RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8681
(521 letters)
>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa
subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 308
Score = 59.2 bits (142), Expect = 3e-10
Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 62/275 (22%)
Query: 206 EIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNNYDAWFDYLRLLEDEGN--- 262
+++K Y EK R + +I + F YE+ + ++ D W++ + LE
Sbjct: 9 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLA 68
Query: 263 -----------ADLIRETYERAIANIPP------TKFAELESLLGDMERARAIYELAISQ 305
+D YERAI+ + +A+ E E+ +IY ++
Sbjct: 69 EKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 128
Query: 306 PRLDMPELVWKAYIDFEVGQGERDKVRELHERLLER------------------------ 341
+D P LV+ Y+ F R + ++ E
Sbjct: 129 EDID-PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSV 187
Query: 342 ------------TVHVKVWMNYAQFEMSSGDEDSVSLARRVFERANQALKASSEKEERVM 389
+ + Y + ++++ R +FER + EK
Sbjct: 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNT---RVLFERVLTSGSLPPEKSG--E 242
Query: 390 LLEAWKEFEAQHGDDESRAKLNSKLPRRAKKRVKT 424
+ + FE+ GD S K+ + ++ +
Sbjct: 243 IWARFLAFESNIGDLASILKVEKRRFTAFREEYEG 277
Score = 31.1 bits (69), Expect = 0.31
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 12/155 (7%)
Query: 85 EEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVEF----- 139
EE R K R + T ++ + F + + R ++++A E
Sbjct: 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168
Query: 140 -------FGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKRKFQYEEHERARVIY 192
E + +AF FE G ++ + I + + R
Sbjct: 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228
Query: 193 KYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDV 227
+P +++ EI+ + E GD A I V
Sbjct: 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263
Score = 28.4 bits (62), Expect = 2.0
Identities = 19/167 (11%), Positives = 43/167 (25%), Gaps = 9/167 (5%)
Query: 119 FEEQNGFVSGARKVYERAVEFFGEENLDEKLFIAFAKFEEGQREKYGDRAGIEDVIVSKR 178
+EE +Y R + + ++I + KF R + R
Sbjct: 108 YEESRMKYEKVHSIYNRLLAIEDIDP--TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165
Query: 179 KFQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGD-------RAGIEDVIVSK 231
+ A + Y + D + E+ +Y ++
Sbjct: 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225
Query: 232 RKFQYEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIP 278
+ + + W +L + G+ I + +R
Sbjct: 226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272
Score = 26.5 bits (57), Expect = 7.8
Identities = 14/86 (16%), Positives = 28/86 (32%)
Query: 72 NKIGEEGANKENEEEERDKERDREEEDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARK 131
+ + + E + R E + R L FE G ++ K
Sbjct: 203 PEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILK 262
Query: 132 VYERAVEFFGEENLDEKLFIAFAKFE 157
V +R F EE ++ + +++
Sbjct: 263 VEKRRFTAFREEYEGKETALLVDRYK 288
>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 264
Score = 33.5 bits (76), Expect = 0.047
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 8/126 (6%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295
E + ++P + ++ LL +G+ + E ++I P + S L + +A
Sbjct: 19 LIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE--YLPGASQLRHLVKA 76
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEV------GQGERDKVRELHERLLERTVHVKVWM 349
+ + V + ++V EL ++ E
Sbjct: 77 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA 136
Query: 350 NYAQFE 355
N F
Sbjct: 137 NDTSFS 142
Score = 28.1 bits (62), Expect = 2.3
Identities = 20/130 (15%), Positives = 36/130 (27%), Gaps = 8/130 (6%)
Query: 259 DEGNADLIRETYERAIANIPP-----TKFAELESLLGDMERARAIYELAISQPRLDMPEL 313
EG E AI P + F EL + GD ERA +I +P
Sbjct: 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 314 VWKAYIDFEVGQGERDKVRELHERLLERTVHVKVWMNYAQFEMSSGDEDSVSLARRVFER 373
++ + ++L + + M S D + + +
Sbjct: 68 SQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ---VSELALQ 124
Query: 374 ANQALKASSE 383
+ +
Sbjct: 125 IEELRQEKGF 134
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT
{Human (Homo sapiens) [TaxId: 9606]}
Length = 388
Score = 31.6 bits (70), Expect = 0.23
Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 7/110 (6%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKF-----AELESLLG 290
Y + P+ DA+ + L+++G+ + Y A+ P A ++ G
Sbjct: 260 YRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQG 319
Query: 291 DMERARAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
++E A +Y A+ A + + QG+ + ++ +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ--QGKLQEALMHYKEAIR 367
Score = 29.6 bits (65), Expect = 1.1
Identities = 21/112 (18%), Positives = 35/112 (31%), Gaps = 12/112 (10%)
Query: 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239
+ A Y AL P + A E+ + A Y +
Sbjct: 282 KEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEA----------VRLYRKA 331
Query: 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGD 291
+ P A + +L+ +G Y+ AI P FA+ S +G+
Sbjct: 332 LEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP--TFADAYSNMGN 381
Score = 28.1 bits (61), Expect = 2.9
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 2/57 (3%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDM 292
+ P+N + D AI P AE S LG++
Sbjct: 22 CMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNV 76
>d2gaxa1 c.131.1.1 (A:1-135) Hypothetical protein Atu0240
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 135
Score = 28.1 bits (63), Expect = 1.2
Identities = 10/57 (17%), Positives = 24/57 (42%), Gaps = 13/57 (22%)
Query: 310 MPELVWKAYID-------------FEVGQGERDKVRELHERLLERTVHVKVWMNYAQ 353
E++ + Y D V +++ +R++H+R LER + +++
Sbjct: 34 TGEIIGEPYRDGAGNVYNPLSIQPIVVMATDQEALRKIHQRSLERDITTSLYIEEMF 90
>d2pi0a1 a.4.5.23 (A:5-110) Interferon regulatory factor 3, IRF-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 106
Score = 27.4 bits (61), Expect = 1.5
Identities = 11/54 (20%), Positives = 21/54 (38%)
Query: 183 EEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQY 236
+ R R+ +K+ L + I++A+ Y D+ KR F+
Sbjct: 25 KSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDLPTWKRNFRS 78
>d1dqaa4 d.179.1.1 (A:462-586,A:704-870) Substrate-binding domain of
HMG-CoA reductase {Human (Homo sapiens) [TaxId: 9606]}
Length = 292
Score = 28.7 bits (64), Expect = 1.6
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 281 KFAELESLLGDMERARAIYELAISQ 305
+LE+L+ ER +I +S+
Sbjct: 16 PAYKLETLIETHERGVSIRRQLLSK 40
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 1449
Score = 28.7 bits (63), Expect = 2.4
Identities = 36/235 (15%), Positives = 79/235 (33%), Gaps = 25/235 (10%)
Query: 36 EEVFDYIFPEDEAAKPNLK--LLEKAKAWKKAMEEKQGNKIGEEGANKENEEEERDKERD 93
++ D I D A + + LL ++ E +G+ +EE + +D
Sbjct: 879 KQSLDTIGGSDAAFEKRYRVDLLNTDHTLDPSLLESGSEILGDLKLQVLLDEEYKQLVKD 938
Query: 94 REEEDERKDEGDRDSDTTYGMRELVFEEQNGFVSGARKVYERAVE--FFGEENLDEKLFI 151
R+ E +G+ + +R ++ Q F K + ++ G ++L E L +
Sbjct: 939 RKFLREVFVDGEANWPLPVNIRRIIQNAQQTFHIDHTKPSDLTIKDIVLGVKDLQENLLV 998
Query: 152 AFAK---FEEGQRE-----------KYGDRAGIEDVIVSKRKFQ------YEEHERARVI 191
K + QR+ + R +++ ++K+ F + R+ V
Sbjct: 999 LRGKNEIIQNAQRDAVTLFCCLLRSRLATRRVLQEYRLTKQAFDWVLSNIEAQFLRSVVH 1058
Query: 192 YKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEEVNSNPNN 246
+ + E T++ + A + V + + V N
Sbjct: 1059 PGEMVGVLAAQSIGEPATQMTLNTFHFAGVAS-KKVTSGVPRLKEILNVAKNMKT 1112
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1
(PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 27.5 bits (59), Expect = 4.0
Identities = 13/90 (14%), Positives = 24/90 (26%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295
+E V +P + +AW + L R + P + A + + +
Sbjct: 42 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 101
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQ 325
I + L E G
Sbjct: 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA 131
>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing
protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 201
Score = 26.8 bits (58), Expect = 4.8
Identities = 16/150 (10%), Positives = 43/150 (28%), Gaps = 10/150 (6%)
Query: 180 FQYEEHERARVIYKYALDHIPKDRTAEIYKAYTIHEKKYGDRAGIEDVIVSKRKFQYEEE 239
F ++ A Y A+ P +A + + ++
Sbjct: 15 FVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQ----------ALADCRRA 64
Query: 240 VNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERARAIY 299
+ + + A F + + + D +RA + + + + + A+
Sbjct: 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 124
Query: 300 ELAISQPRLDMPELVWKAYIDFEVGQGERD 329
+I + R+ + + ER+
Sbjct: 125 WNSIEERRIHQESELHSYLTRLIAAERERE 154
>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 27.1 bits (59), Expect = 5.5
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 1/105 (0%)
Query: 236 YEEEVNSNPNNYDAWFDYLRLLEDEGNADLIRETYERAIANIPPTKFAELESLLGDMERA 295
Y P+N + L +G+ Y R+IA P A +L + +A
Sbjct: 175 YRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAA-STNLQKALSKA 233
Query: 296 RAIYELAISQPRLDMPELVWKAYIDFEVGQGERDKVRELHERLLE 340
+ ++ + + + +K+ L E+L E
Sbjct: 234 LESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKLEE 278
>d1sr8a_ e.54.1.1 (A:) Cobalamin biosynthesis protein CbiD {Archaeon
Archaeoglobus fulgidus [TaxId: 2234]}
Length = 282
Score = 26.3 bits (58), Expect = 8.8
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 100 RKDEGDRDSDTTYGMR-ELVFEEQNGFVSGA 129
RK GD + D T G+ E E +G G
Sbjct: 90 RKFSGDHEFDVTNGIIFEAEVCETSGIFFGR 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.310 0.131 0.364
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,023,026
Number of extensions: 106290
Number of successful extensions: 407
Number of sequences better than 10.0: 1
Number of HSP's gapped: 373
Number of HSP's successfully gapped: 71
Length of query: 521
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 432
Effective length of database: 1,185,626
Effective search space: 512190432
Effective search space used: 512190432
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.2 bits)