDYDI 322

Query:   234 -FQYEEEVNSNPNNYDAWFDYLRLLE-DEGNADLI-----RETYERAIAN-IPPTKFAEL 285
              F Y +   SN NN +     +R+ +  E    +I     ++ ++R I   I  + F EL
Sbjct:   323 WFNYIKLEESNINNINKEKCIIRIRDLYERAISIIPIISSKKFWKRYIYLWINYSIFEEL 382

Query:   286 ESLLGDMERARAIYELAISQPRLDMPELVWKA----YIDFEVGQGERDKVRELHERLLER 341
              +   +++RAR +Y   I    L   E  +K     Y  FE+ Q   +K R +    L+ 
Sbjct:   383 YAQ--NIQRARDVYNNIIKI--LSSYEFTFKKIFILYATFELRQLNVNKARSIFNNALQT 438

Query:   342 TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSE 383
               + K++  + +FE+  G+   +   R V+ +  +A   +S+
Sbjct:   439 IPNEKIFEKFCEFELKLGN---IRECRNVYAKYVEAFPFNSK 477

 Score = 75 (31.5 bits), Expect = 7.4e-25, Sum P(2) = 7.4e-25
 Identities = 16/22 (72%), Positives = 18/22 (81%)

Query:     1 VKNKAPAEIQITAEQLLREAKE 22
             VKNK  AE+QITAEQL+ EA E
Sbjct:    10 VKNKNAAEVQITAEQLINEALE 31


>CGD|CAL0004743 [details] [associations]
            symbol:orf19.332 species:5476 "Candida albicans" [GO:0071007
            "U2-type catalytic step 2 spliceosome" evidence=IEA] [GO:0071004
            "U2-type prespliceosome" evidence=IEA] [GO:0071006 "U2-type
            catalytic step 1 spliceosome" evidence=IEA] [GO:0071008 "U2-type
            post-mRNA release spliceosomal complex" evidence=IEA] [GO:0000785
            "chromatin" evidence=IEA] [GO:0000974 "Prp19 complex" evidence=IEA]
            [GO:0000354 "cis assembly of pre-catalytic spliceosome"
            evidence=IEA] [GO:0006270 "DNA replication initiation"
            evidence=IEA] [GO:0003688 "DNA replication origin binding"
            evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
            InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
            Pfam:PF05843 SMART:SM00386 GO:GO:0008380 GO:GO:0006397
            GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 EMBL:AACQ01000027
            EMBL:AACQ01000026 RefSeq:XP_720027.1 RefSeq:XP_720159.1
            ProteinModelPortal:Q5AED6 STRING:Q5AED6 GeneID:3638214
            GeneID:3638364 KEGG:cal:CaO19.332 KEGG:cal:CaO19.7964
            eggNOG:NOG327505 KO:K12869 Uniprot:Q5AED6
        Length = 758

 Score = 175 (66.7 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
 Identities = 38/97 (39%), Positives = 59/97 (60%)

Query:   353 QFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNS 412
             +FE ++ DE  +   R +FE A    K   +KE R++++EAW++FE  +G DES +K+  
Sbjct:   650 EFE-ATVDESQIESTRNIFEEAMTYFKDKDDKESRLVIIEAWRDFEEVNGSDESLSKVTK 708

Query:   413 KLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAK 449
             +LP   +KR +T     +EE   E  DYIFP+DE+ K
Sbjct:   709 RLPVIVRKR-RTVGS--IEE---EYIDYIFPDDESKK 739

 Score = 165 (63.1 bits), Expect = 7.4e-09, P = 7.4e-09
 Identities = 51/189 (26%), Positives = 88/189 (46%)

Query:   237 EEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLLGD 291
             E  ++ N  +   W  Y++L     N +  R   ERAI  +P        + + E +L +
Sbjct:   145 ERALDVNIQHVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNKLWFLYVQTEEMLKN 204

Query:   292 MERARAIYELAISQPRLDMPEL-VWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350
                 RA++E  +       P+  VW AYI+FE    E++ VR + ++ +    +   W  
Sbjct:   205 YPMVRAVFERWLDWH----PDTSVWDAYINFEARYEEKENVRTIFKKYVHEFPNAGTWYK 260

Query:   351 YAQFEMSSGDEDSVSLARRVFERANQALKAS-SEK----EERVMLLEAWKEFEAQHGDDE 405
             + ++EM + + D V+  R VFE A   L ++ SE+    EE   ++ +W  +E   G+  
Sbjct:   261 WIKYEMEN-NRDDVNTVRAVFESAVDTLLSNKSEENDDDEEFATIISSWTSWEVSCGE-A 318

Query:   406 SRAKLNSKL 414
             SRA    KL
Sbjct:   319 SRANEIFKL 327

 Score = 162 (62.1 bits), Expect = 3.6e-22, Sum P(2) = 3.6e-22
 Identities = 32/109 (29%), Positives = 61/109 (55%)

Query:   184 EHERARVIYKYALDHIPK-----DRT-AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237
             E  RA  I+K  LD+        D+T + IY A+   EK +G++  IE  ++ KR+ +YE
Sbjct:   317 EASRANEIFKLLLDNKTNKLEISDKTKSSIYTAFVEFEKNFGNKDSIEQSVLIKRRIKYE 376

Query:   238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELE 286
             +E+ ++P +YD+W+ Y+ LL++  N   +   +++   N+   K   ++
Sbjct:   377 QEIQNDPYDYDSWWKYMTLLQNSSNKSDLENAFKKVTGNVVHDKHKSIK 425

 Score = 119 (46.9 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
 Identities = 47/171 (27%), Positives = 76/171 (44%)

Query:   211 YTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADL--IRE 268
             +T   +   D   ++    +KRK ++E+ +N N  N   W  Y +  E E N D    R 
Sbjct:    85 FTTPRQTIQDTEELQSYQQTKRK-EFEQHINKNRLNLGQWTRYAKW-EIENNHDFPRARS 142

Query:   269 TYERAI-ANIPPTKF----AELESLLGDMERARAIYELAISQ-PRLDMPELVWKAYIDFE 322
               ERA+  NI    F     +LE    ++  AR + E AI+  PR++    +W  Y+  E
Sbjct:   143 ILERALDVNIQHVPFWIQYIQLELSHKNINHARNLMERAINTLPRVNK---LWFLYVQTE 199

Query:   323 VGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
                     VR + ER L+      VW  Y  FE    ++++V   R +F++
Sbjct:   200 EMLKNYPMVRAVFERWLDWHPDTSVWDAYINFEARYEEKENV---RTIFKK 247

 Score = 44 (20.5 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
 Identities = 25/90 (27%), Positives = 37/90 (41%)

Query:   126 VSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-------DVIV--S 176
             ++ AR + ERA+      N   KL+  + + EE  +     RA  E       D  V  +
Sbjct:   171 INHARNLMERAINTLPRVN---KLWFLYVQTEEMLKNYPMVRAVFERWLDWHPDTSVWDA 227

Query:   177 KRKFQ--YEEHERARVIYKYALDHIPKDRT 204
                F+  YEE E  R I+K  +   P   T
Sbjct:   228 YINFEARYEEKENVRTIFKKYVHEFPNAGT 257


>TAIR|locus:2184236 [details] [associations]
            symbol:AT5G28740 species:3702 "Arabidopsis thaliana"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
            evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            PROSITE:PS50293 SMART:SM00386 EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005622 GO:GO:0006396
            Gene3D:1.25.40.10 EMBL:AF262041 eggNOG:NOG289100 KO:K12867
            HOGENOM:HOG000176133 OMA:RRYLMYD IPI:IPI00544799 RefSeq:NP_198226.1
            UniGene:At.47571 ProteinModelPortal:Q9LKU3 SMR:Q9LKU3 IntAct:Q9LKU3
            STRING:Q9LKU3 PaxDb:Q9LKU3 PRIDE:Q9LKU3 EnsemblPlants:AT5G28740.1
            GeneID:832986 KEGG:ath:AT5G28740 TAIR:At5g28740 InParanoid:Q9LKU3
            PhylomeDB:Q9LKU3 ProtClustDB:CLSN2687354 Genevestigator:Q9LKU3
            Uniprot:Q9LKU3
        Length = 917

 Score = 175 (66.7 bits), Expect = 7.5e-10, P = 7.5e-10
 Identities = 73/245 (29%), Positives = 112/245 (45%)

Query:   120 EEQNGFVSGARKVYERAVE-------------FFGEENLDEKLFI-AFAKFEEGQRE-KY 164
             EE  G +   R VYE+ ++             F  EEN   K F  AF  +E G +  KY
Sbjct:   525 EESLGTLESTRAVYEKILDLRIATPQIIMNYAFLLEEN---KYFEDAFKVYERGVKIFKY 581

Query:   165 GDRAGIEDVIVSK--RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA 222
                  I    ++K  +++   + ERAR ++++A+   P D    +Y  Y   E+ YG   
Sbjct:   582 PHVKDIWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYG--- 638

Query:   223 GIEDVIVSKRKFQ-YEEEVNSNPNNY--DAWFDYLRLLEDEGNADLIRETYERAI-ANIP 278
                   ++KR  + YEE     P     + +  Y+    +       RE YE+AI + +P
Sbjct:   639 ------LAKRAMKVYEEATKKVPEGQKLEMYEIYISRAAEIFGVPRTREIYEQAIESGLP 692

Query:   279 PT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYIDFEVGQGERD 329
                      KFAELE  LG+++RARA+Y+ +   + PR D PE  W  + +FEV  G  D
Sbjct:   693 HKDVKIMCIKFAELERSLGEIDRARALYKYSSQFADPRSD-PEF-WNKWHEFEVQHGNED 750

Query:   330 KVREL 334
               RE+
Sbjct:   751 TYREM 755

 Score = 143 (55.4 bits), Expect = 2.5e-06, P = 2.5e-06
 Identities = 65/245 (26%), Positives = 112/245 (45%)

Query:   186 ERARVIYKYALD-HIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244
             E  R +Y+  LD  I   +    Y A+ + E KY      ED     + ++   ++   P
Sbjct:   532 ESTRAVYEKILDLRIATPQIIMNY-AFLLEENKY-----FEDAF---KVYERGVKIFKYP 582

Query:   245 NNYDAWFDYL-RLLEDEGNADL--IRETYERAIANIPPT-------KFAELESLLGDMER 294
             +  D W  YL + ++  G   L   RE +E A++  P         ++A+LE   G  +R
Sbjct:   583 HVKDIWVTYLTKFVKRYGKTKLERARELFEHAVSMAPSDAVRTLYLQYAKLEEDYGLAKR 642

Query:   295 ARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-H--VKVW-M 349
             A  +YE A  + P     E+ ++ YI          + RE++E+ +E  + H  VK+  +
Sbjct:   643 AMKVYEEATKKVPEGQKLEM-YEIYISRAAEIFGVPRTREIYEQAIESGLPHKDVKIMCI 701

Query:   350 NYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES-RA 408
              +A+ E S G+ D    AR +++ ++Q     S+ E        W EFE QHG++++ R 
Sbjct:   702 KFAELERSLGEIDR---ARALYKYSSQFADPRSDPE----FWNKWHEFEVQHGNEDTYRE 754

Query:   409 KLNSK 413
              L  K
Sbjct:   755 MLRIK 759


>SGD|S000004107 [details] [associations]
            symbol:CLF1 "Member of the NineTeen Complex (NTC)"
            species:4932 "Saccharomyces cerevisiae" [GO:0000785 "chromatin"
            evidence=IDA] [GO:0000384 "first spliceosomal transesterification
            activity" evidence=IC] [GO:0071007 "U2-type catalytic step 2
            spliceosome" evidence=IDA] [GO:0071004 "U2-type prespliceosome"
            evidence=IDA] [GO:0071008 "U2-type post-mRNA release spliceosomal
            complex" evidence=IDA] [GO:0000974 "Prp19 complex" evidence=IDA]
            [GO:0071006 "U2-type catalytic step 1 spliceosome" evidence=IDA]
            [GO:0000354 "cis assembly of pre-catalytic spliceosome"
            evidence=IMP;IPI] [GO:0005622 "intracellular" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0006270 "DNA
            replication initiation" evidence=IMP;IPI] [GO:0005681 "spliceosomal
            complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0003682
            "chromatin binding" evidence=IDA] [GO:0003688 "DNA replication
            origin binding" evidence=IDA] [GO:0000386 "second spliceosomal
            transesterification activity" evidence=IC] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF02184 SMART:SM00386
            SGD:S000004107 GO:GO:0000785 GO:GO:0003682 EMBL:BK006945
            GO:GO:0003688 GO:GO:0007049 GO:GO:0006270 Gene3D:1.25.40.10
            EMBL:X89514 EMBL:U53877 GO:GO:0000974 GO:GO:0071006
            eggNOG:NOG327505 KO:K12869 HOGENOM:HOG000207972 OMA:KFTFAKI
            OrthoDB:EOG4NKG44 EMBL:Z73289 PIR:S64954 RefSeq:NP_013218.1
            ProteinModelPortal:Q12309 SMR:Q12309 DIP:DIP-1685N IntAct:Q12309
            MINT:MINT-385873 STRING:Q12309 PaxDb:Q12309 PRIDE:Q12309
            EnsemblFungi:YLR117C GeneID:850808 KEGG:sce:YLR117C CYGD:YLR117c
            GeneTree:ENSGT00550000074931 NextBio:967040 Genevestigator:Q12309
            GermOnline:YLR117C GO:GO:0071007 GO:GO:0071008 GO:GO:0071004
            GO:GO:0000354 Uniprot:Q12309
        Length = 687

 Score = 178 (67.7 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 77/290 (26%), Positives = 140/290 (48%)

Query:   173 VIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKR 232
             ++ +K   ++++  +AR I   A+   PK +T + Y    +  K++ DR          R
Sbjct:   408 LMYAKFLIRHDDVPKARKILGKAIGLCPKAKTFKGYIELEVKLKEF-DRV---------R 457

Query:   233 KFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAI----------ANIPPT-K 281
             K  YE+ +   P++   W  Y  L E+ G+ D +R  Y  A+          A I    K
Sbjct:   458 KI-YEKFIEFQPSDLQIWSQYGELEENLGDWDRVRGIYTIALDENSDFLTKEAKIVLLQK 516

Query:   282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341
             +   E+   + E+AR +Y     +  L++ +   +++I+F + Q      ++L +    +
Sbjct:   517 YITFETESQEFEKARKLY-----RRYLELNQYSPQSWIEFAMYQTSTPTEQQLLDLAKLQ 571

Query:   342 TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQH 401
             + +V       +FE++  DE+ +  AR+VFE A    K   +K+ R+ +LEA K++E  +
Sbjct:   572 SENVD---EDIEFEIT--DENKLE-ARKVFEEAIVFFKEKDDKQGRLSILEALKDYEETY 625

Query:   402 GDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPED-EAAKP 450
             G +  +  +  + P+  KK V+  N  GVEE   E  DYIFP+D +  KP
Sbjct:   626 GTELDQETVKKRFPKVIKK-VRLQN--GVEE---EFVDYIFPDDIDDDKP 669

 Score = 160 (61.4 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
 Identities = 70/261 (26%), Positives = 118/261 (45%)

Query:   162 EKYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDR 221
             +++GD   IE+ I  KRK +YE    +   Y Y    +  D  +E +    +        
Sbjct:   289 KQFGDINSIEETISYKRKMEYETI-LSNNAYDYDTWWLYLDLISESFPKQIMQT------ 341

Query:   222 AGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE-GNADLIRETYERAIANIPPT 280
                E  IV  R  +  + V      Y  W  Y+  +E E  N+ L  E ++R I +I P 
Sbjct:   342 --FEKAIVDSRPKELSKNVQWKRYIY-LWMRYICYVELELENSLLEEELFQRLIDDIIPH 398

Query:   281 K---FAEL-----ESLL--GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDK 330
             K   F+++     + L+   D+ +AR I   AI    L      +K YI+ EV   E D+
Sbjct:   399 KHFTFSKIWLMYAKFLIRHDDVPKARKILGKAIG---LCPKAKTFKGYIELEVKLKEFDR 455

Query:   331 VRELHERLLE-RTVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVM 389
             VR+++E+ +E +   +++W  Y + E + GD D V   R ++  A         KE +++
Sbjct:   456 VRKIYEKFIEFQPSDLQIWSQYGELEENLGDWDRV---RGIYTIALDENSDFLTKEAKIV 512

Query:   390 LLEAWKEFEAQHGDDESRAKL 410
             LL+ +  FE +  + E   KL
Sbjct:   513 LLQKYITFETESQEFEKARKL 533

 Score = 150 (57.9 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 34/103 (33%), Positives = 62/103 (60%)

Query:   183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIH-EKKYGDRAGIEDVIVSKRKFQYEEEVN 241
             +E+ER+  +Y+ A++  P +   ++ KA  +  EK++GD   IE+ I  KRK +YE  ++
Sbjct:   258 QEYERSSALYQIAIEKWPSN---QLLKAGLLDFEKQFGDINSIEETISYKRKMEYETILS 314

Query:   242 SNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE 284
             +N  +YD W+ YL L+  E     I +T+E+AI +  P + ++
Sbjct:   315 NNAYDYDTWWLYLDLIS-ESFPKQIMQTFEKAIVDSRPKELSK 356

 Score = 37 (18.1 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 9/40 (22%), Positives = 19/40 (47%)

Query:     7 AEIQITAEQLLREAKERDLEIVPPVEEGWEEVFDYIFPED 46
             AE+++      R    R +  +P V++ W   + Y+  E+
Sbjct:   108 AELKVKCINHARNLMNRAISTLPRVDKLW---YKYLIVEE 144


>FB|FBgn0033859 [details] [associations]
            symbol:CG6197 species:7227 "Drosophila melanogaster"
            [GO:0000381 "regulation of alternative mRNA splicing, via
            spliceosome" evidence=IMP] [GO:0005634 "nucleus" evidence=IC]
            [GO:0006911 "phagocytosis, engulfment" evidence=IMP] [GO:0071011
            "precatalytic spliceosome" evidence=IDA] [GO:0000398 "mRNA
            splicing, via spliceosome" evidence=IC] [GO:0071013 "catalytic step
            2 spliceosome" evidence=IDA] InterPro:IPR003107 InterPro:IPR011990
            SMART:SM00386 EMBL:AE013599 GO:GO:0006911 Gene3D:1.25.40.10
            GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0000381
            eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW GeneTree:ENSGT00550000075140
            EMBL:BT133178 RefSeq:NP_610891.1 UniGene:Dm.606 SMR:A1Z9G2
            IntAct:A1Z9G2 STRING:A1Z9G2 EnsemblMetazoa:FBtr0087623 GeneID:36514
            KEGG:dme:Dmel_CG6197 UCSC:CG6197-RA FlyBase:FBgn0033859
            InParanoid:A1Z9G2 OrthoDB:EOG42FQZD GenomeRNAi:36514 NextBio:798953
            Uniprot:A1Z9G2
        Length = 883

 Score = 172 (65.6 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 73/267 (27%), Positives = 123/267 (46%)

Query:   139 FFGEENLDEKLFIAFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYA 195
             F  E N  E+   A+  +E+G    K+ +   I +  ++K   +Y   + ERAR +++  
Sbjct:   526 FLEEHNYFEE---AYRAYEKGISLFKWPNVYDIWNSYLTKFLERYGGTKLERARDLFEQC 582

Query:   196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255
             LD  P +     Y  Y   E+++G       V         E+E+      +D +  +++
Sbjct:   583 LDQCPPEHAKYFYLLYAKLEEEHGLARHAMSVYDRATSAVKEDEM------FDMYNIFIK 636

Query:   256 LLEDEGNADLIRETYERAIANIPP-------TKFAELESLLGDMERARAIYELA--ISQP 306
                +       RE YE+AI ++P         KFAELE+ LG+++RARAIY     +  P
Sbjct:   637 KAAEIYGLPRTREIYEKAIESLPEQNMRHMCVKFAELETKLGEVDRARAIYAHCSQVCDP 696

Query:   307 RLDMPELVWKAYIDFEVGQGERDKVRELH--ERLLERTVHVKVWMNYAQF-EMSSGDEDS 363
             R+      W+ + +FEV  G  D +RE+   +R ++ T + +V M  AQF   ++G    
Sbjct:   697 RITAD--FWQTWKEFEVRHGNEDTMREMLRIKRSVQATYNTQVNMMAAQFLSTNNGAAAD 754

Query:   364 VSL-----ARRVFE-RANQALKASSEK 384
                     A R+ E +A QA   S +K
Sbjct:   755 AGAGAGPDAMRLLEEKARQAAAESKQK 781

 Score = 133 (51.9 bits), Expect = 2.9e-05, P = 2.9e-05
 Identities = 49/199 (24%), Positives = 88/199 (44%)

Query:   244 PNNYDAWFDYL-RLLEDEGNADL--IRETYERAIANIPPTK-------FAELESLLGDME 293
             PN YD W  YL + LE  G   L   R+ +E+ +   PP         +A+LE   G   
Sbjct:   550 PNVYDIWNSYLTKFLERYGGTKLERARDLFEQCLDQCPPEHAKYFYLLYAKLEEEHGLAR 609

Query:   294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKV---WMN 350
              A ++Y+ A S  + D    ++  +I          + RE++E+ +E      +    + 
Sbjct:   610 HAMSVYDRATSAVKEDEMFDMYNIFIKKAAEIYGLPRTREIYEKAIESLPEQNMRHMCVK 669

Query:   351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKL 410
             +A+ E   G+ D    AR ++   +Q        +      + WKEFE +HG++++  ++
Sbjct:   670 FAELETKLGEVDR---ARAIYAHCSQVCDPRITAD----FWQTWKEFEVRHGNEDTMREM 722

Query:   411 NSKLPRRAKKRVK-TYNDE 428
                   R K+ V+ TYN +
Sbjct:   723 -----LRIKRSVQATYNTQ 736


>WB|WBGene00016837 [details] [associations]
            symbol:C50F2.3 species:6239 "Caenorhabditis elegans"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0040010 "positive regulation of
            growth rate" evidence=IMP] [GO:0009792 "embryo development ending
            in birth or egg hatching" evidence=IMP] [GO:0009790 "embryo
            development" evidence=IMP] [GO:0001703 "gastrulation with mouth
            forming first" evidence=IMP] [GO:0000003 "reproduction"
            evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
            "cytokinesis" evidence=IMP] [GO:0002119 "nematode larval
            development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR019734
            Pfam:PF13181 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
            GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0005622
            GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10 InterPro:IPR013105
            Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
            HOGENOM:HOG000176133 GeneTree:ENSGT00550000075140 EMBL:FO080915
            PIR:T29775 RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
            IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
            EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
            UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
            NextBio:873471 Uniprot:P91175
        Length = 855

 Score = 161 (61.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 67/267 (25%), Positives = 126/267 (47%)

Query:   119 FEEQNGFVSGARKVYERAVEF-------------FGEENLDEKLFIAFAKFEEG-QREKY 164
             +EE  G V   RKVY++ +E              F EEN  E   +AF  +E+G    K+
Sbjct:   497 YEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEEN--EYFELAFQAYEKGIALFKW 554

Query:   165 GDRAGIEDVIVSK--RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA 222
                  I +  + K  +++  ++ ERAR +++  L++ P      I+  Y   E+++G   
Sbjct:   555 PGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHG--L 612

Query:   223 GIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281
                 + +  R     +  + + + Y+    Y++ +++       R  +ERAI+ +P  K 
Sbjct:   613 ARHALSIYNRACSGVDRADMH-SMYNI---YIKKVQEMYGIAQCRPIFERAISELPEDKS 668

Query:   282 ------FAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYIDFEVGQGERDKVRE 333
                   +A+LE+ +G+++RARAIY  A  IS P++ +    W  + +FEV  G    VR+
Sbjct:   669 RAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVK--FWDTWKNFEVAHGNEATVRD 726

Query:   334 LHE--RLLERTVHVKVWMNYAQFEMSS 358
             +    R +E + +V V +   Q  + +
Sbjct:   727 MLRVRRSVEASYNVNVTLTSVQMRVDA 753

 Score = 123 (48.4 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 54/198 (27%), Positives = 87/198 (43%)

Query:   244 PNNYDAWFDYL-RLLEDEGNADL--IRETYERAIANIPPTK-------FAELESLLGDME 293
             P  +D W  YL + ++  G   L   R+ +E+ + N PPT        +A+LE   G   
Sbjct:   555 PGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLAR 614

Query:   294 RARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK---VWM 349
              A +IY  A S   R DM  + +  YI          + R + ER +      K   + +
Sbjct:   615 HALSIYNRACSGVDRADMHSM-YNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSL 673

Query:   350 NYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAK 409
              YAQ E + G+ D    AR ++  A +     S+ +  V   + WK FE  HG++   A 
Sbjct:   674 RYAQLETTVGEIDR---ARAIYAHAAEI----SDPKVHVKFWDTWKNFEVAHGNE---AT 723

Query:   410 LNSKLPRRAKKRVK-TYN 426
             +   L  R ++ V+ +YN
Sbjct:   724 VRDML--RVRRSVEASYN 739

 Score = 62 (26.9 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query:   163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEIYKAYTIHEKK 217
             +Y D+ G     ++    +  E ERAR +Y+ A+  +   R  A++Y AY   E++
Sbjct:   257 RYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEER 312


>UNIPROTKB|P91175 [details] [associations]
            symbol:C50F2.3 "Protein C50F2.3" species:6239
            "Caenorhabditis elegans" [GO:0005515 "protein binding"
            evidence=IPI] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR019734 Pfam:PF13181 SMART:SM00386 GO:GO:0009792
            GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0000003
            GO:GO:0005622 GO:GO:0006396 GO:GO:0000910 Gene3D:1.25.40.10
            InterPro:IPR013105 Pfam:PF07719 GO:GO:0001703 eggNOG:NOG289100
            KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
            GeneTree:ENSGT00550000075140 EMBL:FO080915 PIR:T29775
            RefSeq:NP_491250.1 ProteinModelPortal:P91175 SMR:P91175
            IntAct:P91175 STRING:P91175 PaxDb:P91175 EnsemblMetazoa:C50F2.3.1
            EnsemblMetazoa:C50F2.3.2 GeneID:171970 KEGG:cel:CELE_C50F2.3
            UCSC:C50F2.3 CTD:171970 WormBase:C50F2.3 InParanoid:P91175
            NextBio:873471 Uniprot:P91175
        Length = 855

 Score = 161 (61.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 67/267 (25%), Positives = 126/267 (47%)

Query:   119 FEEQNGFVSGARKVYERAVEF-------------FGEENLDEKLFIAFAKFEEG-QREKY 164
             +EE  G V   RKVY++ +E              F EEN  E   +AF  +E+G    K+
Sbjct:   497 YEECCGTVESCRKVYDKMIELRVASPQMIMNYAMFLEEN--EYFELAFQAYEKGIALFKW 554

Query:   165 GDRAGIEDVIVSK--RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRA 222
                  I +  + K  +++  ++ ERAR +++  L++ P      I+  Y   E+++G   
Sbjct:   555 PGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHG--L 612

Query:   223 GIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK- 281
                 + +  R     +  + + + Y+    Y++ +++       R  +ERAI+ +P  K 
Sbjct:   613 ARHALSIYNRACSGVDRADMH-SMYNI---YIKKVQEMYGIAQCRPIFERAISELPEDKS 668

Query:   282 ------FAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYIDFEVGQGERDKVRE 333
                   +A+LE+ +G+++RARAIY  A  IS P++ +    W  + +FEV  G    VR+
Sbjct:   669 RAMSLRYAQLETTVGEIDRARAIYAHAAEISDPKVHVK--FWDTWKNFEVAHGNEATVRD 726

Query:   334 LHE--RLLERTVHVKVWMNYAQFEMSS 358
             +    R +E + +V V +   Q  + +
Sbjct:   727 MLRVRRSVEASYNVNVTLTSVQMRVDA 753

 Score = 123 (48.4 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 54/198 (27%), Positives = 87/198 (43%)

Query:   244 PNNYDAWFDYL-RLLEDEGNADL--IRETYERAIANIPPTK-------FAELESLLGDME 293
             P  +D W  YL + ++  G   L   R+ +E+ + N PPT        +A+LE   G   
Sbjct:   555 PGVFDIWNTYLVKFIKRYGGKKLERARDLFEQCLENCPPTHAKYIFLLYAKLEEEHGLAR 614

Query:   294 RARAIYELAISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK---VWM 349
              A +IY  A S   R DM  + +  YI          + R + ER +      K   + +
Sbjct:   615 HALSIYNRACSGVDRADMHSM-YNIYIKKVQEMYGIAQCRPIFERAISELPEDKSRAMSL 673

Query:   350 NYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAK 409
              YAQ E + G+ D    AR ++  A +     S+ +  V   + WK FE  HG++   A 
Sbjct:   674 RYAQLETTVGEIDR---ARAIYAHAAEI----SDPKVHVKFWDTWKNFEVAHGNE---AT 723

Query:   410 LNSKLPRRAKKRVK-TYN 426
             +   L  R ++ V+ +YN
Sbjct:   724 VRDML--RVRRSVEASYN 739

 Score = 62 (26.9 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
 Identities = 16/56 (28%), Positives = 29/56 (51%)

Query:   163 KYGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRT-AEIYKAYTIHEKK 217
             +Y D+ G     ++    +  E ERAR +Y+ A+  +   R  A++Y AY   E++
Sbjct:   257 RYTDQVGFLWCSLADYYIRSAEFERARDVYEEAIAKVSTVRDFAQVYDAYAAFEER 312


>ZFIN|ZDB-GENE-040426-685 [details] [associations]
            symbol:xab2 "XPA binding protein 2" species:7955
            "Danio rerio" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50293 SMART:SM00386
            ZFIN:ZDB-GENE-040426-685 GO:GO:0005622 GO:GO:0006396
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
            HOVERGEN:HBG024066 EMBL:BC056771 IPI:IPI00614939 UniGene:Dr.12501
            ProteinModelPortal:Q6PGZ8 STRING:Q6PGZ8 InParanoid:Q6PGZ8
            ArrayExpress:Q6PGZ8 Uniprot:Q6PGZ8
        Length = 851

 Score = 153 (58.9 bits), Expect = 1.8e-07, P = 1.8e-07
 Identities = 73/272 (26%), Positives = 125/272 (45%)

Query:   139 FFGEENLDEKLFIAFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYA 195
             F  E N  E+ F A+   E G    K+ +   I +  ++K   +Y  ++ ERAR +++ A
Sbjct:   522 FLEEHNYFEESFKAY---ERGIALFKWPNVHDIWNTYLTKFIDRYGGKKLERARDLFEQA 578

Query:   196 LDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLR 255
             LD  P      IY  Y   E++YG  A     +  +     E E      N      Y++
Sbjct:   579 LDGCPAKYAKTIYLLYAKLEEEYG-LARHAMAVYERATAAVEAEERHQMFNI-----YIK 632

Query:   256 LLEDEGNADLIRETYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQP 306
                +       R  Y++AI  +P         +FA++ES LG+++RARAIY     I  P
Sbjct:   633 RAAEIYGVTHTRAIYQKAIEVLPDEHARDMCLRFADMESKLGEIDRARAIYSYCSQICDP 692

Query:   307 RLDMPELVWKAYIDFEVGQGERDKVRELH--ERLLERTVHVKVWMNYAQFEMSSGDED-S 363
             R+      W+ + +FE+  G  D +RE+   +R ++ T + +V    +Q   ++G+   +
Sbjct:   693 RVTAH--FWQTWKEFEIRHGNEDTIREMLRIKRSVQATYNTQVNFMSSQMLKATGNATGT 750

Query:   364 VS-LA--------RRVFERANQALKASSEKEE 386
             VS LA         R+ E+  Q L A +E+++
Sbjct:   751 VSDLAPGQSGVDDMRLLEQKAQQLAAEAERDK 782


>UNIPROTKB|F1S842 [details] [associations]
            symbol:LOC100157027 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
            PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
            GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011594
            ArrayExpress:F1S842 Uniprot:F1S842
        Length = 1859

 Score = 151 (58.2 bits), Expect = 7.6e-07, P = 7.6e-07
 Identities = 52/181 (28%), Positives = 78/181 (43%)

Query:   224 IEDVIVSKRKFQ-----YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + D+     KFQ     Y   +         W  Y   L   G A       +RA+  +P
Sbjct:  1685 LADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLP 1744

Query:   279 P-------TKFAELESLLGDMERARAIYELAISQ-P-RLDMPELVWKAYIDFEVGQGERD 329
                      KFA+LE  LGD ERA+AI+E  +S  P R D    VW  YID  +  G + 
Sbjct:  1745 KKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD----VWSVYIDMIIKHGSQK 1800

Query:   330 KVRELHERLLERTVHVK----VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKE 385
             +VR++ ER++  ++  K     +  Y  +E   G E  V   +    +A + ++A S  E
Sbjct:  1801 EVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKA---KALEYVEAKSSLE 1857

Query:   386 E 386
             E
Sbjct:  1858 E 1858


>UNIPROTKB|F1S843 [details] [associations]
            symbol:LOC100157027 "Uncharacterized protein" species:9823
            "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
            PROSITE:PS50126 PROSITE:PS50293 SMART:SM00386 GO:GO:0005634
            GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            OMA:LHLADIY GeneTree:ENSGT00390000012228 Ensembl:ENSSSCT00000011593
            ArrayExpress:F1S843 Uniprot:F1S843
        Length = 1876

 Score = 151 (58.2 bits), Expect = 7.7e-07, P = 7.7e-07
 Identities = 52/181 (28%), Positives = 78/181 (43%)

Query:   224 IEDVIVSKRKFQ-----YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + D+     KFQ     Y   +         W  Y   L   G A       +RA+  +P
Sbjct:  1702 LADIYTKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLP 1761

Query:   279 P-------TKFAELESLLGDMERARAIYELAISQ-P-RLDMPELVWKAYIDFEVGQGERD 329
                      KFA+LE  LGD ERA+AI+E  +S  P R D    VW  YID  +  G + 
Sbjct:  1762 KKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD----VWSVYIDMIIKHGSQK 1817

Query:   330 KVRELHERLLERTVHVK----VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKE 385
             +VR++ ER++  ++  K     +  Y  +E   G E  V   +    +A + ++A S  E
Sbjct:  1818 EVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVKA---KALEYVEAKSSLE 1874

Query:   386 E 386
             E
Sbjct:  1875 E 1875


>SGD|S000004842 [details] [associations]
            symbol:RRP5 "RNA binding protein involved in synthesis of
            both 18S and 5.8S rRNAs" species:4932 "Saccharomyces cerevisiae"
            [GO:0030686 "90S preribosome" evidence=IDA] [GO:0005730 "nucleolus"
            evidence=IEA;IDA] [GO:0032040 "small-subunit processome"
            evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0042254 "ribosome biogenesis"
            evidence=IEA] [GO:0000480 "endonucleolytic cleavage in 5'-ETS of
            tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0000472 "endonucleolytic cleavage to generate
            mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0000447 "endonucleolytic cleavage in ITS1 to
            separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic
            rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
            [GO:0000464 "endonucleolytic cleavage in ITS1 upstream of 5.8S rRNA
            from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)"
            evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
            [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR011990
            Pfam:PF00575 PROSITE:PS50126 SMART:SM00386 SGD:S000004842
            GO:GO:0005730 GO:GO:0008266 EMBL:BK006946 Gene3D:1.25.40.10
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:Z49939
            GO:GO:0030686 GO:GO:0032040 GO:GO:0000447 GO:GO:0000472
            InterPro:IPR022967 SMART:SM00316 GO:GO:0000464 GO:GO:0000480
            eggNOG:COG0539 KO:K14792 GeneTree:ENSGT00390000012228
            HOGENOM:HOG000167551 OrthoDB:EOG4N07P1 PIR:S57596
            RefSeq:NP_013956.1 ProteinModelPortal:Q05022 SMR:Q05022
            DIP:DIP-6535N IntAct:Q05022 MINT:MINT-680694 STRING:Q05022
            PaxDb:Q05022 PeptideAtlas:Q05022 EnsemblFungi:YMR229C GeneID:855269
            KEGG:sce:YMR229C CYGD:YMR229c OMA:FYGNVRG NextBio:978879
            Genevestigator:Q05022 GermOnline:YMR229C Uniprot:Q05022
        Length = 1729

 Score = 148 (57.2 bits), Expect = 1.5e-06, P = 1.5e-06
 Identities = 52/178 (29%), Positives = 83/178 (46%)

Query:   203 RTAEIYKAYTIHEKKYGDRAGIE--DVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDE 260
             R  +   +YTIH K  G     E  D      K   ++      + + +W D+L    +E
Sbjct:  1539 RACQYMDSYTIHTKLLGIYEISEKFDKAAELFKATAKKFGGEKVSIWVSWGDFLISHNEE 1598

Query:   261 GNADLIRETYERAIA---NIPPT-KFAELESLLGDMERARAIYE-LAISQP-RLDMPELV 314
               A  I     +A+    +I    KFA+LE   GD ER R+++E L    P R+D+    
Sbjct:  1599 QEARTILGNALKALPKRNHIEVVRKFAQLEFAKGDPERGRSLFEGLVADAPKRIDL---- 1654

Query:   315 WKAYIDFEVGQGERDKVRELHERLLERTV---HVKVWMN-YAQFEMSSGDEDSVSLAR 368
             W  Y+D EV   ++ KV +L ER++ + +     K + N + QFE S GDE ++   +
Sbjct:  1655 WNVYVDQEVKAKDKKKVEDLFERIITKKITRKQAKFFFNKWLQFEESEGDEKTIEYVK 1712


>POMBASE|SPBC211.02c [details] [associations]
            symbol:cwf3 "complexed with Cdc5 protein Cwf3"
            species:4896 "Schizosaccharomyces pombe" [GO:0003674
            "molecular_function" evidence=ND] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0044732 "mitotic spindle
            pole body" evidence=IDA] [GO:0045292 "mRNA cis splicing, via
            spliceosome" evidence=IC] InterPro:IPR003107 InterPro:IPR008847
            InterPro:IPR011990 Pfam:PF05843 SMART:SM00386 PomBase:SPBC211.02c
            GO:GO:0005829 GO:GO:0044732 EMBL:CU329671 GenomeReviews:CU329671_GR
            GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10 GO:GO:0045292
            eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133
            OrthoDB:EOG4DBXP7 EMBL:AF251149 PIR:T50337 RefSeq:NP_596612.1
            ProteinModelPortal:Q9P7R9 IntAct:Q9P7R9 STRING:Q9P7R9
            EnsemblFungi:SPBC211.02c.1 GeneID:2540753 KEGG:spo:SPBC211.02c
            NextBio:20801873 Uniprot:Q9P7R9
        Length = 790

 Score = 144 (55.7 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 70/261 (26%), Positives = 120/261 (45%)

Query:   114 MRELVFEEQNGFVSGARKVYERAVEF--------FGEENL-DEKLFI--AFAKFEEGQRE 162
             M  L  EE  G +   RK+Y+R  E             NL +E  +   +F  +E G   
Sbjct:   484 MYYLDLEESVGTIETTRKLYDRVFELKIATPQVVVNYANLLEENAYFEDSFKIYERGVAL 543

Query:   163 -KYGDRAGIEDVIVSK--RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYG 219
               Y     + ++ ++K  +++Q    ER R +++ AL+  P + +  IY  Y   E+K+G
Sbjct:   544 FSYPVAFELWNLYLTKFVKRYQGTHMERTRDLFEQALEGCPPEFSKSIYLLYADFEEKFG 603

Query:   220 DRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG-NADLI--RETYERAIAN 276
                       +KR     E+        D    Y  LL     N  ++  R  YE+AI +
Sbjct:   604 K---------AKRSISILEKAADKVKTADRLAIYNVLLVKVALNYGVLATRTVYEKAIES 654

Query:   277 IPPT-------KFAELESLLGDMERARAIYELAISQ---PRLDMPELVWKAYIDFEVGQG 326
             +  +       +FAE+E+ LG+++RAR IY +  SQ   PR++     WKA+ +FE+  G
Sbjct:   655 LSDSEVKDMCLRFAEMETKLGEIDRARLIY-IHGSQYCDPRVETD--YWKAWQEFEIRYG 711

Query:   327 ERDK-VRELHERLLERTVHVK 346
               ++ V+E+    ++R+V  K
Sbjct:   712 NPEETVKEMLR--IKRSVQTK 730


>UNIPROTKB|F6RY07 [details] [associations]
            symbol:XAB2 "Uncharacterized protein" species:9913 "Bos
            taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006283 "transcription-coupled nucleotide-excision repair"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
            GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
            GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 OMA:PRSYKLW
            GeneTree:ENSGT00550000075140 EMBL:DAAA02019501 IPI:IPI00700985
            Ensembl:ENSBTAT00000015097 Uniprot:F6RY07
        Length = 855

 Score = 143 (55.4 bits), Expect = 2.3e-06, P = 2.3e-06
 Identities = 65/259 (25%), Positives = 117/259 (45%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V +R  +  E        YD +  Y++   +       R 
Sbjct:   597 LLYAQLEEEWG--LARHAMAVYERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRS 650

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   651 IYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 708

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D +RE+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   709 DFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 768

Query:   368 RRVFERANQALKASSEKEE 386
              ++ E+  + L A +E+++
Sbjct:   769 MKLLEQRAEQLAAEAERDQ 787


>UNIPROTKB|A7MB10 [details] [associations]
            symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
            taurus" [GO:0005730 "nucleolus" evidence=IEA] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
            InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
            PROSITE:PS50126 SMART:SM00386 GO:GO:0005730 GO:GO:0006397
            GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
            SMART:SM00316 EMBL:BC151277 IPI:IPI00867038 RefSeq:NP_001095573.1
            UniGene:Bt.23141 ProteinModelPortal:A7MB10 SMR:A7MB10 PRIDE:A7MB10
            GeneID:526867 KEGG:bta:526867 CTD:22984 eggNOG:COG0539
            HOGENOM:HOG000088607 HOVERGEN:HBG108419 KO:K14792 NextBio:20874464
            Uniprot:A7MB10
        Length = 1874

 Score = 146 (56.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 47/163 (28%), Positives = 68/163 (41%)

Query:   224 IEDVIVSKRKFQ-----YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + D+     KFQ     Y   +         W  Y   L   G A+      +RA+  +P
Sbjct:  1700 LADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLP 1759

Query:   279 P-------TKFAELESLLGDMERARAIYE--LAISQPRLDMPELVWKAYIDFEVGQGERD 329
                      KFA+LE  LGD ERARAI+E  L+I   R D    VW  YID  +  G + 
Sbjct:  1760 KKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD----VWSVYIDMIIKHGSQK 1815

Query:   330 KVRELHERLLERTVHVK----VWMNYAQFEMSSGDEDSVSLAR 368
             + R + ER++  ++  K     +  Y  +E   G E  V   +
Sbjct:  1816 EARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVK 1858


>UNIPROTKB|G5E5C4 [details] [associations]
            symbol:PDCD11 "Protein RRP5 homolog" species:9913 "Bos
            taurus" [GO:0008134 "transcription factor binding" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR003029
            InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
            PROSITE:PS50293 SMART:SM00386 GO:GO:0005829 GO:GO:0005634
            GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            UniGene:Bt.23141 OMA:LHLADIY GeneTree:ENSGT00390000012228
            EMBL:DAAA02059036 EMBL:DAAA02059037 Ensembl:ENSBTAT00000012818
            Uniprot:G5E5C4
        Length = 1874

 Score = 146 (56.5 bits), Expect = 2.7e-06, P = 2.7e-06
 Identities = 47/163 (28%), Positives = 68/163 (41%)

Query:   224 IEDVIVSKRKFQ-----YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + D+     KFQ     Y   +         W  Y   L   G A+      +RA+  +P
Sbjct:  1700 LADIYTKSEKFQEAGELYNRMLKRFRQEKAVWVKYGAFLLRRGKAEASHRVMQRALECLP 1759

Query:   279 P-------TKFAELESLLGDMERARAIYE--LAISQPRLDMPELVWKAYIDFEVGQGERD 329
                      KFA+LE  LGD ERARAI+E  L+I   R D    VW  YID  +  G + 
Sbjct:  1760 KKEHVDVIAKFAQLEFQLGDAERARAIFESTLSIYPKRTD----VWSVYIDMIIKHGSQK 1815

Query:   330 KVRELHERLLERTVHVK----VWMNYAQFEMSSGDEDSVSLAR 368
             + R + ER++  ++  K     +  Y  +E   G E  V   +
Sbjct:  1816 EARAIFERVIHLSLAPKRMKFFFKRYLDYEKQHGSEKDVQAVK 1858


>MGI|MGI:1914689 [details] [associations]
            symbol:Xab2 "XPA binding protein 2" species:10090 "Mus
            musculus" [GO:0001824 "blastocyst development" evidence=IMP]
            [GO:0003674 "molecular_function" evidence=ND] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006281 "DNA
            repair" evidence=IEA] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=ISO] [GO:0006351
            "transcription, DNA-dependent" evidence=ISO] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0006397 "mRNA processing"
            evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
            evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013
            "catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            SMART:SM00386 MGI:MGI:1914689 GO:GO:0008380 GO:GO:0006397
            GO:GO:0006351 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
            GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
            KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 CTD:56949
            HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ EMBL:AK002890 EMBL:AK008628
            EMBL:BC021341 IPI:IPI00120744 RefSeq:NP_080432.1 UniGene:Mm.23739
            ProteinModelPortal:Q9DCD2 SMR:Q9DCD2 STRING:Q9DCD2
            PhosphoSite:Q9DCD2 PaxDb:Q9DCD2 PRIDE:Q9DCD2
            Ensembl:ENSMUST00000019614 GeneID:67439 KEGG:mmu:67439
            UCSC:uc009kry.1 GeneTree:ENSGT00550000075140 InParanoid:Q9DCD2
            NextBio:324566 Bgee:Q9DCD2 CleanEx:MM_XAB2 Genevestigator:Q9DCD2
            GermOnline:ENSMUSG00000019470 Uniprot:Q9DCD2
        Length = 855

 Score = 142 (55.0 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 76/306 (24%), Positives = 137/306 (44%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V  R  +  E        YD +  Y++   +       R 
Sbjct:   597 LLYAQLEEEWG--LARHAMAVYDRATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRG 650

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   651 IYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 708

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D +RE+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   709 DFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 768

Query:   368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK-KRVKTYN 426
              ++ E+  + L A +E+++        K F  +   D SR +L ++L ++A  + ++   
Sbjct:   769 MKLLEQRAEQLAAEAERDQPPRAQS--KIFFVR--SDASREEL-AELAQQANPEEIQLGE 823

Query:   427 DEGVEE 432
             DE  +E
Sbjct:   824 DEDEDE 829


>RGD|621217 [details] [associations]
            symbol:Xab2 "XPA binding protein 2" species:10116 "Rattus
            norvegicus" [GO:0001824 "blastocyst development" evidence=IEA;ISO]
            [GO:0006283 "transcription-coupled nucleotide-excision repair"
            evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
            evidence=ISO;ISS] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0071013 "catalytic
            step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            SMART:SM00386 RGD:621217 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
            GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
            HOGENOM:HOG000176133 CTD:56949 HOVERGEN:HBG024066 OrthoDB:EOG4G4GPQ
            GeneTree:ENSGT00550000075140 EMBL:AF277899 EMBL:BC081723
            IPI:IPI00201089 RefSeq:NP_620809.1 UniGene:Rn.24921
            ProteinModelPortal:Q99PK0 STRING:Q99PK0 Ensembl:ENSRNOT00000001309
            GeneID:245976 KEGG:rno:245976 UCSC:RGD:621217 InParanoid:Q99PK0
            NextBio:623254 Genevestigator:Q99PK0 GermOnline:ENSRNOG00000000988
            Uniprot:Q99PK0
        Length = 855

 Score = 142 (55.0 bits), Expect = 2.9e-06, P = 2.9e-06
 Identities = 76/306 (24%), Positives = 137/306 (44%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFISRYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V  R  +  E        YD +  Y++   +       R 
Sbjct:   597 LLYAQLEEEWG--LARHAMAVYDRATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRG 650

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   651 IYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 708

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D +RE+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   709 DFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 768

Query:   368 RRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAK-KRVKTYN 426
              ++ E+  + L A +E+++        K F  +   D SR +L ++L ++A  + ++   
Sbjct:   769 MKLLEQRAEQLAAEAERDQPPRAQS--KIFFVR--SDASREEL-AELAQQANPEEIQLGE 823

Query:   427 DEGVEE 432
             DE  +E
Sbjct:   824 DEDEDE 829


>UNIPROTKB|J9PAI6 [details] [associations]
            symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005622 "intracellular" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0005622
            GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
            GeneTree:ENSGT00550000075140 EMBL:AAEX03012459
            Ensembl:ENSCAFT00000044264 Uniprot:J9PAI6
        Length = 799

 Score = 141 (54.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 65/259 (25%), Positives = 117/259 (45%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V +R  +  E        YD +  Y++   +       R 
Sbjct:   597 LLYAQLEEEWG--LARHAMAVYERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRG 650

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   651 IYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 708

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D +RE+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   709 DFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 768

Query:   368 RRVFERANQALKASSEKEE 386
              ++ E+  + L A +E+++
Sbjct:   769 MKLLEQRAEQLAAEAERDQ 787


>UNIPROTKB|E2RPV4 [details] [associations]
            symbol:XAB2 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
            evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
            evidence=IEA] [GO:0006283 "transcription-coupled
            nucleotide-excision repair" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
            PROSITE:PS50293 SMART:SM00386 GO:GO:0006351 GO:GO:0006396
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0071013
            GO:GO:0001824 GO:GO:0006283 KO:K12867 CTD:56949
            GeneTree:ENSGT00550000075140 EMBL:AAEX03012459 RefSeq:XP_542113.3
            ProteinModelPortal:E2RPV4 Ensembl:ENSCAFT00000029071 GeneID:484995
            KEGG:cfa:484995 OMA:RRYLMYD NextBio:20859059 Uniprot:E2RPV4
        Length = 855

 Score = 141 (54.7 bits), Expect = 3.7e-06, P = 3.7e-06
 Identities = 65/259 (25%), Positives = 117/259 (45%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V +R  +  E        YD +  Y++   +       R 
Sbjct:   597 LLYAQLEEEWG--LARHAMAVYERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRG 650

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   651 IYQKAIEVLSDEHAREMCLRFADMECRLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 708

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D +RE+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   709 DFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 768

Query:   368 RRVFERANQALKASSEKEE 386
              ++ E+  + L A +E+++
Sbjct:   769 MKLLEQRAEQLAAEAERDQ 787


>UNIPROTKB|F1SCH5 [details] [associations]
            symbol:XAB2 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IEA]
            [GO:0006283 "transcription-coupled nucleotide-excision repair"
            evidence=IEA] [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            PROSITE:PS50005 PROSITE:PS50293 SMART:SM00386 GO:GO:0006351
            GO:GO:0006396 Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719
            GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 KO:K12867 OMA:PRSYKLW
            CTD:56949 GeneTree:ENSGT00550000075140 EMBL:CU929919
            RefSeq:XP_003123199.1 UniGene:Ssc.48349 Ensembl:ENSSSCT00000014834
            GeneID:100525328 KEGG:ssc:100525328 Uniprot:F1SCH5
        Length = 855

 Score = 140 (54.3 bits), Expect = 4.8e-06, P = 4.8e-06
 Identities = 65/261 (24%), Positives = 117/261 (44%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS-NPNN-YDAWFDYLRLLEDEGNADLI 266
               Y   E+++G        +       YE    +  P+  YD +  Y++   +       
Sbjct:   597 LLYAQLEEEWG--------LARHAMAVYERATRAVEPSQQYDMFNIYIKRAAEIYGVTHT 648

Query:   267 RETYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKA 317
             R  Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ 
Sbjct:   649 RGIYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT--GAFWQT 706

Query:   318 YIDFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA------ 367
             + DFEV  G  D +RE+    R ++ T + +V +M     ++S     +VS LA      
Sbjct:   707 WKDFEVRHGNEDTIREMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGM 766

Query:   368 --RRVFERANQALKASSEKEE 386
                ++ E+  + L A +E+++
Sbjct:   767 DDMKLLEQRAEQLAAEAERDQ 787


>WB|WBGene00002850 [details] [associations]
            symbol:let-716 species:6239 "Caenorhabditis elegans"
            [GO:0005622 "intracellular" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
            [GO:0002119 "nematode larval development" evidence=IMP] [GO:0040010
            "positive regulation of growth rate" evidence=IMP] [GO:0009792
            "embryo development ending in birth or egg hatching" evidence=IMP]
            [GO:0018991 "oviposition" evidence=IMP] [GO:0008406 "gonad
            development" evidence=IMP] [GO:0007276 "gamete generation"
            evidence=IMP] InterPro:IPR003029 InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 PROSITE:PS50126
            PROSITE:PS50293 SMART:SM00386 GO:GO:0009792 GO:GO:0040007
            GO:GO:0018991 GO:GO:0040010 GO:GO:0008406 GO:GO:0002119
            GO:GO:0003723 GO:GO:0005622 GO:GO:0006396 Gene3D:1.25.40.10
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0007276
            InterPro:IPR022967 SMART:SM00316 EMBL:FO080367 eggNOG:COG0539
            KO:K14792 GeneTree:ENSGT00390000012228 PIR:E88481
            RefSeq:NP_498398.1 ProteinModelPortal:Q18038 SMR:Q18038
            STRING:Q18038 PaxDb:Q18038 EnsemblMetazoa:C16A3.3 GeneID:175906
            KEGG:cel:CELE_C16A3.3 CTD:175906 WormBase:C16A3.3
            HOGENOM:HOG000018736 InParanoid:Q18038 OMA:NMEVAYG NextBio:890242
            Uniprot:Q18038
        Length = 1743

 Score = 142 (55.0 bits), Expect = 6.8e-06, P = 6.8e-06
 Identities = 58/257 (22%), Positives = 108/257 (42%)

Query:   176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQ 235
             ++ + + EE E    +    +D    D   E+       E +  D   IE  ++ K +  
Sbjct:  1421 AEEESEEEEEEDEEEVEDEEVDEDASDEEEEVDG----EEDESDDEENIE--LIEKSEED 1474

Query:   236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL---------- 285
             +   V S+PN+   W +Y+    ++ +    R+T E A+  I PT+  EL          
Sbjct:  1475 HSRLVRSDPNSAINWIEYMSHFIEKSDLAAARKTAEEALGAINPTESDELLKIWTAYLNM 1534

Query:   286 ESLLGDMERARAIYELAISQPRL-DMPELVWKAYIDFEVGQGERDKVRELHERLLERTVH 344
             E   GD    + ++E A        + + + K Y  FE        + ++ ++   R   
Sbjct:  1535 EVAYGDAATVQKVFERACKNANAYTVHKTLSKIYQKFEKNAEATQILEQMVKKF--RANQ 1592

Query:   345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDD 404
             ++VW   A+  M+  D+ +   AR +  RA   LK++ + ++ V L+  + + E +HGD 
Sbjct:  1593 LEVWTLLAEHLMTQNDQKA---ARELLPRA---LKSAPKAQQHVQLISKFAQLEFKHGDA 1646

Query:   405 E-SRAKLNSKLPRRAKK 420
             E  R  L   +    KK
Sbjct:  1647 ERGRTLLEGLVTAHPKK 1663


>UNIPROTKB|E1C8G8 [details] [associations]
            symbol:PRPF39 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0006396 "RNA processing" evidence=IEA]
            [GO:0005634 "nucleus" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
            Gene3D:1.25.40.10 GeneTree:ENSGT00390000005033 OMA:GWVYLLQ
            EMBL:AADN02004089 IPI:IPI00598251 Ensembl:ENSGALT00000020376
            Uniprot:E1C8G8
        Length = 628

 Score = 105 (42.0 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 30/100 (30%), Positives = 50/100 (50%)

Query:   315 WKAYIDFEVGQGERDKVRELHER-LLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             WK Y++FE+  G  ++V  L ER ++   ++   W+ YA++     +  S+   R V+ R
Sbjct:   316 WKEYLEFEIENGTHERVVVLFERCVISCALYEDFWIKYAKYM----ENHSIEGVRHVYSR 371

Query:   374 ANQALKASSEKEERVMLLEAWKEFEAQHGD-DESRAKLNS 412
             A         K+  V +L  W  FE Q G+ DE+R  L +
Sbjct:   372 A---CTIHLPKKPMVHML--WAAFEEQQGNIDEARRILKT 406

 Score = 75 (31.5 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
 Identities = 19/87 (21%), Positives = 41/87 (47%)

Query:   240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLGDMER 294
             V  NP ++  W   L+ +E E +    R+ +++   + P       K+A+LE    ++++
Sbjct:    48 VEDNPQDFTGWVYLLQYVEQENHLPAARKAFDKFFTHYPYCYGYWKKYADLERRHDNIKQ 107

Query:   295 ARAIYELAISQPRLDMPELVWKAYIDF 321
             +  +Y   +    L +   +W  YI+F
Sbjct:   108 SDEVYRRGLQAIPLSVD--LWIHYINF 132


>UNIPROTKB|F1PV57 [details] [associations]
            symbol:PRPF39 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396
            "RNA processing" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 SMART:SM00386 GO:GO:0005634 GO:GO:0006396
            Gene3D:1.25.40.10 CTD:55015 GeneTree:ENSGT00390000005033 KO:K13217
            OMA:GWVYLLQ EMBL:AAEX03005706 RefSeq:XP_851059.2
            Ensembl:ENSCAFT00000022300 GeneID:480305 KEGG:cfa:480305
            Uniprot:F1PV57
        Length = 667

 Score = 104 (41.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%)

Query:   315 WKAYIDFEVGQGERDKVRELHER-LLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             WK Y++FE+  G  ++V  L ER ++   ++ + W+ YA++     +  S+   R VF R
Sbjct:   354 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYM----ENHSIEGVRHVFSR 409

Query:   374 ANQALKASSEKEERVMLLEAWKEFEAQHGD-DESR 407
             A         K+  V +L  W  FE Q G+ +E+R
Sbjct:   410 A---CTIHLPKKPMVHML--WAAFEEQQGNINEAR 439

 Score = 75 (31.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 19/92 (20%), Positives = 45/92 (48%)

Query:   235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
             ++ + V +NP ++  W   L+ +E E +    R+ +++   + P       K+A+LE   
Sbjct:    81 KFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRH 140

Query:   290 GDMERARAIYELAISQPRLDMPELVWKAYIDF 321
              +++++  +Y   +    L +   +W  YI+F
Sbjct:   141 DNIKQSDEVYRRGLQAIPLSVD--LWIHYINF 170


>UNIPROTKB|F1SI15 [details] [associations]
            symbol:PRPF39 "Uncharacterized protein" species:9823 "Sus
            scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0006396 "RNA
            processing" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
            SMART:SM00386 GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10
            GeneTree:ENSGT00390000005033 OMA:GWVYLLQ EMBL:CU570961
            Ensembl:ENSSSCT00000005511 Uniprot:F1SI15
        Length = 667

 Score = 104 (41.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%)

Query:   315 WKAYIDFEVGQGERDKVRELHER-LLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             WK Y++FE+  G  ++V  L ER ++   ++ + W+ YA++     +  S+   R VF R
Sbjct:   355 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYM----ENHSIEGVRHVFSR 410

Query:   374 ANQALKASSEKEERVMLLEAWKEFEAQHGD-DESR 407
             A         K+  V +L  W  FE Q G+ +E+R
Sbjct:   411 A---CTIHLPKKPMVHML--WAAFEEQQGNINEAR 440

 Score = 75 (31.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 19/92 (20%), Positives = 45/92 (48%)

Query:   235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
             ++ + V +NP ++  W   L+ +E E +    R+ +++   + P       K+A+LE   
Sbjct:    81 KFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRH 140

Query:   290 GDMERARAIYELAISQPRLDMPELVWKAYIDF 321
              +++++  +Y   +    L +   +W  YI+F
Sbjct:   141 DNIKQSDEVYRRGLQAIPLSVD--LWIHYINF 170


>UNIPROTKB|Q86UA1 [details] [associations]
            symbol:PRPF39 "Pre-mRNA-processing factor 39" species:9606
            "Homo sapiens" [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634 "nucleus"
            evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
            InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 GO:GO:0005634
            GO:GO:0008380 GO:GO:0006397 Gene3D:1.25.40.10 eggNOG:COG5107
            EMBL:AL121809 CTD:55015 HOGENOM:HOG000010277 HOVERGEN:HBG082194
            KO:K13217 OMA:GWVYLLQ OrthoDB:EOG49GKG9 EMBL:AK001990 EMBL:BC051886
            EMBL:BC125126 EMBL:BC125127 IPI:IPI00789246 IPI:IPI00878754
            RefSeq:NP_060392.3 UniGene:Hs.274337 ProteinModelPortal:Q86UA1
            SMR:Q86UA1 IntAct:Q86UA1 STRING:Q86UA1 PhosphoSite:Q86UA1
            DMDM:223590245 PaxDb:Q86UA1 PRIDE:Q86UA1 Ensembl:ENST00000355765
            GeneID:55015 KEGG:hsa:55015 UCSC:uc001wvy.4 UCSC:uc001wwa.1
            GeneCards:GC14P045553 H-InvDB:HIX0011621 HGNC:HGNC:20314
            HPA:HPA001176 MIM:614907 neXtProt:NX_Q86UA1 PharmGKB:PA142671127
            InParanoid:Q86UA1 GenomeRNAi:55015 NextBio:58381
            ArrayExpress:Q86UA1 Bgee:Q86UA1 CleanEx:HS_PRPF39
            Genevestigator:Q86UA1 GermOnline:ENSG00000185246 Uniprot:Q86UA1
        Length = 669

 Score = 104 (41.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 29/95 (30%), Positives = 49/95 (51%)

Query:   315 WKAYIDFEVGQGERDKVRELHER-LLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             WK Y++FE+  G  ++V  L ER ++   ++ + W+ YA++     +  S+   R VF R
Sbjct:   356 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYM----ENHSIEGVRHVFSR 411

Query:   374 ANQALKASSEKEERVMLLEAWKEFEAQHGD-DESR 407
             A         K+  V +L  W  FE Q G+ +E+R
Sbjct:   412 A---CTIHLPKKPMVHML--WAAFEEQQGNINEAR 441

 Score = 75 (31.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
 Identities = 20/92 (21%), Positives = 44/92 (47%)

Query:   235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
             ++ + V +NP ++  W   L+ +E E +    R+ ++R   + P       K+A+LE   
Sbjct:    83 KFWKTVENNPQDFTGWVYLLQYVEQENHLMAARKAFDRFFIHYPYCYGYWKKYADLEKRH 142

Query:   290 GDMERARAIYELAISQPRLDMPELVWKAYIDF 321
              +++ +  +Y   +    L +   +W  YI+F
Sbjct:   143 DNIKPSDEVYRRGLQAIPLSVD--LWIHYINF 172


>ASPGD|ASPL0000052140 [details] [associations]
            symbol:AN0111 species:162425 "Emericella nidulans"
            [GO:0003674 "molecular_function" evidence=ND] [GO:0006396 "RNA
            processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
            evidence=IEA] [GO:0044732 "mitotic spindle pole body" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] InterPro:IPR003107
            InterPro:IPR011990 InterPro:IPR013026 InterPro:IPR019734
            Pfam:PF13181 SMART:SM00386 GO:GO:0008380 EMBL:BN001308
            GO:GO:0006397 GO:GO:0005681 GO:GO:0007049 Gene3D:1.25.40.10
            EMBL:AACD01000004 eggNOG:NOG289100 KO:K12867 OMA:PRSYKLW
            RefSeq:XP_657715.1 ProteinModelPortal:Q5BH69 STRING:Q5BH69
            EnsemblFungi:CADANIAT00002638 GeneID:2875887 KEGG:ani:AN0111.2
            HOGENOM:HOG000176133 OrthoDB:EOG4DBXP7 Uniprot:Q5BH69
        Length = 851

 Score = 134 (52.2 bits), Expect = 2.2e-05, P = 2.2e-05
 Identities = 61/226 (26%), Positives = 98/226 (43%)

Query:   186 ERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPN 245
             ER R +++ ALD  P      +Y  Y   E++ G          + R ++      S+ +
Sbjct:   598 ERLRDLFEQALDGCPPKFARPLYLMYGNLEEERGLARH------AMRIYERATRAVSDED 651

Query:   246 NYDAWFDYLRLLEDEGNADLIRETYERAIANIPP-------TKFAELESLLGDMERARAI 298
              ++ +  Y+            R  YERAIA +P         KFAE+E  LG+++RARAI
Sbjct:   652 RFEMFEFYITKSASNFGLPSTRPIYERAIAALPDHEAKEMCLKFAEMERRLGEIDRARAI 711

Query:   299 YELA--ISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEM 356
             Y  A     PR + P   W+ +  FEV  G  D  +E+    ++R+V        AQ+  
Sbjct:   712 YGHASQFCDPRTNAP--FWQKWEAFEVQHGNEDTFKEMLR--IKRSVQ-------AQYNT 760

Query:   357 SSGDEDSVSLARRVFERA--NQALKASSEKEERVMLLEAWKEFEAQ 400
                   S ++AR   +RA   +   A++E+E      +A    E Q
Sbjct:   761 DVNFIASQAIARSQ-QRAPEGEEATAAAEREMDTETTDAMAALERQ 805


>UNIPROTKB|Q14690 [details] [associations]
            symbol:PDCD11 "Protein RRP5 homolog" species:9606 "Homo
            sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
            processing" evidence=IEA] [GO:0006364 "rRNA processing"
            evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0005730
            "nucleolus" evidence=IEA] [GO:0008134 "transcription factor
            binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
            [GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003029
            InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
            SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0005730
            EMBL:CH471066 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249 EMBL:AL591408
            GO:GO:0006364 EMBL:AL139339 InterPro:IPR022967 SMART:SM00316
            CTD:22984 eggNOG:COG0539 HOGENOM:HOG000088607 HOVERGEN:HBG108419
            KO:K14792 EMBL:D80007 EMBL:AL603983 EMBL:BC049838 EMBL:BC064486
            EMBL:BC080560 EMBL:BC111040 EMBL:AY007124 IPI:IPI00400922
            RefSeq:NP_055791.1 UniGene:Hs.239499 PDB:1WI5 PDBsum:1WI5
            ProteinModelPortal:Q14690 SMR:Q14690 IntAct:Q14690
            MINT:MINT-1388150 STRING:Q14690 PhosphoSite:Q14690 DMDM:145559523
            SWISS-2DPAGE:Q14690 PaxDb:Q14690 PRIDE:Q14690 DNASU:22984
            Ensembl:ENST00000369797 GeneID:22984 KEGG:hsa:22984 UCSC:uc001kwy.1
            GeneCards:GC10P105156 H-InvDB:HIX0009176 HGNC:HGNC:13408
            HPA:CAB026472 HPA:HPA017924 MIM:612333 neXtProt:NX_Q14690
            PharmGKB:PA134909758 InParanoid:Q14690 OMA:LHLADIY
            OrthoDB:EOG4XKV63 PhylomeDB:Q14690 ChiTaRS:PDCD11
            EvolutionaryTrace:Q14690 GenomeRNAi:22984 NextBio:43819
            ArrayExpress:Q14690 Bgee:Q14690 CleanEx:HS_PDCD11
            Genevestigator:Q14690 GermOnline:ENSG00000148843 Uniprot:Q14690
        Length = 1871

 Score = 137 (53.3 bits), Expect = 2.6e-05, P = 2.6e-05
 Identities = 46/163 (28%), Positives = 67/163 (41%)

Query:   224 IEDVIVSKRKFQ-----YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + D+     KFQ     Y   +         W  Y   L     A       +RA+  +P
Sbjct:  1697 LADIYAKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRSQAAASHRVLQRALECLP 1756

Query:   279 P-------TKFAELESLLGDMERARAIYELAISQ-P-RLDMPELVWKAYIDFEVGQGERD 329
                      KFA+LE  LGD ERA+AI+E  +S  P R D    VW  YID  +  G + 
Sbjct:  1757 SKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD----VWSVYIDMTIKHGSQK 1812

Query:   330 KVRELHERLLERTVHVK----VWMNYAQFEMSSGDEDSVSLAR 368
              VR++ ER++  ++  K     +  Y  +E   G E  V   +
Sbjct:  1813 DVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVK 1855


>RGD|1308702 [details] [associations]
            symbol:Prpf39 "PRP39 pre-mRNA processing factor 39 homolog (S.
            cerevisiae)" species:10116 "Rattus norvegicus" [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0005730 "nucleolus" evidence=ISO]
            InterPro:IPR003107 InterPro:IPR011990 SMART:SM00386 RGD:1308702
            GO:GO:0005634 GO:GO:0006396 Gene3D:1.25.40.10 CTD:55015
            GeneTree:ENSGT00390000005033 KO:K13217 OrthoDB:EOG49GKG9
            IPI:IPI00948194 RefSeq:XP_003750219.1 RefSeq:XP_003754228.1
            UniGene:Rn.12521 Ensembl:ENSRNOT00000066702 GeneID:314171
            KEGG:rno:314171 UCSC:RGD:1308702 ArrayExpress:D4A5S9 Uniprot:D4A5S9
        Length = 664

 Score = 102 (41.0 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
 Identities = 29/100 (29%), Positives = 50/100 (50%)

Query:   315 WKAYIDFEVGQGERDKVRELHER-LLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
             WK Y++FE+  G  ++V  L ER ++   ++ + W+ YA++     +  S+   R VF R
Sbjct:   353 WKEYLEFEIENGTHERVVVLFERCVISCALYEEFWIKYAKYM----ENHSIEGVRHVFSR 408

Query:   374 ANQALKASSEKEERVMLLEAWKEFEAQHGD-DESRAKLNS 412
             A         K+    +L  W  FE Q G+ +E+R  L +
Sbjct:   409 A---CTVHLPKKPMAHML--WAAFEEQQGNINEARIILRT 443

 Score = 75 (31.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
 Identities = 19/92 (20%), Positives = 45/92 (48%)

Query:   235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
             ++ + V +NP ++  W   L+ +E E +    R+ +++   + P       K+A+LE   
Sbjct:    80 KFWKTVETNPQDFTGWVYLLQYVEQENHLMAARKAFDKFFIHYPYCYGYWKKYADLEKRH 139

Query:   290 GDMERARAIYELAISQPRLDMPELVWKAYIDF 321
              +++++  +Y   +    L +   +W  YI+F
Sbjct:   140 DNIKQSDEVYRRGLQAIPLSVD--LWIHYINF 169


>MGI|MGI:1341788 [details] [associations]
            symbol:Pdcd11 "programmed cell death 11" species:10090 "Mus
            musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
            "intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
            [GO:0005829 "cytosol" evidence=IDA] [GO:0006355 "regulation of
            transcription, DNA-dependent" evidence=TAS] [GO:0006364 "rRNA
            processing" evidence=IEA] [GO:0006396 "RNA processing"
            evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
            [GO:0006915 "apoptotic process" evidence=TAS] [GO:0008134
            "transcription factor binding" evidence=ISO] [GO:0043123 "positive
            regulation of I-kappaB kinase/NF-kappaB cascade" evidence=TAS]
            InterPro:IPR003029 InterPro:IPR003107 InterPro:IPR008847
            InterPro:IPR011990 InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843
            PROSITE:PS50126 SMART:SM00386 MGI:MGI:1341788 GO:GO:0005829
            GO:GO:0006915 GO:GO:0005730 GO:GO:0006355 GO:GO:0043123
            GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 GO:GO:0006364 InterPro:IPR022967
            SMART:SM00316 CTD:22984 eggNOG:COG0539 HOVERGEN:HBG108419 KO:K14792
            OMA:LHLADIY OrthoDB:EOG4XKV63 EMBL:AK129080 EMBL:BC038503
            EMBL:BC055276 EMBL:BC070468 EMBL:AK003899 EMBL:AK141450
            EMBL:AK147950 EMBL:AK161803 EMBL:AF055668 EMBL:AF055669
            IPI:IPI00551454 RefSeq:NP_035183.2 UniGene:Mm.41166 HSSP:Q14690
            ProteinModelPortal:Q6NS46 SMR:Q6NS46 STRING:Q6NS46
            PhosphoSite:Q6NS46 PaxDb:Q6NS46 PRIDE:Q6NS46 DNASU:18572
            Ensembl:ENSMUST00000072141 GeneID:18572 KEGG:mmu:18572
            UCSC:uc008hup.1 GeneTree:ENSGT00390000012228 InParanoid:Q9CTD8
            NextBio:294412 Bgee:Q6NS46 Genevestigator:Q6NS46 Uniprot:Q6NS46
        Length = 1862

 Score = 134 (52.2 bits), Expect = 5.4e-05, P = 5.4e-05
 Identities = 40/132 (30%), Positives = 60/132 (45%)

Query:   250 WFDYLRLLEDEGNADLIRETYERAIANIPP-------TKFAELESLLGDMERARAIYELA 302
             W  Y   +     A       +RA+  +P         KFA+LE  LGD+ERA+AI+E  
Sbjct:  1719 WIKYGAFVLGRSQAGASHRVLQRALECLPAKEHVDVIVKFAQLEFQLGDVERAKAIFENT 1778

Query:   303 ISQ-P-RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK----VWMNYAQFEM 356
             +S  P R D    VW  YID  +  G +  VR++ ER++  ++  K     +  Y  +E 
Sbjct:  1779 LSTYPKRTD----VWSVYIDMTIKHGSQTAVRDIFERVIHLSLAPKRMKFFFKRYLDYEK 1834

Query:   357 SSGDEDSVSLAR 368
               G E  V   +
Sbjct:  1835 QHGTEKDVQAVK 1846


>UNIPROTKB|F5H315 [details] [associations]
            symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
            "Homo sapiens" [GO:0005622 "intracellular" evidence=IEA]
            [GO:0006396 "RNA processing" evidence=IEA] [GO:0001824 "blastocyst
            development" evidence=IEA] InterPro:IPR003107 InterPro:IPR011990
            InterPro:IPR013026 InterPro:IPR019734 PROSITE:PS50005
            PROSITE:PS50293 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0001824
            EMBL:AC008763 HGNC:HGNC:14089 ChiTaRS:XAB2 IPI:IPI01015328
            ProteinModelPortal:F5H315 SMR:F5H315 Ensembl:ENST00000534844
            ArrayExpress:F5H315 Bgee:F5H315 Uniprot:F5H315
        Length = 852

 Score = 138 (53.6 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 64/259 (24%), Positives = 117/259 (45%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   534 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLY 593

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V +R  +  E        YD +  Y++   +       R 
Sbjct:   594 LLYAQLEEEWG--LARHAMAVYERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRG 647

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   648 IYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 705

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D ++E+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   706 DFEVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 765

Query:   368 RRVFERANQALKASSEKEE 386
              ++ E+  + L A +E+++
Sbjct:   766 MKLLEQRAEQLAAEAERDQ 784

 Score = 37 (18.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query:   378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             +++ + +EE   L +     E Q G+DE   +++
Sbjct:   795 VRSDASREELAELAQQVNPEEIQLGEDEDEDEMD 828


>UNIPROTKB|Q9HCS7 [details] [associations]
            symbol:XAB2 "Pre-mRNA-splicing factor SYF1" species:9606
            "Homo sapiens" [GO:0001824 "blastocyst development" evidence=IEA]
            [GO:0006351 "transcription, DNA-dependent" evidence=IDA]
            [GO:0006283 "transcription-coupled nucleotide-excision repair"
            evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
            [GO:0005634 "nucleus" evidence=IC] [GO:0000398 "mRNA splicing, via
            spliceosome" evidence=IC] [GO:0071013 "catalytic step 2
            spliceosome" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS]
            [GO:0006281 "DNA repair" evidence=TAS] [GO:0006289
            "nucleotide-excision repair" evidence=TAS] Reactome:REACT_216
            InterPro:IPR003107 InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 SMART:SM00386 GO:GO:0005654 GO:GO:0006351
            Gene3D:1.25.40.10 InterPro:IPR013105 Pfam:PF07719 GO:GO:0000398
            GO:GO:0071013 GO:GO:0001824 GO:GO:0006283 eggNOG:NOG289100
            KO:K12867 OMA:PRSYKLW HOGENOM:HOG000176133 EMBL:AB026111
            EMBL:AF226051 EMBL:AF258567 EMBL:AF547265 EMBL:BC007208
            EMBL:BC008778 EMBL:AK074035 EMBL:AB033003 IPI:IPI00163084
            RefSeq:NP_064581.2 UniGene:Hs.9822 ProteinModelPortal:Q9HCS7
            SMR:Q9HCS7 IntAct:Q9HCS7 MINT:MINT-1475513 STRING:Q9HCS7
            PhosphoSite:Q9HCS7 DMDM:25091548 PaxDb:Q9HCS7 PeptideAtlas:Q9HCS7
            PRIDE:Q9HCS7 DNASU:56949 Ensembl:ENST00000358368 GeneID:56949
            KEGG:hsa:56949 UCSC:uc002mgx.3 CTD:56949 GeneCards:GC19M007684
            HGNC:HGNC:14089 MIM:610850 neXtProt:NX_Q9HCS7 PharmGKB:PA134905925
            HOVERGEN:HBG024066 InParanoid:Q9HCS7 OrthoDB:EOG4G4GPQ ChiTaRS:XAB2
            GenomeRNAi:56949 NextBio:62545 ArrayExpress:Q9HCS7 Bgee:Q9HCS7
            CleanEx:HS_XAB2 Genevestigator:Q9HCS7 GermOnline:ENSG00000076924
            Uniprot:Q9HCS7
        Length = 855

 Score = 138 (53.6 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 64/259 (24%), Positives = 117/259 (45%)

Query:   152 AFAKFEEG-QREKYGDRAGIEDVIVSKRKFQY--EEHERARVIYKYALDHIPKDRTAEIY 208
             +F  +E G    K+ + + I    ++K   +Y   + ERAR +++ ALD  P      +Y
Sbjct:   537 SFKAYERGISLFKWPNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLY 596

Query:   209 KAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRE 268
               Y   E+++G       + V +R  +  E        YD +  Y++   +       R 
Sbjct:   597 LLYAQLEEEWG--LARHAMAVYERATRAVEPAQQ----YDMFNIYIKRAAEIYGVTHTRG 650

Query:   269 TYERAIANIPPT-------KFAELESLLGDMERARAIYELA--ISQPRLDMPELVWKAYI 319
              Y++AI  +          +FA++E  LG+++RARAIY     I  PR       W+ + 
Sbjct:   651 IYQKAIEVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTT--GAFWQTWK 708

Query:   320 DFEVGQGERDKVRELHE--RLLERTVHVKV-WMNYAQFEMSSGDEDSVS-LA-------- 367
             DFEV  G  D ++E+    R ++ T + +V +M     ++S     +VS LA        
Sbjct:   709 DFEVRHGNEDTIKEMLRIRRSVQATYNTQVNFMASQMLKVSGSATGTVSDLAPGQSGMDD 768

Query:   368 RRVFERANQALKASSEKEE 386
              ++ E+  + L A +E+++
Sbjct:   769 MKLLEQRAEQLAAEAERDQ 787

 Score = 37 (18.1 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
 Identities = 8/34 (23%), Positives = 18/34 (52%)

Query:   378 LKASSEKEERVMLLEAWKEFEAQHGDDESRAKLN 411
             +++ + +EE   L +     E Q G+DE   +++
Sbjct:   798 VRSDASREELAELAQQVNPEEIQLGEDEDEDEMD 831


>RGD|1304933 [details] [associations]
            symbol:Pdcd11 "programmed cell death 11" species:10116 "Rattus
            norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
            [GO:0006397 "mRNA processing" evidence=IEA] [GO:0008134
            "transcription factor binding" evidence=IEA;ISO] InterPro:IPR003029
            InterPro:IPR003107 InterPro:IPR008847 InterPro:IPR011990
            InterPro:IPR013026 Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126
            PROSITE:PS50293 SMART:SM00386 RGD:1304933 GO:GO:0005829
            GO:GO:0005634 GO:GO:0006397 GO:GO:0003723 Gene3D:1.25.40.10
            Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
            InterPro:IPR022967 SMART:SM00316 CTD:22984 KO:K14792
            OrthoDB:EOG4XKV63 GeneTree:ENSGT00390000012228 IPI:IPI00870468
            RefSeq:NP_001101074.2 UniGene:Rn.136636 ProteinModelPortal:D3ZNI3
            Ensembl:ENSRNOT00000027512 GeneID:309458 KEGG:rno:309458
            NextBio:660838 ArrayExpress:D3ZNI3 Uniprot:D3ZNI3
        Length = 1876

 Score = 133 (51.9 bits), Expect = 7.0e-05, P = 7.0e-05
 Identities = 39/132 (29%), Positives = 61/132 (46%)

Query:   250 WFDYLRLLEDEGNADLIRETYERAIANIPP-------TKFAELESLLGDMERARAIYELA 302
             W  Y   +     A       +RA+  +P         KFA+LE  LGD+ERA+AI+E  
Sbjct:  1732 WIKYGAFVLGRSQAGASHRVLQRALECLPTKEHVDVIVKFAQLEFQLGDVERAKAIFENT 1791

Query:   303 ISQ-P-RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK----VWMNYAQFEM 356
             ++  P R D    VW  YID  +  G + +VR++ ER++  ++  K     +  Y  +E 
Sbjct:  1792 LTTYPKRTD----VWSVYIDMTIKHGSQKEVRDIFERVIHLSLAPKRMKFFFKRYLDYEK 1847

Query:   357 SSGDEDSVSLAR 368
               G E  V   +
Sbjct:  1848 QHGTEKDVQAVK 1859


>UNIPROTKB|F1PLK8 [details] [associations]
            symbol:PDCD11 "Uncharacterized protein" species:9615 "Canis
            lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
            evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
            InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
            SMART:SM00386 GO:GO:0005634 GO:GO:0006397 GO:GO:0003723
            Gene3D:1.25.40.10 Gene3D:2.40.50.140 InterPro:IPR012340
            SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316 CTD:22984
            KO:K14792 OMA:LHLADIY GeneTree:ENSGT00390000012228
            EMBL:AAEX03015497 EMBL:AAEX03015498 RefSeq:XP_535003.3
            Ensembl:ENSCAFT00000016578 GeneID:477810 KEGG:cfa:477810
            Uniprot:F1PLK8
        Length = 1870

 Score = 142 (55.0 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 47/163 (28%), Positives = 69/163 (42%)

Query:   224 IEDVIVSKRKFQ-----YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
             + D+     KFQ     Y   +         W  Y   L   G A       +RA+  +P
Sbjct:  1696 LADIYNKSEKFQEAGELYNRMLKRFRQEKAVWIKYGAFLLRRGQAGASHRVMQRALECLP 1755

Query:   279 P-------TKFAELESLLGDMERARAIYELAISQ-P-RLDMPELVWKAYIDFEVGQGERD 329
                      KFA+LE  LGD ERA+AI+E  +S  P R D    VW  YID  +  G + 
Sbjct:  1756 NKEHVDVIAKFAQLEFQLGDAERAKAIFENTLSTYPKRTD----VWSVYIDMTIKHGSQK 1811

Query:   330 KVRELHERLLERTVHVK----VWMNYAQFEMSSGDEDSVSLAR 368
             +VR++ ER++  ++  K     +  Y  +E   G E  V   +
Sbjct:  1812 EVRDIFERVIHLSLAPKRMKFFFKRYLDYEKQHGTEKDVQAVK 1854

 Score = 39 (18.8 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
 Identities = 11/40 (27%), Positives = 22/40 (55%)

Query:   194 YA-LDHIPKDRT---AEIYKAYTIHEKKYGDRAGIEDVIV 229
             YA L H+   +    AE YK   IH+ +  D + ++++++
Sbjct:   390 YARLSHLSDSKNIFNAEAYKPGNIHKCRIIDYSQMDEMVL 429


>UNIPROTKB|F1P3T9 [details] [associations]
            symbol:PDCD11 "Uncharacterized protein" species:9031
            "Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
            "mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
            [GO:0005829 "cytosol" evidence=IEA] [GO:0008134 "transcription
            factor binding" evidence=IEA] InterPro:IPR003029 InterPro:IPR003107
            InterPro:IPR008847 InterPro:IPR011990 InterPro:IPR013026
            Pfam:PF00575 Pfam:PF05843 PROSITE:PS50126 PROSITE:PS50293
            SMART:SM00386 GO:GO:0005829 GO:GO:0005634 GO:GO:0006397
            GO:GO:0003723 Gene3D:1.25.40.10 Gene3D:2.40.50.140
            InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR022967 SMART:SM00316
            OMA:LHLADIY GeneTree:ENSGT00390000012228 EMBL:AADN02030831
            IPI:IPI00603042 Ensembl:ENSGALT00000013446 Uniprot:F1P3T9
        Length = 1841

 Score = 137 (53.3 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
 Identities = 40/157 (25%), Positives = 70/157 (44%)

Query:   226 DVIVSKRKFQYEEEVNSNP-----NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP- 279
             D+  S  K++  EE+              W  Y   L  +G  +      ERA+  +P  
Sbjct:  1669 DIYASSEKYKQAEELYHTMLRRFRQEKSVWLKYASFLLKQGQTEATHRLLERALKALPTK 1728

Query:   280 ------TKFAELESLLGDMERARAIYELAI-SQP-RLDMPELVWKAYIDFEVGQGERDKV 331
                   ++FA+LE   GD E A+A++E  + S P R D    +W  Y+D  + QG + ++
Sbjct:  1729 EHVDVISRFAQLEFRFGDPEHAKALFESTLNSYPKRTD----IWSIYMDIMIKQGSQKEI 1784

Query:   332 RELHERLLERTVHVK----VWMNYAQFEMSSGDEDSV 364
             R++ ER++   +  K     +  Y  +E   G  ++V
Sbjct:  1785 RDIFERVIHLNLAPKKMKFFFKRYLDYEKKYGTTETV 1821

 Score = 44 (20.5 bits), Expect = 8.2e-05, Sum P(2) = 8.2e-05
 Identities = 20/73 (27%), Positives = 31/73 (42%)

Query:   114 MRELVFEEQNGFVSGARKVYERAVEF--FGEENLDEKLFIAFAKFEEGQREKYGDRAGIE 171
             ++ + F  Q   +  AR V ERA++   F EE     +++A    E      YG    + 
Sbjct:  1593 LQYMAFHLQATEIEKARAVAERALKTICFREEQEKLNVWVALLNLEN----MYGTEETLM 1648

Query:   172 DVIVSKRKFQYEE 184
              V   +R  QY E
Sbjct:  1649 KVF--ERAVQYNE 1659


>UNIPROTKB|B7ZKM0 [details] [associations]
            symbol:SART3 "Squamous cell carcinoma antigen recognized by
            T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
            binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
            evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006396
            "RNA processing" evidence=IEA] InterPro:IPR000504
            InterPro:IPR003107 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
            SMART:SM00360 SMART:SM00386 GO:GO:0000166 Gene3D:3.30.70.330
            GO:GO:0003676 GO:GO:0005622 GO:GO:0006396 EMBL:AC008119
            InterPro:IPR008669 Pfam:PF05391 UniGene:Hs.584842 HGNC:HGNC:16860
            HOVERGEN:HBG053888 ChiTaRS:SART3 EMBL:AC010206 EMBL:BC143253
            IPI:IPI00719256 SMR:B7ZKM0 STRING:B7ZKM0 Ensembl:ENST00000431469
            UCSC:uc010swx.1 Uniprot:B7ZKM0
        Length = 927

 Score = 88 (36.0 bits), Expect = 0.00029, Sum P(3) = 0.00029
 Identities = 55/195 (28%), Positives = 84/195 (43%)

Query:   120 EEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRK 179
             E ++  V  AR   E+    F  + L   L+   A F E   E++ +    E VI +  K
Sbjct:   233 EFESAIVEAAR--LEKVHSLFRRQ-LAIPLYDMEATFAE--YEEWSEDPIPESVIQNYNK 287

Query:   180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239
                ++ E+ +  Y+ AL      R AE Y+AY   E K GD A I+ +        +E  
Sbjct:   288 -ALQQLEKYKP-YEEALLQAEAPRLAE-YQAYIDFEMKIGDPARIQLI--------FERA 336

Query:   240 VNSNPNNYDAWFDYLRLLEDEGNA-DLIRETYERAIANIPPTKFAELESLLGDMERARAI 298
             +  N    D W  Y + L+ +    DL+   + RAI N P T       LL  MER    
Sbjct:   337 LVENCLVPDLWIRYSQYLDRQLKVKDLVLSVHNRAIRNCPWTVALWSRYLLA-MERHGVD 395

Query:   299 YELAISQPRLDMPEL 313
             +++ IS    ++ EL
Sbjct:   396 HQV-ISDSSKELEEL 409

 Score = 85 (35.0 bits), Expect = 0.00029, Sum P(3) = 0.00029
 Identities = 36/154 (23%), Positives = 68/154 (44%)

Query:   282 FAELES-LLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
             +A +E+ L  +M++AR +++  +++       + W  Y + E   G+    R+   R ++
Sbjct:   442 WARIEARLCNNMQKARELWDSIMTRGNAKYANM-WLEYYNLERAHGDTQHCRKALHRAVQ 500

Query:   341 RTV----HV-KVWMNYAQFEMSSGDED-SVSLARRVFERANQALKASSEKEERVMLLEAW 394
              T     HV +V +   + E S  D D +V        R N+    ++EKE  ++  E  
Sbjct:   501 CTSDYPEHVCEVLLTMERTEGSLEDWDIAVQKTETRLARVNEQRMKAAEKEAALVQQEEE 560

Query:   395 KEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDE 428
             K  + +    E +A    K  R  +KR    +DE
Sbjct:   561 KAEQRKRARAEKKALKKKKKIRGPEKRGADEDDE 594

 Score = 40 (19.1 bits), Expect = 0.00029, Sum P(3) = 0.00029
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query:    17 LREAKERDLEIVPPVEEGWEE 37
             +R A+++  EI P  EE W E
Sbjct:   131 VRMARQKMSEIFPLTEELWLE 151


>UNIPROTKB|F8VVK9 [details] [associations]
            symbol:SART3 "Squamous cell carcinoma antigen recognized by
            T-cells 3" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            InterPro:IPR003107 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
            EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206
            IPI:IPI01022948 ProteinModelPortal:F8VVK9 SMR:F8VVK9
            Ensembl:ENST00000550619 ArrayExpress:F8VVK9 Bgee:F8VVK9
            Uniprot:F8VVK9
        Length = 111

 Score = 95 (38.5 bits), Expect = 0.00054, P = 0.00054
 Identities = 24/95 (25%), Positives = 48/95 (50%)

Query:   310 MPELVWKAYIDFEVGQGE----RDKVRELHERLLERTVHVKVWMNYAQFEMSS-GDEDSV 364
             + E +W  ++  E+   +    R+ V +L E+ ++  +   +W+ Y Q+ +   G +  +
Sbjct:    12 LTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICPNIWLEYGQYSVGGIGQKGGL 71

Query:   365 SLARRVFERANQALKASSEKEERVMLLEAWKEFEA 399
                R VFERA  ++     K   + L EA++EFE+
Sbjct:    72 EKVRSVFERALSSVGLHMTKG--LALWEAYREFES 104


>UNIPROTKB|F8VZM2 [details] [associations]
            symbol:SART3 "Squamous cell carcinoma antigen recognized by
            T-cells 3" species:9606 "Homo sapiens" [GO:0005622 "intracellular"
            evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
            InterPro:IPR003107 SMART:SM00386 GO:GO:0005622 GO:GO:0006396
            EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3 EMBL:AC010206
            IPI:IPI01021874 ProteinModelPortal:F8VZM2 SMR:F8VZM2
            Ensembl:ENST00000550322 ArrayExpress:F8VZM2 Bgee:F8VZM2
            Uniprot:F8VZM2
        Length = 156

 Score = 104 (41.7 bits), Expect = 0.00086, P = 0.00086
 Identities = 35/140 (25%), Positives = 67/140 (47%)

Query:   310 MPELVWKAYIDFEVGQGE----RDKVRELHERLLERTVHVKVWMNYAQFEMSS-GDEDSV 364
             + E +W  ++  E+   +    R+ V +L E+ ++  +   +W+ Y Q+ +   G +  +
Sbjct:    12 LTEELWLEWLHDEISMAQDGLDREHVYDLFEKAVKDYICPNIWLEYGQYSVGGIGQKGGL 71

Query:   365 SLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKT 424
                R VFERA  ++     K   + L EA++EFE+   +     K++S L RR +  +  
Sbjct:    72 EKVRSVFERALSSVGLHMTKG--LALWEAYREFESAIVEAARLEKVHS-LFRR-QLAIPL 127

Query:   425 YNDEGVEEGWEEVFDYIFPE 444
             Y+ E     +EE  +   PE
Sbjct:   128 YDMEATFAEYEEWSEDPIPE 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.134   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      521       414   0.00081  118 3  11 23  0.46    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  56
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  254 KB (2133 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  39.99u 0.07s 40.06t   Elapsed:  00:00:07
  Total cpu time:  40.02u 0.07s 40.09t   Elapsed:  00:00:07
  Start:  Thu Aug 15 17:07:47 2013   End:  Thu Aug 15 17:07:54 2013
the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data


Symbol, full name	Information	P value
BLAST match view associations BLAST with AT5G45990 AT5G45990 AT5G45990	protein from Arabidopsis thaliana	9.4e-86
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Gallus gallus	2.2e-84
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Canis lupus familiaris	3.1e-81
BLAST match view associations BLAST with crn crn crn crooked neck	protein from Drosophila melanogaster	5.3e-71
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Bos taurus	8.7e-67
BLAST match view associations BLAST with Crnkl1 Crnkl1 Crnkl1 Crn, crooked neck-like 1 (Drosophila)	protein from Mus musculus	1.8e-66
BLAST match view associations BLAST with Crnkl1 Crnkl1 Crnkl1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila)	gene from Rattus norvegicus	1.8e-66
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Crooked neck-like protein 1	protein from Homo sapiens	1.9e-66
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Crooked neck-like protein 1	protein from Homo sapiens	2.6e-66
BLAST match view associations BLAST with CRNKL1 CRNKL1 CRNKL1 Uncharacterized protein	protein from Canis lupus familiaris	7.7e-66
BLAST match view associations BLAST with M03F8.3 M03F8.3 M03F8.3	gene from Caenorhabditis elegans	2.9e-64
BLAST match view associations BLAST with crnkl1 crnkl1 crnkl1 crooked neck pre-mRNA splicing factor-like 1 (Drosophila)	gene_product from Danio rerio	2.9e-64
BLAST match view associations BLAST with DDB_G0278819 DDB_G0278819 DDB_G0278819 HAT repeat-containing protein	gene from Dictyostelium discoideum	4.5e-47
BLAST match view associations BLAST with AT3G13210 AT3G13210 AT3G13210	protein from Arabidopsis thaliana	3.9e-46
BLAST match view associations BLAST with AT5G41770 AT5G41770 AT5G41770	protein from Arabidopsis thaliana	5.8e-42
BLAST match view associations BLAST with AT3G51110 AT3G51110 AT3G51110	protein from Arabidopsis thaliana	3.5e-38
BLAST match view associations BLAST with PFD0180c PFD0180c PFD0180c CGI-201 protein, short form	gene from Plasmodium falciparum	7.4e-25
BLAST match view associations BLAST with PFD0180c PFD0180c PFD0180c CGI-201 protein, short form	protein from Plasmodium falciparum 3D7	7.4e-25
BLAST match view associations BLAST with orf19.332 orf19.332 orf19.332	gene_product from Candida albicans	3.6e-22
BLAST match view associations BLAST with AT5G28740 AT5G28740 AT5G28740	protein from Arabidopsis thaliana	7.5e-10
BLAST match view associations BLAST with CLF1 CLF1 CLF1 Member of the NineTeen Complex (NTC)	gene from Saccharomyces cerevisiae	1.2e-09
BLAST match view associations BLAST with CG6197 CG6197 CG6197	protein from Drosophila melanogaster	1.5e-09
BLAST match view associations BLAST with C50F2.3 C50F2.3 C50F2.3	gene from Caenorhabditis elegans	2.4e-08
BLAST match view associations BLAST with C50F2.3 C50F2.3 C50F2.3 Protein C50F2.3	protein from Caenorhabditis elegans	2.4e-08
BLAST match view associations BLAST with xab2 xab2 xab2 XPA binding protein 2	gene_product from Danio rerio	1.8e-07
BLAST match view associations BLAST with LOC100157027 LOC100157027 LOC100157027 Uncharacterized protein	protein from Sus scrofa	7.6e-07
BLAST match view associations BLAST with LOC100157027 LOC100157027 LOC100157027 Uncharacterized protein	protein from Sus scrofa	7.7e-07
BLAST match view associations BLAST with RRP5 RRP5 RRP5 RNA binding protein involved in synthesis of both 18S and 5.8S rRNAs	gene from Saccharomyces cerevisiae	1.5e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Bos taurus	2.3e-06
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Protein RRP5 homolog	protein from Bos taurus	2.7e-06
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Protein RRP5 homolog	protein from Bos taurus	2.7e-06
BLAST match view associations BLAST with Xab2 Xab2 Xab2 XPA binding protein 2	protein from Mus musculus	2.9e-06
BLAST match view associations BLAST with Xab2 Xab2 Xab2 XPA binding protein 2	gene from Rattus norvegicus	2.9e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Canis lupus familiaris	3.4e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Canis lupus familiaris	3.7e-06
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Uncharacterized protein	protein from Sus scrofa	4.8e-06
BLAST match view associations BLAST with let-716 let-716 let-716	gene from Caenorhabditis elegans	6.8e-06
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Uncharacterized protein	protein from Gallus gallus	1.4e-05
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Uncharacterized protein	protein from Canis lupus familiaris	2.0e-05
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Uncharacterized protein	protein from Sus scrofa	2.0e-05
BLAST match view associations BLAST with PRPF39 PRPF39 PRPF39 Pre-mRNA-processing factor 39	protein from Homo sapiens	2.0e-05
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Protein RRP5 homolog	protein from Homo sapiens	2.6e-05
BLAST match view associations BLAST with Prpf39 Prpf39 Prpf39 PRP39 pre-mRNA processing factor 39 homolog (S. cerevisiae)	gene from Rattus norvegicus	3.3e-05
BLAST match view associations BLAST with Pdcd11 Pdcd11 Pdcd11 programmed cell death 11	protein from Mus musculus	5.4e-05
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Pre-mRNA-splicing factor SYF1	protein from Homo sapiens	5.7e-05
BLAST match view associations BLAST with XAB2 XAB2 XAB2 Pre-mRNA-splicing factor SYF1	protein from Homo sapiens	5.7e-05
BLAST match view associations BLAST with Pdcd11 Pdcd11 Pdcd11 programmed cell death 11	gene from Rattus norvegicus	7.0e-05
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Uncharacterized protein	protein from Canis lupus familiaris	7.9e-05
BLAST match view associations BLAST with PDCD11 PDCD11 PDCD11 Uncharacterized protein	protein from Gallus gallus	8.2e-05
BLAST match view associations BLAST with SART3 SART3 SART3 SART3 protein	protein from Homo sapiens	0.00029
BLAST match view associations BLAST with SART3 SART3 SART3 Squamous cell carcinoma antigen recognized by T-cells 3	protein from Homo sapiens	0.00054
BLAST match view associations BLAST with SART3 SART3 SART3 Squamous cell carcinoma antigen recognized by T-cells 3	protein from Homo sapiens	0.00086