RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8681
(521 letters)
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 94.2 bits (233), Expect = 1e-20
Identities = 58/355 (16%), Positives = 124/355 (34%), Gaps = 30/355 (8%)
Query: 63 KKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQ 122
KK +E++ + + KE E + +R+ + + + + + +E+
Sbjct: 184 KKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW-KKYIQWEKS 242
Query: 123 NGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQY 182
N + + + + V F E+ L + + +Y +++
Sbjct: 243 NPLRTEDQTLITKRVMFAYEQCLLV---LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299
Query: 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
+ A IY+ A+ + K +Y AY +E+ + + Y +
Sbjct: 300 LFSDEAANIYERAISTLLKKN-MLLYFAYADYEESRMKYEKVHSI--------YNRLLAI 350
Query: 243 NPNNYD-AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELES------LLGDMERA 295
+ + Y++ R +++A + + + D A
Sbjct: 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVA 410
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER-----TVHVKVWMN 350
I+EL + + D+PE AYID+ E + R L ER+L ++W
Sbjct: 411 FKIFELGLKKY-GDIPEY-VLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWAR 468
Query: 351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
+ FE + GD S +V +R A + E +E +L++ +K +
Sbjct: 469 FLAFESNIGDLAS---ILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYPCSAS 520
Score = 86.5 bits (213), Expect = 4e-18
Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 39/305 (12%)
Query: 129 ARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-------DVIVSKRKFQ 181
R+VY+R E+L+ + K+EEG + + V+K
Sbjct: 149 VRRVYQRGCVNPMINI--EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYET 206
Query: 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVN 241
+ + + + +++K Y EK R + +I + F YE+ +
Sbjct: 207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLL 266
Query: 242 SNPNNYDAWFDYLRLLEDEGN--------------ADLIRETYERAIANIPPT------K 281
++ D W++ + LE +D YERAI+ +
Sbjct: 267 VLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFA 326
Query: 282 FAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER 341
+A+ E E+ +IY ++ +D P LV+ Y+ F R + ++ E
Sbjct: 327 YADYEESRMKYEKVHSIYNRLLAIEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKARED 385
Query: 342 T-VHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQ 400
V++ A E + S+A ++FE + E + A+ ++ +
Sbjct: 386 ARTRHHVYVTAALMEYYCSKD--KSVAFKIFELGLKKYGDIPE------YVLAYIDYLSH 437
Query: 401 HGDDE 405
+D
Sbjct: 438 LNEDN 442
Score = 68.0 bits (165), Expect = 3e-12
Identities = 41/262 (15%), Positives = 100/262 (38%), Gaps = 34/262 (12%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLLG 290
E+++ NP + DAW +R + D R+TYER +A P + + E E
Sbjct: 2 AEKKLEENPYDLDAWSILIREAQ-NQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60
Query: 291 DMERARAIYELAISQ-PRLDMPELVWKAYIDF-----EVGQGERDKVRELHERLLERT-- 342
+ ++ +++ + + +D +WK Y+ + ++K+ + ++ L++
Sbjct: 61 NYDKVEKLFQRCLMKVLHID----LWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGM 116
Query: 343 --VHVKVWMNYAQFEMSSGDEDS------VSLARRVFERANQALKASSEKEERVMLLEAW 394
+ ++W++Y F S ++ RRV++R + E+ L +
Sbjct: 117 EIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ-----LWRDY 171
Query: 395 KEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKL 454
++E ++ + + R E V +G + + P++ +
Sbjct: 172 NKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD 231
Query: 455 LEKAKAWKKAMEEKQGNKIGEE 476
+ K E+ + ++
Sbjct: 232 MWKKYI---QWEKSNPLRTEDQ 250
Score = 45.2 bits (106), Expect = 3e-05
Identities = 43/326 (13%), Positives = 97/326 (29%), Gaps = 52/326 (15%)
Query: 116 ELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIV 175
L+ E QN + ARK YER V F + + + + E
Sbjct: 18 ILIREAQNQPIDKARKTYERLVAQF---PSSGRFWKLYIEAE------------------ 56
Query: 176 SKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQ 235
+ + +++ +++ L + +++K Y + ++ + +++
Sbjct: 57 ----IKAKNYDKVEKLFQRCLMKVLH---IDLWKCYLSYVRETKGKLPSYKEKMAQAYDF 109
Query: 236 YEEEVNSNPNNYDAWFDYLRLLE---------DEGNADLIRETYERAIANIPPT------ 280
+++ +Y W DY+ L+ + +R Y+R N
Sbjct: 110 ALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR 169
Query: 281 KFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
+ + E + + I + + M + + +R+ + +
Sbjct: 170 DYNKYEEGINIHLAKKMIEDRSRD----YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQ 225
Query: 341 RTVHVKVWMNYAQFEMSSGDEDS-----VSLARRVFERANQALKASSEKEERVMLLEAWK 395
V +W Y Q+E S+ +E+ L +
Sbjct: 226 EAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQS 285
Query: 396 EFEAQHGDDESRAKLNSKLPRRAKKR 421
D + AKL S +R
Sbjct: 286 SKLLAEKGDMNNAKLFSDEAANIYER 311
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 84.7 bits (209), Expect = 3e-18
Identities = 50/294 (17%), Positives = 101/294 (34%), Gaps = 37/294 (12%)
Query: 117 LVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVS 176
L E+Q YE+ + G ++ A++ E + ++ +
Sbjct: 23 LRTEDQTLITKRVMFAYEQCLLVLG---HHPDIWYEAAQYLEQSSKLLAEKGDMN----- 74
Query: 177 KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ A IY+ A+ + K +Y AY +E+ + + Y
Sbjct: 75 ---NAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSI--------Y 122
Query: 237 EEEVNSNPNNYD-AWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLL------ 289
+ + + Y++ R +++A + + + L
Sbjct: 123 NRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCS 182
Query: 290 GDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV-----H 344
D A I+EL + + AYID+ E + R L ER+L
Sbjct: 183 KDKSVAFKIFELGLKKYGDI--PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKS 240
Query: 345 VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFE 398
++W + FE + GD S+ +V +R A + E +E +L++ +K +
Sbjct: 241 GEIWARFLAFESNIGDLASI---LKVEKRRFTAFREEYEGKETALLVDRYKFMD 291
Score = 78.6 bits (193), Expect = 3e-16
Identities = 51/289 (17%), Positives = 96/289 (33%), Gaps = 63/289 (21%)
Query: 205 AEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEG--- 261
+++K Y EK R + +I + F YE+ + ++ D W++ + LE
Sbjct: 8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLL 67
Query: 262 -----------NADLIRETYERAIANIPPT------KFAELESLLGDMERARAIYELAIS 304
+D YERAI+ + +A+ E E+ +IY ++
Sbjct: 68 AEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA 127
Query: 305 QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYAQFEMSSGDEDS 363
+D P LV+ Y+ F R + ++ E V++ A E +
Sbjct: 128 IEDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD-- 184
Query: 364 VSLARRVFERANQAL--------------------------------KASSEKEERVMLL 391
S+A ++FE + S E+ +
Sbjct: 185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW 244
Query: 392 EAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEEVFDY 440
+ FE+ GD S K+ K+R + +E + + D
Sbjct: 245 ARFLAFESNIGDLASILKV-------EKRRFTAFREEYEGKETALLVDR 286
Score = 47.0 bits (111), Expect = 7e-06
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 30/145 (20%)
Query: 121 EQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKF 180
+ S A K++E ++ +G+ + +A+ + E
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGD---IPEYVLAYIDYLSHLNE------------------ 218
Query: 181 QYEEHERARVIYKYALDH--IPKDRTAEIYKAYTIHEKKYGDRAGIEDV---IVSKRKFQ 235
RV+++ L +P +++ EI+ + E GD A I V + + +
Sbjct: 219 ----DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDE 260
YE + + + + D E
Sbjct: 275 YEGKETALLVDRYKFMDLYPCSASE 299
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 84.5 bits (208), Expect = 1e-17
Identities = 40/295 (13%), Positives = 95/295 (32%), Gaps = 29/295 (9%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
E++ + R Y RA++ +L+ F FE + G + +
Sbjct: 98 IEDEQTRIEKIRNGYMRALQTPMGS--LSELWKDFENFELELNKITGKKIVGD------- 148
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
+ + Y+ + + + + + E + G + G S+ F +
Sbjct: 149 --TLPIFQSSFQRYQQ-IQPLIRGWSVKNAARLIDLEMENGMKLG-GRPHESRMHFIHNY 204
Query: 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP----TKFAELESLLGDMER 294
++S + +F Y L G + ++ ER I + +
Sbjct: 205 ILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDEEAVYGD 264
Query: 295 ARAIYELAIS----QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMN 350
+ Y + + + +L+ ++++ + + + R+L L V V++
Sbjct: 265 LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPHVFIY 324
Query: 351 YAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDE 405
A E + + +F + +L E + F + GD+E
Sbjct: 325 CAFIEYYATGSRAT--PYNIFSSGLLKHP------DSTLLKEEFFLFLLRIGDEE 371
Score = 46.4 bits (109), Expect = 2e-05
Identities = 21/171 (12%), Positives = 55/171 (32%), Gaps = 12/171 (7%)
Query: 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKF-----AELESL 288
EE++ ++ A ++ R L + + + R + + +
Sbjct: 1 MDAEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKV 60
Query: 289 LGDMERARAIYELAISQPRLDMPE-LVWKAYIDF----EVGQGERDKVRELHERLLERTV 343
+ +YE + Q ++K YI+ E Q +K+R + R L+ +
Sbjct: 61 SQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPM 120
Query: 344 H--VKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLE 392
++W ++ FE+ + + + + + +
Sbjct: 121 GSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171
Score = 29.8 bits (66), Expect = 2.4
Identities = 24/198 (12%), Positives = 55/198 (27%), Gaps = 29/198 (14%)
Query: 79 ANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVE 138
E K + E E ++ + L + + + RK++
Sbjct: 255 VMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELG- 313
Query: 139 FFGEENLDEKLFIAFAKFE--------------EGQREKYGDRAGIEDVIVSKRKF--QY 182
E + +FI A E K+ D + F +
Sbjct: 314 ---NEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDST---LLKEEFFLFLLRI 367
Query: 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
+ E AR ++K ++T+ ++ + +E G +++ K + +
Sbjct: 368 GDEENARALFKRL------EKTSRMWDSMIEYEFMVGSMELFRELVDQKMDAIKADAILP 421
Query: 243 NPNNYDAWFDYLRLLEDE 260
+ +L
Sbjct: 422 PLPPREHNVQMEGILGRY 439
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 71.6 bits (174), Expect = 2e-13
Identities = 41/390 (10%), Positives = 108/390 (27%), Gaps = 45/390 (11%)
Query: 62 WKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELV--- 118
++ + E + ++ + +R+ + E + Y +++L+
Sbjct: 247 ARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWL 306
Query: 119 ----FEEQNG-------FVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDR 167
+E N + VY +A + +++ A ++ +
Sbjct: 307 EWIRWESDNKLELSDDLHKARMTYVYMQAAQHVC---FAPEIWFNMANYQGEKNTDSTVI 363
Query: 168 AGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
+ + + + + +I + T
Sbjct: 364 TKYLKLGQQCIPNSAVLA------FSLSEQY---ELNTKIPEIETTILSCIDRIHLDLAA 414
Query: 228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK------ 281
++ + Y+ ++ R+ + +
Sbjct: 415 LMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLE 474
Query: 282 FAELE-SLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
A +E + D + A + EL + D Y+DF + E +V+ L E ++
Sbjct: 475 NAYIEYHISKDTKTACKVLELGLKYFATDGE--YINKYLDFLIYVNEESQVKSLFESSID 532
Query: 341 RTVHVK----VWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEE---RVMLLEA 393
+ ++ FE G +SV R + +R + ++ EE + +L+
Sbjct: 533 KISDSHLLKMIFQKVIFFESKVGSLNSV---RTLEKRFFEKFPEVNKLEEFTNKYKVLDV 589
Query: 394 WKEFEAQHGDDESRAKLNSKLPRRAKKRVK 423
+ + R +K
Sbjct: 590 NYLQRLELDYMVRDVMPEAIALDRGSNNLK 619
Score = 65.8 bits (159), Expect = 2e-11
Identities = 47/418 (11%), Positives = 118/418 (28%), Gaps = 26/418 (6%)
Query: 10 QITAEQLLREAKERDLEIVPPVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEK 69
Q+TA + + E + + W + + K + +++
Sbjct: 244 QLTARRHIGE-LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQL 302
Query: 70 QGNK--IGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVS 127
I E NK ++ K R + + + + E+N +
Sbjct: 303 LIWLEWIRWESDNKLELSDDLHKARMTYVY-MQAAQHVCFAPEIWFNMANYQGEKNTDST 361
Query: 128 GARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHER 187
K + + L + ++ E K + + +
Sbjct: 362 VITKYLKLGQQCIPN---SAVLAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALME 417
Query: 188 ARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNY 247
+ A++ + + +Y Y K+ + + RK +
Sbjct: 418 DDPTNESAINQLKS-KLTYVYCVYMNTMKRIQG-------LAASRKIFGKCRRLKKLVTP 469
Query: 248 DAWFDYLRL-LEDEGNADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYEL 301
D + + + + + E + K+ + + + + ++++E
Sbjct: 470 DIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFES 529
Query: 302 AISQ-PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGD 360
+I + + +++++ I FE G + VR L +R E+ +F
Sbjct: 530 SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKYKV 586
Query: 361 EDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA 418
D L R + + + + +R E + G + K N
Sbjct: 587 LDVNYLQRLELDYMVRDVMPEAIALDRGSNNLKRTMREEEDGQAFKKFKANEDPIPPE 644
Score = 53.5 bits (127), Expect = 1e-07
Identities = 32/272 (11%), Positives = 84/272 (30%), Gaps = 35/272 (12%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
+ + + P + + L+ + ET+++ P LE
Sbjct: 54 KLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDK 113
Query: 290 ---GDMERARAIYELAISQPRLDMPELVWKAYIDF--------EVGQGERDKVRELHERL 338
D + +S+ + +W +YI + G+ R+ V + + +
Sbjct: 114 MEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVV 173
Query: 339 LERTV-----HVKVWMNYAQFEMSSGDEDS------VSLARRVFERANQALKASSEKEER 387
+++ ++ W Y F + V R++++ E
Sbjct: 174 VDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLES--- 230
Query: 388 VMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEEGWEE---VFDYIFPE 444
+ + + ++E +R + + R + + +G + + E
Sbjct: 231 --MWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATE 288
Query: 445 DEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEE 476
KPN +++ W + + + NK+
Sbjct: 289 SNLPKPNEYDVQQLLIWLEWIRWESDNKLELS 320
Score = 43.5 bits (101), Expect = 1e-04
Identities = 39/375 (10%), Positives = 99/375 (26%), Gaps = 92/375 (24%)
Query: 75 GEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRE----LVFEEQNGFVSGAR 130
G++ R R R+E D D + + L
Sbjct: 27 GQQMGRGSMSTSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVY 86
Query: 131 KVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARV 190
+ +++ + F L ++ E + E+ +
Sbjct: 87 ETFDKLHDRF---PLMANIWCMRLSLEFDKMEE-------------------LDAAVIEP 124
Query: 191 IYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS----NPNN 246
+ L + ++ +Y + +K D + + ++ V+ P +
Sbjct: 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKS 184
Query: 247 YDAWFDYLRLL---------EDEGNADLIRETYERAIANIPP------------------ 279
W +YL L E++ IR+ Y+ +
Sbjct: 185 IQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ 244
Query: 280 ------------------TKFAELESLLGDMERARAIYELAISQPRLDMPEL-------V 314
+ + + ++ ++R I ++ L P +
Sbjct: 245 LTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI 304
Query: 315 WKAYIDFEVGQGERDK-------VRELHERLLERTVHV-KVWMNYAQFEMSSGDEDSVSL 366
W +I +E + ++ + + ++W N A ++ + +V
Sbjct: 305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV-- 362
Query: 367 ARRVFERANQALKAS 381
+ + Q + S
Sbjct: 363 ITKYLKLGQQCIPNS 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 5e-08
Identities = 74/611 (12%), Positives = 177/611 (28%), Gaps = 205/611 (33%)
Query: 7 AEIQITAEQLL---REAKERDLEIVPPVEEGWEEVF-----DYIFPEDEAAKPNLKLL-- 56
E Q + +L +A + + V++ + + D+I +A L+L
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 57 ---EKAKAWKKAMEEK-QGN------KIGEEGANKENEEEERDKERDREEED-------- 98
++ + +K +EE + N I E ++RDR D
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 99 -ERKDE---------GDRDSD--TTYGM-------------RELVFEEQNGFVSGARKVY 133
R R + G+ + + F K+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF-----KI- 184
Query: 134 ERAVEF---FGEENLDEKLFIAFAK--------FEEGQREKYGDRAGIEDVIVSKRK-FQ 181
F N E + K + + I + R+ +
Sbjct: 185 -----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 182 YEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEK-----KYGDRAGIEDVIVSKRKFQY 236
+ +E ++ L ++ + A+ + A+ + K ++ + D + +
Sbjct: 240 SKPYENCLLV----LLNV---QNAKAWNAFNLSCKILLTTRF---KQVTDFLSAATTTHI 289
Query: 237 ------------------------------EEEVNSNP-----------NNYDAWFDYLR 255
E + +NP + W D +
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DNWK 348
Query: 256 LLEDEG------------NADLIRETYER-AI----ANIPPT---------KFAELESLL 289
+ + R+ ++R ++ A+IP +++ ++
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 290 GDMERARAIYELAISQP---RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK 346
+ + Y L QP + +P + Y++ + + + LH +++ K
Sbjct: 409 NKLHK----YSLVEKQPKESTISIPSI----YLEL---KVKLENEYALHRSIVDHYNIPK 457
Query: 347 V--------------WMNYAQFEMSSGD-EDSVSLARRVF----------ERANQALKAS 381
+ ++ + + + + ++L R VF + A AS
Sbjct: 458 TFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 382 SEKEERVMLLEAWKEFEAQHGDDESRAKLNSK---LPRRAKKRVKTYNDEGVEEGWEEVF 438
+ L+ +K + + D + +N+ LP+ + + + + +
Sbjct: 518 GSILNTLQQLKFYKPYICDN-DPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED 576
Query: 439 DYIFPEDEAAK 449
+ IF +EA K
Sbjct: 577 EAIF--EEAHK 585
Score = 41.8 bits (97), Expect = 6e-04
Identities = 42/315 (13%), Positives = 86/315 (27%), Gaps = 96/315 (30%)
Query: 10 QITAEQLLREAKERDLEIVPPVEEGWEEVFDY--IFPEDEAAKPNLKLLEKAKAWKKAME 67
+ ++L E L ++ P E ++FD +FP A LL W
Sbjct: 349 HVNCDKL-TTIIESSLNVLEPAEY--RKMFDRLSVFPPS--AHIPTILLS--LIW----- 396
Query: 68 EKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDS-DTTYGMRELVFEEQNGFV 126
+ + + + ++ ++T + + E +
Sbjct: 397 -----------FDVIKSDVMVV-----VNKLHKYSLVEKQPKESTISIPSIYLELK---- 436
Query: 127 SGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIE-DVIVSKRKFQYEEH 185
K+ L + + Y + D ++ QY
Sbjct: 437 ---VKLENEY-------ALHRSI-----------VDHYNIPKTFDSDDLIPPYLDQY--- 472
Query: 186 ERARVIYKYALDHIPKDRTAE-------IYKAYTIHEKK-------YGDRAGIEDVIVSK 231
Y + H+ E ++ + E+K + I + +
Sbjct: 473 -----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 232 RKFQYEEEVNSNPNNYDAWF-DYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLG 290
+ Y+ + N Y+ L L +LI +K+ +L +
Sbjct: 528 KF--YKPYICDNDPKYERLVNAILDFLPKIE-ENLIC------------SKYTDLLR-IA 571
Query: 291 DMERARAIYELAISQ 305
M AI+E A Q
Sbjct: 572 LMAEDEAIFEEAHKQ 586
Score = 36.0 bits (82), Expect = 0.035
Identities = 56/456 (12%), Positives = 116/456 (25%), Gaps = 156/456 (34%)
Query: 107 DSDTT---YGMRELVFEEQNGFVSG--ARKV--YERAV-------EFFGEENLDEKLFIA 152
D +T Y ++++ ++ FV + V +++ ++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 153 FAKFEEGQREKYGDRAGIEDVIVSKRKF-----QYEEHERARVIYKYALDHIPKDRTAEI 207
F Q E + +E+V+ KF + E+ + + + Y ++
Sbjct: 68 FWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 208 YKAYTIH-EKKYGDRAGIEDVIVSKRKFQY--------------------EEEVNSNPNN 246
+ Y + + Y + ++ R + +V +
Sbjct: 126 FAKYNVSRLQPYLK---LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182
Query: 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAISQP 306
W + N + E L+ LL ++ S
Sbjct: 183 KIFWLNL-------KNCNSPETVLEM------------LQKLLYQIDPNWTSRSDHSSNI 223
Query: 307 RLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTVHVK-------VW----MNYAQFE 355
+L + + + ++R RLL+ + V N F
Sbjct: 224 KLRIHSI--------------QAELR----RLLKSKPYENCLLVLLNVQNAKAWNA--FN 263
Query: 356 MS---------SGDEDSVSLARRVFERANQALKASSEKEERVMLLEAWKEFEAQHGDDES 406
+S D +S A + + +E LL + + Q
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQ------ 316
Query: 407 RAKLNSKLPRRAKK---------------------RVKTYNDEGVEEGWE---------- 435
LPR K N + + E
Sbjct: 317 ------DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 436 --EVFDY--IFPEDEAAKPNLKLLEKAKAWKKAMEE 467
++FD +FP A LL W ++
Sbjct: 371 YRKMFDRLSVFPPS--AHIPTILLS--LIWFDVIKS 402
Score = 28.3 bits (62), Expect = 9.4
Identities = 35/185 (18%), Positives = 66/185 (35%), Gaps = 49/185 (26%)
Query: 318 YIDFEVGQGE---RDKVRELHERLLE----RTV--HVKVWMNYAQFEMSSGDEDSVSLAR 368
++DFE G+ + +D + + ++ + V K ++ + + +D+VS
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 369 RVF-------ERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRA--K 419
R+F E Q + L+ K E R + R +
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT--------EQRQP---SMMTRMYIE 114
Query: 420 KRVKTYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKI----GE 475
+R + YND +VF AK N+ L+ ++A+ E + K G
Sbjct: 115 QRDRLYND-------NQVF---------AKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 476 EGANK 480
G+ K
Sbjct: 159 LGSGK 163
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 9e-06
Identities = 58/345 (16%), Positives = 101/345 (29%), Gaps = 144/345 (41%)
Query: 113 GM-REL--VFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAG 169
GM +L + A+ V+ RA D ++ YG
Sbjct: 1630 GMGMDLYKTSKA-------AQDVWNRA---------DNHF-----------KDTYGFS-- 1660
Query: 170 IEDVIVS--KRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
I D++++ + E+ + I E Y A G
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIR-------------ENYSAMIFETIVDGK------- 1700
Query: 228 IVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETY---------ERAI---- 274
+ +++ F +E+N + +Y F L+ T E+A
Sbjct: 1701 LKTEKIF---KEINEHSTSYT--F--------RSEKGLLSATQFTQPALTLMEKAAFEDL 1747
Query: 275 ---ANIPPTK-FA-----E------------LESLLGDM--ERARAIYELAISQPR---- 307
IP FA E +ESL+ ++ R + PR
Sbjct: 1748 KSKGLIPADATFAGHSLGEYAALASLADVMSIESLV-EVVFYRGMTMQVAV---PRDELG 1803
Query: 308 ---LDM----PELVWKAYIDFEVGQGERDKVRELHERLLERT---VHVKVWMNY----AQ 353
M P V ++ ++ + ER+ +RT V + V NY Q
Sbjct: 1804 RSNYGMIAINPGRV--------AASFSQEALQYVVERVGKRTGWLVEI-V--NYNVENQQ 1852
Query: 354 FEMSSGDEDSVSLARRVFERAN------QALKASSEKEE-RVMLL 391
+ +++GD ++ V L+ S EE L
Sbjct: 1853 Y-VAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHLF 1896
Score = 46.2 bits (109), Expect = 3e-05
Identities = 82/451 (18%), Positives = 126/451 (27%), Gaps = 164/451 (36%)
Query: 88 RDK-ERDREEEDERKDEGDRDSDTTYGMRELV--FEEQNGFVSGARKVYERAVEFFGEEN 144
+++ + E E D + ELV F G+VS VE
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPA----ELVGKFL---GYVS-------SLVEPSKVGQ 79
Query: 145 LDEKLFIAFAKFEEGQREKY--GDRAGIEDVIVSKRKFQYEEHERARVIYKYALDHIPKD 202
D+ L + +FE Y G+ D+ H A + +
Sbjct: 80 FDQVLNLCLTEFEN----CYLEGN-----DI-----------HALAAKLL--QENDTTLV 117
Query: 203 RTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE------VNSNPN----------N 246
+T E+ K Y A I++KR F + V N
Sbjct: 118 KTKELIKNY------I--TA----RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGN 165
Query: 247 YDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYE------ 300
D +F+ LR L +TY + ++ L L+ A ++
Sbjct: 166 TDDYFEELRDL---------YQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNIL 216
Query: 301 --------------LA---ISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERTV 343
L IS P + + +L Y+ G EL L T
Sbjct: 217 EWLENPSNTPDKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFT--PGELRSYLKGATG 272
Query: 344 HVK-VWMNYAQFEMSSGDEDS-VSLARRVFE-------RANQA----------LKASSEK 384
H + + A + +S R+ R +A L+ S E
Sbjct: 273 HSQGLVT--AVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLEN 330
Query: 385 EERV---ML---------LEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYN--DEGV 430
E V ML ++ + K NS LP + + N V
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVN------------KTNSHLPAGKQVEISLVNGAKNLV 378
Query: 431 EEGWEEVFDYIFPEDEAAKPNLKL-LEKAKA 460
G P+ L L L KAKA
Sbjct: 379 VSG--------PPQSLYG---LNLTLRKAKA 398
Score = 42.3 bits (99), Expect = 4e-04
Identities = 73/509 (14%), Positives = 134/509 (26%), Gaps = 214/509 (42%)
Query: 6 PAEIQITAEQLLREAKERDLEIVPPVEEGWEEVFDYIFPEDEAAKPNLKLLEK-----AK 60
P A QL +E+ +I+P EG+ +DE P +L+ K +
Sbjct: 23 PTASFFIASQL----QEQFNKILPEPTEGFAA-------DDEPTTP-AELVGKFLGYVS- 69
Query: 61 AWKKAMEEKQGNKIGEEGANKENEEEERDKERDREE-------EDER-----KD------ 102
E K ++ E E D
Sbjct: 70 -----------------------SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAA 106
Query: 103 EGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFG---EENLDEKLFIA------- 152
+ +++DTT + + K Y A ++ + LF A
Sbjct: 107 KLLQENDTTLVKTKELI-----------KNYITARIMAKRPFDKKSNSALFRAVGEGNAQ 155
Query: 153 -FAKFEEGQREKYGDRAGIEDVIVSKRKFQY-EEHERARVIYKYALDHIPKDRTAEIYKA 210
A F GQ G+ +D Y EE L ++Y+
Sbjct: 156 LVAIFG-GQ----GN---TDD---------YFEE-----------L--------RDLYQT 179
Query: 211 YTIHEKKYGDRAGIEDVI--VSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNA-D--- 264
Y + D+I ++ + + + L LE+ N D
Sbjct: 180 Y---------HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY 230
Query: 265 ---------LIRET----YERA--IANIPPTKFAE-LESLLGDMER---ARAI------- 298
LI Y + P + L+ G + A AI
Sbjct: 231 LLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 299 --YELAI------------SQ---PRLDMPELVWKAYIDFEVGQGE-------RDKVREL 334
+ P +P + + + E +G + +E
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSL--ENNEGVPSPMLSISNLTQEQ 348
Query: 335 HERLLERTVHVKVWMNYAQFEMSSGDEDSVSL--ARRVF-----ERANQALKASSEKEER 387
+ + +T N + +G + +SL + ++ L + K +
Sbjct: 349 VQDYVNKT-------NS---HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK- 397
Query: 388 VMLLEAWKEFEAQHGDDESRAKLNSKLPR 416
A G D+SR + + +
Sbjct: 398 -----------APSGLDQSRIPFSERKLK 415
Score = 39.3 bits (91), Expect = 0.004
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 33/149 (22%)
Query: 352 AQFE-MSSGDE--DSVSLARRVFERANQALKAS---SEKEERVMLLEAWKEFEAQHGDDE 405
+Q + M G + + A+ V+ RA+ K + S + +++ G ++
Sbjct: 1626 SQEQGM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILD---IVINNPVNLTIHFGGEK 1680
Query: 406 SRA-KLN-SKLPRRAKKRVKTYNDEGVEEGWEEVFDYIF--PED-----EAAKPNLKLLE 456
+ + N S + K ++ +E E Y F + + +P L L+E
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 457 KAKAWKKAMEEKQGNK----------IGE 475
KA A+ + ++ K G +GE
Sbjct: 1741 KA-AF-EDLKSK-GLIPADATFAGHSLGE 1766
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.7 bits (84), Expect = 0.007
Identities = 13/61 (21%), Positives = 28/61 (45%)
Query: 446 EAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDEKKDERDR 505
E + L+ L+ A + ++ K EE +++E+ E++K +R + + D
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDA 151
Query: 506 D 506
D
Sbjct: 152 D 152
Score = 35.1 bits (80), Expect = 0.029
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 14/74 (18%)
Query: 456 EKAKAWKKAMEEKQGNKIGEEGANKENEEEE------RDKE---RDREEEDEKKDERDRD 506
E + W+ E+Q ++ E A + E+E +D E + + E+ EK +R
Sbjct: 85 ESIRKWR----EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRI 140
Query: 507 SDDE-RDDREEDSI 519
+D + D I
Sbjct: 141 ADKAFYQQPDADII 154
Score = 34.4 bits (78), Expect = 0.044
Identities = 13/64 (20%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 47 EAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDR 106
E + L+ L+ A + ++ K EE +++E+ E++K +R + +
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ--P 149
Query: 107 DSDT 110
D+D
Sbjct: 150 DADI 153
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio
parahaemolyticus RIMD 22 structural genomics, PSI-2,
protein structure initiative; HET: MES; 2.14A {Vibrio
parahaemolyticus}
Length = 176
Score = 36.1 bits (83), Expect = 0.012
Identities = 14/105 (13%), Positives = 30/105 (28%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295
+ + + D L + +L +E + L + L ++A
Sbjct: 29 IQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQA 88
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
EL + L ++ + V + + E E L
Sbjct: 89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWN 133
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral
twinning, leucine-rich repeat protein, LRR, merohedral
twinning; 2.2A {Schizosaccharomyces pombe} SCOP:
c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Length = 386
Score = 36.2 bits (84), Expect = 0.020
Identities = 10/67 (14%), Positives = 27/67 (40%), Gaps = 16/67 (23%)
Query: 469 QGNKIGEEGAN----------------KENEEEERDKERDREEEDEKKDERDRDSDDERD 512
GN+ EE E ++ E + + E+E+E+ + + + + +
Sbjct: 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEE 370
Query: 513 DREEDSI 519
++E+ +
Sbjct: 371 EKEDKEL 377
Score = 29.7 bits (67), Expect = 2.8
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 11/51 (21%)
Query: 70 QGNKIGEEGA-----------NKENEEEERDKERDREEEDERKDEGDRDSD 109
GN+ EE E +E D + +E+E +E + +S
Sbjct: 311 NGNRFSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQ 361
Score = 27.8 bits (62), Expect = 9.9
Identities = 11/62 (17%), Positives = 23/62 (37%)
Query: 441 IFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDEKK 500
ED+ ++ + + EE ++E E E + E + EE+++
Sbjct: 315 FSEEDDVVDEIREVFSTRGRGELDELDDMEELTDEEEEDEEEEAESQSPEPETSEEEKED 374
Query: 501 DE 502
E
Sbjct: 375 KE 376
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase
110 kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 35.6 bits (81), Expect = 0.049
Identities = 33/190 (17%), Positives = 59/190 (31%), Gaps = 19/190 (10%)
Query: 241 NSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLG-------DME 293
S P + D+ + + ++GN + Y +A+ P +FA S L ++
Sbjct: 3 GSCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQ 60
Query: 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLERT-VHVKVWMNYA 352
A Y+ AI E + + + R ++ N A
Sbjct: 61 EALMHYKEAIRISPTFADAYSNMGNTLKE--MQDVQGALQCYTRAIQINPAFADAHSNLA 118
Query: 353 QFEMSSGDEDSVSLARRVFERANQALKASSEKEE-RVMLLEAWKEFEAQHGDDESRAKLN 411
SG+ A + ALK + + L + DE KL
Sbjct: 119 SIHKDSGNIP---EAIASYRT---ALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLV 172
Query: 412 SKLPRRAKKR 421
S + + +K
Sbjct: 173 SIVADQLEKN 182
Score = 34.0 bits (77), Expect = 0.14
Identities = 29/127 (22%), Positives = 51/127 (40%), Gaps = 19/127 (14%)
Query: 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244
E A +Y+ AL+ P+ A A + ++ A ++ Y+E + +P
Sbjct: 25 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEA-----LMH-----YKEAIRISP 74
Query: 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLL-------GDMERARA 297
DA+ + L++ + + Y RAI P FA+ S L G++ A A
Sbjct: 75 TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP--AFADAHSNLASIHKDSGNIPEAIA 132
Query: 298 IYELAIS 304
Y A+
Sbjct: 133 SYRTALK 139
Score = 30.5 bits (68), Expect = 1.4
Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 10/94 (10%)
Query: 185 HERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNP 244
+ A Y A+ P A A + A Y + P
Sbjct: 93 VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA----------IASYRTALKLKP 142
Query: 245 NNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
+ DA+ + L+ + E ++ ++ +
Sbjct: 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 35.3 bits (81), Expect = 0.052
Identities = 22/135 (16%), Positives = 48/135 (35%), Gaps = 16/135 (11%)
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
K ++ERA+V ++ AL+ PK+ E I + + ++ I +
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKN--PEFTSGLAIASYRLDNWPPSQNAIDP-----LRQ 200
Query: 239 EVNSNPNNYDAWFD----YLRLLEDEGNADLIRETYERAIANIPPT-----KFAELESLL 289
+ NP+N ++ E+ + E A+ P A+
Sbjct: 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRK 260
Query: 290 GDMERARAIYELAIS 304
+ ++A + + A+
Sbjct: 261 DEPDKAIELLKKALE 275
Score = 33.4 bits (76), Expect = 0.16
Identities = 23/145 (15%), Positives = 49/145 (33%), Gaps = 8/145 (5%)
Query: 174 IVSKRKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRK 233
I S R + + A + A+ P ++ ++ A +H+ + E +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL---- 235
Query: 234 FQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDME 293
EE + P D + + D E ++A+ IP A L +G
Sbjct: 236 --VEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIP--NNAYLHCQIGCCY 291
Query: 294 RARAIYELAISQPRLDMPELVWKAY 318
RA+ + + + + + +
Sbjct: 292 RAKVFQVMNLRENGMYGKRKLLELI 316
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 33.0 bits (76), Expect = 0.15
Identities = 10/67 (14%), Positives = 17/67 (25%), Gaps = 5/67 (7%)
Query: 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA-----ELESLLGDMERARA 297
N N + LL E R+ Y+ + L + D + A +
Sbjct: 171 NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAAS 230
Query: 298 IYELAIS 304
Sbjct: 231 YGLQLKR 237
Score = 31.9 bits (73), Expect = 0.44
Identities = 10/76 (13%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-LESL------ 288
Y + + S+ N +Y L ++ + + A + + + E+L
Sbjct: 94 YRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ 153
Query: 289 LGDMERARAIYELAIS 304
+ +A+ +E ++
Sbjct: 154 MKKPAQAKEYFEKSLR 169
>2kat_A Uncharacterized protein; NESG, structure, structural genomics,
PSI-2, protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 31.5 bits (72), Expect = 0.20
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 5/75 (6%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA-----ELESLL 289
+ E + +N F + + D A+ P A +
Sbjct: 7 RLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ 66
Query: 290 GDMERARAIYELAIS 304
GD AR +E ++
Sbjct: 67 GDRAGARQAWESGLA 81
Score = 27.7 bits (62), Expect = 3.7
Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA----NIPPTKFAELESLLG 290
++ +P AW + L+ +G+ R+ +E +A EL+ L
Sbjct: 41 HLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLR 100
Query: 291 DMERARAI 298
+ R A+
Sbjct: 101 RLAREDAL 108
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 33.3 bits (76), Expect = 0.20
Identities = 18/136 (13%), Positives = 34/136 (25%), Gaps = 14/136 (10%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLG----- 290
V P ++ AW G+ +R +A P E + LG
Sbjct: 12 LRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWT 69
Query: 291 --DMERARAIYELAIS-QPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE-RTVHVK 346
A + + A P + P + G+ + + R +
Sbjct: 70 QQRHAEAAVLLQQASDAAP--EHPG-IALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPY 126
Query: 347 VWMNYAQFEMSSGDED 362
+ + D
Sbjct: 127 ITAQLLNWRRRLCDWR 142
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 32.8 bits (74), Expect = 0.26
Identities = 14/132 (10%), Positives = 32/132 (24%), Gaps = 6/132 (4%)
Query: 178 RKFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYE 237
+ RA + + P+ A KA + + + +
Sbjct: 208 LHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267
Query: 238 EEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA-----ELESLLGDM 292
+ N + +G D + I + + ++ + G
Sbjct: 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGID-LEMSWLNYVLLGKVYEMKGMN 326
Query: 293 ERARAIYELAIS 304
A Y A +
Sbjct: 327 REAADAYLTAFN 338
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.3 bits (76), Expect = 0.27
Identities = 24/150 (16%), Positives = 57/150 (38%), Gaps = 1/150 (0%)
Query: 371 FERANQALKASSEKEERVMLLEAWKE-FEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEG 429
F LK + ++EE E + E Q + +L K + +++
Sbjct: 843 FFXIXPLLKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ 902
Query: 430 VEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDK 489
E + + A K L+ + + EE++ ++ E + + + ++
Sbjct: 903 AETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEE 962
Query: 490 ERDREEEDEKKDERDRDSDDERDDREEDSI 519
+ + EE +K + ++ + D + + ED I
Sbjct: 963 QLEEEEAARQKLQLEKVTADGKIKKMEDDI 992
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 31.3 bits (71), Expect = 0.32
Identities = 8/74 (10%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFA-----ELESLLG 290
++ + + + + G + ++Y E LG
Sbjct: 41 FQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLG 100
Query: 291 DMERARAIYELAIS 304
D++ A + + A +
Sbjct: 101 DLDGAESGFYSARA 114
Score = 27.0 bits (60), Expect = 8.2
Identities = 7/74 (9%), Positives = 16/74 (21%), Gaps = 5/74 (6%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPP-----TKFAELESLLG 290
+ + + + G D ++ ++ LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 291 DMERARAIYELAIS 304
E+A Y
Sbjct: 67 LYEQALQSYSYGAL 80
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail
virulence; 1.54A {Neisseria meningitidis}
Length = 225
Score = 31.8 bits (73), Expect = 0.38
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE--------LES 287
E+ + S+P N AW + + D +E++ +A++ P AE L
Sbjct: 31 IEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--DSAEINNNYGWFLCG 88
Query: 288 LLGDMERARAIYELAISQP 306
L + A ++ A++ P
Sbjct: 89 RLNRPAESMAYFDKALADP 107
Score = 31.5 bits (72), Expect = 0.53
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELE---SLLGDM 292
+ + + P A+ + R G +++ + + + +L + +
Sbjct: 136 LKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKAL 195
Query: 293 ERARAIYELAIS 304
A+A YE
Sbjct: 196 GNAQAAYEYEAQ 207
Score = 29.9 bits (68), Expect = 1.4
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 6/105 (5%)
Query: 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA---NIPPTKF--AELESLLGDME 293
+ P Y A + +G L +R++A PP A + L G +
Sbjct: 105 ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164
Query: 294 RARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERL 338
A ++ S+ + + + G E +L
Sbjct: 165 DADYYFKKYQSRVEVLQADDLLLG-WKIAKALGNAQAAYEYEAQL 208
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 31.6 bits (71), Expect = 0.40
Identities = 23/186 (12%), Positives = 62/186 (33%), Gaps = 45/186 (24%)
Query: 229 VSKRKFQYEEEVNSNPNNYD----AWFDYLRLLED-------EGNADLIRETYERAIANI 277
+++ K YE+ + ++ + D + DY+ + E +++R T ER +
Sbjct: 8 LNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLI-- 65
Query: 278 PPTKFAELESLLGDMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHER 337
++E+ D + +W YI+ + + +
Sbjct: 66 ---YIQDMETYRNDPRFLK-----------------IWIWYINLFLSN-NFHESENTFKY 104
Query: 338 LLER---TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVMLLEAW 394
+ + T + +++ ++ A+ + E + + R LL +
Sbjct: 105 MFNKGIGTKLSLFYEEFSKLLENAQF---FLEAKVLLEL---GAENNCRPYNR--LLRSL 156
Query: 395 KEFEAQ 400
+E +
Sbjct: 157 SNYEDR 162
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 31.9 bits (73), Expect = 0.46
Identities = 18/129 (13%), Positives = 42/129 (32%), Gaps = 17/129 (13%)
Query: 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
+ A+ P D + E+K ++ E + +E+
Sbjct: 125 GRDKLAQDDLLAFYQDDPND--PFRSLWLYLAEQKLDEKQAKEVLKQH-----FEKSDKE 177
Query: 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-------LESLLGDMERA 295
F YL + ++ + ++ + +E LGD++ A
Sbjct: 178 QWGWNIVEF-YLGNISEQTLMERLKADATDNTSLAE--HLSETNFYLGKYYLSLGDLDSA 234
Query: 296 RAIYELAIS 304
A+++LA++
Sbjct: 235 TALFKLAVA 243
Score = 29.2 bits (66), Expect = 3.3
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 9/76 (11%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-------LESL 288
++ ++ L + G L R + +A+A P E +
Sbjct: 32 LASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQ 89
Query: 289 LGDMERARAIYELAIS 304
G+ + A ++ +
Sbjct: 90 AGNFDAAYEAFDSVLE 105
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 32.3 bits (74), Expect = 0.48
Identities = 18/193 (9%), Positives = 54/193 (27%), Gaps = 10/193 (5%)
Query: 315 WKAYIDFEVGQGERDKVRELHER--LLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFE 372
+ + E L +R + ++ + +++ R +
Sbjct: 820 GQEVSELEAIYNSLQTKLRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELK 879
Query: 373 RANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGVEE 432
R + + + LE W ++ + + + + K ++ ++ E +
Sbjct: 880 RQKKIAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAV-QAKLKNLEAFDGE-CQS 937
Query: 433 GWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERD 492
+ + +L E + E++ ++ ++ E
Sbjct: 938 LEGQS------NSDLLSILAQLTELNYNGVPELTERKDTFFAQQWTGVKSSAETYKNTLL 991
Query: 493 REEEDEKKDERDR 505
E E +K E
Sbjct: 992 AELERLQKIEDLH 1004
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 29.7 bits (67), Expect = 0.82
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAEL 285
+P + +E NA+ + + + P ++ +L
Sbjct: 74 LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP--QYEQL 121
Score = 27.4 bits (61), Expect = 4.7
Identities = 11/75 (14%), Positives = 18/75 (24%), Gaps = 7/75 (9%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESL------L 289
+E P +AW + L A + P A +L
Sbjct: 40 FEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSHTNE 98
Query: 290 GDMERARAIYELAIS 304
+ A A +
Sbjct: 99 HNANAALASLRAWLL 113
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.97
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 29/58 (50%)
Query: 327 ERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSV-SLARRVFERANQALKASSE 383
E+ +++L L K+ YA +DS +L A+KA+ E
Sbjct: 18 EKQALKKLQASL-------KL---YA--------DDSAPAL----------AIKATME 47
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 30.7 bits (70), Expect = 0.98
Identities = 21/131 (16%), Positives = 40/131 (30%), Gaps = 14/131 (10%)
Query: 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239
F+ + A ++ +A +E D A +D+ Y +
Sbjct: 14 FKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLA-QKDIE------TYFSK 66
Query: 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKF------AELESLLGDME 293
VN+ + Y ++L +G L + Y+ A+ T+ G+
Sbjct: 67 VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD-RDTTRLDMYGQIGSYFYNKGNFP 125
Query: 294 RARAIYELAIS 304
A E I
Sbjct: 126 LAIQYMEKQIR 136
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 30.9 bits (70), Expect = 1.0
Identities = 29/256 (11%), Positives = 74/256 (28%), Gaps = 39/256 (15%)
Query: 37 EVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREE 96
F IF + + E K + E+ + ++ +
Sbjct: 165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD 224
Query: 97 EDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKF 156
++ ++ + + +N GA + ++A+E ++ +++A
Sbjct: 225 KNNEDEKLKEKLAISLEHTGIFKFLKNDP-LGAHEDIKKAIEL--FPRVNSYIYMALIMA 281
Query: 157 EEGQREK------------------YGDRAGIEDVIVSKRKFQYEEHERARVIYKYALDH 198
+ + Y R + F + +++A + A +
Sbjct: 282 DRNDSTEYYNYFDKALKLDSNNSSVYYHRGQM--------NFILQNYDQAGKDFDKAKEL 333
Query: 199 IPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLE 258
P++ I A + + D + E P + + +L
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDC-ETL---------FSEAKRKFPEAPEVPNFFAEILT 383
Query: 259 DEGNADLIRETYERAI 274
D+ + D + Y+ AI
Sbjct: 384 DKNDFDKALKQYDLAI 399
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 29.8 bits (67), Expect = 1.3
Identities = 16/114 (14%), Positives = 41/114 (35%), Gaps = 10/114 (8%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-----FAELESLL 289
++++ +NP N + W + + Y +A+ A +
Sbjct: 32 ALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ 91
Query: 290 GD---MERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
+ RA+ + A++ ++ L+ A F Q + EL +++++
Sbjct: 92 ASQHMTAQTRAMIDKALALDSNEITALMLLASDAFM--QANYAQAIELWQKVMD 143
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.8 bits (70), Expect = 1.4
Identities = 25/146 (17%), Positives = 54/146 (36%), Gaps = 22/146 (15%)
Query: 372 ERANQALKASSEKEERVMLLEA-WKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDEGV 430
+ ++ K E++ LE + + D R +++ + + A RV +
Sbjct: 935 RKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL----- 989
Query: 431 EEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENE-EEERDK 489
++E AK K L + + KK +EE +K E +E +E+
Sbjct: 990 -------------QEEIAKLR-KELHQTQTEKKTIEEWA-DKYKHETEQLVSELKEQNTL 1034
Query: 490 ERDREEEDEKKDERDRDSDDERDDRE 515
+ +EE ++ E +++
Sbjct: 1035 LKTEKEELNRRIHDQAKEITETMEKK 1060
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella
flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 29.4 bits (66), Expect = 1.5
Identities = 11/77 (14%), Positives = 22/77 (28%), Gaps = 5/77 (6%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIAN-----IPPTKFAELESLLG 290
+ + N D + + + + Y A A P + + L
Sbjct: 59 FRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLK 118
Query: 291 DMERARAIYELAISQPR 307
+A+ +EL I
Sbjct: 119 APLKAKECFELVIQHSN 135
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase
110; OGT, glcnac, nucleoporin, O-linked glycosylation,
TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 30.2 bits (69), Expect = 1.9
Identities = 21/128 (16%), Positives = 38/128 (29%), Gaps = 19/128 (14%)
Query: 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243
+ E A P + + + + + DR+ + N
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRS-AHF---------STLAIKQN 63
Query: 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-------LESLLGDMERAR 296
P +A+ + + ++ G E Y A+ P F + GDME A
Sbjct: 64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP--DFIDGYINLAAALVAAGDMEGAV 121
Query: 297 AIYELAIS 304
Y A+
Sbjct: 122 QAYVSALQ 129
Score = 29.0 bits (66), Expect = 3.5
Identities = 29/121 (23%), Positives = 45/121 (37%), Gaps = 12/121 (9%)
Query: 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243
+ + A Y++AL P I A + + A ++ Y + N
Sbjct: 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGA-VQA---------YVSALQYN 131
Query: 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAI 303
P+ Y D LL+ G + + Y +AI P FA S LG + A+ LAI
Sbjct: 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP--NFAVAWSNLGCVFNAQGEIWLAI 189
Query: 304 S 304
Sbjct: 190 H 190
Score = 28.7 bits (65), Expect = 5.0
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243
+ A Y+ A++ P A A + EK A + Y +
Sbjct: 252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEA-EDC---------YNTALRLC 301
Query: 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-------LESLLGDMERAR 296
P + D+ + + ++GN + Y +A+ P +FA + G ++ A
Sbjct: 302 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEAL 359
Query: 297 AIYELAIS 304
Y+ AI
Sbjct: 360 MHYKEAIR 367
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 30.0 bits (68), Expect = 1.9
Identities = 23/121 (19%), Positives = 39/121 (32%), Gaps = 4/121 (3%)
Query: 184 EHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSN 243
E ERA+ + + K AE + + A + + + K Y +
Sbjct: 4 EFERAKAAVESDTEFWDKM-QAEWEEMARRNWISENQEAQNQVTVSASEK-GYYFHTENP 61
Query: 244 PNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIYELAI 303
++ F+ EG+ + E AI P AE LG + + AI
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAI 119
Query: 304 S 304
Sbjct: 120 V 120
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 30.0 bits (67), Expect = 2.0
Identities = 12/96 (12%), Positives = 26/96 (27%), Gaps = 9/96 (9%)
Query: 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNS 242
EE E+ + L + A + K ++ + V
Sbjct: 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVL---------LSKAVKL 132
Query: 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
P +AW + +G+ + A+ +
Sbjct: 133 EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK 168
>2pb7_A E3 ubiquitin-protein ligase UHRF1; beta barrel, NEW fold; 1.90A
{Homo sapiens} SCOP: b.122.1.12
Length = 239
Score = 29.8 bits (66), Expect = 2.1
Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 10/143 (6%)
Query: 371 FERANQALKASSEKEERVMLLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKTYNDE-G 429
N+AL + K++ + R K + A Y+
Sbjct: 97 LTNTNRALALNCFAPINDQEGAEAKDWRSGKPVRVVRNVKGGKNSKYAPAEGNRYDGIYK 156
Query: 430 VEEGWEE-------VFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKEN 482
V + W E V+ Y+ D+ K + K + + G A
Sbjct: 157 VVKYWPEKGKSGFLVWRYLLRRDDDEPGPWTKEGKDRIKKLGLTMQY--PEGYLEALANR 214
Query: 483 EEEERDKERDREEEDEKKDERDR 505
E E+ + +R+ EE+ E R
Sbjct: 215 EREKENSKREEEEQQEGGFASPR 237
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 29.8 bits (67), Expect = 2.3
Identities = 32/253 (12%), Positives = 77/253 (30%), Gaps = 42/253 (16%)
Query: 76 EEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYER 135
+ N E K+ + +D G + + +R V+ + F A++ Y+
Sbjct: 167 QGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF-DRAKECYKE 225
Query: 136 AVEFF-----------------GEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
A+ +E D L + ++ + + +
Sbjct: 226 ALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYML-----KLN 280
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEE 238
K +E+ R Y +++ + K + KA T+ + + +
Sbjct: 281 KTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV-LAI---------TTK 330
Query: 239 EVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-------LESLLGD 291
+ +P N D + +L L + G + + + P + A +
Sbjct: 331 ILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP--EKAVTWLAVGIYYLCVNK 388
Query: 292 MERARAIYELAIS 304
+ AR + + +
Sbjct: 389 ISEARRYFSKSST 401
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 28.0 bits (63), Expect = 2.4
Identities = 10/69 (14%), Positives = 18/69 (26%), Gaps = 9/69 (13%)
Query: 243 NPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAE-------LESLLGDMERA 295
+P + + + NA +E + P + L L + A
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDP--DYVGTYYHLGKLYERLDRTDDA 60
Query: 296 RAIYELAIS 304
Y I
Sbjct: 61 IDTYAQGIE 69
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 29.3 bits (65), Expect = 2.5
Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 20/109 (18%)
Query: 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAE 284
R+F + W Y+ +++ E + + + +A
Sbjct: 105 REFVRNPLYKDDVRYLRIWMQYVNYIDEP------VELFSFLAHHHIGQESSIFYEEYAN 158
Query: 285 LESLLGDMERARAIYELAIS---QPRLDMPELVWKAYIDFEVGQGERDK 330
G ++A +Y+ +P + Y F E
Sbjct: 159 YFESRGLFQKADEVYQKGKRMKAKPF----LRFQQKYQQFTHRWLEFAP 203
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 29.6 bits (66), Expect = 3.0
Identities = 8/76 (10%), Positives = 20/76 (26%), Gaps = 7/76 (9%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESL------ 288
+ P+ A + + + +A + P + + S
Sbjct: 282 VLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHG-LTPDQVVAIASHDGGKQA 340
Query: 289 LGDMERARAIYELAIS 304
L ++R + A
Sbjct: 341 LETVQRLLPVLCQAHG 356
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide
repeat, type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 28.0 bits (62), Expect = 4.4
Identities = 11/74 (14%), Positives = 21/74 (28%), Gaps = 5/74 (6%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIA-----NIPPTKFAELESLLG 290
++ + + + + G DL +Y P AE G
Sbjct: 44 FQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXG 103
Query: 291 DMERARAIYELAIS 304
++ A + LA
Sbjct: 104 ELAEAESGLFLAQE 117
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate
binding protein, selectivity helix, TR membrane; HET:
4CS; 2.90A {Silicibacter pomeroyi dss-3}
Length = 326
Score = 28.8 bits (65), Expect = 4.9
Identities = 11/87 (12%), Positives = 30/87 (34%), Gaps = 6/87 (6%)
Query: 60 KAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVF 119
+ E Q ++ + A + ++ + + K ++ + L
Sbjct: 232 DFYDGLSAEDQ--QLVQNAA-LAAYDHTVVYQQQAADTELAKI---MEAKPEMQVTVLTD 285
Query: 120 EEQNGFVSGARKVYERAVEFFGEENLD 146
E+++ F A +V + +E G+
Sbjct: 286 EQRSCFKEAAAEVEAKFIEMTGDSGAA 312
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal,
ribosomal R ribosomal protein, eukaryotic ribosome,
RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB:
3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Length = 252
Score = 28.3 bits (63), Expect = 6.1
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 439 DYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDE 498
D P + K ++ L+ + A E + + + + RD EE ++
Sbjct: 157 DVAIPCNNRGKHSIGLI----WYLLAREVLRLRGALVDRTQPWSIMPDLYFYRDPEEVEQ 212
Query: 499 KKDERDRDSDDERDDREED 517
+ E + ++ +E+
Sbjct: 213 QVAEEATTEEAGEEEAKEE 231
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 27.5 bits (61), Expect = 6.5
Identities = 10/81 (12%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTK-------FAE 284
++F +++ +++P + D + +E + T +A
Sbjct: 56 KEFLDKKKYHNDPRFISYCLKFAEYNSDL------HQFFEFLYNHGIGTLSSPLYIAWAG 109
Query: 285 LESLLGDMERARAIYELAISQ 305
G+++ A A+ + I
Sbjct: 110 HLEAQGELQHASAVLQRGIQN 130
>2z1a_A 5'-nucleotidase; metal-binding, nucleotide-binding, hydrolase,
structural genomics, NPPSFA; HET: THM; 1.75A {Thermus
thermophilus} SCOP: d.114.1.1 d.159.1.2
Length = 552
Score = 28.5 bits (64), Expect = 6.6
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 424 TYNDEGVEEGWEEVFDYIFPEDEAAKPNLKLLEKAKAWKKAMEEKQGNKIGEEGANKENE 483
T++ +G ++ + + EAA + E A+ + + I E K +
Sbjct: 287 TFDAKGELLAYK--GEALLMTPEAAPEDFFAKEALLAYAQPVMALMQQVIAE---AKVDL 341
Query: 484 EEERDKERDRE 494
ER R RE
Sbjct: 342 VGERAVVRRRE 352
>1sr8_A Cobalamin biosynthesis protein (CBID); structural genomics, PSI,
protein structure initiative, center for structural
genomics, MCSG; 1.90A {Archaeoglobus fulgidus} SCOP:
e.54.1.1
Length = 298
Score = 27.9 bits (62), Expect = 7.7
Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 17/92 (18%)
Query: 100 RKDEGDRDSDTTYGMR-ELVFEEQNGFVSG---------------ARKVYERAV-EFFGE 142
RK GD + D T G+ E E +G G A+ + E
Sbjct: 90 RKFSGDHEFDVTNGIIFEAEVCETSGIFFGRGVGVKAGEKAVSRSAKLQILENFIKASRE 149
Query: 143 ENLDEKLFIAFAKFEEGQREKYGDRAGIEDVI 174
N + I+ EE ++ ++ GI+ I
Sbjct: 150 FNFSGGVRISVPDGEEVAKKTGNEKVGIKGGI 181
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR
protein, peroxin 5, PEX5, PTS1 binding domain,
protein-peptide complex, receptor; 2.00A {Trypanosoma
brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 28.0 bits (63), Expect = 8.2
Identities = 7/67 (10%), Positives = 20/67 (29%), Gaps = 2/67 (2%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295
+P + +E NA+ + + + P ++ +L S+ +
Sbjct: 78 LNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQP--QYEQLGSVNLQADVD 135
Query: 296 RAIYELA 302
+
Sbjct: 136 IDDLNVQ 142
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 27.6 bits (61), Expect = 9.0
Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 4/125 (3%)
Query: 235 QYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP-PTKFAELESLLGDME 293
E + ++P + ++ LL +G+ + E ++I P A L
Sbjct: 19 LLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA 78
Query: 294 RARAIYELAISQPRLDMPELVWKAYI---DFEVGQGERDKVRELHERLLERTVHVKVWMN 350
+AR + + ++ + + + + ++V EL ++ E N
Sbjct: 79 QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 138
Query: 351 YAQFE 355
F
Sbjct: 139 DTSFS 143
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide
release factor 1, ribosome, structural genomics, BSGC
structure funded by NIH; 2.65A {Thermotoga maritima}
SCOP: e.38.1.1 PDB: 2fvo_A
Length = 342
Score = 27.6 bits (62), Expect = 9.8
Identities = 6/60 (10%), Positives = 16/60 (26%), Gaps = 6/60 (10%)
Query: 453 KLLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERDREEEDEKKDERDRDSDDERD 512
++ K+ E E + E E +K ++ ++ +
Sbjct: 34 EIENITNRIKETQEFI------ELLREEGENELEIEKYEKELDQLYQELLFLLSPEASDK 87
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 27.5 bits (62), Expect = 9.9
Identities = 9/75 (12%), Positives = 16/75 (21%), Gaps = 8/75 (10%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESL------L 289
+ V + + GNA ++ I K L
Sbjct: 61 LNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQ--KSLTEHRTADILTKL 118
Query: 290 GDMERARAIYELAIS 304
+ E+ E
Sbjct: 119 RNAEKELKKAEAEAY 133
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.310 0.131 0.364
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,470,908
Number of extensions: 567558
Number of successful extensions: 2392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1955
Number of HSP's successfully gapped: 308
Length of query: 521
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 423
Effective length of database: 3,965,535
Effective search space: 1677421305
Effective search space used: 1677421305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.8 bits)