BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8682
(1956 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FCH|A Chain A, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of
Human Pex5
pdb|1FCH|B Chain B, Crystal Structure Of The Pts1 Complexed To The Tpr Region Of
Human Pex5
Length = 368
Score = 265 bits (677), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 153/344 (44%), Positives = 211/344 (61%), Gaps = 27/344 (7%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFAL 1611
W++L + +EM + ++ H W SD+ + S+ Y F E+NP+++ F
Sbjct: 16 FWDKLQAELEEMAKR----DAEAHPWLSDYD-DLTSATYDKGYQFEEENPLRDHPQPFEE 70
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P
Sbjct: 71 GLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD 130
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADAL---PSKLTRLA 1726
N ALMA+++ FTNE+ A + L+D +R P P+ A PSK
Sbjct: 131 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK----- 185
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF
Sbjct: 186 ----RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCF 240
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA
Sbjct: 241 TAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGA 300
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+ +AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 301 HREAVEHFLEALNMQRKSR---GPRG----EGGAMSENIWSTLR 337
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +AL VRP+
Sbjct: 191 LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 249
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLE 376
Q G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + PR +G
Sbjct: 281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEG------- 325
Query: 377 PRAVKEMSDSIWYSLRVVLSVLNRSDLH 404
MS++IW +LR+ LS+L +SD +
Sbjct: 326 ----GAMSENIWSTLRLALSMLGQSDAY 349
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1102 EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQLL 1142
EGDL + LL EAA +Q+P + E W LG + AENEQ L
Sbjct: 77 EGDLPNAVLL--FEAAVQQDPKHMEAWQYLGTTQAENEQEL 115
>pdb|3R9A|B Chain B, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
pdb|3R9A|D Chain D, Human Alanine-Glyoxylate Aminotransferase In Complex With
The Tpr Domain Of Human Pex5p
Length = 328
Score = 258 bits (658), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/302 (48%), Positives = 193/302 (63%), Gaps = 22/302 (7%)
Query: 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653
Y F E+NP+++ F G +L++GDLP+A+L EAA +Q+P + E W LG + AENE
Sbjct: 13 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 72
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPS 1711
Q+ AI+AL +CL ++P N ALMA+++ FTNE+ A +TL+D +R P P+
Sbjct: 73 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACETLRDWLRYTPAYAHLVTPA 132
Query: 1712 AYKADAL---PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNG 1768
A PSK L S + +V L+L A R P+ SIDPDVQ G
Sbjct: 133 EEGAGGAGLGPSK---------RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCG 182
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LGVLFNLS EYDKAVDCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L P
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYS 1888
G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + P G MS++IW +
Sbjct: 243 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG---PRG----EGGAMSENIWST 295
Query: 1889 LR 1890
LR
Sbjct: 296 LR 297
Score = 72.8 bits (177), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +AL VRP+
Sbjct: 151 LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLE 376
Q G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + PR +G
Sbjct: 241 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEG------- 285
Query: 377 PRAVKEMSDSIWYSLRVVLSVLNRSDLH 404
MS++IW +LR+ LS+L +SD +
Sbjct: 286 ----GAMSENIWSTLRLALSMLGQSDAY 309
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1102 EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQLL 1142
EGDL + LL EAA +Q+P + E W LG + AENEQ L
Sbjct: 37 EGDLPNAVLL--FEAAVQQDPKHMEAWQYLGTTQAENEQEL 75
>pdb|4EQF|A Chain A, Trip8b-1a#206-567 Interacting With The Carboxy-Terminal
Seven Residues Of Hcn2
Length = 365
Score = 256 bits (653), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 147/344 (42%), Positives = 211/344 (61%), Gaps = 32/344 (9%)
Query: 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS---SVSMHEYTFAEDNPMQNETNA 1608
W+++ + W+EM W S+ Q S S Y F +NP ++ A
Sbjct: 18 FWDKMQAEWEEMAR---------RNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G ++L++GDLP IL++EAA Q+P +AE W LGI+ AENE + AI AL +CL +
Sbjct: 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS-KLTRLAN 1727
+P NL+ALMA+++ +TN + DA + LK+ I+ NP+ + S LTR +
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWIK----QNPKYKYLVKNKKGSPGLTRRMS 184
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+SP+ S + + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F
Sbjct: 185 -----KSPVDS-SVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFN 237
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+AL VRP+D LWNRLGA+LANG+R EEAVEAY AL++ PGF+R+RYNLGI+C++LGA
Sbjct: 238 AALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY 297
Query: 1848 TQAVEHFLTALN-QQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AV +FLTAL+ Q+ + + PH +S +IW +LR
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPH-------PAISGNIWAALR 334
Score = 62.0 bits (149), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 2/75 (2%)
Query: 702 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 761
+SP+ S + + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F +AL V
Sbjct: 185 KSPVDS-SVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242
Query: 762 RPDFTELLVYLFSSL 776
RP+ L L ++L
Sbjct: 243 RPEDYSLWNRLGATL 257
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 18/91 (19%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLE 376
Q GF+R+RYNLGI+C++LGA +AV +FLTAL+ Q + R PH
Sbjct: 277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQR-----------KSRNQQQVPH--- 322
Query: 377 PRAVKEMSDSIWYSLRVVLSVLNRSDLHHCV 407
+S +IW +LR+ LS++++ +L
Sbjct: 323 ----PAISGNIWAALRIALSLMDQPELFQAA 349
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 1092 GTFQNMCPML-EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENE 1139
G F+ L EGDL + L +EAA Q+P +AE W LGI+ AENE
Sbjct: 67 GAFEEGLKRLKEGDLPVTILF--MEAAILQDPGDAEAWQFLGITQAENE 113
>pdb|2J9Q|A Chain A, A Novel Conformation For The Tpr Domain Of Pex5p
pdb|2J9Q|B Chain B, A Novel Conformation For The Tpr Domain Of Pex5p
Length = 328
Score = 255 bits (652), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 192/302 (63%), Gaps = 22/302 (7%)
Query: 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653
Y F E+NP+++ F G +L++GDLP+A+L EAA +Q+P + E W LG + AENE
Sbjct: 13 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 72
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPS 1711
Q+ AI+AL +CL ++P N ALMA+++ FTNE+ A + L+D +R P P+
Sbjct: 73 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 132
Query: 1712 AYKADAL---PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNG 1768
A PSK L S + +V L+L A R P+ SIDPDVQ G
Sbjct: 133 EEGAGGAGLGPSK---------RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCG 182
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LGVLFNLS EYDKAVDCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L P
Sbjct: 183 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 242
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYS 1888
G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + P G MS++IW +
Sbjct: 243 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG---PRG----EGGAMSENIWST 295
Query: 1889 LR 1890
LR
Sbjct: 296 LR 297
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +AL VRP+
Sbjct: 151 LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 209
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLE 376
Q G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + PR +G
Sbjct: 241 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEG------- 285
Query: 377 PRAVKEMSDSIWYSLRVVLSVLNRSDLH 404
MS++IW +LR+ LS+L +SD +
Sbjct: 286 ----GAMSENIWSTLRLALSMLGQSDAY 309
Score = 37.0 bits (84), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1102 EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQLL 1142
EGDL + LL EAA +Q+P + E W LG + AENEQ L
Sbjct: 37 EGDLPNAVLL--FEAAVQQDPKHMEAWQYLGTTQAENEQEL 75
>pdb|2C0M|A Chain A, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|B Chain B, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|C Chain C, Apo Form Of The Tpr Domain Of The Pex5p Receptor
pdb|2C0M|F Chain F, Apo Form Of The Tpr Domain Of The Pex5p Receptor
Length = 319
Score = 255 bits (651), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 192/302 (63%), Gaps = 22/302 (7%)
Query: 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653
Y F E+NP+++ F G +L++GDLP+A+L EAA +Q+P + E W LG + AENE
Sbjct: 4 YQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 63
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPS 1711
Q+ AI+AL +CL ++P N ALMA+++ FTNE+ A + L+D +R P P+
Sbjct: 64 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPA 123
Query: 1712 AYKADAL---PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNG 1768
A PSK L S + +V L+L A R P+ SIDPDVQ G
Sbjct: 124 EEGAGGAGLGPSK---------RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCG 173
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LGVLFNLS EYDKAVDCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L P
Sbjct: 174 LGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP 233
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYS 1888
G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + P G MS++IW +
Sbjct: 234 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG---PRG----EGGAMSENIWST 286
Query: 1889 LR 1890
LR
Sbjct: 287 LR 288
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +AL VRP+
Sbjct: 142 LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 200
Score = 71.6 bits (174), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLE 376
Q G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + PR +G
Sbjct: 232 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEG------- 276
Query: 377 PRAVKEMSDSIWYSLRVVLSVLNRSDLH 404
MS++IW +LR+ LS+L +SD +
Sbjct: 277 ----GAMSENIWSTLRLALSMLGQSDAY 300
Score = 37.0 bits (84), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1102 EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQLL 1142
EGDL + LL EAA +Q+P + E W LG + AENEQ L
Sbjct: 28 EGDLPNAVLL--FEAAVQQDPKHMEAWQYLGTTQAENEQEL 66
>pdb|2C0L|A Chain A, Tpr Domain Of Human Pex5p In Complex With Human Mscp2
Length = 305
Score = 243 bits (621), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 139/287 (48%), Positives = 183/287 (63%), Gaps = 22/287 (7%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G +L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL +
Sbjct: 5 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLEL 64
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADAL---PSKLT 1723
+P N ALMA+++ FTNE+ A + L+D +R P P+ A PSK
Sbjct: 65 KPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK-- 122
Query: 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAV
Sbjct: 123 -------RILGSLLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAV 174
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
DCF +AL VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++
Sbjct: 175 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN 234
Query: 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
LGA+ +AVEHFL ALN Q + P G MS++IW +LR
Sbjct: 235 LGAHREAVEHFLEALNMQRKSRG---PRG----EGGAMSENIWSTLR 274
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%), Gaps = 1/60 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
L S + +V L+L A R P+ SIDPDVQ GLGVLFNLS EYDKAVDCF +AL VRP+
Sbjct: 128 LLSDSLFLEVKELFLAAVRLDPT-SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 186
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 54/88 (61%), Gaps = 19/88 (21%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLE 376
Q G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + PR +G
Sbjct: 218 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG--------PRGEG------- 262
Query: 377 PRAVKEMSDSIWYSLRVVLSVLNRSDLH 404
MS++IW +LR+ LS+L +SD +
Sbjct: 263 ----GAMSENIWSTLRLALSMLGQSDAY 286
Score = 36.6 bits (83), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 1102 EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQLL 1142
EGDL + LL EAA +Q+P + E W LG + AENEQ L
Sbjct: 14 EGDLPNAVLL--FEAAVQQDPKHMEAWQYLGTTQAENEQEL 52
>pdb|3CVQ|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (tbpex5)complexed
To Pts1 Peptide (7- Skl)
Length = 327
Score = 142 bits (357), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 159/299 (53%), Gaps = 15/299 (5%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA ++EP+ E W SLG++ AEN
Sbjct: 9 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN 68
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
E+D AI AL+ +++P ++ A+++ TNE + AL +L+ + + S
Sbjct: 69 EKDGLAIIALNHARALDPADIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128
Query: 1713 -YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771
+AD L + + F +P RE +L A P+ D + LGV
Sbjct: 129 NLQADVDIDDLN-VQSEDFFFAAPNEYRECR----TLLHAALEMNPN---DAQLHASLGV 180
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
L+NLS+ YD A R A+++RPDD++LWN+LGA+LANGNRP+EA++AY+ AL ++PG+V
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240
Query: 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
R YN+ ++ ++ A + + A+ Q G TP G A +E + S+W R
Sbjct: 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG---GTTPTG---EASREATRSMWDFFR 293
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D + LGVL+NLS+ YD A R A+++RPD +L L ++L + P E
Sbjct: 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL------ANGNRPQE 224
Query: 791 LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRA 832
D +R +R + ++ +Q++ + KQ+ RA
Sbjct: 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Score = 37.7 bits (86), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLEPR 378
G+VR YN+ ++ ++ A + + A+ Q G TP G
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG---------------GTTPTG---E 279
Query: 379 AVKEMSDSIWYSLRVVLSVLNRSDL 403
A +E + S+W R++L+V+NR DL
Sbjct: 280 ASREATRSMWDFFRMLLNVMNRPDL 304
>pdb|3CV0|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphoglucoisomerase (Pgi) Pts1 Peptide
pdb|3CVL|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Phosphofructokinase (Pfk) Pts1 Peptide
pdb|3CVN|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To T. Brucei Glyceraldehyde-3-Phosphate Dehydrogenase
(Gapdh) Pts1 Peptide
pdb|3CVP|A Chain A, Structure Of Peroxisomal Targeting Signal 1 (Pts1) Binding
Domain Of Trypanosoma Brucei Peroxin 5 (Tbpex5)complexed
To Pts1 Peptide (10-Skl)
Length = 327
Score = 139 bits (351), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 157/299 (52%), Gaps = 15/299 (5%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA + P+ E W SLG++ AEN
Sbjct: 9 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN 68
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
E+D AI AL+ ++PK++ A+++ TNE + AL +L+ + + S
Sbjct: 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSV 128
Query: 1713 -YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771
+AD L + + F +P RE +L A P+ D + LGV
Sbjct: 129 NLQADVDIDDLN-VQSEDFFFAAPNEYRECR----TLLHAALEMNPN---DAQLHASLGV 180
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
L+NLS+ YD A R A+++RPDD++LWN+LGA+LANGNRP+EA++AY+ AL ++PG+V
Sbjct: 181 LYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV 240
Query: 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
R YN+ ++ ++ A + + A+ Q G TP G A +E + S+W R
Sbjct: 241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG---GTTPTG---EASREATRSMWDFFR 293
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D + LGVL+NLS+ YD A R A+++RPD +L L ++L + P E
Sbjct: 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATL------ANGNRPQE 224
Query: 791 LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRA 832
D +R +R + ++ +Q++ + KQ+ RA
Sbjct: 225 ALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 18/85 (21%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLEPR 378
G+VR YN+ ++ ++ A + + A+ Q G TP G
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG---------------GTTPTG---E 279
Query: 379 AVKEMSDSIWYSLRVVLSVLNRSDL 403
A +E + S+W R++L+V+NR DL
Sbjct: 280 ASREATRSMWDFFRMLLNVMNRPDL 304
>pdb|1W3B|A Chain A, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha.
pdb|1W3B|B Chain B, The Superhelical Tpr Domain Of O-Linked Glcnac Transferase
Reveals Structural Similarities To Importin Alpha
Length = 388
Score = 60.8 bits (146), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 28/226 (12%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
QG++ AI + E A +P+ + +++LG L E +A+AA + LS+ P +
Sbjct: 182 QGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH----- 236
Query: 1678 AISICFTNEACLH---DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734
++ N AC++ +D D R E P P LAN L +
Sbjct: 237 --AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH--------FPDAYCNLAN-ALKEKG 285
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
++ E Y A R CP+ + D N L + ++AV +R AL+V P
Sbjct: 286 SVAEAE------DCYNTALRLCPTHA---DSLNNLANIKREQGNIEEAVRLYRKALEVFP 336
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840
+ + + L + L + +EA+ Y A+++SP F A N+G T
Sbjct: 337 EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT 382
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 48/93 (51%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG ++ + +A++ +R AL+++PD + L A+L E AV+AY +ALQ +P
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
R +LG LG +A +L A+ Q
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ 165
Score = 40.0 bits (92), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 66/173 (38%), Gaps = 9/173 (5%)
Query: 1743 QQVLSLYLNAARQCPSQSIDPDVQNG---LGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
Q+ + Y +A R + PD +G L + + + AV + SALQ PD +
Sbjct: 84 QEAIEHYRHALR------LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCV 137
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ LG L R EEA Y A++ P F A NLG G A+ HF A+
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 1860 QQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQ 1912
D G + + ++ LR + H NL ++Q
Sbjct: 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQ 250
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 26/233 (11%)
Query: 1631 AAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH 1690
A KQ P AE + +LG E Q +AI L ++P ++ + ++ +
Sbjct: 59 AIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDME 118
Query: 1691 DALDTLKDKIRPGQESNPRPSAYKADA--LPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748
A+ + + NP ++D L L RL ++ +
Sbjct: 119 GAVQAYVSAL----QYNPDLYCVRSDLGNLLKALGRL-----------------EEAKAC 157
Query: 1749 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808
YL A P+ ++ + LG +FN E A+ F A+ + P+ + LG L
Sbjct: 158 YLKAIETQPNFAV---AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLK 214
Query: 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ AV AY AL LSP NL G A++ + A+ Q
Sbjct: 215 EARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267
Score = 35.8 bits (81), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 1770 GVLFNLSD------EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823
GVL LS D++ A++ P + ++ LG + +EA+E Y A
Sbjct: 34 GVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93
Query: 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L+L P F+ NL V G AV+ +++AL
Sbjct: 94 LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSAL 128
Score = 33.9 bits (76), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 52/262 (19%), Positives = 97/262 (37%), Gaps = 25/262 (9%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + + GD +A + +QEPDN V L L + + ++ + + P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
EA + + L +A++ + +R K D + +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALR-----------LKPDFIDG--------YI 105
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790
+ L + + + Y++A + P V++ LG L ++A C+ A+
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQYNPDLYC---VRSDLGNLLKALGRLEEAKACYLKAI 162
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
+ +P+ + W+ LG A+ + A+ L P F+ A NLG +A
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA 222
Query: 1851 VEHFLTALN---QQAATHDGLT 1869
V +L AL+ A H L
Sbjct: 223 VAAYLRALSLSPNHAVVHGNLA 244
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
Length = 125
Score = 55.5 bits (132), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P+++ W LG + +EA+E Y AL+L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
A YNLG G +A+E++ AL
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P+++ W LG + +EA+E Y AL+L P
Sbjct: 49 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 108
Query: 1829 GFVRARYNLG 1838
A+ NLG
Sbjct: 109 NNAEAKQNLG 118
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+P + + LG +QGD AI Y + A + +P+NAE W +LG + + +AI
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 1660 AALSKCLSIEPKNLEA 1675
K L ++P N EA
Sbjct: 64 EYYQKALELDPNNAEA 79
Score = 46.6 bits (109), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 36/67 (53%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ LG +QGD AI Y + A + +P+NAE W +LG + + +AI K L +
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Query: 1669 EPKNLEA 1675
+P N EA
Sbjct: 107 DPNNAEA 113
Score = 38.1 bits (87), Expect = 0.056, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
+ + W LG + +EA+E Y AL+L P A YNLG G +A+E++
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 1855 LTAL 1858
AL
Sbjct: 67 QKAL 70
Score = 30.8 bits (68), Expect = 8.8, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLG 1646
+ LG +QGD AI Y + A + +P+NAE +LG
Sbjct: 81 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 55.1 bits (131), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 49/90 (54%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P+++ W LG + +EA+E Y AL+L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYP 74
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
A YNLG G +A+E++ AL
Sbjct: 75 NNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 51.2 bits (121), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
E +Q+ L LY N A + LG + +YD+A++ ++ AL++ P+++
Sbjct: 30 EYYQKALELYPNNA----------EAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEA 79
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
W LG + +EA+E Y AL+L P A+ NLG
Sbjct: 80 WYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLG 118
Score = 44.3 bits (103), Expect = 6e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 37/76 (48%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+P + + LG +QGD AI Y + A + P+NAE W +LG + + +AI
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 1660 AALSKCLSIEPKNLEA 1675
K L + P N EA
Sbjct: 64 EYYQKALELYPNNAEA 79
Score = 44.3 bits (103), Expect = 7e-04, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 34/67 (50%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ LG +QGD AI Y + A + P+NAE W +LG + + +AI K L +
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106
Query: 1669 EPKNLEA 1675
P N EA
Sbjct: 107 YPNNAEA 113
Score = 37.7 bits (86), Expect = 0.071, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
+ + W LG + +EA+E Y AL+L P A YNLG G +A+E++
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 1855 LTAL 1858
AL
Sbjct: 67 QKAL 70
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 54.7 bits (130), Expect = 5e-07, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 60/130 (46%), Gaps = 18/130 (13%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P + W LG + +EA+E Y AL+L P
Sbjct: 7 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 66
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYS 1888
A YNLG G +A+E++ AL L+PR+ + WY+
Sbjct: 67 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALE-------------LDPRSAEA-----WYN 108
Query: 1889 LRGFHPPFGD 1898
L + GD
Sbjct: 109 LGNAYYKQGD 118
Score = 53.5 bits (127), Expect = 1e-06, Method: Composition-based stats.
Identities = 29/90 (32%), Positives = 47/90 (52%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P + W LG + +EA+E Y AL+L P
Sbjct: 41 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
A YNLG G +A+E++ AL
Sbjct: 101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 26/103 (25%), Positives = 50/103 (48%), Gaps = 4/103 (3%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ LG +QGD AI Y + A + +P +AE W +LG + + +AI K L +
Sbjct: 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 64
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS 1711
+P++ EA + + + +A++ + + E +PR +
Sbjct: 65 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPRSA 103
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 26/101 (25%), Positives = 49/101 (48%), Gaps = 4/101 (3%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ LG +QGD AI Y + A + +P +AE W +LG + + +AI K L +
Sbjct: 39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 98
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709
+P++ EA + + + +A++ + + E +PR
Sbjct: 99 DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL----ELDPR 135
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P + W LG + +EA+E Y AL+L P
Sbjct: 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134
Score = 40.0 bits (92), Expect = 0.015, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ LG +QGD AI Y + A + +P +AE W +LG + + +AI K L +
Sbjct: 73 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132
Query: 1669 EPKN 1672
+P++
Sbjct: 133 DPRS 136
Score = 38.9 bits (89), Expect = 0.032, Method: Composition-based stats.
Identities = 29/99 (29%), Positives = 42/99 (42%), Gaps = 18/99 (18%)
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
W LG + +EA+E Y AL+L P A YNLG G +A+E++ AL
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 1860 QQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898
L+PR+ + WY+L + GD
Sbjct: 64 -------------LDPRSAEA-----WYNLGNAYYKQGD 84
Score = 33.9 bits (76), Expect = 0.90, Method: Composition-based stats.
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 7/102 (6%)
Query: 784 KISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
K D DE +Y +KA E + R W Q D A Y++AL++D
Sbjct: 13 KQGDYDEAIEYY---QKALELDPRSAEA----WYNLGNAYYKQGDYDEAIEYYQKALELD 65
Query: 844 HRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
R+ W + + A + +A+ + PR+ + WY
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWY 107
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 16/70 (22%), Positives = 29/70 (41%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVT 875
W Q D A Y++AL++D R+ W + + A + +A+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 63
Query: 876 ILPRANQFWY 885
+ PR+ + WY
Sbjct: 64 LDPRSAEAWY 73
>pdb|1HXI|A Chain A, An Unexpected Extended Conformation For The Third Tpr Motif
Of The Peroxin Pex5 From Trypanosoma Brucei
Length = 121
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 58/105 (55%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA ++EP+ E W SLG++ AEN
Sbjct: 5 DYPFEANNPYXYHENPXEEGLSXLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN 64
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
E+D AI AL+ ++PK++ A+++ TNE + AL +L+
Sbjct: 65 EKDGLAIIALNHARXLDPKDIAVHAALAVSHTNEHNANAALASLR 109
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr
Motif
Length = 91
Score = 48.5 bits (114), Expect = 4e-05, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P+++ W LG + +EA+E Y AL+L P
Sbjct: 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 74
Query: 1829 GFVRARYNLG 1838
A+ NLG
Sbjct: 75 NNAEAKQNLG 84
Score = 47.0 bits (110), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+P + + LG +QGD AI Y + A + +P+NAE W +LG + + +AI
Sbjct: 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAI 63
Query: 1660 AALSKCLSIEPKNLEA 1675
K L ++P N EA
Sbjct: 64 EYYQKALELDPNNAEA 79
Score = 37.7 bits (86), Expect = 0.057, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 31/64 (48%)
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
+ + W LG + +EA+E Y AL+L P A YNLG G +A+E++
Sbjct: 7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYY 66
Query: 1855 LTAL 1858
AL
Sbjct: 67 QKAL 70
Score = 30.4 bits (67), Expect = 9.1, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLG 1646
+ LG +QGD AI Y + A + +P+NAE +LG
Sbjct: 47 YNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 47.8 bits (112), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 3/97 (3%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
+Q+ + Y A P+ + LG + +Y KA++ ++ AL++ P++++ W
Sbjct: 25 YQKAIEYYQKALELDPNNA---SAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWY 81
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
R G + ++A+E Y AL+L P +A+ NLG
Sbjct: 82 RRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLG 118
Score = 47.4 bits (111), Expect = 7e-05, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +Y KA++ ++ AL++ P+++ W LG + ++A+E Y AL+L P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A Y G G +A+E + AL
Sbjct: 75 NNAKAWYRRGNAYYKQGDYQKAIEDYQKAL 104
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG +QGD AI Y + A + +P+NA W +LG + + +AI K L ++P
Sbjct: 15 LGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDP 74
Query: 1671 KNLEA 1675
N +A
Sbjct: 75 NNAKA 79
Score = 41.2 bits (95), Expect = 0.005, Method: Composition-based stats.
Identities = 22/72 (30%), Positives = 36/72 (50%)
Query: 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663
N + + LG +QGD AI Y + A + +P+NA+ W G + + +AI
Sbjct: 42 NASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQ 101
Query: 1664 KCLSIEPKNLEA 1675
K L ++P N +A
Sbjct: 102 KALELDPNNAKA 113
Score = 37.0 bits (84), Expect = 0.12, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 31/64 (48%)
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
+ + W LG + ++A+E Y AL+L P A YNLG G +A+E++
Sbjct: 7 NSAEAWKNLGNAYYKQGDYQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYY 66
Query: 1855 LTAL 1858
AL
Sbjct: 67 QKAL 70
>pdb|3ASD|A Chain A, Mama R50e Mutant
Length = 200
Score = 45.4 bits (106), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 1763 PD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
PD V LG+ + +YD AV + P + + RLG +L N R +EA+++
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132
Query: 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA--LNQQAATHDGLTPHG 1872
+ AL L P + + + +G + +A+ HF A L++ A+ L P G
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVPRG 187
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ I+ +V+ LGV + +D+A+D F+ AL +RP++ ++ + S R EEA+
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Query: 1818 EAYHTALQLSPG 1829
+ A +L G
Sbjct: 165 PHFKKANELDEG 176
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ + D DV LG+ + + D+ + +L PD+ ++ LG + + + AV
Sbjct: 37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV 96
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH-GLEPR 1876
+ +P R+ LG+ +LG +A++ F AL GL P+ G R
Sbjct: 97 PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL--------GLRPNEGKVHR 148
Query: 1877 AVKEMSDSIWYSLRGFHPPFGDKLPH 1902
A+ + Y G H + LPH
Sbjct: 149 AI-----AFSYEQMGRHE---EALPH 166
Score = 35.0 bits (79), Expect = 0.43, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
A LG ++ G + LE + PDN +V LG++ + ++ A+ L K
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDK--IRPGQESNPRPSAYKADAL 1718
P N + + N +A+D+ K +RP + R A+ + +
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
>pdb|3AS8|A Chain A, Mama Msr-1 P41212
pdb|3ASF|A Chain A, Mama Msr-1 C2
pdb|3ASF|B Chain B, Mama Msr-1 C2
Length = 186
Score = 45.1 bits (105), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 5/113 (4%)
Query: 1763 PD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
PD V LG+ + +YD AV + P + + RLG +L N R +EA+++
Sbjct: 73 PDNIKVATVLGLTYVQVQKYDLAVPLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDS 132
Query: 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA--LNQQAATHDGLTP 1870
+ AL L P + + + +G++ +A+ HF A L++++A L P
Sbjct: 133 FKIALGLRPNEGKVHRAIAYSYEQMGSHEEALPHFKKANELDERSAVELALVP 185
Score = 37.4 bits (85), Expect = 0.087, Method: Composition-based stats.
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 2/115 (1%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
A LG ++ G + LE + PDN +V LG++ + ++ A+ L K
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAVPLLVKVAE 104
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDK--IRPGQESNPRPSAYKADALPS 1720
P N + + N +A+D+ K +RP + R AY + + S
Sbjct: 105 ANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQMGS 159
Score = 33.9 bits (76), Expect = 1.0, Method: Composition-based stats.
Identities = 27/141 (19%), Positives = 56/141 (39%), Gaps = 16/141 (11%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ + D +V LG+ + + D+ + ++ PD+ ++ LG + + + AV
Sbjct: 37 ADAFDVEVALHLGIAYVKTGAVDRGTELLERSIADAPDNIKVATVLGLTYVQVQKYDLAV 96
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN----------------QQ 1861
+ +P R+ LG+ +LG +A++ F AL +Q
Sbjct: 97 PLLVKVAEANPVNFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAYSYEQ 156
Query: 1862 AATHDGLTPHGLEPRAVKEMS 1882
+H+ PH + + E S
Sbjct: 157 MGSHEEALPHFKKANELDERS 177
>pdb|1XNF|A Chain A, Crystal Structure Of E.Coli Tpr-Protein Nlpi
pdb|1XNF|B Chain B, Crystal Structure Of E.Coli Tpr-Protein Nlpi
Length = 275
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
GVL++ A + F AL +RPD ++N LG L + A EA+ + L+L P
Sbjct: 50 GVLYDSLGLRALARNDFSQALAIRPDXPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT 109
Query: 1830 FVRARYNLGITCVHLGANTQAVEHFLT 1856
+ A N GI + G + A + L
Sbjct: 110 YNYAHLNRGIALYYGGRDKLAQDDLLA 136
>pdb|3ASG|A Chain A, Mama D159k Mutant 2
pdb|3ASG|B Chain B, Mama D159k Mutant 2
pdb|3ASH|A Chain A, Mama D159k Mutant 1
pdb|3ASH|B Chain B, Mama D159k Mutant 1
Length = 186
Score = 43.5 bits (101), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1763 PD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
PD V LG+ + +YD AV + P + + RLG +L N R +EA+++
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDS 132
Query: 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA--LNQQAATHDGLTP 1870
+ AL L P + + + +G + +A+ HF A L++ A+ L P
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVP 185
Score = 38.5 bits (88), Expect = 0.040, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 38/72 (52%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ I+ +V+ LGV +D+A+D F+ AL +RP++ ++ + S R EEA+
Sbjct: 105 ANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Query: 1818 EAYHTALQLSPG 1829
+ A +L G
Sbjct: 165 PHFKKANELDEG 176
Score = 36.2 bits (82), Expect = 0.19, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ + D DV LG+ + + D+ + +L PD+ ++ LG + + + AV
Sbjct: 37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV 96
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH-GLEPR 1876
+ +P R+ LG+ +LG +A++ F AL GL P+ G R
Sbjct: 97 PLLIKVAEANPINFNVRFRLGVALKNLGRFDEAIDSFKIAL--------GLRPNEGKVHR 148
Query: 1877 AVKEMSDSIWYSLRGFHPPFGDKLPH 1902
A+ + Y G H + LPH
Sbjct: 149 AI-----AFSYEQMGRHE---EALPH 166
Score = 35.0 bits (79), Expect = 0.39, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
A LG ++ G + LE + PDN +V LG++ + ++ A+ L K
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDK--IRPGQESNPRPSAYKADAL 1718
P N + + N +A+D+ K +RP + R A+ + +
Sbjct: 105 ANPINFNVRFRLGVALKNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
>pdb|3AS4|A Chain A, Mama Amb-1 C2221
pdb|3AS5|A Chain A, Mama Amb-1 P212121
pdb|3AS5|B Chain B, Mama Amb-1 P212121
Length = 186
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 5/113 (4%)
Query: 1763 PD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
PD V LG+ + +YD AV + P + + RLG +L N R +EA+++
Sbjct: 73 PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDS 132
Query: 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA--LNQQAATHDGLTP 1870
+ AL L P + + + +G + +A+ HF A L++ A+ L P
Sbjct: 133 FKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELALVP 185
Score = 38.9 bits (89), Expect = 0.027, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 39/72 (54%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ I+ +V+ LGV + +D+A+D F+ AL +RP++ ++ + S R EEA+
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164
Query: 1818 EAYHTALQLSPG 1829
+ A +L G
Sbjct: 165 PHFKKANELDEG 176
Score = 35.8 bits (81), Expect = 0.25, Method: Composition-based stats.
Identities = 35/146 (23%), Positives = 61/146 (41%), Gaps = 17/146 (11%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
+ + D DV LG+ + + D+ + +L PD+ ++ LG + + + AV
Sbjct: 37 ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAV 96
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH-GLEPR 1876
+ +P R+ LG+ +LG +A++ F AL GL P+ G R
Sbjct: 97 PLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIAL--------GLRPNEGKVHR 148
Query: 1877 AVKEMSDSIWYSLRGFHPPFGDKLPH 1902
A+ + Y G H + LPH
Sbjct: 149 AI-----AFSYEQMGRHE---EALPH 166
Score = 35.0 bits (79), Expect = 0.43, Method: Composition-based stats.
Identities = 25/113 (22%), Positives = 46/113 (40%), Gaps = 2/113 (1%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
A LG ++ G + LE + PDN +V LG++ + ++ A+ L K
Sbjct: 45 ALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAE 104
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDK--IRPGQESNPRPSAYKADAL 1718
P N + + N +A+D+ K +RP + R A+ + +
Sbjct: 105 ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQM 157
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 43.1 bits (100), Expect = 0.002, Method: Composition-based stats.
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
DE A+D + A+ + + + +LG + ++A+EAY + + PGF+RA +
Sbjct: 87 DEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQS 146
Query: 1837 LGITCVHLGANTQAVEHF 1854
+G+ G +AV++F
Sbjct: 147 IGLAYEGKGLRDEAVKYF 164
Score = 37.4 bits (85), Expect = 0.078, Method: Composition-based stats.
Identities = 32/163 (19%), Positives = 69/163 (42%), Gaps = 22/163 (13%)
Query: 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717
AI A K L +P N+E L+ + + + +DA+++LK + S AY
Sbjct: 24 AIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTS---AEAYYI-- 78
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
L + ++ + Q+ ++L ++ D LG++++
Sbjct: 79 -------LGSANFMIDEKQAAIDALQRAIAL----------NTVYADAYYKLGLVYDSMG 121
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820
E+DKA++ + + ++P R + +G + +EAV+ +
Sbjct: 122 EHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF 164
Score = 32.3 bits (72), Expect = 2.6, Method: Composition-based stats.
Identities = 19/65 (29%), Positives = 32/65 (49%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
+G +K +GD AI + K +P+N E L LG + + AI +L K + ++
Sbjct: 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT 70
Query: 1671 KNLEA 1675
+ EA
Sbjct: 71 TSAEA 75
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural Genomics
Consortium (Nesg) Target Mrr121a
Length = 112
Score = 42.4 bits (98), Expect = 0.003, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826
GVL + Y +++D F A+Q+ P++S+ W G +L N R EEAV+ Y+ + +
Sbjct: 13 GVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINV 69
>pdb|2Q7F|A Chain A, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
pdb|2Q7F|B Chain B, Crystal Structure Of Yrrb: A Tpr Protein With An Unusual
Peptide- Binding Site
Length = 243
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 1603 QNETNA-FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+N+T A F G +G L A+ A +Q+P +A+ + + G++ A E +A+
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 1662 LSKCLSIEPKNLEALMA 1678
L K + I+P ++ AL A
Sbjct: 216 LDKAIDIQPDHMLALHA 232
Score = 40.8 bits (94), Expect = 0.007, Method: Composition-based stats.
Identities = 37/160 (23%), Positives = 65/160 (40%), Gaps = 12/160 (7%)
Query: 1714 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773
K DA+P + F + LSS ++ L+ Y A S + G G ++
Sbjct: 54 KEDAIP---------YINFANLLSSVNELERALAFYDKALELDSSAAT---AYYGAGNVY 101
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
+ + Y +A D F AL+ ++ L+ LG L +P+ A+ A++L+ A
Sbjct: 102 VVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEA 161
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873
R+ G+ + G +A+ F Q D G+
Sbjct: 162 RFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGV 201
Score = 35.8 bits (81), Expect = 0.26, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 47/92 (51%), Gaps = 1/92 (1%)
Query: 783 QKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
Q++ E DY+ + +AF I +N+ +I +A S +++RA + Y++AL++
Sbjct: 28 QQMGRGSEFGDYE-KAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL 86
Query: 843 DHRNITLWLKYTELEMRNRQVNHARNLWDRAV 874
D T + + + A++++++A+
Sbjct: 87 DSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL 118
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 22/93 (23%), Positives = 43/93 (46%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + ++ A+ + A+++ +D+ + G LAN +EA+ + + P
Sbjct: 131 LGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP 190
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
G A YN G+T + +A+E A++ Q
Sbjct: 191 GHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 40.8 bits (94), Expect = 0.008, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + +YD+A++ ++ AL++ P + W LG + +EA+E Y AL+L P
Sbjct: 9 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 68
Score = 40.0 bits (92), Expect = 0.014, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ LG +QGD AI Y + A + +P +AE W +LG + + +AI K L +
Sbjct: 7 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 66
Query: 1669 EPKN 1672
+P++
Sbjct: 67 DPRS 70
Score = 37.7 bits (86), Expect = 0.071, Method: Composition-based stats.
Identities = 21/59 (35%), Positives = 29/59 (49%)
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
W LG + +EA+E Y AL+L P A YNLG G +A+E++ AL
Sbjct: 6 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 64
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex With
A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp And
A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp And
A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 40.8 bits (94), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
CP+ + D N L + ++AV +R AL+V P+ + + L + L + +E
Sbjct: 5 CPTHA---DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQE 61
Query: 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867
A+ Y A+++SP F A N+G T + A++ + A+ A D
Sbjct: 62 ALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Score = 39.3 bits (90), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 3/96 (3%)
Query: 1743 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802
Q+ L Y A R P+ + D + +G + A+ C+ A+Q+ P + +
Sbjct: 60 QEALMHYKEAIRISPTFA---DAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSN 116
Query: 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
L + + EA+ +Y TAL+L P F A NL
Sbjct: 117 LASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152
Score = 35.0 bits (79), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/73 (24%), Positives = 37/73 (50%)
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
++ A+++ P + ++ +G +L + A++ Y A+Q++P F A NL G
Sbjct: 66 YKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSG 125
Query: 1846 ANTQAVEHFLTAL 1858
+A+ + TAL
Sbjct: 126 NIPEAIASYRTAL 138
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873
EEAV Y AL++ P F A NL G +A+ H+ A+ D + G
Sbjct: 26 EEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG- 84
Query: 1874 EPRAVKEMSD 1883
+KEM D
Sbjct: 85 --NTLKEMQD 92
>pdb|2FI7|A Chain A, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
pdb|2FI7|B Chain B, Crystal Structure Of Pilf : Functional Implication In The
Type 4 Pilus Biogenesis In Pseudomonas Aeruginosa
Length = 265
Score = 38.5 bits (88), Expect = 0.033, Method: Composition-based stats.
Identities = 33/103 (32%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 1761 IDP---DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
IDP D L V+F E A + +R AL ++R+ N G L R EEA
Sbjct: 79 IDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 138
Query: 1818 EAYHTALQ--LSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A Q L P R NLG+ + + QA E+F +L
Sbjct: 139 QRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 181
>pdb|2HO1|A Chain A, Functional Characterization Of Pseudomonas Aeruginosa Pilf
pdb|2HO1|B Chain B, Functional Characterization Of Pseudomonas Aeruginosa Pilf
Length = 252
Score = 38.1 bits (87), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 44/103 (42%), Gaps = 5/103 (4%)
Query: 1761 IDP---DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817
IDP D L V+F E A + +R AL ++R+ N G L R EEA
Sbjct: 66 IDPSSADAHAALAVVFQTEXEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAY 125
Query: 1818 EAYHTALQ--LSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A Q L P R NLG+ + QA E+F +L
Sbjct: 126 QRLLEASQDTLYPERSRVFENLGLVSLQXKKPAQAKEYFEKSL 168
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 37.7 bits (86), Expect = 0.057, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 728 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q DP LG+L+ L + DKAV+C+R ++++ P +L++
Sbjct: 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103
Score = 37.4 bits (85), Expect = 0.084, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1759 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
Q DP LG+L+ L + DKAV+C+R ++++ P L
Sbjct: 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDL 101
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 37.7 bits (86), Expect = 0.057, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 728 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q DP LG+L+ L + DKAV+C+R ++++ P +L++
Sbjct: 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVL 103
Score = 37.4 bits (85), Expect = 0.085, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1759 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
Q DP LG+L+ L + DKAV+C+R ++++ P L
Sbjct: 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDL 101
>pdb|4GA1|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 37.7 bits (86), Expect = 0.062, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 27/43 (62%)
Query: 728 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q DP LG+L+ L + DKAV+C+R ++++ P +L++
Sbjct: 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPXQKDLVL 103
Score = 37.4 bits (85), Expect = 0.093, Method: Composition-based stats.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 1759 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
Q DP LG+L+ L + DKAV+C+R ++++ P L
Sbjct: 61 QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPXQKDL 101
>pdb|2OND|A Chain A, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
pdb|2OND|B Chain B, Crystal Structure Of The Hat-C Domain Of Murine Cstf-77
Length = 308
Score = 36.2 bits (82), Expect = 0.17, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 800 KAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL-WLKYTELEM 858
+A ++KN ++ + YA +EES+ + ++ SIY R L ++ + TL +++Y +
Sbjct: 89 RAISTLLKKNXLL---YFAYADYEESRXKYEKVHSIYNRLLAIEDIDPTLVYIQYXKFAR 145
Query: 859 RNRQVNHARNLWDRA 873
R + R ++ +A
Sbjct: 146 RAEGIKSGRXIFKKA 160
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 35.4 bits (80), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 21 VTSHFVQDKGLRDEGFHRPYTHEENSFANAHPDQLLGEFWEHNLGNMQQAFRMDNLLAEM 80
+ +H + + G+H P+TH++N F N+ QLL E W N ++Q MD ++
Sbjct: 157 IGAHTCGETHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLN-PKVEQMQLMDRATTKL 215
Query: 81 RDIEA-ASQRPKPQQSAPISLLARQDDA--REWANQF---LEAGSHFEHTPPET 128
+ + P + L A+ +D +++AN F E G+ H P +
Sbjct: 216 MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRNLHKAPAS 269
>pdb|2OOE|A Chain A, Crystal Structure Of Hat Domain Of Murine Cstf-77
Length = 530
Score = 35.4 bits (80), Expect = 0.35, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 800 KAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL-WLKYTELEM 858
+A ++KN ++ + YA +EES+ + ++ SIY R L ++ + TL +++Y +
Sbjct: 311 RAISTLLKKNMLL---YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 367
Query: 859 RNRQVNHARNLWDRA 873
R + R ++ +A
Sbjct: 368 RAEGIKSGRMIFKKA 382
Score = 30.8 bits (68), Expect = 7.5, Method: Composition-based stats.
Identities = 32/144 (22%), Positives = 54/144 (37%), Gaps = 40/144 (27%)
Query: 789 DELRDYQHRKRKAFE-----------------DNIRKNRMVISNWIKYAQWEESQKQ--- 828
D RDY + +R A E N + + W KY QWE+S
Sbjct: 189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248
Query: 829 -----VDRARSIYERALDVDHRNITLWLKYTEL------------EMRNRQV--NHARNL 869
R YE+ L V + +W + + +M N ++ + A N+
Sbjct: 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI 308
Query: 870 WDRAVTILPRANQ-FWYKYTYMEE 892
++RA++ L + N ++ Y EE
Sbjct: 309 YERAISTLLKKNMLLYFAYADYEE 332
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 19/81 (23%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAAL 1662
Q E N G E ++GD P+A+ + A K++P+NA ++ + L + + +A+
Sbjct: 14 QEEKNK---GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDC 70
Query: 1663 SKCLSIEPKNLEALMAISICF 1683
C+ ++ K ++ + + C
Sbjct: 71 DTCIRLDSKFIKGYIRKAACL 91
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 35.0 bits (79), Expect = 0.41, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
DC R A+ + P S+ + R+G +L++ N+ EAV Y AL+L P + NL I +
Sbjct: 68 DCER-AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK 126
Query: 1844 L 1844
L
Sbjct: 127 L 127
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 21 VTSHFVQDKGLRDEGFHRPYTHEENSFANAHPDQLLGEFWEHNLGNMQQAFRMDNLLAEM 80
+ +H + + G+H P+TH++N F N+ QLL E W N ++Q MD ++
Sbjct: 156 IGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLN-PKVEQMQLMDRATTKL 214
Query: 81 RDIEA-ASQRPKPQQSAPISLLARQDDA--REWANQF---LEAGSHFEHTPPET 128
+ + P + L A+ +D +++AN F E G+ H P +
Sbjct: 215 MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRNLHKAPAS 268
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 35.0 bits (79), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 52/114 (45%), Gaps = 7/114 (6%)
Query: 21 VTSHFVQDKGLRDEGFHRPYTHEENSFANAHPDQLLGEFWEHNLGNMQQAFRMDNLLAEM 80
+ +H + + G+H P+TH++N F N+ QLL E W N ++Q MD ++
Sbjct: 157 IGAHTCGECHIEFSGYHGPWTHDKNGFDNSFFTQLLDEDWVLN-PKVEQMQLMDRATTKL 215
Query: 81 RDIEA-ASQRPKPQQSAPISLLARQDDA--REWANQF---LEAGSHFEHTPPET 128
+ + P + L A+ +D +++AN F E G+ H P +
Sbjct: 216 MMLPSDVCLLLDPSYRKYVELYAKDNDRFNKDFANAFKKLTELGTRNLHKAPAS 269
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 34.7 bits (78), Expect = 0.53, Method: Composition-based stats.
Identities = 33/121 (27%), Positives = 50/121 (41%), Gaps = 11/121 (9%)
Query: 1778 EYDKAVDCFRSALQVRPDDS-RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
EY KA+D + AL + P + L NR A A+G E+A E A + P + +A
Sbjct: 26 EYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQH-EKAAEDAELATVVDPKYSKAWSR 84
Query: 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE--PRAVKEMSDSIWYSLRGFHP 1894
LG+ + A E + + + GLE R ++E + RG P
Sbjct: 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN-------RGAEP 137
Query: 1895 P 1895
P
Sbjct: 138 P 138
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 33.9 bits (76), Expect = 0.83, Method: Composition-based stats.
Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 1/125 (0%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
NP + E A G+E + D P+A+ K+ P++A + + +LA+ P+AI
Sbjct: 135 NPEKAE-EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAI 193
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719
A +K + +P + A + + AL+TL E N SA + D L
Sbjct: 194 ADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 253
Query: 1720 SKLTR 1724
K ++
Sbjct: 254 YKASQ 258
Score = 33.1 bits (74), Expect = 1.5, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832
F SD + AV + ++ P+D+R ++ A+LA EA+ + A++ P FVR
Sbjct: 150 FTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 208
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867
A + + A+E A + A ++G
Sbjct: 209 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 243
>pdb|2VQ2|A Chain A, Crystal Structure Of Pilw, Widely Conserved Type Iv Pilus
Biogenesis Factor
Length = 225
Score = 33.9 bits (76), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANG-NRPEEAVEAYHTALQ--LSPGFVRARYN 1836
DKA + FR AL ++PD + + N G L NRP E++ + AL P A N
Sbjct: 59 DKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLN 118
Query: 1837 LGITCVHLG 1845
GI G
Sbjct: 119 KGICSAKQG 127
>pdb|1THG|A Chain A, 1.8 Angstroms Refined Structure Of The Lipase From
Geotrichum Candidum
Length = 544
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 15/165 (9%)
Query: 813 ISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDR 872
+ W++Y ++ S+ +DR S+Y + L V T L + + + L+
Sbjct: 371 VKKWLQYIFYDASEASIDRVLSLYPQTLSVGSPFRTGILNALTPQFKRVAAILSDMLFQS 430
Query: 873 AVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS-ISQVTLWLGALTLSLE------- 924
++ A + ++TY+ L N+ L FH + I Q + +G L
Sbjct: 431 PRRVMLSATKDVNRWTYLSTHLHNLVPFLGTFHGNELIFQFNVNIGPANSYLRYFISFAN 490
Query: 925 ----GLGSNLQSWVRFL--ARDVGEC-CCGQVVSTVDSEVGGLSS 962
+G+NL W ++ +++ E V+ T D + G+S+
Sbjct: 491 HHDPNVGTNLLQWDQYTDEGKEMLEIHMTDNVMRTDDYRIEGISN 535
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 33.5 bits (75), Expect = 1.3, Method: Composition-based stats.
Identities = 28/113 (24%), Positives = 50/113 (44%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G+E + D P+A+ K+ P++A + + +LA+ P+AIA +K + +P
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724
+ A + + AL+TL E N SA + D L K ++
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 1/95 (1%)
Query: 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832
F SD + AV + ++ P+D+R ++ A+LA EA+ + A++ P FVR
Sbjct: 15 FTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR 73
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867
A + + A+E A + A ++G
Sbjct: 74 AYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108
>pdb|3ZHE|B Chain B, Structure Of The C. Elegans Smg5-smg7 Complex
pdb|3ZHE|D Chain D, Structure Of The C. Elegans Smg5-smg7 Complex
Length = 395
Score = 32.7 bits (73), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+G L + Y KA + + + ++ P D +WN+LG + G + E+V + AL +
Sbjct: 136 MGDLMRYKENYPKAQEYYEQSCRINPADGAVWNQLGLISSLGAKNLESVYFHTRALHATM 195
Query: 1829 GF 1830
F
Sbjct: 196 EF 197
>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|D Chain D, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|F Chain F, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|H Chain H, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|J Chain J, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
pdb|3HYM|L Chain L, Insights Into Anaphase Promoting Complex Tpr Subdomain
Assembly From A Cdc26-Apc6 Structure
Length = 330
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826
N LG + +Y +A+D R AL + P ++ ++ +G + E AV+ +HTAL L
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLXGNFENAVDYFHTALGL 299
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 31.6 bits (70), Expect = 5.0, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 4/89 (4%)
Query: 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWL----SLGI 1647
H+ FA ++ +E +R G A E+ K EP AE + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICH 303
Query: 1648 SLAENEQDPQAIAALSKCLSIEPKNLEAL 1676
+++E+ +AI S+ L +EP N+ AL
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQMEPDNVNAL 332
>pdb|3TGO|A Chain A, Crystal Structure Of The E. Coli Bamcd Complex
pdb|3TGO|B Chain B, Crystal Structure Of The E. Coli Bamcd Complex
Length = 229
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 1599 DNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE---PDNAEVWLSLGISLAENEQD 1655
DNP NE +A Q+KL+ G+ AI LEA + P + +V L L + +N
Sbjct: 13 DNP-PNEI--YATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL 69
Query: 1656 PQAIAALSKCLSIEPK--NLEALMAISICFTNEACLHDAL 1693
P A AA+ + + + P N++ +M + TN A AL
Sbjct: 70 PLAQAAIDRFIRLNPTHPNIDYVMYMR-GLTNMALDDSAL 108
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 30.8 bits (68), Expect = 8.3, Method: Composition-based stats.
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 10/87 (11%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G E ++GD P A+ + A K+ P +A+++ + + + A+ +C+ +EP
Sbjct: 23 GNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT 82
Query: 1672 NLEALMAISICFTNEACLHDALDTLKD 1698
++ +T +A AL+ +KD
Sbjct: 83 FIKG-------YTRKAA---ALEAMKD 99
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 30.4 bits (67), Expect = 9.8, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 4/89 (4%)
Query: 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWL----SLGI 1647
H+ FA ++ +E +R G A E+ K EP AE + +
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVXKTEPSIAEYTVRSKERICH 303
Query: 1648 SLAENEQDPQAIAALSKCLSIEPKNLEAL 1676
+++E+ +AI S+ L EP N+ AL
Sbjct: 304 CFSKDEKPVEAIRVCSEVLQXEPDNVNAL 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,508,934
Number of Sequences: 62578
Number of extensions: 2408580
Number of successful extensions: 5281
Number of sequences better than 100.0: 55
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 5026
Number of HSP's gapped (non-prelim): 247
length of query: 1956
length of database: 14,973,337
effective HSP length: 113
effective length of query: 1843
effective length of database: 7,902,023
effective search space: 14563428389
effective search space used: 14563428389
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)