Query psy8682
Match_columns 1956
No_of_seqs 1232 out of 4950
Neff 5.3
Searched_HMMs 46136
Date Sat Aug 17 01:05:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8682.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8682hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1125|consensus 100.0 3.4E-58 7.4E-63 553.4 19.6 381 1-411 1-569 (579)
2 KOG1125|consensus 100.0 4.5E-38 9.7E-43 380.0 28.2 505 1131-1900 48-559 (579)
3 TIGR02917 PEP_TPR_lipo putativ 100.0 2.7E-29 5.9E-34 327.2 65.9 324 1506-1892 574-897 (899)
4 KOG4626|consensus 100.0 4.1E-31 8.8E-36 316.6 21.7 273 1578-1878 231-503 (966)
5 KOG4626|consensus 100.0 1.1E-29 2.5E-34 304.4 23.8 295 1576-1899 195-489 (966)
6 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-25 5.1E-30 290.4 65.0 304 1579-1898 547-869 (899)
7 KOG2047|consensus 99.9 5.4E-25 1.2E-29 266.6 18.3 259 651-935 444-715 (835)
8 PRK09782 bacteriophage N4 rece 99.9 1.4E-20 3E-25 251.4 59.1 294 1576-1898 449-743 (987)
9 TIGR00990 3a0801s09 mitochondr 99.9 8E-23 1.7E-27 264.0 36.5 256 1620-1898 309-574 (615)
10 PRK11447 cellulose synthase su 99.9 4.3E-20 9.4E-25 253.9 63.8 273 1605-1894 461-739 (1157)
11 KOG1070|consensus 99.9 2E-24 4.3E-29 276.6 19.4 191 698-908 1503-1698(1710)
12 TIGR00990 3a0801s09 mitochondr 99.9 6E-22 1.3E-26 256.0 38.3 300 1573-1899 135-500 (615)
13 PRK15174 Vi polysaccharide exp 99.9 1.4E-21 3E-26 254.3 35.6 294 1577-1899 88-385 (656)
14 PRK15174 Vi polysaccharide exp 99.9 6.6E-21 1.4E-25 247.9 34.6 292 1579-1899 56-351 (656)
15 PRK11447 cellulose synthase su 99.9 1.8E-20 3.8E-25 257.7 36.7 302 1573-1899 311-704 (1157)
16 KOG1126|consensus 99.9 2E-20 4.2E-25 230.9 24.3 289 1581-1898 335-623 (638)
17 PRK11788 tetratricopeptide rep 99.8 8.3E-19 1.8E-23 212.7 33.1 271 1577-1871 47-322 (389)
18 PRK11788 tetratricopeptide rep 99.8 1.6E-18 3.6E-23 210.1 35.0 274 1605-1899 35-315 (389)
19 KOG0495|consensus 99.8 1.7E-19 3.7E-24 219.3 22.7 236 684-948 549-788 (913)
20 KOG1915|consensus 99.8 6.9E-20 1.5E-24 216.8 16.4 158 780-939 40-199 (677)
21 KOG0495|consensus 99.8 3.2E-16 6.9E-21 191.3 46.8 282 1590-1899 573-884 (913)
22 KOG1126|consensus 99.8 2E-18 4.4E-23 213.3 22.8 265 1573-1865 361-625 (638)
23 PRK10049 pgaA outer membrane p 99.8 3.8E-17 8.1E-22 216.6 36.5 118 1574-1698 58-175 (765)
24 KOG1915|consensus 99.8 1.3E-18 2.8E-23 206.2 19.8 215 714-948 58-278 (677)
25 PRK09782 bacteriophage N4 rece 99.8 4E-17 8.6E-22 218.6 32.0 271 1579-1881 490-760 (987)
26 KOG1155|consensus 99.8 4.3E-17 9.4E-22 194.1 26.5 266 1607-1895 264-536 (559)
27 PRK10049 pgaA outer membrane p 99.8 1.5E-16 3.3E-21 210.9 33.9 335 1506-1899 56-460 (765)
28 KOG0547|consensus 99.8 5.1E-17 1.1E-21 194.2 24.8 237 1605-1863 326-569 (606)
29 KOG0547|consensus 99.8 6.1E-17 1.3E-21 193.5 25.0 290 1605-1898 115-494 (606)
30 KOG1070|consensus 99.8 2.4E-17 5.2E-22 212.7 22.5 226 716-958 1445-1709(1710)
31 PF13429 TPR_15: Tetratricopep 99.8 3E-18 6.6E-23 200.6 12.0 265 1607-1896 10-278 (280)
32 PRK12370 invasion protein regu 99.7 3E-16 6.4E-21 201.2 29.8 257 1604-1884 257-526 (553)
33 KOG1155|consensus 99.7 1.1E-15 2.5E-20 182.2 28.8 280 1604-1890 163-491 (559)
34 TIGR02521 type_IV_pilW type IV 99.7 2.4E-15 5.3E-20 165.1 28.6 204 1602-1825 28-231 (234)
35 PRK11189 lipoprotein NlpI; Pro 99.7 1.1E-15 2.4E-20 181.7 27.7 236 1581-1845 42-285 (296)
36 KOG1173|consensus 99.7 6E-16 1.3E-20 188.4 25.6 273 1604-1899 243-522 (611)
37 KOG4162|consensus 99.7 2.9E-15 6.2E-20 187.4 31.3 367 1464-1866 366-789 (799)
38 KOG1173|consensus 99.7 8.1E-16 1.8E-20 187.3 25.3 273 1575-1875 254-533 (611)
39 KOG0624|consensus 99.7 1.5E-15 3.2E-20 175.4 25.6 286 1600-1898 34-373 (504)
40 PRK12370 invasion protein regu 99.7 1.6E-15 3.4E-20 194.6 28.8 251 1579-1860 275-535 (553)
41 TIGR02521 type_IV_pilW type IV 99.7 5.5E-15 1.2E-19 162.3 28.3 205 1638-1862 30-234 (234)
42 PRK11189 lipoprotein NlpI; Pro 99.7 3.5E-15 7.6E-20 177.3 26.6 230 1618-1874 39-280 (296)
43 KOG2002|consensus 99.7 7.5E-15 1.6E-19 186.8 29.8 351 1507-1877 172-576 (1018)
44 PF13429 TPR_15: Tetratricopep 99.7 1.5E-16 3.2E-21 186.4 13.6 261 1574-1860 17-277 (280)
45 KOG2002|consensus 99.7 2.6E-15 5.7E-20 190.9 25.4 277 1607-1894 166-480 (1018)
46 KOG1129|consensus 99.7 2.2E-15 4.7E-20 173.2 19.7 244 1610-1876 228-474 (478)
47 TIGR00540 hemY_coli hemY prote 99.7 2.6E-14 5.7E-19 177.0 30.5 294 1578-1894 97-398 (409)
48 KOG0548|consensus 99.7 2.2E-14 4.9E-19 174.7 27.3 293 1573-1876 44-471 (539)
49 KOG1840|consensus 99.6 3E-14 6.5E-19 178.4 28.1 253 1598-1862 193-481 (508)
50 KOG2076|consensus 99.6 7.1E-14 1.5E-18 177.4 30.6 303 1579-1893 153-510 (895)
51 KOG0548|consensus 99.6 1.5E-14 3.3E-19 176.2 23.7 316 1576-1899 13-459 (539)
52 KOG0624|consensus 99.6 3.2E-14 7E-19 164.5 23.7 266 1578-1871 51-381 (504)
53 PRK10747 putative protoheme IX 99.6 3.2E-13 6.8E-18 167.0 31.9 269 1607-1895 120-390 (398)
54 KOG2003|consensus 99.6 7.3E-14 1.6E-18 164.6 23.7 283 1507-1846 427-709 (840)
55 COG3063 PilF Tfp pilus assembl 99.6 2E-13 4.4E-18 153.0 25.2 209 1604-1832 34-242 (250)
56 KOG2003|consensus 99.6 1.4E-13 3E-18 162.3 22.3 275 1578-1879 432-708 (840)
57 TIGR00540 hemY_coli hemY prote 99.6 1.1E-12 2.3E-17 162.8 30.3 261 1576-1860 129-399 (409)
58 KOG1129|consensus 99.6 8.7E-14 1.9E-18 160.3 18.9 261 1614-1898 188-461 (478)
59 KOG0550|consensus 99.6 2.5E-14 5.5E-19 169.3 14.3 295 1597-1898 41-353 (486)
60 PLN02789 farnesyltranstransfer 99.5 1.2E-12 2.7E-17 157.3 28.5 208 1615-1844 47-268 (320)
61 KOG1840|consensus 99.5 2.6E-13 5.7E-18 170.0 23.5 246 1635-1892 195-476 (508)
62 KOG2076|consensus 99.5 6.5E-13 1.4E-17 168.9 27.0 346 1498-1886 141-547 (895)
63 PLN03081 pentatricopeptide (PP 99.5 1E-12 2.3E-17 172.9 30.3 270 1590-1885 275-548 (697)
64 PRK14574 hmsH outer membrane p 99.5 2.1E-12 4.5E-17 171.0 32.1 313 1575-1899 78-517 (822)
65 COG3063 PilF Tfp pilus assembl 99.5 1.2E-12 2.7E-17 146.8 25.3 208 1639-1866 35-242 (250)
66 PF05843 Suf: Suppressor of fo 99.5 4.6E-14 1E-18 166.8 14.7 129 767-908 2-134 (280)
67 PRK14574 hmsH outer membrane p 99.5 3.3E-12 7.2E-17 169.1 33.6 311 1578-1899 47-483 (822)
68 COG2956 Predicted N-acetylgluc 99.5 7.3E-12 1.6E-16 145.3 30.2 311 1608-1952 38-357 (389)
69 KOG2047|consensus 99.5 7.2E-13 1.6E-17 162.7 22.5 186 710-908 362-613 (835)
70 KOG0550|consensus 99.5 2.3E-13 4.9E-18 161.4 17.6 275 1573-1873 57-362 (486)
71 KOG1174|consensus 99.5 1.6E-12 3.5E-17 153.6 23.8 242 1604-1868 231-508 (564)
72 KOG1174|consensus 99.5 3.3E-12 7.2E-17 151.0 26.1 279 1612-1899 205-504 (564)
73 PLN02789 farnesyltranstransfer 99.5 1.1E-12 2.5E-17 157.6 22.1 220 1619-1877 34-267 (320)
74 PRK10747 putative protoheme IX 99.5 1.2E-11 2.7E-16 152.9 30.8 258 1577-1861 130-391 (398)
75 KOG4162|consensus 99.4 1.2E-11 2.6E-16 155.5 26.7 310 1579-1898 408-786 (799)
76 PLN03218 maturation of RBCL 1; 99.4 1.1E-10 2.4E-15 158.4 38.1 235 1605-1860 542-783 (1060)
77 PLN03218 maturation of RBCL 1; 99.4 1.1E-10 2.3E-15 158.6 37.6 322 1505-1885 443-774 (1060)
78 PLN03081 pentatricopeptide (PP 99.4 1.5E-11 3.2E-16 162.2 28.5 294 1504-1861 264-558 (697)
79 PLN03077 Protein ECB2; Provisi 99.4 2.5E-11 5.4E-16 163.5 30.8 314 1504-1885 359-711 (857)
80 PF05843 Suf: Suppressor of fo 99.4 1.1E-12 2.4E-17 155.2 13.3 130 815-946 3-139 (280)
81 TIGR03302 OM_YfiO outer membra 99.4 3.6E-11 7.8E-16 137.2 22.7 186 1604-1828 32-234 (235)
82 TIGR03302 OM_YfiO outer membra 99.4 4.7E-11 1E-15 136.2 23.3 194 1634-1863 28-235 (235)
83 KOG1127|consensus 99.4 6.6E-12 1.4E-16 159.8 16.6 343 1488-1885 486-904 (1238)
84 PRK15359 type III secretion sy 99.4 5.9E-12 1.3E-16 135.0 13.1 125 1746-1876 13-137 (144)
85 COG2956 Predicted N-acetylgluc 99.3 3.4E-10 7.3E-15 131.8 27.8 257 1582-1863 52-314 (389)
86 cd05804 StaR_like StaR_like; a 99.3 5.3E-10 1.1E-14 134.7 30.1 292 1580-1895 21-336 (355)
87 cd05804 StaR_like StaR_like; a 99.3 3.2E-10 7E-15 136.5 23.7 206 1604-1828 5-217 (355)
88 PLN03077 Protein ECB2; Provisi 99.3 1.2E-09 2.5E-14 147.6 31.1 290 1505-1860 430-720 (857)
89 PRK10370 formate-dependent nit 99.2 3.2E-10 6.9E-15 128.1 19.8 125 1739-1866 52-179 (198)
90 KOG1130|consensus 99.2 2.4E-11 5.3E-16 143.3 10.8 265 1608-1885 20-335 (639)
91 KOG1914|consensus 99.2 2.4E-10 5.3E-15 139.3 19.4 236 683-924 126-484 (656)
92 PRK15359 type III secretion sy 99.2 2.1E-10 4.6E-15 123.1 15.8 113 1729-1844 27-139 (144)
93 KOG0128|consensus 99.2 9.7E-11 2.1E-15 148.3 15.1 241 693-951 73-385 (881)
94 KOG1130|consensus 99.2 6.1E-11 1.3E-15 140.0 11.9 276 1575-1862 27-346 (639)
95 KOG1156|consensus 99.2 1.8E-09 3.8E-14 134.5 24.2 242 1607-1870 9-258 (700)
96 PF12569 NARP1: NMDA receptor- 99.1 2E-08 4.2E-13 127.9 30.5 278 1604-1885 3-325 (517)
97 KOG1128|consensus 99.1 8.9E-10 1.9E-14 138.5 17.9 223 1604-1863 397-619 (777)
98 PRK15179 Vi polysaccharide bio 99.1 2.1E-09 4.6E-14 140.7 21.6 145 1723-1870 83-227 (694)
99 KOG1127|consensus 99.1 2.2E-09 4.7E-14 137.5 20.7 222 1618-1859 471-699 (1238)
100 KOG1156|consensus 99.1 1.1E-08 2.4E-13 127.6 25.7 288 1579-1892 21-314 (700)
101 TIGR02552 LcrH_SycD type III s 99.1 9.2E-10 2E-14 114.8 14.2 117 1747-1866 4-120 (135)
102 KOG1914|consensus 99.1 1.8E-09 3.9E-14 131.9 18.6 190 719-926 10-251 (656)
103 COG3071 HemY Uncharacterized e 99.1 4.4E-08 9.6E-13 117.5 29.8 250 1604-1860 117-390 (400)
104 PRK14720 transcript cleavage f 99.1 5.2E-09 1.1E-13 138.2 22.9 226 1604-1868 30-314 (906)
105 PRK15179 Vi polysaccharide bio 99.1 3.2E-09 7E-14 139.0 20.7 152 1744-1899 70-221 (694)
106 KOG1258|consensus 99.1 1E-09 2.2E-14 136.7 15.3 113 796-908 62-178 (577)
107 PRK14720 transcript cleavage f 99.1 5E-09 1.1E-13 138.3 21.4 232 1633-1891 25-283 (906)
108 KOG1128|consensus 99.1 3.9E-09 8.5E-14 132.9 19.3 218 1638-1892 397-614 (777)
109 KOG0553|consensus 99.0 2E-09 4.4E-14 125.3 13.8 134 1724-1860 79-215 (304)
110 PRK10370 formate-dependent nit 99.0 1.3E-08 2.9E-13 115.1 20.0 122 1652-1795 52-176 (198)
111 PRK04841 transcriptional regul 99.0 7.2E-08 1.6E-12 130.7 29.9 307 1578-1898 422-763 (903)
112 PF04733 Coatomer_E: Coatomer 99.0 2.6E-09 5.6E-14 127.4 13.9 257 1575-1867 11-272 (290)
113 PF12569 NARP1: NMDA receptor- 99.0 1.4E-07 3.1E-12 120.1 30.2 277 1576-1863 15-337 (517)
114 COG5010 TadD Flp pilus assembl 99.0 2.3E-08 5E-13 114.9 20.7 176 1658-1856 52-227 (257)
115 KOG3060|consensus 99.0 7.4E-08 1.6E-12 110.0 23.3 186 1636-1843 49-237 (289)
116 COG5010 TadD Flp pilus assembl 99.0 4.2E-08 9.1E-13 112.9 21.2 177 1623-1822 51-227 (257)
117 KOG0553|consensus 99.0 2.4E-09 5.3E-14 124.7 11.4 119 1764-1882 82-200 (304)
118 KOG3060|consensus 99.0 1.3E-07 2.8E-12 108.1 24.3 183 1668-1872 47-232 (289)
119 KOG1258|consensus 98.9 7.2E-08 1.6E-12 120.6 22.8 200 711-925 61-344 (577)
120 PRK04841 transcriptional regul 98.9 2.2E-07 4.8E-12 126.0 29.0 276 1574-1865 461-765 (903)
121 TIGR02552 LcrH_SycD type III s 98.9 4E-08 8.6E-13 102.6 15.9 107 1725-1834 16-122 (135)
122 PF04733 Coatomer_E: Coatomer 98.9 1.1E-08 2.3E-13 122.2 11.9 258 1613-1899 9-269 (290)
123 PRK15363 pathogenicity island 98.8 2.7E-08 5.9E-13 108.0 13.4 101 1763-1863 35-135 (157)
124 PLN03088 SGT1, suppressor of 98.8 2.4E-08 5.2E-13 122.4 14.2 113 1729-1844 5-117 (356)
125 COG3071 HemY Uncharacterized e 98.8 2.3E-06 5E-11 103.2 29.8 265 1605-1893 84-388 (400)
126 PLN03088 SGT1, suppressor of 98.8 8E-08 1.7E-12 117.9 16.7 114 1766-1879 5-118 (356)
127 KOG2376|consensus 98.8 8.8E-07 1.9E-11 110.2 25.4 309 1557-1890 13-400 (652)
128 COG0457 NrfG FOG: TPR repeat [ 98.8 8.9E-06 1.9E-10 85.2 29.7 226 1618-1863 36-268 (291)
129 KOG3785|consensus 98.8 1.8E-07 3.9E-12 109.8 18.0 242 1607-1881 59-332 (557)
130 PRK10866 outer membrane biogen 98.8 6E-07 1.3E-11 104.8 22.1 180 1603-1787 30-236 (243)
131 KOG2376|consensus 98.8 5.9E-07 1.3E-11 111.7 22.9 230 1606-1865 13-258 (652)
132 COG0457 NrfG FOG: TPR repeat [ 98.8 9.1E-06 2E-10 85.1 28.4 206 1605-1829 59-268 (291)
133 PF13525 YfiO: Outer membrane 98.7 3.6E-07 7.8E-12 103.7 18.8 176 1603-1782 3-197 (203)
134 KOG3785|consensus 98.7 7.4E-07 1.6E-11 104.8 21.0 122 1578-1709 70-217 (557)
135 PRK15363 pathogenicity island 98.7 2.1E-07 4.6E-12 101.1 15.3 102 1723-1827 32-133 (157)
136 cd00189 TPR Tetratricopeptide 98.7 1.2E-07 2.5E-12 87.9 11.5 99 1765-1863 2-100 (100)
137 TIGR02795 tol_pal_ybgF tol-pal 98.7 2E-07 4.3E-12 94.1 14.1 105 1763-1867 2-112 (119)
138 KOG2396|consensus 98.7 1.4E-07 3E-12 115.4 14.9 145 783-928 22-190 (568)
139 COG4783 Putative Zn-dependent 98.7 2.3E-06 5.1E-11 105.3 25.3 153 1636-1827 303-455 (484)
140 KOG2396|consensus 98.7 2.9E-07 6.2E-12 112.8 16.2 144 750-895 35-188 (568)
141 PF14938 SNAP: Soluble NSF att 98.7 3.7E-07 8E-12 108.5 17.0 204 1645-1862 41-268 (282)
142 COG4783 Putative Zn-dependent 98.6 2.2E-06 4.7E-11 105.6 22.7 153 1670-1861 303-455 (484)
143 KOG4340|consensus 98.6 1.2E-06 2.6E-11 101.5 19.1 217 1615-1855 20-265 (459)
144 PRK10866 outer membrane biogen 98.6 4E-06 8.6E-11 98.1 23.4 183 1638-1856 31-237 (243)
145 TIGR02795 tol_pal_ybgF tol-pal 98.6 6.5E-07 1.4E-11 90.3 14.6 109 1727-1835 3-114 (119)
146 COG5107 RNA14 Pre-mRNA 3'-end 98.6 2E-06 4.3E-11 103.8 20.6 52 720-774 33-84 (660)
147 PF13525 YfiO: Outer membrane 98.6 1.7E-06 3.7E-11 98.2 19.1 171 1639-1851 5-198 (203)
148 cd00189 TPR Tetratricopeptide 98.6 5.4E-07 1.2E-11 83.4 12.1 96 1607-1702 2-97 (100)
149 CHL00033 ycf3 photosystem I as 98.6 4.6E-07 1E-11 99.2 12.9 122 1742-1864 15-153 (168)
150 PRK02603 photosystem I assembl 98.6 6.7E-07 1.4E-11 98.5 13.9 102 1763-1864 35-153 (172)
151 COG4785 NlpI Lipoprotein NlpI, 98.6 5.1E-06 1.1E-10 93.3 20.2 197 1604-1828 64-268 (297)
152 PRK02603 photosystem I assembl 98.5 1.9E-06 4.1E-11 95.0 16.8 117 1604-1759 34-153 (172)
153 PF13414 TPR_11: TPR repeat; P 98.5 3.3E-07 7E-12 85.5 8.7 67 1796-1862 2-69 (69)
154 COG5191 Uncharacterized conser 98.5 4E-07 8.7E-12 105.8 10.5 144 784-928 23-192 (435)
155 KOG4340|consensus 98.5 2E-06 4.4E-11 99.6 15.5 267 1579-1876 24-321 (459)
156 KOG1941|consensus 98.5 3.1E-06 6.8E-11 100.2 17.2 243 1607-1863 8-278 (518)
157 CHL00033 ycf3 photosystem I as 98.5 2.4E-06 5.2E-11 93.6 15.5 108 1724-1831 33-154 (168)
158 PF09976 TPR_21: Tetratricopep 98.5 3.6E-06 7.7E-11 90.4 16.4 124 1734-1858 19-145 (145)
159 PRK10153 DNA-binding transcrip 98.5 2.8E-06 6E-11 109.0 18.0 133 1730-1866 343-488 (517)
160 KOG4648|consensus 98.5 8.3E-08 1.8E-12 112.2 3.7 234 1608-1869 100-339 (536)
161 KOG1941|consensus 98.4 8.3E-06 1.8E-10 96.7 19.5 280 1573-1863 51-363 (518)
162 COG4235 Cytochrome c biogenesi 98.4 3.4E-06 7.3E-11 99.5 16.2 123 1741-1866 137-262 (287)
163 PF14938 SNAP: Soluble NSF att 98.4 2.9E-06 6.3E-11 100.9 16.0 185 1654-1866 30-231 (282)
164 KOG0543|consensus 98.4 3.3E-06 7.2E-11 102.5 14.9 135 1729-1863 211-358 (397)
165 PF13414 TPR_11: TPR repeat; P 98.4 9.3E-07 2E-11 82.4 8.1 67 1604-1670 2-69 (69)
166 KOG0543|consensus 98.4 2.2E-06 4.8E-11 104.0 12.6 134 1765-1898 210-358 (397)
167 PF08424 NRDE-2: NRDE-2, neces 98.4 1.5E-05 3.2E-10 96.9 19.5 186 754-940 7-229 (321)
168 PF09976 TPR_21: Tetratricopep 98.3 1E-05 2.2E-10 86.9 15.6 123 1685-1824 23-145 (145)
169 PF12895 Apc3: Anaphase-promot 98.3 1.2E-06 2.6E-11 85.4 7.7 81 1776-1857 2-84 (84)
170 KOG3081|consensus 98.3 6.8E-05 1.5E-09 87.0 22.4 253 1575-1866 18-277 (299)
171 PF13432 TPR_16: Tetratricopep 98.3 1.8E-06 3.9E-11 79.8 8.1 64 1802-1865 2-65 (65)
172 PF13432 TPR_16: Tetratricopep 98.3 2.5E-06 5.5E-11 78.8 7.8 65 1609-1673 1-65 (65)
173 PF12895 Apc3: Anaphase-promot 98.2 2.2E-06 4.8E-11 83.5 7.3 81 1618-1699 2-84 (84)
174 PRK10153 DNA-binding transcrip 98.2 2.5E-05 5.4E-10 100.4 18.3 147 1604-1797 338-487 (517)
175 COG4235 Cytochrome c biogenesi 98.2 7.8E-06 1.7E-10 96.5 12.5 133 1777-1910 136-271 (287)
176 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 1.9E-05 4.2E-10 98.0 16.0 121 1732-1858 175-295 (395)
177 PRK10803 tol-pal system protei 98.2 1.8E-05 3.9E-10 93.6 14.9 102 1764-1865 143-251 (263)
178 PRK10803 tol-pal system protei 98.2 2.8E-05 6.1E-10 92.0 16.5 108 1726-1833 142-253 (263)
179 PRK11906 transcriptional regul 98.2 2E-05 4.4E-10 97.7 15.3 124 1741-1867 273-408 (458)
180 PRK11906 transcriptional regul 98.2 6.5E-05 1.4E-09 93.4 19.1 161 1607-1788 257-432 (458)
181 COG5191 Uncharacterized conser 98.2 6.9E-06 1.5E-10 95.9 10.0 101 801-906 95-196 (435)
182 KOG3081|consensus 98.2 0.00018 3.8E-09 83.7 21.2 257 1612-1899 15-275 (299)
183 PF08424 NRDE-2: NRDE-2, neces 98.1 2.5E-05 5.3E-10 95.0 15.0 151 800-953 6-194 (321)
184 PRK15331 chaperone protein Sic 98.1 8.9E-06 1.9E-10 89.2 9.6 97 1763-1859 37-133 (165)
185 COG5107 RNA14 Pre-mRNA 3'-end 98.1 3E-05 6.4E-10 94.1 14.4 155 756-924 32-208 (660)
186 PF12688 TPR_5: Tetratrico pep 98.1 3.8E-05 8.3E-10 80.9 12.9 98 1728-1825 3-103 (120)
187 PRK15331 chaperone protein Sic 98.1 2.8E-05 6.1E-10 85.3 12.0 99 1604-1702 36-134 (165)
188 COG4105 ComL DNA uptake lipopr 98.0 0.0004 8.7E-09 81.0 21.0 179 1604-1787 33-228 (254)
189 KOG4648|consensus 98.0 1.2E-05 2.6E-10 94.8 8.6 208 1642-1880 100-316 (536)
190 KOG3617|consensus 98.0 0.00032 7E-09 89.7 21.0 212 1573-1823 775-993 (1416)
191 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00011 2.4E-09 91.3 16.7 122 1678-1824 174-295 (395)
192 COG3898 Uncharacterized membra 98.0 0.0044 9.6E-08 75.1 28.6 271 1605-1898 120-395 (531)
193 COG4105 ComL DNA uptake lipopr 98.0 0.00094 2E-08 78.0 22.4 189 1638-1863 33-236 (254)
194 KOG4234|consensus 97.9 9.4E-05 2E-09 82.6 12.5 101 1733-1833 102-204 (271)
195 PF12688 TPR_5: Tetratrico pep 97.9 0.00016 3.5E-09 76.2 13.5 96 1764-1859 2-103 (120)
196 COG4785 NlpI Lipoprotein NlpI, 97.9 0.00032 6.9E-09 79.3 16.3 197 1639-1862 65-268 (297)
197 PF14559 TPR_19: Tetratricopep 97.9 3E-05 6.5E-10 72.0 7.1 67 1615-1681 1-67 (68)
198 COG1729 Uncharacterized protei 97.9 0.00019 4.1E-09 84.2 15.1 107 1729-1835 144-253 (262)
199 KOG4234|consensus 97.9 6E-05 1.3E-09 84.1 10.4 107 1766-1872 98-209 (271)
200 PF14559 TPR_19: Tetratricopep 97.9 4.2E-05 9E-10 71.0 7.5 64 1775-1838 3-66 (68)
201 PF13371 TPR_9: Tetratricopept 97.9 3.6E-05 7.7E-10 72.5 7.0 63 1805-1867 3-65 (73)
202 PF13371 TPR_9: Tetratricopept 97.8 6.6E-05 1.4E-09 70.7 8.6 69 1770-1838 2-70 (73)
203 PLN03098 LPA1 LOW PSII ACCUMUL 97.8 7.5E-05 1.6E-09 92.8 11.0 64 1763-1826 75-141 (453)
204 KOG2053|consensus 97.8 0.0075 1.6E-07 79.3 28.6 117 1579-1702 23-139 (932)
205 KOG0128|consensus 97.8 0.00026 5.7E-09 91.6 15.5 233 684-921 182-422 (881)
206 KOG2796|consensus 97.8 0.011 2.4E-07 68.9 26.6 139 1725-1865 176-320 (366)
207 COG4700 Uncharacterized protei 97.8 0.0016 3.5E-08 72.5 18.8 154 1615-1790 66-220 (251)
208 KOG2053|consensus 97.7 0.0045 9.7E-08 81.3 25.3 228 1615-1864 19-259 (932)
209 KOG3617|consensus 97.7 0.0013 2.9E-08 84.3 18.8 211 1607-1859 759-995 (1416)
210 COG4700 Uncharacterized protei 97.7 0.00083 1.8E-08 74.7 14.6 114 1766-1880 92-208 (251)
211 PF13512 TPR_18: Tetratricopep 97.7 0.00072 1.6E-08 73.1 13.8 87 1726-1812 10-99 (142)
212 COG1729 Uncharacterized protei 97.6 0.00089 1.9E-08 78.8 15.0 112 1676-1803 144-255 (262)
213 PLN03098 LPA1 LOW PSII ACCUMUL 97.6 0.00036 7.8E-09 86.9 12.1 68 1722-1792 71-141 (453)
214 PF08311 Mad3_BUB1_I: Mad3/BUB 97.6 0.00034 7.4E-09 74.4 9.7 107 796-908 2-126 (126)
215 KOG1586|consensus 97.5 0.0031 6.7E-08 72.4 17.4 133 1646-1792 41-183 (288)
216 PF13424 TPR_12: Tetratricopep 97.5 0.0001 2.2E-09 70.5 5.0 63 1798-1860 6-75 (78)
217 PF13512 TPR_18: Tetratricopep 97.5 0.0019 4E-08 70.0 14.2 109 1672-1796 9-132 (142)
218 PF04184 ST7: ST7 protein; In 97.5 0.005 1.1E-07 77.1 19.6 227 1610-1870 173-424 (539)
219 COG3898 Uncharacterized membra 97.4 0.037 8E-07 67.6 25.6 217 1615-1860 164-392 (531)
220 KOG1586|consensus 97.4 0.0046 9.9E-08 71.1 17.1 190 1649-1869 24-233 (288)
221 PF04184 ST7: ST7 protein; In 97.4 0.0057 1.2E-07 76.7 19.3 192 1645-1869 174-384 (539)
222 KOG4555|consensus 97.4 0.0032 7E-08 66.7 14.4 99 1729-1830 46-148 (175)
223 KOG1585|consensus 97.4 0.0057 1.2E-07 70.7 17.4 204 1604-1856 30-252 (308)
224 KOG2796|consensus 97.4 0.017 3.7E-07 67.4 20.9 150 1656-1830 166-319 (366)
225 KOG4555|consensus 97.4 0.0021 4.5E-08 68.1 12.4 100 1766-1865 46-149 (175)
226 PF13424 TPR_12: Tetratricopep 97.4 0.0004 8.8E-09 66.4 6.8 73 1671-1755 3-75 (78)
227 KOG2471|consensus 97.3 0.0062 1.3E-07 75.4 17.6 159 1607-1774 208-380 (696)
228 PF06552 TOM20_plant: Plant sp 97.3 0.00085 1.9E-08 74.7 8.7 104 1742-1871 7-120 (186)
229 KOG3616|consensus 97.3 0.022 4.9E-07 72.6 21.7 35 1829-1863 993-1027(1636)
230 KOG1585|consensus 97.3 0.022 4.7E-07 66.1 19.8 182 1610-1821 56-251 (308)
231 KOG4642|consensus 97.1 0.0011 2.4E-08 76.2 7.2 92 1731-1825 15-106 (284)
232 PF06552 TOM20_plant: Plant sp 97.1 0.0031 6.8E-08 70.4 10.5 81 1722-1832 21-115 (186)
233 PF02259 FAT: FAT domain; Int 97.1 0.19 4.1E-06 61.0 26.9 121 1723-1843 143-304 (352)
234 KOG4642|consensus 96.9 0.0021 4.5E-08 74.0 7.8 99 1605-1703 10-108 (284)
235 KOG2610|consensus 96.9 0.043 9.4E-07 65.8 18.2 166 1641-1824 105-274 (491)
236 KOG1550|consensus 96.8 0.11 2.4E-06 68.2 23.3 240 1604-1876 243-517 (552)
237 smart00386 HAT HAT (Half-A-TPR 96.7 0.0015 3.3E-08 51.6 3.7 30 828-857 2-31 (33)
238 KOG2471|consensus 96.7 0.0076 1.7E-07 74.6 11.1 220 1606-1844 101-382 (696)
239 PF13281 DUF4071: Domain of un 96.7 0.1 2.3E-06 64.9 20.5 174 1604-1797 140-339 (374)
240 smart00777 Mad3_BUB1_I Mad3/BU 96.7 0.013 2.7E-07 62.6 10.8 105 797-907 3-125 (125)
241 KOG0545|consensus 96.7 0.0086 1.9E-07 69.2 10.1 66 1798-1863 231-296 (329)
242 KOG2610|consensus 96.7 0.06 1.3E-06 64.7 17.2 169 1678-1865 108-283 (491)
243 PF02184 HAT: HAT (Half-A-TPR) 96.6 0.002 4.4E-08 52.6 3.6 30 862-892 2-31 (32)
244 KOG0985|consensus 96.6 0.18 3.8E-06 67.2 21.8 234 1590-1876 1091-1324(1666)
245 KOG3616|consensus 96.6 0.12 2.7E-06 66.2 19.9 58 1642-1699 664-732 (1636)
246 smart00386 HAT HAT (Half-A-TPR 96.5 0.0034 7.4E-08 49.6 4.4 32 861-892 1-32 (33)
247 PF13428 TPR_14: Tetratricopep 96.5 0.0047 1E-07 53.6 5.5 42 732-773 1-42 (44)
248 KOG0376|consensus 96.5 0.0035 7.6E-08 78.2 6.3 110 1730-1842 8-117 (476)
249 KOG0551|consensus 96.5 0.018 4E-07 69.1 11.8 106 1724-1829 79-185 (390)
250 KOG0376|consensus 96.5 0.0024 5.2E-08 79.6 4.7 108 1766-1873 7-114 (476)
251 KOG0545|consensus 96.5 0.032 6.9E-07 64.7 13.0 102 1604-1709 177-296 (329)
252 PF13428 TPR_14: Tetratricopep 96.5 0.0047 1E-07 53.6 5.1 27 1839-1865 9-35 (44)
253 PF02259 FAT: FAT domain; Int 96.5 0.31 6.6E-06 59.2 22.5 115 1763-1877 146-304 (352)
254 KOG1550|consensus 96.5 0.2 4.4E-06 65.8 22.3 227 1620-1878 227-484 (552)
255 KOG4507|consensus 96.5 0.076 1.6E-06 67.3 17.0 92 1611-1702 219-312 (886)
256 PF10300 DUF3808: Protein of u 96.4 0.41 8.8E-06 61.8 24.4 165 1683-1862 198-378 (468)
257 PF08311 Mad3_BUB1_I: Mad3/BUB 96.4 0.011 2.3E-07 63.2 8.6 111 749-874 2-126 (126)
258 PF10300 DUF3808: Protein of u 96.3 0.099 2.2E-06 67.3 17.7 167 1609-1792 192-376 (468)
259 PF10345 Cohesin_load: Cohesin 96.2 1.6 3.5E-05 58.2 29.0 298 1577-1889 29-428 (608)
260 KOG0551|consensus 96.2 0.097 2.1E-06 63.2 15.5 105 1598-1702 74-182 (390)
261 PF13281 DUF4071: Domain of un 96.2 0.69 1.5E-05 57.8 23.3 177 1672-1869 140-340 (374)
262 COG2909 MalT ATP-dependent tra 96.1 0.67 1.5E-05 62.2 23.7 249 1597-1863 372-650 (894)
263 COG0790 FOG: TPR repeat, SEL1 96.1 1.6 3.5E-05 52.2 25.4 168 1614-1811 50-236 (292)
264 PF02184 HAT: HAT (Half-A-TPR) 96.1 0.0049 1.1E-07 50.5 2.7 28 796-824 4-31 (32)
265 PF03704 BTAD: Bacterial trans 96.0 0.11 2.3E-06 55.8 13.8 96 1607-1702 8-125 (146)
266 PF03704 BTAD: Bacterial trans 96.0 0.1 2.2E-06 56.0 13.6 115 1730-1860 10-125 (146)
267 COG3118 Thioredoxin domain-con 95.9 0.11 2.4E-06 62.2 14.4 132 1730-1865 138-270 (304)
268 COG3118 Thioredoxin domain-con 95.9 0.25 5.3E-06 59.4 16.6 157 1427-1665 36-194 (304)
269 COG0790 FOG: TPR repeat, SEL1 95.8 1.2 2.7E-05 53.2 23.0 185 1649-1863 51-269 (292)
270 COG2909 MalT ATP-dependent tra 95.8 1.1 2.4E-05 60.2 23.7 235 1606-1856 416-684 (894)
271 PF13431 TPR_17: Tetratricopep 95.8 0.0089 1.9E-07 49.5 3.2 32 1820-1851 2-33 (34)
272 PF00515 TPR_1: Tetratricopept 95.7 0.016 3.5E-07 47.0 4.4 32 1832-1863 2-33 (34)
273 KOG2300|consensus 95.7 0.82 1.8E-05 57.7 20.6 196 1642-1856 326-552 (629)
274 PF07719 TPR_2: Tetratricopept 95.7 0.021 4.6E-07 45.9 5.1 33 1832-1864 2-34 (34)
275 PF13431 TPR_17: Tetratricopep 95.6 0.011 2.3E-07 49.0 3.2 32 1786-1817 2-33 (34)
276 PF00515 TPR_1: Tetratricopept 95.5 0.022 4.8E-07 46.2 4.7 32 1798-1829 2-33 (34)
277 PF07719 TPR_2: Tetratricopept 95.1 0.045 9.8E-07 44.0 5.1 31 1607-1637 3-33 (34)
278 KOG1308|consensus 95.0 0.027 5.9E-07 68.1 5.2 94 1733-1829 121-214 (377)
279 PF08631 SPO22: Meiosis protei 95.0 5.8 0.00013 47.9 24.9 222 1615-1858 3-273 (278)
280 COG2976 Uncharacterized protei 95.0 0.56 1.2E-05 53.6 15.1 99 1729-1828 92-190 (207)
281 PF04910 Tcf25: Transcriptiona 94.9 1.6 3.5E-05 54.7 20.5 174 1632-1831 33-227 (360)
282 KOG2300|consensus 94.9 0.82 1.8E-05 57.7 17.4 204 1652-1867 288-521 (629)
283 KOG1308|consensus 94.9 0.013 2.7E-07 70.8 2.1 93 1771-1863 122-214 (377)
284 COG2976 Uncharacterized protei 94.8 0.48 1E-05 54.1 13.8 120 1744-1865 70-193 (207)
285 KOG0985|consensus 94.6 2.5 5.4E-05 57.2 21.3 183 1617-1851 1087-1269(1666)
286 KOG0890|consensus 94.1 11 0.00024 55.7 27.3 288 1608-1906 1452-1796(2382)
287 KOG2041|consensus 93.9 3.5 7.6E-05 54.0 19.9 134 1590-1752 679-822 (1189)
288 PF07079 DUF1347: Protein of u 93.9 26 0.00056 44.9 28.9 142 1607-1754 8-156 (549)
289 PF13181 TPR_8: Tetratricopept 93.9 0.1 2.2E-06 42.1 4.7 32 1832-1863 2-33 (34)
290 PF04910 Tcf25: Transcriptiona 93.9 1.8 3.9E-05 54.2 17.6 156 1589-1759 25-226 (360)
291 PF08631 SPO22: Meiosis protei 93.8 20 0.00043 43.3 26.9 121 1580-1702 8-150 (278)
292 smart00777 Mad3_BUB1_I Mad3/BU 93.6 0.38 8.2E-06 51.6 9.6 108 750-872 3-124 (125)
293 KOG0530|consensus 93.3 5 0.00011 47.9 18.6 202 1618-1841 56-269 (318)
294 KOG4507|consensus 92.9 0.24 5.1E-06 63.1 7.7 109 1732-1842 612-721 (886)
295 PF07079 DUF1347: Protein of u 92.7 38 0.00083 43.5 28.4 53 1838-1892 469-521 (549)
296 KOG3824|consensus 92.6 0.28 6.2E-06 58.5 7.4 79 1604-1682 115-193 (472)
297 PF13181 TPR_8: Tetratricopept 92.6 0.18 3.8E-06 40.8 4.1 30 1799-1828 3-32 (34)
298 KOG1464|consensus 92.5 2 4.2E-05 51.0 13.8 66 1601-1667 24-93 (440)
299 KOG3824|consensus 91.8 0.47 1E-05 56.8 7.8 69 1771-1839 124-192 (472)
300 KOG0890|consensus 91.7 20 0.00044 53.3 24.5 132 1742-1875 1645-1799(2382)
301 KOG0530|consensus 91.5 4.5 9.7E-05 48.3 15.2 135 1734-1871 51-187 (318)
302 PRK10941 hypothetical protein; 91.5 0.75 1.6E-05 55.4 9.4 66 1801-1866 185-250 (269)
303 KOG2041|consensus 91.2 2.8 6.2E-05 54.7 14.2 136 1620-1789 678-822 (1189)
304 PF13176 TPR_7: Tetratricopept 91.0 0.24 5.3E-06 41.3 3.4 27 1834-1860 2-28 (36)
305 PF13174 TPR_6: Tetratricopept 91.0 0.35 7.6E-06 38.5 4.2 31 1833-1863 2-32 (33)
306 KOG1464|consensus 90.7 8.9 0.00019 45.8 16.5 51 1581-1633 43-93 (440)
307 PRK10941 hypothetical protein; 90.5 2 4.4E-05 51.8 11.7 74 1763-1836 181-254 (269)
308 PF04781 DUF627: Protein of un 90.5 1.7 3.6E-05 45.8 9.5 92 1611-1702 2-107 (111)
309 PF10345 Cohesin_load: Cohesin 90.2 29 0.00064 46.6 23.4 241 1607-1860 303-606 (608)
310 PF13174 TPR_6: Tetratricopept 90.1 0.47 1E-05 37.7 4.2 33 733-765 1-33 (33)
311 KOG1463|consensus 89.5 18 0.00039 44.8 18.2 254 1606-1875 49-328 (411)
312 PRK11619 lytic murein transgly 89.4 99 0.0022 42.1 27.8 123 1736-1859 251-374 (644)
313 KOG3783|consensus 89.3 42 0.00091 44.0 22.2 220 1622-1863 250-523 (546)
314 KOG1839|consensus 89.3 3.1 6.8E-05 58.2 13.3 174 1642-1826 935-1128(1236)
315 COG4649 Uncharacterized protei 89.1 9 0.0002 43.5 14.3 138 1733-1872 65-207 (221)
316 KOG1538|consensus 89.0 6.3 0.00014 51.4 14.6 218 1606-1859 586-832 (1081)
317 PF12968 DUF3856: Domain of Un 89.0 4.8 0.00011 43.0 11.5 110 1675-1791 9-128 (144)
318 PF13176 TPR_7: Tetratricopept 88.9 0.63 1.4E-05 38.8 4.2 28 1799-1826 1-28 (36)
319 PF14561 TPR_20: Tetratricopep 88.7 2.9 6.2E-05 42.5 9.5 64 1783-1846 8-73 (90)
320 PF12968 DUF3856: Domain of Un 88.2 9.1 0.0002 41.0 12.8 28 1833-1860 102-129 (144)
321 KOG1538|consensus 88.0 15 0.00033 48.1 17.0 185 1609-1824 636-831 (1081)
322 smart00028 TPR Tetratricopepti 88.0 0.67 1.5E-05 34.5 3.6 31 1833-1863 3-33 (34)
323 PF14561 TPR_20: Tetratricopep 88.0 3.1 6.7E-05 42.2 9.2 74 1624-1697 7-82 (90)
324 PF09613 HrpB1_HrpK: Bacterial 87.9 5.8 0.00013 44.4 12.0 85 1726-1813 10-94 (160)
325 PF09986 DUF2225: Uncharacteri 87.7 5.8 0.00012 46.4 12.5 70 1724-1793 116-195 (214)
326 KOG1839|consensus 87.6 3.2 6.9E-05 58.1 11.8 178 1604-1792 931-1128(1236)
327 PF09613 HrpB1_HrpK: Bacterial 87.6 5.5 0.00012 44.7 11.5 87 1604-1690 9-95 (160)
328 PRK15180 Vi polysaccharide bio 87.4 2.4 5.2E-05 53.4 9.5 132 1736-1870 299-430 (831)
329 COG5159 RPN6 26S proteasome re 87.4 21 0.00046 43.2 16.6 172 1678-1863 130-317 (421)
330 PRK13184 pknD serine/threonine 87.3 76 0.0017 44.8 24.5 114 1498-1641 474-588 (932)
331 COG4649 Uncharacterized protei 86.9 18 0.00039 41.2 14.9 96 1730-1825 98-195 (221)
332 PF04781 DUF627: Protein of un 86.7 3.2 6.9E-05 43.8 8.6 106 1732-1860 2-107 (111)
333 COG3914 Spy Predicted O-linked 86.4 7.2 0.00016 50.9 13.2 127 1740-1869 45-180 (620)
334 smart00028 TPR Tetratricopepti 85.8 1.2 2.5E-05 33.2 3.9 32 733-764 2-33 (34)
335 KOG3807|consensus 85.7 35 0.00076 42.0 17.4 142 1610-1782 189-330 (556)
336 PF14853 Fis1_TPR_C: Fis1 C-te 85.3 2.7 5.9E-05 38.7 6.5 35 1641-1675 3-37 (53)
337 PF14853 Fis1_TPR_C: Fis1 C-te 84.9 2.9 6.4E-05 38.5 6.5 43 1606-1648 2-44 (53)
338 PF10602 RPN7: 26S proteasome 84.8 7.2 0.00016 44.2 11.1 102 1674-1791 37-141 (177)
339 KOG1310|consensus 84.3 2.3 4.9E-05 54.3 7.3 96 1730-1828 378-476 (758)
340 PF11846 DUF3366: Domain of un 84.1 2.4 5.1E-05 48.2 7.0 113 649-770 70-183 (193)
341 PF10602 RPN7: 26S proteasome 83.7 6.7 0.00015 44.5 10.3 67 1726-1792 36-102 (177)
342 KOG1310|consensus 83.3 3.3 7.2E-05 53.0 8.1 90 1776-1865 387-479 (758)
343 KOG4814|consensus 82.9 60 0.0013 43.2 18.8 96 1765-1860 356-457 (872)
344 PRK15180 Vi polysaccharide bio 82.4 7.2 0.00016 49.4 10.3 127 1614-1759 298-424 (831)
345 COG4976 Predicted methyltransf 82.3 1.7 3.7E-05 50.8 4.8 58 1773-1830 5-62 (287)
346 KOG3364|consensus 81.8 7.1 0.00015 42.7 8.8 75 1604-1678 31-110 (149)
347 KOG3783|consensus 81.5 72 0.0016 41.9 18.8 230 1594-1829 260-523 (546)
348 KOG3807|consensus 81.2 76 0.0017 39.3 17.8 194 1644-1870 189-401 (556)
349 TIGR02561 HrpB1_HrpK type III 81.1 36 0.00079 38.0 14.1 83 1728-1813 12-94 (153)
350 PF09986 DUF2225: Uncharacteri 80.7 15 0.00033 43.0 12.0 88 1580-1669 92-195 (214)
351 PF04053 Coatomer_WDAD: Coatom 80.6 26 0.00056 45.5 15.0 130 1613-1789 269-399 (443)
352 KOG4814|consensus 80.3 10 0.00022 49.8 10.9 98 1605-1702 354-457 (872)
353 COG3914 Spy Predicted O-linked 79.9 46 0.00099 44.0 16.4 127 1658-1806 50-185 (620)
354 COG4976 Predicted methyltransf 79.5 2.4 5.2E-05 49.7 4.8 61 1613-1673 3-63 (287)
355 TIGR02561 HrpB1_HrpK type III 78.8 16 0.00034 40.7 10.5 83 1766-1848 13-95 (153)
356 PF13374 TPR_10: Tetratricopep 76.9 4.4 9.6E-05 33.7 4.5 26 1800-1825 5-30 (42)
357 PF13374 TPR_10: Tetratricopep 76.8 4.8 0.0001 33.4 4.7 33 1831-1863 2-34 (42)
358 KOG2422|consensus 76.5 58 0.0013 43.0 15.8 170 1686-1863 251-451 (665)
359 COG1747 Uncharacterized N-term 74.2 3E+02 0.0065 36.4 22.1 202 1607-1829 68-291 (711)
360 COG5159 RPN6 26S proteasome re 73.8 73 0.0016 38.9 14.7 201 1609-1827 7-236 (421)
361 KOG3364|consensus 72.6 17 0.00037 39.9 8.5 72 1728-1801 34-109 (149)
362 PF15015 NYD-SP12_N: Spermatog 72.2 13 0.00028 47.0 8.4 139 1725-1871 175-331 (569)
363 KOG0529|consensus 71.6 60 0.0013 41.4 14.0 131 1738-1871 87-235 (421)
364 PRK13184 pknD serine/threonine 71.6 23 0.0005 49.6 11.7 131 1732-1865 481-625 (932)
365 KOG2422|consensus 71.5 1.8E+02 0.0039 38.8 18.4 97 1729-1828 345-450 (665)
366 PF11207 DUF2989: Protein of u 70.4 1E+02 0.0022 36.2 14.6 53 1763-1816 141-197 (203)
367 PF04190 DUF410: Protein of un 70.4 2.4E+02 0.0052 34.2 18.6 80 1761-1860 88-170 (260)
368 PF04190 DUF410: Protein of un 70.1 2.6E+02 0.0055 33.9 19.2 28 1724-1751 88-115 (260)
369 COG3629 DnrI DNA-binding trans 69.1 30 0.00065 42.3 10.6 81 1573-1668 136-216 (280)
370 PF15015 NYD-SP12_N: Spermatog 68.8 24 0.00053 44.6 9.8 92 1611-1702 182-291 (569)
371 KOG0529|consensus 68.7 85 0.0018 40.2 14.5 136 1738-1876 40-194 (421)
372 KOG2581|consensus 67.6 38 0.00083 42.9 11.1 131 1735-1865 135-281 (493)
373 COG2912 Uncharacterized conser 66.6 21 0.00045 43.2 8.5 68 1800-1867 184-251 (269)
374 PF10373 EST1_DNA_bind: Est1 D 66.2 16 0.00034 43.3 7.6 62 1745-1809 1-62 (278)
375 PF04053 Coatomer_WDAD: Coatom 65.2 55 0.0012 42.5 12.6 75 1580-1664 324-398 (443)
376 COG3947 Response regulator con 64.9 41 0.00089 41.1 10.3 146 1552-1702 169-342 (361)
377 PF12862 Apc5: Anaphase-promot 64.4 26 0.00056 35.5 7.7 55 1738-1792 10-70 (94)
378 PF10579 Rapsyn_N: Rapsyn N-te 64.1 33 0.00072 34.5 7.9 62 1606-1667 7-71 (80)
379 COG2912 Uncharacterized conser 63.9 32 0.0007 41.7 9.4 71 1765-1835 183-253 (269)
380 KOG2581|consensus 62.1 4.2E+02 0.0091 34.3 18.4 133 1612-1759 133-280 (493)
381 PF12862 Apc5: Anaphase-promot 61.5 28 0.0006 35.4 7.2 54 1615-1668 8-70 (94)
382 PF10373 EST1_DNA_bind: Est1 D 60.9 25 0.00054 41.6 8.0 62 1782-1843 1-62 (278)
383 COG3629 DnrI DNA-binding trans 60.5 34 0.00074 41.8 8.9 62 1764-1825 154-215 (280)
384 KOG4014|consensus 60.1 2.8E+02 0.006 32.4 15.0 184 1604-1826 33-233 (248)
385 COG4941 Predicted RNA polymera 59.8 3.8E+02 0.0082 33.9 17.1 185 1620-1835 211-403 (415)
386 PF00244 14-3-3: 14-3-3 protei 58.8 1.3E+02 0.0027 36.0 13.1 61 1607-1667 3-65 (236)
387 PF12739 TRAPPC-Trs85: ER-Golg 57.9 2.6E+02 0.0057 36.0 16.7 94 1763-1863 300-402 (414)
388 KOG4014|consensus 56.7 3.7E+02 0.0081 31.4 15.3 184 1571-1793 33-234 (248)
389 PF09670 Cas_Cas02710: CRISPR- 55.6 2E+02 0.0043 36.8 14.9 63 1606-1668 132-198 (379)
390 KOG1463|consensus 54.7 1.3E+02 0.0027 37.9 12.2 174 1643-1828 132-318 (411)
391 COG1747 Uncharacterized N-term 54.5 6.7E+02 0.014 33.5 22.8 206 1636-1865 63-293 (711)
392 KOG1972|consensus 54.1 21 0.00045 48.3 6.1 132 812-947 721-869 (913)
393 PF11817 Foie-gras_1: Foie gra 50.5 80 0.0017 37.7 9.8 65 1725-1789 177-244 (247)
394 PF09670 Cas_Cas02710: CRISPR- 50.5 2.3E+02 0.0051 36.1 14.4 168 1729-1898 134-309 (379)
395 KOG0546|consensus 50.0 18 0.00039 45.0 4.3 120 1731-1871 227-349 (372)
396 KOG1920|consensus 49.2 1.4E+02 0.0031 42.5 12.6 50 1767-1823 1003-1052(1265)
397 KOG0546|consensus 49.1 16 0.00035 45.5 3.7 115 1769-1899 228-342 (372)
398 PF12739 TRAPPC-Trs85: ER-Golg 48.3 4.3E+02 0.0092 34.2 16.4 93 1728-1828 302-401 (414)
399 PF11207 DUF2989: Protein of u 47.9 72 0.0016 37.3 8.5 78 1615-1693 116-198 (203)
400 PF07720 TPR_3: Tetratricopept 46.3 47 0.001 28.5 5.0 31 1833-1863 3-35 (36)
401 COG3947 Response regulator con 45.6 64 0.0014 39.6 7.8 59 1800-1858 282-340 (361)
402 KOG0276|consensus 44.7 1.7E+02 0.0036 39.2 11.6 50 1734-1791 645-694 (794)
403 smart00299 CLH Clathrin heavy 44.4 4.2E+02 0.0092 28.2 14.6 30 1654-1683 22-51 (140)
404 KOG2114|consensus 43.3 2.3E+02 0.0049 39.3 12.9 207 1610-1858 339-548 (933)
405 PF07720 TPR_3: Tetratricopept 42.7 57 0.0012 27.9 5.0 21 1607-1627 3-23 (36)
406 PF10579 Rapsyn_N: Rapsyn N-te 42.5 97 0.0021 31.3 7.2 50 1736-1785 16-65 (80)
407 smart00101 14_3_3 14-3-3 homol 42.3 7.1E+02 0.015 30.2 17.7 58 1607-1664 3-64 (244)
408 KOG2062|consensus 41.4 5.9E+02 0.013 35.2 15.8 244 1654-1951 38-297 (929)
409 PF07721 TPR_4: Tetratricopept 40.3 30 0.00065 27.0 2.8 22 1833-1854 3-24 (26)
410 PF10255 Paf67: RNA polymerase 40.0 54 0.0012 42.1 6.5 62 1764-1825 123-192 (404)
411 PF15297 CKAP2_C: Cytoskeleton 39.0 44 0.00096 41.8 5.3 45 864-908 120-167 (353)
412 COG3014 Uncharacterized protei 39.0 6.8E+02 0.015 31.9 14.9 37 1763-1799 213-249 (449)
413 PF07721 TPR_4: Tetratricopept 38.8 35 0.00077 26.6 3.0 19 1767-1785 5-23 (26)
414 KOG2114|consensus 38.7 3.6E+02 0.0077 37.6 13.5 87 1604-1696 367-454 (933)
415 PF13041 PPR_2: PPR repeat fam 38.2 90 0.0019 27.6 5.9 43 731-773 2-45 (50)
416 COG5187 RPN7 26S proteasome re 38.0 6E+02 0.013 31.6 14.0 144 1600-1759 69-225 (412)
417 KOG1166|consensus 37.7 1.8E+02 0.0039 41.4 11.3 104 811-918 32-155 (974)
418 PF01535 PPR: PPR repeat; Int 37.3 41 0.00088 26.1 3.2 28 734-761 2-29 (31)
419 PF10255 Paf67: RNA polymerase 37.2 53 0.0011 42.1 5.8 63 1728-1791 124-192 (404)
420 KOG2280|consensus 37.0 1E+03 0.023 33.1 17.2 102 1734-1854 692-793 (829)
421 KOG0686|consensus 36.9 1.3E+02 0.0028 38.6 8.7 138 1726-1863 150-307 (466)
422 KOG2063|consensus 35.8 9.1E+02 0.02 34.4 17.1 174 1641-1825 506-712 (877)
423 PF12854 PPR_1: PPR repeat 35.8 52 0.0011 27.4 3.7 28 731-758 6-33 (34)
424 KOG4521|consensus 35.6 1.3E+03 0.028 33.8 18.0 188 1605-1826 920-1132(1480)
425 PF10516 SHNi-TPR: SHNi-TPR; 35.6 50 0.0011 28.7 3.6 30 1832-1861 2-31 (38)
426 KOG0686|consensus 35.5 2.7E+02 0.0059 35.9 11.2 101 1674-1790 151-256 (466)
427 PF10516 SHNi-TPR: SHNi-TPR; 34.8 51 0.0011 28.7 3.5 28 1641-1668 3-30 (38)
428 PF11817 Foie-gras_1: Foie gra 34.6 2E+02 0.0044 34.3 9.9 81 1620-1700 153-245 (247)
429 KOG0276|consensus 34.3 1.7E+02 0.0037 39.1 9.4 78 1730-1826 618-695 (794)
430 KOG2063|consensus 32.5 1.4E+03 0.03 32.8 18.0 174 1607-1791 506-712 (877)
431 KOG1920|consensus 31.6 5.5E+02 0.012 37.2 13.9 15 1573-1587 888-902 (1265)
432 COG4455 ImpE Protein of avirul 30.3 1.7E+02 0.0038 34.8 7.9 62 1612-1673 8-69 (273)
433 COG4455 ImpE Protein of avirul 30.2 7.8E+02 0.017 29.8 12.9 62 1733-1797 8-69 (273)
434 PRK12798 chemotaxis protein; R 29.8 1.4E+03 0.03 30.0 27.3 225 1611-1856 86-320 (421)
435 PRK11619 lytic murein transgly 28.7 1.7E+03 0.037 30.7 28.2 257 1627-1892 84-372 (644)
436 PF14863 Alkyl_sulf_dimr: Alky 28.7 1.3E+02 0.0028 33.4 6.3 49 1605-1653 70-118 (141)
437 PRK12798 chemotaxis protein; R 28.3 1.5E+03 0.032 29.8 21.6 201 1604-1823 111-321 (421)
438 COG3014 Uncharacterized protei 27.1 9.6E+02 0.021 30.6 13.6 30 1726-1755 125-154 (449)
439 KOG4521|consensus 26.9 1.4E+03 0.03 33.5 16.2 214 1612-1863 892-1135(1480)
440 KOG4279|consensus 26.8 1.8E+02 0.004 39.6 8.0 180 1673-1872 201-404 (1226)
441 PF13041 PPR_2: PPR repeat fam 26.1 2.1E+02 0.0046 25.2 6.2 24 1643-1666 7-30 (50)
442 PF04097 Nic96: Nup93/Nic96; 25.9 1.1E+03 0.023 32.4 15.3 86 1610-1700 263-354 (613)
443 PF09797 NatB_MDM20: N-acetylt 25.7 6.6E+02 0.014 31.7 12.8 149 1581-1750 151-310 (365)
444 PF04840 Vps16_C: Vps16, C-ter 25.4 1.4E+03 0.031 28.6 18.9 98 1736-1853 187-284 (319)
445 TIGR02996 rpt_mate_G_obs repea 25.1 1.2E+02 0.0025 27.3 4.1 33 801-833 4-36 (42)
446 TIGR03362 VI_chp_7 type VI sec 25.1 1.4E+03 0.031 28.5 15.6 48 1617-1665 111-158 (301)
447 cd02682 MIT_AAA_Arch MIT: doma 25.0 2E+02 0.0043 28.9 6.2 22 1803-1824 12-33 (75)
448 KOG0687|consensus 24.9 1E+03 0.023 30.2 13.3 108 1673-1793 104-211 (393)
449 KOG1166|consensus 24.6 9.6E+02 0.021 34.6 14.7 120 766-895 34-163 (974)
450 COG4941 Predicted RNA polymera 24.5 1.6E+03 0.034 28.8 17.3 133 1651-1804 268-406 (415)
451 KOG4279|consensus 24.5 3.3E+02 0.0071 37.4 9.6 70 1618-1688 256-335 (1226)
452 smart00299 CLH Clathrin heavy 24.3 8.8E+02 0.019 25.8 15.0 49 1614-1663 16-64 (140)
453 TIGR03504 FimV_Cterm FimV C-te 24.1 1E+02 0.0023 27.6 3.8 26 1834-1859 2-27 (44)
454 TIGR00756 PPR pentatricopeptid 23.7 1.1E+02 0.0023 24.0 3.5 28 734-761 2-29 (35)
455 COG5187 RPN7 26S proteasome re 22.9 1.1E+03 0.023 29.6 12.7 130 1652-1794 88-223 (412)
456 KOG1497|consensus 22.0 1.7E+03 0.037 28.3 18.6 100 1725-1825 102-212 (399)
457 PF12854 PPR_1: PPR repeat 21.6 1.6E+02 0.0034 24.5 4.2 23 1799-1821 9-31 (34)
458 COG4259 Uncharacterized protei 21.0 1.8E+02 0.0039 30.7 5.2 45 729-777 69-113 (121)
459 KOG0687|consensus 20.5 7E+02 0.015 31.6 10.7 105 1639-1759 104-214 (393)
460 KOG4322|consensus 20.2 6.5E+02 0.014 32.9 10.7 179 1604-1795 272-474 (482)
No 1
>KOG1125|consensus
Probab=100.00 E-value=3.4e-58 Score=553.40 Aligned_cols=381 Identities=24% Similarity=0.345 Sum_probs=296.8
Q ss_pred CCcccccccCCCCCcchhhhhccccccccccccCCCcCCCCCccC----ccccCChhhHHHHHhhhhc----CCCCcccc
Q psy8682 1 MSLKDLVDGGECGGSNSLMQVTSHFVQDKGLRDEGFHRPYTHEEN----SFANAHPDQLLGEFWEHNL----GNMQQAFR 72 (1956)
Q Consensus 1 Ma~r~LVEg~eCGg~NpLm~L~~hf~qD~a~~~Eg~~~~~~~~~~----~~~~~~~~~lv~efl~~~~----~~~pqtF~ 72 (1956)
|+||+|||| .|||+||||||+++|+.|.+..+|+.+.+.++... |...+.+|+++++||.++. .++|++|+
T Consensus 1 M~~~~~v~g-~~tg~Npl~kL~~~~~~~~~~~~~~~~~~~a~~~~~~~~p~~~~~~~~l~~~~lq~~~~p~~~r~P~s~~ 79 (579)
T KOG1125|consen 1 MAMRTLVEG-KCTGSNPLMKLNNTFGLDNNNLQEQLRAHLAKASVAFYIPLQLAEGDELINEFLQQNNQPNVSRGPPSFK 79 (579)
T ss_pred CCccccccc-cccCcCHHHHhhhhccccccccccccccccccchhhhhccccccccchhhHHHHhcccCCcccCCCCccc
Confidence 999999998 99999999999999999999999998754332222 4444577899999994433 35899999
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCCCchhhhhhhhhHHHHHHHHHhcCCC----------CCCC---------C--------
Q psy8682 73 MDNLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSH----------FEHT---------P-------- 125 (1956)
Q Consensus 73 Md~Ll~EM~~Ie~~~~~~~p~~~~~~a~~a~~~~~~~Wa~ef~~~~~~----------~~~~---------~-------- 125 (1956)
||.+|+||++|.+++++..++...+....+ .+++|++.|+.+... ..+. |
T Consensus 80 ~d~~l~~~~~~~~~~~~~~~~~~~~~~~s~---~s~efs~~~~na~~s~~~~t~~~~~~~~~~~~~~~~~~pl~~s~~~~ 156 (579)
T KOG1125|consen 80 MDNLLAETADISIKGVRNASKEFQGLQNSQ---WSEEFSQFFLNALKSDRDVTQPLSRNQHGSEFINESSDPLASSHNRW 156 (579)
T ss_pred hhhhhhccchhhhcccCCcchhcccchhhH---hhhHHHHHhhccccccccccchHhhhcchhhhhccccccccCccccc
Confidence 999999999999999998888887754432 445555555322111 0000 1
Q ss_pred --------------------------------------CccccccCCcCCCCc------------------cc-------
Q psy8682 126 --------------------------------------PETIWDNAPIMRGSE------------------IL------- 142 (1956)
Q Consensus 126 --------------------------------------~~~~~~~~~~~~~~~------------------~~------- 142 (1956)
+..+|+..|....++ +|
T Consensus 157 ~~~~~q~~~e~~~~~~G~~~~~~~~~s~~~~~~~~s~~~~l~~s~~pk~~ng~~~~~W~d~f~~~n~~~e~~f~~a~~~~ 236 (579)
T KOG1125|consen 157 SAEYLQTPEEKSQISNGLATEKDQPGSQRIEELRRSVSEQLIKSLEPKLLNGETEQNWEDQFKSNNYGLEDEFEEAKNSI 236 (579)
T ss_pred chhhhcChhhhcccccccchhccCcchhcchHHHHHHHHHHhhccCcccccCcccccHHHHHhhcCCcchhhHHHHHHHh
Confidence 001122111111121 00
Q ss_pred ----ccccccCCCcC--CCCCchhHHhhccccc--ccCchhhhhhhhhhhhhh---------------------------
Q psy8682 143 ----PQEDLGGLQLG--FGPQWCSEFLRTSEPL--LDNTQEELTNLRALSEDY--------------------------- 187 (1956)
Q Consensus 143 ----~q~~~~~~~~~--~~~~WasEy~~~~~~~--~~~~~~e~~~~~~~~~~~--------------------------- 187 (1956)
+|.+|..+... ..++|+.+|.+....+ +.|.|.|.|||.+++++|
T Consensus 237 e~d~~~~e~eev~~~~~~~~~~~~~~~~~l~~~~~~~Y~F~e~Np~~~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP 316 (579)
T KOG1125|consen 237 EKDDLQAEWEEVADEDVAAHDWLNDYDDSLSAVPVKGYQFSEENPYIDHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDP 316 (579)
T ss_pred hhhhhhhhHHhcChhhhhcchHHHHHhhhhcccccccceecccCcccCCCChHHHHHHHHhcCCchHHHHHHHHHHhhCh
Confidence 23455444432 5788999999999886 789999999996666666
Q ss_pred -----------hhhhhccChhhHHHHHHHHHHH-----------------------HHhhhhhccCCCcchhhccchhhh
Q psy8682 188 -----------SSDANKADSNQNNILLNALKTT-----------------------AEDSVKTLDQNPDMKQSKLLKFMS 233 (1956)
Q Consensus 188 -----------~q~~ne~d~~~~~~l~~~l~~~-----------------------~~~L~~~~~~~Pk~~~s~~l~~~~ 233 (1956)
+|+|||+|.++|.||.+.+++. +.+|..|+..+|||.++-+-....
T Consensus 317 ~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 317 QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 9999999999999999999965 888999999999999843322221
Q ss_pred hhccCCccccCChhHHHHHHHHHHHhhcCCCchhhHHHHHHhhccccccCCCCchhhhh-----------------hhhh
Q psy8682 234 NVATDGTPVLSDPEAATVQQWGSEYQSTTSPEHQWESAFLGQNASVFDLPPRYGPILFC-----------------VSFQ 296 (1956)
Q Consensus 234 ~i~~~e~~v~s~~~~~ea~q~~~e~~~~~~~~~~wd~~~~~aL~~~~~l~~~~~~a~~~-----------------l~~s 296 (1956)
.- ..+-++.+...++.++..|.+++++.|+. .|++++++||++|+|+.+|++|++| ||||
T Consensus 397 ~~-~~~~s~~~~~~l~~i~~~fLeaa~~~~~~--~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAt 473 (579)
T KOG1125|consen 397 DF-ENTKSFLDSSHLAHIQELFLEAARQLPTK--IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGAT 473 (579)
T ss_pred cc-cCCcCCCCHHHHHHHHHHHHHHHHhCCCC--CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHH
Confidence 10 11124455667999999999999999986 8899999999999999999999999 9999
Q ss_pred hhh---hHHHHHHHHHHHhhhhcCCCceeeeeccccccccchhHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCC
Q psy8682 297 WIN---EVKFITLLTLCLIIEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPH 373 (1956)
Q Consensus 297 ~~n---~~~~~~~~~~~l~~~~~~pg~~r~~yn~~i~~~n~~~~~~a~~~~~~al~~q~~~~~~~~~~~~~~~~~~~~~~ 373 (1956)
+|| +.||+++|+|||.+ +||||||||||||||||||+|+|||+|||+||+||++ +++++...
T Consensus 474 LAN~~~s~EAIsAY~rALqL---qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k--------s~~~~~~~---- 538 (579)
T KOG1125|consen 474 LANGNRSEEAISAYNRALQL---QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK--------SRNHNKAP---- 538 (579)
T ss_pred hcCCcccHHHHHHHHHHHhc---CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc--------ccccccCC----
Confidence 999 57999999999999 9999999999999999999999999999999999998 44444332
Q ss_pred CCCchhhhhhhHhHHHHHHHHHHhcCcch-hhhhhccCc
Q psy8682 374 GLEPRAVKEMSDSIWYSLRVVLSVLNRSD-LHHCVTNSP 411 (1956)
Q Consensus 374 ~~~~~~~~~~s~~iw~~lr~~~~~~~~~~-l~~~~~~~~ 411 (1956)
..|++||+|||+||++|+|+| |++++..+-
T Consensus 539 --------~~se~iw~tLR~als~~~~~D~l~~a~~~~n 569 (579)
T KOG1125|consen 539 --------MASENIWQTLRLALSAMNRSDLLQEAAPSRN 569 (579)
T ss_pred --------cchHHHHHHHHHHHHHcCCchHHHHhccccC
Confidence 339999999999999999999 888887653
No 2
>KOG1125|consensus
Probab=100.00 E-value=4.5e-38 Score=380.02 Aligned_cols=505 Identities=36% Similarity=0.611 Sum_probs=413.1
Q ss_pred hhccccchhhHHHHHHh-hhcC---CCchhhchHHHHHHHHHhhHhcCCCCCCCCcchhhhhhcchHHHHHHHHHhcCCc
Q psy8682 1131 LGISLAENEQLLGEFWE-HNLG---NMQQAFRMDNLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSH 1206 (1956)
Q Consensus 1131 ~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1206 (1956)
.|..++++++|+.+||+ .+.+ |+|++|+||++++||++|.+.++|++|+..+|+..++ .+++|++.|+.+...
T Consensus 48 ~p~~~~~~~~l~~~~lq~~~~p~~~r~P~s~~~d~~l~~~~~~~~~~~~~~~~~~~~~~~s~---~s~efs~~~~na~~s 124 (579)
T KOG1125|consen 48 IPLQLAEGDELINEFLQQNNQPNVSRGPPSFKMDNLLAETADISIKGVRNASKEFQGLQNSQ---WSEEFSQFFLNALKS 124 (579)
T ss_pred ccccccccchhhHHHHhcccCCcccCCCCccchhhhhhccchhhhcccCCcchhcccchhhH---hhhHHHHHhhccccc
Confidence 44446999999999998 4444 8999999999999999999999999999999999998 999999999999887
Q ss_pred ---cCCCCCcCcccccccccCCCccccccccCCcCCCCccchhhhhhcccccchhhhHHHhhhhhccccccchhhhhcch
Q psy8682 1207 ---FEHTPPETIWDNAPIMRGSEILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTNLRALSEDYSSDANKADSN 1283 (1956)
Q Consensus 1207 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1283 (1956)
+++......|.++|| .++.+|+.. +...|..+|+++.+++.| +. ++ +++.+|..
T Consensus 125 ~~~~t~~~~~~~~~~~~~--------~~~~~pl~~-s~~~~~~~~~q~~~e~~~--~~---------~G---~~~~~~~~ 181 (579)
T KOG1125|consen 125 DRDVTQPLSRNQHGSEFI--------NESSDPLAS-SHNRWSAEYLQTPEEKSQ--IS---------NG---LATEKDQP 181 (579)
T ss_pred cccccchHhhhcchhhhh--------ccccccccC-cccccchhhhcChhhhcc--cc---------cc---cchhccCc
Confidence 555556788899999 888888754 577899999999999999 32 23 46667776
Q ss_pred hhhhhHHHHHHHHHHhhhhcCCCCcchhhHHHHHHhhccCCCccccCChhhhhhhccccccccCCCCccchHHHHhhccC
Q psy8682 1284 QNNILLNALKTTAEDSVKTLDQNPDMKQSKLLKFMSNVATDGTPVLSDPEAATVQQWGSEFQSTTSPEHQWESAFLGQNA 1363 (1956)
Q Consensus 1284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1363 (1956)
.++..+++.+|+.+.+.+.. +||+.|++ -+++|+++|...+-
T Consensus 182 -~s~~~~~~~~s~~~~l~~s~-~pk~~ng~------------------------------------~~~~W~d~f~~~n~ 223 (579)
T KOG1125|consen 182 -GSQRIEELRRSVSEQLIKSL-EPKLLNGE------------------------------------TEQNWEDQFKSNNY 223 (579)
T ss_pred -chhcchHHHHHHHHHHhhcc-CcccccCc------------------------------------ccccHHHHHhhcCC
Confidence 77888999999999998886 99998776 12366666655110
Q ss_pred CCcccccccCCCCCCCCchhHHhhhhhhccccccCCCCCCCcchhHHHhhhhcccccccccceeeccCCCCCCcchhhhh
Q psy8682 1364 SGTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHVSLVFDLRPRYGPILFCVSF 1443 (1956)
Q Consensus 1364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1443 (1956)
+ .+ ++|
T Consensus 224 -~---------------------------------------~e---~~f------------------------------- 229 (579)
T KOG1125|consen 224 -G---------------------------------------LE---DEF------------------------------- 229 (579)
T ss_pred -c---------------------------------------ch---hhH-------------------------------
Confidence 0 00 222
Q ss_pred hcchhhhhhhHHHHHHhhcchhhhhhchhhhhhccccccCCCCCCCCcccccccccccCCCCcchhhccCChHHHHHHHH
Q psy8682 1444 QWINEVKFITLCLIIEVNQHGIHICGRQSYAERNQCFCFGPGKAQTGPLFSNGVASINQQPVPNTNGNLHSLDRTLAVSK 1523 (1956)
Q Consensus 1444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ae~~~c~~~~p~~a~~~~lf~~a~aslgq~~v~n~yg~l~~fDEAIevfk 1523 (1956)
+.++. .
T Consensus 230 --------------------------------------------------~~a~~----------------------~-- 235 (579)
T KOG1125|consen 230 --------------------------------------------------EEAKN----------------------S-- 235 (579)
T ss_pred --------------------------------------------------HHHHH----------------------H--
Confidence 21121 0
Q ss_pred HhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhchhhHhHhhhhccCCCc
Q psy8682 1524 LFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQ 1603 (1956)
Q Consensus 1524 ~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~ 1603 (1956)
.++ +.++..|+.+..... ..+.|+.+|+..+.. .+.+.|.+...||..
T Consensus 236 -----------~e~----------------d~~~~e~eev~~~~~----~~~~~~~~~~~~l~~-~~~~~Y~F~e~Np~~ 283 (579)
T KOG1125|consen 236 -----------IEK----------------DDLQAEWEEVADEDV----AAHDWLNDYDDSLSA-VPVKGYQFSEENPYI 283 (579)
T ss_pred -----------hhh----------------hhhhhhHHhcChhhh----hcchHHHHHhhhhcc-cccccceecccCccc
Confidence 000 234556777776553 789999999999998 123889999999988
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+...-|..|..+++.|+..+|+-+|+.+++.+|.++++|..||.+....++-..|+..+++|++++|++..++..||..|
T Consensus 284 ~~pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSy 363 (579)
T KOG1125|consen 284 DHPDPFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSY 363 (579)
T ss_pred CCCChHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|.-.+|+.++.+.+.. .|. |..+...... .... ..........+..-.++|..+....|.. +++
T Consensus 364 tNeg~q~~Al~~L~~Wi~~----~p~---y~~l~~a~~~-~~~~----~~~s~~~~~~l~~i~~~fLeaa~~~~~~-~Dp 430 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRN----KPK---YVHLVSAGEN-EDFE----NTKSFLDSSHLAHIQELFLEAARQLPTK-IDP 430 (579)
T ss_pred hhhhhHHHHHHHHHHHHHh----Ccc---chhccccCcc-cccc----CCcCCCCHHHHHHHHHHHHHHHHhCCCC-CCh
Confidence 9999999999999999999 777 5554422100 0000 0011112223344556777888888853 569
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
+++..||.+|...|+|++|+.||+.||...|++..+|+.||.++....+.++|+..|++|+++.|.+++++++||.++..
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN 510 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN 510 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCc
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL 1900 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~ 1900 (1956)
+|.|++|+++|-.||.+.+.+.. .... +.-++.||.+||.++.++++.+
T Consensus 511 lG~ykEA~~hlL~AL~mq~ks~~---~~~~-----~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 511 LGAYKEAVKHLLEALSMQRKSRN---HNKA-----PMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhhHHHHHHHHHHHHHhhhcccc---cccC-----CcchHHHHHHHHHHHHHcCCch
Confidence 99999999999999999988332 2211 2226889999999999999853
No 3
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.7e-29 Score=327.18 Aligned_cols=324 Identities=16% Similarity=0.182 Sum_probs=279.8
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
...+...+++++|++++..+.... + .+...| ..++ ..+...+++++|+
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~--~---------------~~~~~~-------~~l~--------~~~~~~~~~~~A~ 621 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA--P---------------DSPEAW-------LMLG--------RAQLAAGDLNKAV 621 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC--C---------------CCHHHH-------HHHH--------HHHHHcCCHHHHH
Confidence 456777888888888877553221 0 022223 3333 2344457788888
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
.. |++++...|.++ ..+..+|.++...|++++|+..|+++++.+|++..++..++.++...|++++|+..++.+
T Consensus 622 ~~--~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 622 SS--FKKLLALQPDSA----LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HH--HHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88 888887766554 488999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHH
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEA 1745 (1956)
.+..|.....+..+|.++...|++++|+..|++++.. .|+ . .....++.++...|++++|
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~----~~~---~-------------~~~~~l~~~~~~~g~~~~A 755 (899)
T TIGR02917 696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR----APS---S-------------QNAIKLHRALLASGNTAEA 755 (899)
T ss_pred HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CCC---c-------------hHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999999999999999999999988 666 1 3456788999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
...++++++..|++ ..+++.+|.+|...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+..+++++.
T Consensus 756 ~~~~~~~l~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~ 831 (899)
T TIGR02917 756 VKTLEAWLKTHPND---AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALK 831 (899)
T ss_pred HHHHHHHHHhCCCC---HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHh
Confidence 99999999999998 89999999999999999999999999999999999999999999999999 889999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
..|+++..+..+|.++...|++++|+.+|+++++++|.++.++..++.++...|+..+++ ..+.++
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~ 897 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEAR-KELDKL 897 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998887 444443
No 4
>KOG4626|consensus
Probab=99.97 E-value=4.1e-31 Score=316.64 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=259.6
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++...||.. |++|++++|.-+. +++++|.+|...+.++.|+.+|.+|+.+.|+++.++-++|.+|+.+|..+-
T Consensus 231 ~Gei~~aiq~--y~eAvkldP~f~d----AYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldl 304 (966)
T KOG4626|consen 231 QGEIWLAIQH--YEEAVKLDPNFLD----AYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDL 304 (966)
T ss_pred cchHHHHHHH--HHHhhcCCCcchH----HHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHH
Confidence 3455667777 8899988877655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
|+..|++++++.|+.++++.+||.++...|+..+|..+|++++.+ .|. .+++.++||.+|.
T Consensus 305 AI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l----~p~---------------hadam~NLgni~~ 365 (966)
T KOG4626|consen 305 AIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL----CPN---------------HADAMNNLGNIYR 365 (966)
T ss_pred HHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh----CCc---------------cHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 666 5677899999999
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
++|.+++|..+|.++++..|.. +.+..+||.+|..+|++++|+.+|++++++.|..++++.++|..|..+|+.+.|+
T Consensus 366 E~~~~e~A~~ly~~al~v~p~~---aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~ 442 (966)
T KOG4626|consen 366 EQGKIEEATRLYLKALEVFPEF---AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAI 442 (966)
T ss_pred HhccchHHHHHHHHHHhhChhh---hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHH
Confidence 9999999999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhh
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAV 1878 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~l 1878 (1956)
++|.+|+.++|..++++.+||.+|...|+..+|+..|++||+++|+.++++-++..++.-.
T Consensus 443 q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~v 503 (966)
T KOG4626|consen 443 QCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIV 503 (966)
T ss_pred HHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999998776543
No 5
>KOG4626|consensus
Probab=99.97 E-value=1.1e-29 Score=304.35 Aligned_cols=295 Identities=19% Similarity=0.261 Sum_probs=277.1
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++..+|..+ |.+|+...|. -+.+|-++|.++..+|+.-.|+..|++|++++|+..++|++||.+|...+.+
T Consensus 195 ka~Grl~ea~~c--YlkAi~~qp~----fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 195 KAEGRLEEAKAC--YLKAIETQPC----FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred HhhcccchhHHH--HHHHHhhCCc----eeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 334566677776 8999977664 4559999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
++|+.+|.+|+.+.|+++.++-++|.+|+.+|..+-|+..|++++++ +|. ...++.++|.+
T Consensus 269 d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~----~P~---------------F~~Ay~NlanA 329 (966)
T KOG4626|consen 269 DRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL----QPN---------------FPDAYNNLANA 329 (966)
T ss_pred hHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc----CCC---------------chHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999 666 56788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+...|+..+|..+|.+++.+.|.. +++.++||.+|..+|.+++|...|.++++..|..+.+..+||.+|.++|++++
T Consensus 330 Lkd~G~V~ea~~cYnkaL~l~p~h---adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~ 406 (966)
T KOG4626|consen 330 LKDKGSVTEAVDCYNKALRLCPNH---ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDD 406 (966)
T ss_pred HHhccchHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHH
Confidence 999999999999999999999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
|+.+|+.|+.+.|..++++.++|..|..+|+...|+.+|.+|+.++|..++++.+||.+|...|+..++| ..++.|+.+
T Consensus 407 Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI-~sY~~aLkl 485 (966)
T KOG4626|consen 407 AIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAI-QSYRTALKL 485 (966)
T ss_pred HHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHH-HHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 667888888
Q ss_pred CCCC
Q psy8682 1896 FGDK 1899 (1956)
Q Consensus 1896 ~gr~ 1899 (1956)
-++-
T Consensus 486 kPDf 489 (966)
T KOG4626|consen 486 KPDF 489 (966)
T ss_pred CCCC
Confidence 7764
No 6
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.4e-25 Score=290.42 Aligned_cols=304 Identities=20% Similarity=0.185 Sum_probs=194.6
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++++|+.. +.+++...|.+ ...++.++..+...|++++|+..+++++...|.+..++..+|.++...|++++|
T Consensus 547 ~~~~~A~~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 620 (899)
T TIGR02917 547 GNEEEAVAW--LEKAAELNPQE----IEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKA 620 (899)
T ss_pred CCHHHHHHH--HHHHHHhCccc----hhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345555554 55555443332 235556666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-chhhhhhcCc------------------
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALP------------------ 1719 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd-~eay~~Ll~~------------------ 1719 (1956)
+..|+++++..|++..++..+|.++...|++++|+..++++++. +|+ ...+..+...
T Consensus 621 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 621 VSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALEL----KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666655 444 0000000000
Q ss_pred chhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy8682 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799 (1956)
Q Consensus 1720 ~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA 1799 (1956)
...+.....+..+|.++...|++++|+..|++++...|++ ..+..++.++...|++++|+..++++++..|++..+
T Consensus 697 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~ 772 (899)
T TIGR02917 697 KQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS----QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVL 772 (899)
T ss_pred hhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc----hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 0011233445667777777777777777777777777664 455667777777777777777777777777777777
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1800 ~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
+..+|.++...|++++|+..|+++++..|+++.++..+|.++...|+ .+|+.++++++.+.|+++..+..+|.++...|
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 851 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG 851 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 77777777777777777777777777777777777777777777777 66777777777777777777777777777777
Q ss_pred ccHHHHHHHHHhccccCCC
Q psy8682 1880 EMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1880 ~~seAIws~Lr~Al~l~gr 1898 (1956)
++.+++ ..+++++...+.
T Consensus 852 ~~~~A~-~~~~~a~~~~~~ 869 (899)
T TIGR02917 852 EADRAL-PLLRKAVNIAPE 869 (899)
T ss_pred CHHHHH-HHHHHHHhhCCC
Confidence 776666 566666665543
No 7
>KOG2047|consensus
Probab=99.92 E-value=5.4e-25 Score=266.64 Aligned_cols=259 Identities=12% Similarity=0.200 Sum_probs=223.1
Q ss_pred CchhHHHhhhcccccCCCCCCCCCCCCCcccccccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCC
Q psy8682 651 GIDPVITIFLSEFFSKPVDTPGQESNPRPSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI 730 (1956)
Q Consensus 651 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~ 730 (1956)
.+.+++++++.-.. ....|.|++-|||.|+|||.|+||+|+||+| ++| +.++..++|.+.+.+..+
T Consensus 444 Al~lm~~A~~vP~~-~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE-------s~g---tfestk~vYdriidLria--- 509 (835)
T KOG2047|consen 444 ALKLMRRATHVPTN-PELEYYDNSEPVQARLHRSLKIWSMYADLEE-------SLG---TFESTKAVYDRIIDLRIA--- 509 (835)
T ss_pred HHHHHHhhhcCCCc-hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH-------Hhc---cHHHHHHHHHHHHHHhcC---
Confidence 45688888888552 1247778888999999999999999999999 456 999999999999999998
Q ss_pred ChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC--CCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhh
Q psy8682 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--PDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRK 808 (1956)
Q Consensus 731 d~dV~~~La~Ly~~sgeyEkArelFerALkkf--P~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~ 808 (1956)
+|.+-+++|.+++....++.|.++|++.++.| |.-++||+.|+..+..+. ... ..+|||.+||+||..
T Consensus 510 TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ry---gg~-------klEraRdLFEqaL~~ 579 (835)
T KOG2047|consen 510 TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRY---GGT-------KLERARDLFEQALDG 579 (835)
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHh---cCC-------CHHHHHHHHHHHHhc
Confidence 89999999999999999999999999999988 677999999998766221 111 256899999999999
Q ss_pred cCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HH
Q psy8682 809 NRM--VISNWIKYAQWEESQKQVDRARSIYERALDVDH--RNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA--NQ 882 (1956)
Q Consensus 809 ~~~--s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~P--k~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks--~~ 882 (1956)
||. +..+++.||+||++.|-..+|.+||+||.+..+ ...++|+.|+.-....-.+-+.|.||++|+...|++ ..
T Consensus 580 Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~ 659 (835)
T KOG2047|consen 580 CPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKARE 659 (835)
T ss_pred CCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHH
Confidence 964 368999999999999999999999999998544 457899999998888888899999999999998876 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc-----cCchHHHHHHHHhhcccccchHHHHHH
Q psy8682 883 FWYKYTYMEEMLENVAGKLFVFHRDS-----ISQVTLWLGALTLSLEGLGSNLQSWVR 935 (1956)
Q Consensus 883 LW~kYidfE~k~Gd~e~aR~VfERAL-----~~~~~LWl~Yi~fEle~~~~~lk~~~r 935 (1956)
+.++|++||.+.|.+++||.||.-+- ..+.++|..|-+||+.|+. -+.++.
T Consensus 660 mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGn--edT~ke 715 (835)
T KOG2047|consen 660 MCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGN--EDTYKE 715 (835)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCC--HHHHHH
Confidence 89999999999999999999999875 4667899999999999875 344433
No 8
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.92 E-value=1.4e-20 Score=251.44 Aligned_cols=294 Identities=13% Similarity=-0.000 Sum_probs=246.8
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCC-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPM-QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~-~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
.|++++.++... +.......+.+|. .++.+++.+|.++.. ++.++|+..|.+++...|++. ....+|.++...|+
T Consensus 449 ~~~~~~~~~~~~--~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-~~L~lA~al~~~Gr 524 (987)
T PRK09782 449 QWQSQLPGIADN--CPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-QHRAVAYQAYQVED 524 (987)
T ss_pred HHHhhhhhhhhh--HHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-HHHHHHHHHHHCCC
Confidence 345555443333 3344444444443 266799999999987 899999999999999999754 46677888889999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
+++|+..|++++...|.. ..+..+|.++...|++++|+.+|+++++. +|. + ...+..++.
T Consensus 525 ~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA~~~l~qAL~l----~P~---~------------~~l~~~La~ 584 (987)
T PRK09782 525 YATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAARDRWLQQAEQR----GLG---D------------NALYWWLHA 584 (987)
T ss_pred HHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCc---c------------HHHHHHHHH
Confidence 999999999988776654 46789999999999999999999999998 666 2 122334566
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGrye 1814 (1956)
.....|++++|+..|+++++.+|+ ..++..+|.++.++|++++|+..|++++.++|+++.++.++|.++...|+++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~l~P~----~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~e 660 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLNIAPS----ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIA 660 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 666779999999999999999994 7889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccc
Q psy8682 1815 EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~ 1894 (1956)
+|+..|+++++++|+++.+++++|.++..+|++++|+.+|+++++++|+++.+....|.+.....++..+. ..++++..
T Consensus 661 eAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~-~~~~r~~~ 739 (987)
T PRK09782 661 QSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH-EEVGRRWT 739 (987)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH-HHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999888777765555 55555544
Q ss_pred cCCC
Q psy8682 1895 PFGD 1898 (1956)
Q Consensus 1895 l~gr 1898 (1956)
....
T Consensus 740 ~~~~ 743 (987)
T PRK09782 740 FSFD 743 (987)
T ss_pred cCcc
Confidence 4333
No 9
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=8e-23 Score=264.05 Aligned_cols=256 Identities=14% Similarity=0.069 Sum_probs=203.6
Q ss_pred ChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQ---EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1620 dydEAIe~fekALel---dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~l 1696 (1956)
+|++|+..|++++.. .|....++..+|.++..+|++++|+..|+++++++|++..++..+|.++...|++++|+.+|
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~ 388 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDF 388 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 344444444444443 25556677788888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
+++++. +|+ ...+++.+|.++...|++++|+.+|+++++++|++ ..++..+|.++..+
T Consensus 389 ~~al~~----~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~---~~~~~~la~~~~~~ 446 (615)
T TIGR00990 389 DKALKL----NSE---------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF---IFSHIQLGVTQYKE 446 (615)
T ss_pred HHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC---HHHHHHHHHHHHHC
Confidence 888887 555 34567788888999999999999999999999888 88888899999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH------HHHHHHHH-HHcCCHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA------RYNLGITC-VHLGANTQ 1849 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA------~~~LA~ay-~klGdyEE 1849 (1956)
|++++|+..|++++...|+++.++..+|.++..+|++++|+..|++++++.|..... +.+.+.++ ...|++++
T Consensus 447 g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~e 526 (615)
T TIGR00990 447 GSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIE 526 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999899999999999999999999999999999999888764322 22333333 44688999
Q ss_pred HHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1850 Aie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
|+.++++++.++|++..++..+|.++..+|++.+|+ .++..+..+...
T Consensus 527 A~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi-~~~e~A~~l~~~ 574 (615)
T TIGR00990 527 AENLCEKALIIDPECDIAVATMAQLLLQQGDVDEAL-KLFERAAELART 574 (615)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHH-HHHHHHHHHhcc
Confidence 999999999999988888888999999999988888 777777766554
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.92 E-value=4.3e-20 Score=253.90 Aligned_cols=273 Identities=14% Similarity=0.091 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
...+..+|..+...|++++|+..|+++++.+|+++.+++.+|.+|...|++++|+..|+++++..|+++.+++.++..+.
T Consensus 461 ~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~ 540 (1157)
T PRK11447 461 NDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLS 540 (1157)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
..+++++|+..++++... ..++. ...+. ..........++..+...|++++|+.+++ ..|.+ +.
T Consensus 541 ~~~~~~~Al~~l~~l~~~--~~~~~---~~~l~----~~l~~~~~l~~a~~l~~~G~~~eA~~~l~----~~p~~---~~ 604 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRA--QWNSN---IQELA----QRLQSDQVLETANRLRDSGKEAEAEALLR----QQPPS---TR 604 (1157)
T ss_pred hCCCHHHHHHHHHhCCch--hcChh---HHHHH----HHHhhhHHHHHHHHHHHCCCHHHHHHHHH----hCCCC---ch
Confidence 999999999999886543 00111 11111 01112335578899999999999999877 57877 78
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.+|...|++++|++.|+++++..|++..++..+|.++..+
T Consensus 605 ~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~ 684 (1157)
T PRK11447 605 IDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAAL 684 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCh------hchhccccchhhhcccHHHHHHHHHhccc
Q psy8682 1845 GANTQAVEHFLTALNQQAATH------DGLTPHGLEPRAVKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~------dA~~~LG~l~~~lg~~seAIws~Lr~Al~ 1894 (1956)
|++++|+.+|++++...|+++ ..+..+|.++...|+..+|+ ..++.|+.
T Consensus 685 g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~-~~y~~Al~ 739 (1157)
T PRK11447 685 GDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL-ETYKDAMV 739 (1157)
T ss_pred CCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence 999999999999999987654 35556788899999998888 77777764
No 11
>KOG1070|consensus
Probab=99.92 E-value=2e-24 Score=276.59 Aligned_cols=191 Identities=17% Similarity=0.289 Sum_probs=173.4
Q ss_pred cccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhcc
Q psy8682 698 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLD 777 (1956)
Q Consensus 698 ~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~ 777 (1956)
.||++|.|| +.++++++|+||||++++ +.||..|..||..+++++.|.++|+.|+|+|.+..++|+.|+.||.
T Consensus 1503 ~lNlEn~yG---~eesl~kVFeRAcqycd~----~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl 1575 (1710)
T KOG1070|consen 1503 YLNLENAYG---TEESLKKVFERACQYCDA----YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL 1575 (1710)
T ss_pred HHhHHHhhC---cHHHHHHHHHHHHHhcch----HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence 467888999 899999999999999997 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHH
Q psy8682 778 FQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM--VISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTE 855 (1956)
Q Consensus 778 ~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~--s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~Yad 855 (1956)
.+ ++.+ .||.+++||+...|. |+++..++|++|++.|+.||+|++||..|+.+|++.|||+.|++
T Consensus 1576 ~~------ne~~-------aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1576 RQ------NEAE-------AARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred cc------cHHH-------HHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence 32 2223 456677777776655 89999999999999999999999999999999999999999999
Q ss_pred HHHHcCChHHHHHHHHHHHHh--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 856 LEMRNRQVNHARNLWDRAVTI--LPRA-NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 856 fE~k~gnierARsLFERAL~~--~Pks-~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
+|+++|+++.+|.||||++.+ .|+. ..++++|++||+++||.++++.|..||+
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVKARAK 1698 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 999999999999999999984 4444 6778899999999999999999999986
No 12
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=6e-22 Score=255.98 Aligned_cols=300 Identities=13% Similarity=0.072 Sum_probs=259.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
....-.++|++|+.. |++++.+.|+ +..++++|.+|...|++++|+..++++++++|++..+++.+|.+|..+
T Consensus 135 ~~~~~~~~~~~Ai~~--y~~al~~~p~-----~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 135 NKAYRNKDFNKAIKL--YSKAIECKPD-----PVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHcCCHHHHHHH--HHHHHhcCCc-----hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 456667899999999 9999988763 347999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHH------------------------------HH--------------------------
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLE------------------------------AL-------------------------- 1676 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnae------------------------------Al-------------------------- 1676 (1956)
|++++|+..|..+...++.+.. .+
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD 287 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence 9999999887666544332110 00
Q ss_pred -------HHHHHHH---HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1677 -------MAISICF---TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1677 -------~~LA~aY---~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
..++..+ ...+.|++|+.+|++++.. .+. .+..+.++..+|.++...|++++|+
T Consensus 288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~----~~~------------~~~~a~a~~~lg~~~~~~g~~~eA~ 351 (615)
T TIGR00990 288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDL----GKL------------GEKEAIALNLRGTFKCLKGKHLEAL 351 (615)
T ss_pred cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc----CCC------------ChhhHHHHHHHHHHHHHcCCHHHHH
Confidence 1111111 1125688888888888876 211 1345667889999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|+++++++|.. ..++..+|.++..+|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.+|++++++
T Consensus 352 ~~~~kal~l~P~~---~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 352 ADLSKSIELDPRV---TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred HHHHHHHHcCCCc---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 9999999999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+|++..++.++|.++..+|++++|+..|++++...|+++.++..+|.++..+|++.+++ ..+++++.+.+..
T Consensus 429 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~-~~~~~Al~l~p~~ 500 (615)
T TIGR00990 429 DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAI-EKFDTAIELEKET 500 (615)
T ss_pred CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH-HHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999998888 8888888876653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.90 E-value=1.4e-21 Score=254.28 Aligned_cols=294 Identities=14% Similarity=0.085 Sum_probs=261.5
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdye 1656 (1956)
..+++++|+.. |++++...|.++. ++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|+++
T Consensus 88 ~~g~~~~A~~~--l~~~l~~~P~~~~----a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~ 161 (656)
T PRK15174 88 ASSQPDAVLQV--VNKLLAVNVCQPE----DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKEL 161 (656)
T ss_pred hcCCHHHHHHH--HHHHHHhCCCChH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChH
Confidence 36788999988 8999988877665 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
+|+..+++++...|++..++..++. +...|++++|+..+++++.. +|. ........++.++
T Consensus 162 eA~~~~~~~~~~~P~~~~a~~~~~~-l~~~g~~~eA~~~~~~~l~~----~~~--------------~~~~~~~~l~~~l 222 (656)
T PRK15174 162 QAISLARTQAQEVPPRGDMIATCLS-FLNKSRLPEDHDLARALLPF----FAL--------------ERQESAGLAVDTL 222 (656)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH-HHHcCCHHHHHHHHHHHHhc----CCC--------------cchhHHHHHHHHH
Confidence 9999999999999999988877654 78899999999999999887 443 0111224467888
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK----AVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE----Aie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
...|++++|+..|++++...|++ +.++..+|.++...|++++ |+..|+++++++|+++.++..+|.++..+|+
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~ 299 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDG---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQ 299 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 89999999999999999999998 9999999999999999986 8999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
+++|+..++++++++|++..++..+|.++...|++++|+..|++++..+|++...+..+|.++...|++.+++ ..++.+
T Consensus 300 ~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~-~~l~~a 378 (656)
T PRK15174 300 NEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAE-SVFEHY 378 (656)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHH-HHHHHH
Confidence 9999999999999999999999999999999999999999999999999998887777888899999988877 777777
Q ss_pred cccCCCC
Q psy8682 1893 HPPFGDK 1899 (1956)
Q Consensus 1893 l~l~gr~ 1899 (1956)
+...+++
T Consensus 379 l~~~P~~ 385 (656)
T PRK15174 379 IQARASH 385 (656)
T ss_pred HHhChhh
Confidence 7765553
No 14
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=6.6e-21 Score=247.93 Aligned_cols=292 Identities=12% Similarity=0.013 Sum_probs=259.5
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++.+|+.. +...+...|.++. +++.+|......|++++|+..|++++..+|+++.++..+|.++...|++++|
T Consensus 56 g~~~~A~~l--~~~~l~~~p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~A 129 (656)
T PRK15174 56 DETDVGLTL--LSDRVLTAKNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATV 129 (656)
T ss_pred CCcchhHHH--hHHHHHhCCCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHH
Confidence 566677776 6667766666555 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+..|+++++++|++..++..++.++...|++++|+..+++++.. .|+ ....+..+ ..+..
T Consensus 130 i~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~----~P~---------------~~~a~~~~-~~l~~ 189 (656)
T PRK15174 130 ADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE----VPP---------------RGDMIATC-LSFLN 189 (656)
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----CCC---------------CHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999888 666 11223333 34788
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH---
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE--- 1815 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE--- 1815 (1956)
.|++++|+..++++++..|.. .......++.++...|++++|+..|++++...|+++.++..+|.++...|++++
T Consensus 190 ~g~~~eA~~~~~~~l~~~~~~--~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~ 267 (656)
T PRK15174 190 KSRLPEDHDLARALLPFFALE--RQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKL 267 (656)
T ss_pred cCCHHHHHHHHHHHHhcCCCc--chhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHH
Confidence 999999999999999987643 134456678899999999999999999999999999999999999999999996
Q ss_pred -HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccc
Q psy8682 1816 -AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1816 -Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~ 1894 (1956)
|+..|+++++++|++..++..+|.++...|++++|+.++++++.++|+++.++..+|.++...|++.+++ ..+..+..
T Consensus 268 ~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~-~~l~~al~ 346 (656)
T PRK15174 268 QAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAAS-DEFVQLAR 346 (656)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999999999998888 55666666
Q ss_pred cCCCC
Q psy8682 1895 PFGDK 1899 (1956)
Q Consensus 1895 l~gr~ 1899 (1956)
..+..
T Consensus 347 ~~P~~ 351 (656)
T PRK15174 347 EKGVT 351 (656)
T ss_pred hCccc
Confidence 55543
No 15
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.88 E-value=1.8e-20 Score=257.74 Aligned_cols=302 Identities=16% Similarity=0.154 Sum_probs=226.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCcc----------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQN----------ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW 1642 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~d----------aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl 1642 (1956)
..+...+++++|+.. |+++++..|+++... ......+|..+...|++++|+..|+++++.+|+++.++
T Consensus 311 ~~~~~~g~~~eA~~~--l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~ 388 (1157)
T PRK11447 311 QAYSQQGDRARAVAQ--FEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAV 388 (1157)
T ss_pred HHHHHcCCHHHHHHH--HHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 455667889999998 999998888765311 11234568889999999999999999999999999999
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------------------
Q psy8682 1643 LSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT-------------------------------------- 1684 (1956)
Q Consensus 1643 ~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~-------------------------------------- 1684 (1956)
..+|.++...|++++|++.|+++++++|++..++..++.+|.
T Consensus 389 ~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a 468 (1157)
T PRK11447 389 LGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQA 468 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHH
Confidence 999999999999999999999999999999888777776653
Q ss_pred ----HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1685 ----NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1685 ----~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
..|++++|+..|+++++. +|+ ...+++.+|.+|...|++++|+..++++++..|.+
T Consensus 469 ~~~~~~g~~~eA~~~~~~Al~~----~P~---------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~- 528 (1157)
T PRK11447 469 EALENQGKWAQAAELQRQRLAL----DPG---------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPND- 528 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-
Confidence 345555555555555555 443 23345556666666666666666666666666665
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----------------------------------------HHhCCCCHHHH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSA----------------------------------------LQVRPDDSRLW 1800 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekA----------------------------------------Lel~PdnaeA~ 1800 (1956)
+.+++.+|..+...+++++|+..++++ ++..|.++.++
T Consensus 529 --~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~ 606 (1157)
T PRK11447 529 --PEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRID 606 (1157)
T ss_pred --HHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHH
Confidence 555555554444455555444443321 12345566667
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
..+|.++.+.|++++|+..|+++++.+|++..++..++.+|...|++++|+.+|+++++..|+++.++..+|.++...|+
T Consensus 607 ~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~ 686 (1157)
T PRK11447 607 LTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGD 686 (1157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCC
Confidence 77888888889999999999999999999999999999999999999999999999988888888888888888888888
Q ss_pred cHHHHHHHHHhccccCCCC
Q psy8682 1881 MSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1881 ~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+++ ..++.++...+..
T Consensus 687 ~~eA~-~~~~~al~~~~~~ 704 (1157)
T PRK11447 687 TAAAQ-RTFNRLIPQAKSQ 704 (1157)
T ss_pred HHHHH-HHHHHHhhhCccC
Confidence 87777 6777776665443
No 16
>KOG1126|consensus
Probab=99.86 E-value=2e-20 Score=230.92 Aligned_cols=289 Identities=14% Similarity=0.137 Sum_probs=258.3
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe 1660 (1956)
.++|+.. |.+.-....+ ..-.+..+|.+|+..++|++|..+|+.+-++.|...+..-.+..+++.+.+--+--.
T Consensus 335 ~~~A~~~--~~klp~h~~n----t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~ 408 (638)
T KOG1126|consen 335 CREALNL--FEKLPSHHYN----TGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY 408 (638)
T ss_pred HHHHHHH--HHhhHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH
Confidence 3677776 6662222222 334888999999999999999999999999999888888888888888877666556
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC
Q psy8682 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740 (1956)
Q Consensus 1661 ~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG 1740 (1956)
+.+..++.+|+.++.|..+|++|..+++++.|+++|++|+++ +|. .+.+|..+|.-+....
T Consensus 409 Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl----dp~---------------faYayTLlGhE~~~~e 469 (638)
T KOG1126|consen 409 LAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL----DPR---------------FAYAYTLLGHESIATE 469 (638)
T ss_pred HHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc----CCc---------------cchhhhhcCChhhhhH
Confidence 667788999999999999999999999999999999999999 776 4456677888889999
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~y 1820 (1956)
.++.|..+|+.|+..+|.+ ..+|+.+|.+|.++++++.|.-.|++|+.++|.+..+...+|.++.+.|+.++|+..|
T Consensus 470 e~d~a~~~fr~Al~~~~rh---YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 470 EFDKAMKSFRKALGVDPRH---YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HHHhHHHHHHhhhcCCchh---hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 9999999999999999999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1821 HTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1821 eKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
++|+.++|.++-..+..|.++..++++++|+..+++.-++-|+...+++.+|.+|.++|+...|+ ..+..|..+-++
T Consensus 547 ~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al-~~f~~A~~ldpk 623 (638)
T KOG1126|consen 547 EKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL-LHFSWALDLDPK 623 (638)
T ss_pred HHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH-HhhHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999998887 455555555554
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=8.3e-19 Score=212.66 Aligned_cols=271 Identities=14% Similarity=0.047 Sum_probs=234.2
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAEN 1652 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~l 1652 (1956)
..+++++|+.. |.+++...|.+ ..+++.+|..+...|++++|+..+++++...+.. ..++..+|.+|...
T Consensus 47 ~~~~~~~A~~~--~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 47 LNEQPDKAIDL--FIEMLKVDPET----VELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred hcCChHHHHHH--HHHHHhcCccc----HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34678888888 88888876554 5589999999999999999999999998754332 35788999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
|++++|+..|+++++..|.+..++..++.++...|++++|++.++++++. .|. ... ......+..+
T Consensus 121 g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~-------~~~~~~~~~l 186 (389)
T PRK11788 121 GLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL----GGD---SLR-------VEIAHFYCEL 186 (389)
T ss_pred CCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh----cCC---cch-------HHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987 554 100 1123346678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLANGN 1811 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~qlG 1811 (1956)
|.++...|++++|+.+|+++++..|.. ..++..+|.++...|++++|+..+++++...|.+ ..++..++.+|...|
T Consensus 187 a~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g 263 (389)
T PRK11788 187 AQQALARGDLDAARALLKKALAADPQC---VRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALG 263 (389)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhHCcCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999988 8899999999999999999999999999988876 467889999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++++|+..++++++..|+... +..++.++.+.|++++|+..++++++..|++......+
T Consensus 264 ~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~ 322 (389)
T PRK11788 264 DEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL 322 (389)
T ss_pred CHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 999999999999999998754 48899999999999999999999999999977654333
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.84 E-value=1.6e-18 Score=210.06 Aligned_cols=274 Identities=15% Similarity=0.075 Sum_probs=241.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN----LEALMAIS 1680 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn----aeAl~~LA 1680 (1956)
....+.+|..+...|++++|+..|+++++.+|++..++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 35 ~~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La 114 (389)
T PRK11788 35 LSRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELG 114 (389)
T ss_pred ccHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999999999999999998854332 25688999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
.+|...|++++|+.+|+++++. +|. ...++..++.++...|++++|++.++++++..|.+.
T Consensus 115 ~~~~~~g~~~~A~~~~~~~l~~----~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~ 175 (389)
T PRK11788 115 QDYLKAGLLDRAEELFLQLVDE----GDF---------------AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL 175 (389)
T ss_pred HHHHHCCCHHHHHHHHHHHHcC----Ccc---------------hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999987 444 344677889999999999999999999999887651
Q ss_pred C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-HHHHHHH
Q psy8682 1761 I--DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-VRARYNL 1837 (1956)
Q Consensus 1761 ~--~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-aeA~~~L 1837 (1956)
. ....+..+|.++...|++++|+.+|+++++..|+...++..+|.++...|++++|+..|++++..+|.+ ..++..+
T Consensus 176 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l 255 (389)
T PRK11788 176 RVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL 255 (389)
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence 1 123567899999999999999999999999999999999999999999999999999999999998876 4678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+|...|++++|+..++++++..|+... +..+|.++...|++.+++ ..+..++...++.
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~-~~l~~~l~~~P~~ 315 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQ-ALLREQLRRHPSL 315 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHH-HHHHHHHHhCcCH
Confidence 99999999999999999999999998754 488999999999998877 7777777765553
No 19
>KOG0495|consensus
Probab=99.83 E-value=1.7e-19 Score=219.31 Aligned_cols=236 Identities=17% Similarity=0.224 Sum_probs=212.2
Q ss_pred ccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCC
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 763 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP 763 (1956)
...||+.-.-+.+ .|| +.|++..+|.+||.+.|. ....|+-++..+...|+...|+.+...|+..+|
T Consensus 549 k~slWlra~~~ek-------~hg---t~Esl~Allqkav~~~pk---ae~lwlM~ake~w~agdv~~ar~il~~af~~~p 615 (913)
T KOG0495|consen 549 KKSLWLRAAMFEK-------SHG---TRESLEALLQKAVEQCPK---AEILWLMYAKEKWKAGDVPAARVILDQAFEANP 615 (913)
T ss_pred hhHHHHHHHHHHH-------hcC---cHHHHHHHHHHHHHhCCc---chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC
Confidence 4567877665544 788 899999999999999997 688899999999999999999999999999999
Q ss_pred CCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhccc
Q psy8682 764 DFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843 (1956)
Q Consensus 764 ~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~ 843 (1956)
++.+||+.-.+.+. .... .+|||.+|.++-.. ..+..+|++|+.||.-+++.++|+.++|++|..+
T Consensus 616 nseeiwlaavKle~------en~e-------~eraR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f 681 (913)
T KOG0495|consen 616 NSEEIWLAAVKLEF------ENDE-------LERARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKSF 681 (913)
T ss_pred CcHHHHHHHHHHhh------cccc-------HHHHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC
Confidence 99999998885544 1222 45777777777654 6778899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc---cCchHHHHHHHH
Q psy8682 844 HRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS---ISQVTLWLGALT 920 (1956)
Q Consensus 844 Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL---~~~~~LWl~Yi~ 920 (1956)
|...+||++..+++...++++.||.-|-.+++.||.+..||+...++|++.|.+.+||.|++|+. |++..+|+.-|+
T Consensus 682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir 761 (913)
T KOG0495|consen 682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIR 761 (913)
T ss_pred CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998 888999999999
Q ss_pred hhcccccchHHHHHHHHHHHhcccc-Ccc
Q psy8682 921 LSLEGLGSNLQSWVRFLARDVGECC-CGQ 948 (1956)
Q Consensus 921 fEle~~~~~lk~~~r~l~ralkec~-~g~ 948 (1956)
+|+. .++.....-.|+++||||| .|-
T Consensus 762 ~ElR--~gn~~~a~~lmakALQecp~sg~ 788 (913)
T KOG0495|consen 762 MELR--AGNKEQAELLMAKALQECPSSGL 788 (913)
T ss_pred HHHH--cCCHHHHHHHHHHHHHhCCccch
Confidence 9999 4578888999999999999 443
No 20
>KOG1915|consensus
Probab=99.82 E-value=6.9e-20 Score=216.82 Aligned_cols=158 Identities=60% Similarity=1.025 Sum_probs=149.1
Q ss_pred CCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH
Q psy8682 780 PPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR 859 (1956)
Q Consensus 780 ~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k 859 (1956)
+|++++.|+++..++..|.|+-||..|++.+.....|++||+||.+++++.+||+||||||......+.||+.|++||++
T Consensus 40 ppk~~ItD~~EL~eYq~RkRkefEd~irrnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emk 119 (677)
T KOG1915|consen 40 PPKQKITDSEELSEYQLRKRKEFEDQIRRNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMK 119 (677)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHh
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc--cCchHHHHHHHHhhcccccchHHHHHHHH
Q psy8682 860 NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS--ISQVTLWLGALTLSLEGLGSNLQSWVRFL 937 (1956)
Q Consensus 860 ~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL--~~~~~LWl~Yi~fEle~~~~~lk~~~r~l 937 (1956)
.+.+..||+||+||+...|+..+||.+|+-||+..||+..||.||+|-+ .+..+.|+.||+||+. .+..+.....+
T Consensus 120 nk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElR--ykeieraR~IY 197 (677)
T KOG1915|consen 120 NKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELR--YKEIERARSIY 197 (677)
T ss_pred hhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHH--hhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988 8889999999999999 44666666666
Q ss_pred HH
Q psy8682 938 AR 939 (1956)
Q Consensus 938 ~r 939 (1956)
+|
T Consensus 198 er 199 (677)
T KOG1915|consen 198 ER 199 (677)
T ss_pred HH
Confidence 66
No 21
>KOG0495|consensus
Probab=99.82 E-value=3.2e-16 Score=191.31 Aligned_cols=282 Identities=18% Similarity=0.139 Sum_probs=217.8
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
++++...-|..+. .|+..+..+...|+...|...+.++++.+|++-+.|+..-.+.....+++.|..+|.++....
T Consensus 573 lqkav~~~pkae~----lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~s 648 (913)
T KOG0495|consen 573 LQKAVEQCPKAEI----LWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSIS 648 (913)
T ss_pred HHHHHHhCCcchh----HHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC
Confidence 4456655554443 677777778888888888888888888888888888888888888888888888888887765
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
|. ..+|+.-+.+...+++.++|+++++++++. .|. | ...|..+|.++.+.++.+.|...|
T Consensus 649 gT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~----fp~---f------------~Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 649 GT-ERVWMKSANLERYLDNVEEALRLLEEALKS----FPD---F------------HKLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred Cc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHh----CCc---h------------HHHHHHHhHHHHHHHHHHHHHHHH
Confidence 54 346777777778888888888888888887 555 3 334567788888888888888888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
...++..|.. ...|..++.+-...|..-.|...++++.-.+|.+...|......-.+.|+.+.|.....+|++..|+
T Consensus 709 ~~G~k~cP~~---ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~ 785 (913)
T KOG0495|consen 709 LQGTKKCPNS---IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPS 785 (913)
T ss_pred HhccccCCCC---chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 8888888887 7788888888888888888888888888888888888888888888888888888888888776654
Q ss_pred ------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1830 ------------------------------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1830 ------------------------------naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
++.++...|..+....+++.|.+.|.+|+.++|++.++|...=..+...|
T Consensus 786 sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG 865 (913)
T KOG0495|consen 786 SGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHG 865 (913)
T ss_pred cchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhC
Confidence 34456778889999999999999999999999999999887766666677
Q ss_pred ccHHHHHHHHHhccccCCCC
Q psy8682 1880 EMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1880 ~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.-.+.. +-+.++....+++
T Consensus 866 ~eed~k-ev~~~c~~~EP~h 884 (913)
T KOG0495|consen 866 TEEDQK-EVLKKCETAEPTH 884 (913)
T ss_pred CHHHHH-HHHHHHhccCCCC
Confidence 543333 4556655555554
No 22
>KOG1126|consensus
Probab=99.80 E-value=2e-18 Score=213.34 Aligned_cols=265 Identities=15% Similarity=0.153 Sum_probs=236.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.++.-+.+|+++... |+.+.+..|--- +..-.....++...+--+--.+.+..+..+|+.+++|..+|.+|..+
T Consensus 361 rayFEl~~Y~~a~~~--F~~~r~~~p~rv----~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQ 434 (638)
T KOG1126|consen 361 RAYFELIEYDQAERI--FSLVRRIEPYRV----KGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQ 434 (638)
T ss_pred HHHHHHHHHHHHHHH--HHHHHhhccccc----cchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhh
Confidence 356667889999887 877776654322 22333344555555544444556677889999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
++++.|+++|++|++++|...-+|..+|.-+....++|.|..+|++|+.. +|+ .-.+|+.+
T Consensus 435 kdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~r---------------hYnAwYGl 495 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPR---------------HYNAWYGL 495 (638)
T ss_pred hHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----Cch---------------hhHHHHhh
Confidence 99999999999999999999999999999999999999999999999999 665 55688999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
|.+|.++++++.|.-.|++|++++|.+ ..+...+|.++.++|+.++|+..|++|+.++|.++...+..|.++..+++
T Consensus 496 G~vy~Kqek~e~Ae~~fqkA~~INP~n---svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~ 572 (638)
T KOG1126|consen 496 GTVYLKQEKLEFAEFHFQKAVEINPSN---SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGR 572 (638)
T ss_pred hhheeccchhhHHHHHHHhhhcCCccc---hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcc
Confidence 999999999999999999999999999 88999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+++|+..+++..++.|+...+++.+|.+|.++|+.+.|+..|.-|+.++|.-.
T Consensus 573 ~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 573 YVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred hHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99999999999999999999999999999999999999999999999999843
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.80 E-value=3.8e-17 Score=216.57 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=106.0
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
+....+++++|+.. |++++++.|.++. +++.+|.++...|++++|+..++++++.+|+++. +..+|.++...|
T Consensus 58 ~~~~~g~~~~A~~~--~~~al~~~P~~~~----a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g 130 (765)
T PRK10049 58 AYRNLKQWQNSLTL--WQKALSLEPQNDD----YQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG 130 (765)
T ss_pred HHHHcCCHHHHHHH--HHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence 44456788899988 9999988777654 8899999999999999999999999999999999 999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
++++|+..+++++++.|++..++..++.++...+..++|+..+++
T Consensus 131 ~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~ 175 (765)
T PRK10049 131 RHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDD 175 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHh
Confidence 999999999999999999999999999999888888877766664
No 24
>KOG1915|consensus
Probab=99.80 E-value=1.3e-18 Score=206.25 Aligned_cols=215 Identities=20% Similarity=0.253 Sum_probs=189.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhH
Q psy8682 714 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRD 793 (1956)
Q Consensus 714 v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~ 793 (1956)
=.+-|+-.++.|.- +-.+|++||.--+..+++.+||.+|++|+.....+..+|++|+.+.+ ...
T Consensus 58 kRkefEd~irrnR~---~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Em-------------knk 121 (677)
T KOG1915|consen 58 KRKEFEDQIRRNRL---NMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEM-------------KNK 121 (677)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH-------------hhh
Confidence 34568888888875 78899999999999999999999999999999999999999998876 223
Q ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 794 YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRA 873 (1956)
Q Consensus 794 ~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gnierARsLFERA 873 (1956)
....||++++||+...|.-..+|.+|.-.|+..|++.-||+||||.+..-|.- .-|+.|++||.+++++++||+||+|.
T Consensus 122 ~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~e-qaW~sfI~fElRykeieraR~IYerf 200 (677)
T KOG1915|consen 122 QVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDE-QAWLSFIKFELRYKEIERARSIYERF 200 (677)
T ss_pred hHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcH-HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45679999999999989999999999999999999999999999999987764 88999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc------cCchHHHHHHHHhhcccccchHHHHHHHHHHHhccccCc
Q psy8682 874 VTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS------ISQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCCG 947 (1956)
Q Consensus 874 L~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL------~~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~g 947 (1956)
+-.+|+. .-|++|+.||.++|++..+|.||+||+ .-...+.+.+.+||.. .+......-.+.++|-..|-|
T Consensus 201 V~~HP~v-~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~--qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 201 VLVHPKV-SNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEER--QKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred heecccH-HHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCcc
Confidence 9999996 889999999999999999999999998 2334578899999877 556666777778887766655
Q ss_pred c
Q psy8682 948 Q 948 (1956)
Q Consensus 948 ~ 948 (1956)
.
T Consensus 278 r 278 (677)
T KOG1915|consen 278 R 278 (677)
T ss_pred c
Confidence 3
No 25
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.78 E-value=4e-17 Score=218.60 Aligned_cols=271 Identities=11% Similarity=-0.039 Sum_probs=242.3
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++.+|+.. |.++....|++ ...+.+|..+...|++++|+..|++++...|.+ ..++.+|.++...|++++|
T Consensus 490 ~~~~eAi~a--~~~Al~~~Pd~-----~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~-~a~~~la~all~~Gd~~eA 561 (987)
T PRK09782 490 TLPGVALYA--WLQAEQRQPDA-----WQHRAVAYQAYQVEDYATALAAWQKISLHDMSN-EDLLAAANTAQAAGNGAAR 561 (987)
T ss_pred CCcHHHHHH--HHHHHHhCCch-----HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc-HHHHHHHHHHHHCCCHHHH
Confidence 355667776 67777666542 246677888889999999999999988775554 5678999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+.+|+++++.+|+....+..++..+...|++++|+..|+++++. +|+ ..++.++|.++..
T Consensus 562 ~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l----~P~----------------~~a~~~LA~~l~~ 621 (987)
T PRK09782 562 DRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI----APS----------------ANAYVARATIYRQ 621 (987)
T ss_pred HHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCC----------------HHHHHHHHHHHHH
Confidence 99999999999999888888877777889999999999999999 554 3457889999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie 1818 (1956)
.|++++|+..|++++.++|++ +.++.++|.++...|++++|+..|+++++..|+++.++.++|.++..+|++++|+.
T Consensus 622 lG~~deA~~~l~~AL~l~Pd~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 622 RHNVPAAVSDLRAALELEPNN---SNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred CCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 999999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhccc
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~ 1881 (1956)
+|++++++.|++..+....|.+.....+++.|.+.|.++..++|+.. +....|.++...+++
T Consensus 699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~~~~~ 760 (987)
T PRK09782 699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTANNNV 760 (987)
T ss_pred HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhhcccc
Confidence 99999999999999999999999999999999999999999999977 777777776655554
No 26
>KOG1155|consensus
Probab=99.77 E-value=4.3e-17 Score=194.09 Aligned_cols=266 Identities=18% Similarity=0.163 Sum_probs=232.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.-...|.+.+.+.++++|+..|+.+.+.+|...+-+..+..+++-..+-.+-.-+.+.+..++.-.++...-+|+.|...
T Consensus 264 i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr 343 (559)
T KOG1155|consen 264 IKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLR 343 (559)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHH
Confidence 66678899999999999999999999999988877777788777776655555555677788877788888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
++.++|+.+|++++++ +|+ ...+|..+|.-|..+.+...|+..|++|++++|.+ ..+|
T Consensus 344 ~eHEKAv~YFkRALkL----Np~---------------~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D---yRAW 401 (559)
T KOG1155|consen 344 SEHEKAVMYFKRALKL----NPK---------------YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD---YRAW 401 (559)
T ss_pred HhHHHHHHHHHHHHhc----Ccc---------------hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh---HHHH
Confidence 9999999999999999 888 34456788999999999999999999999999998 9999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
+.||++|..++...=|+-+|++|+.+.|+++..|..||.||.++++.++|+++|.+|+.....+..++..||.+|.++++
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred HHHHHHHHHHHHH-------hcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1847 NTQAVEHFLTALN-------QQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1847 yEEAie~yekALe-------LdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
..+|..+|++.++ ..|.-..+..-|+......+++.+|- .|...++..
T Consensus 482 ~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As-~Ya~~~~~~ 536 (559)
T KOG1155|consen 482 LNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEAS-YYATLVLKG 536 (559)
T ss_pred HHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHH-HHHHHHhcC
Confidence 9999999999998 34544556666777777778887765 444444333
No 27
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.77 E-value=1.5e-16 Score=210.89 Aligned_cols=335 Identities=11% Similarity=0.003 Sum_probs=256.9
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
...+...+++++|++++....... |.+ ...+. .+. ......+++++|+
T Consensus 56 A~~~~~~g~~~~A~~~~~~al~~~--P~~---------------~~a~~-------~la--------~~l~~~g~~~eA~ 103 (765)
T PRK10049 56 AVAYRNLKQWQNSLTLWQKALSLE--PQN---------------DDYQR-------GLI--------LTLADAGQYDEAL 103 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCC---------------HHHHH-------HHH--------HHHHHCCCHHHHH
Confidence 356889999999999976543221 111 11221 222 2334467889999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH--
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS-- 1663 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~ye-- 1663 (1956)
.. +++++...|. ++. ++.+|.++...|++++|+..|+++++.+|++..++..+|.++...+..++|+..++
T Consensus 104 ~~--l~~~l~~~P~----~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 104 VK--AKQLVSGAPD----KAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA 176 (765)
T ss_pred HH--HHHHHHhCCC----CHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence 88 8888876544 455 88999999999999999999999999999999999999999887777766555444
Q ss_pred --------------------------------------------HHHHhCCCCHH-------HHHH-HHHHHHHcCCHHH
Q psy8682 1664 --------------------------------------------KCLSIEPKNLE-------ALMA-ISICFTNEACLHD 1691 (1956)
Q Consensus 1664 --------------------------------------------KALeLdPdnae-------Al~~-LA~aY~~lGdydE 1691 (1956)
++++..|.++. ++.. ++ ++...|++++
T Consensus 177 ~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~-~Ll~~g~~~e 255 (765)
T PRK10049 177 NLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG-ALLARDRYKD 255 (765)
T ss_pred CCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH-HHHHhhhHHH
Confidence 33333222211 1111 23 3356677888
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLG 1770 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG 1770 (1956)
|+..|+++++. .|. .|.. +...+|.+|...|++++|+.+|+++++..|.+ .........++
T Consensus 256 A~~~~~~ll~~----~~~------------~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~ 317 (765)
T PRK10049 256 VISEYQRLKAE----GQI------------IPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLF 317 (765)
T ss_pred HHHHHHHhhcc----CCC------------CCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHH
Confidence 88888887766 322 0111 22335889999999999999999999887764 11245677788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCC---------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPD---------------DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~Pd---------------naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
.++...|++++|+..++++....|. ...++..+|.++...|++++|+..+++++...|++..++.
T Consensus 318 ~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~ 397 (765)
T PRK10049 318 YSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRI 397 (765)
T ss_pred HHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 8889999999999999999988762 2357788999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.+|.++...|++++|+..+++++.++|++...++.+|.++...+++.++. ..++.++...++.
T Consensus 398 ~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~-~~~~~ll~~~Pd~ 460 (765)
T PRK10049 398 DYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMD-VLTDDVVAREPQD 460 (765)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999987776 7777777777765
No 28
>KOG0547|consensus
Probab=99.76 E-value=5.1e-17 Score=194.21 Aligned_cols=237 Identities=16% Similarity=0.214 Sum_probs=221.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
++++...|..++..|++-.|...|+++|.++|.+...|..+|.+|.+..+.++-...|.+|..++|+++++|+..|.+++
T Consensus 326 A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f 405 (606)
T KOG0547|consen 326 AEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF 405 (606)
T ss_pred HHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
-++++++|+..|++++.+ +|. .+.++..++.+.+++++++++...|+.+.+..|.. ++
T Consensus 406 lL~q~e~A~aDF~Kai~L----~pe---------------~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~---~E 463 (606)
T KOG0547|consen 406 LLQQYEEAIADFQKAISL----DPE---------------NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC---PE 463 (606)
T ss_pred HHHHHHHHHHHHHHHhhc----Chh---------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC---ch
Confidence 999999999999999999 666 55677889999999999999999999999999999 99
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH-HCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD------DSRLWNRLGASLA-NGNRPEEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pd------naeA~~nLG~ay~-qlGryeEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
++...|.++..++++++|++.|++|+.+.|. ++..+...|.+.. -.+++..|+..+++|++++|..-.++..|
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tl 543 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETL 543 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHH
Confidence 9999999999999999999999999999998 5555666665544 36899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
|.+..++|+.++|+++|++++.+...
T Consensus 544 aq~~lQ~~~i~eAielFEksa~lArt 569 (606)
T KOG0547|consen 544 AQFELQRGKIDEAIELFEKSAQLART 569 (606)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999988655
No 29
>KOG0547|consensus
Probab=99.76 E-value=6.1e-17 Score=193.55 Aligned_cols=290 Identities=13% Similarity=0.099 Sum_probs=249.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
+..+-.+|.-++..|+|++||.+|.+||.+.|+.+..|.+++.+|...|++++-++...++++++|+...+++..+.++.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE 194 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHH------------------HHHHhc-------------CCCCCCC---chhhhhhcCcc----------
Q psy8682 1685 NEACLHDALDTL------------------KDKIRP-------------GQESNPR---PSAYKADALPS---------- 1720 (1956)
Q Consensus 1685 ~lGdydEALe~l------------------eKALel-------------g~e~dPd---~eay~~Ll~~~---------- 1720 (1956)
.+|++++|+... ++.++. ....-|. ...|.......
T Consensus 195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCc
Confidence 999999887532 111111 0011111 00111000000
Q ss_pred ----------------------------------------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1721 ----------------------------------------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1721 ----------------------------------------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
.+...+.++...|..++-.|++..|...++.++.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 1122355566677778889999999999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
++|.. ...|..+|.+|....+.++-...|++|..++|.++.+|+..|.+++-++++++|+..|++++.++|+++.++
T Consensus 355 l~~~~---~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~ 431 (606)
T KOG0547|consen 355 LDPAF---NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAY 431 (606)
T ss_pred cCccc---chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHH
Confidence 99998 677999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
..++.+.+++++++++...|+.+....|+.++++...|.++..++++..++ ..+..|+.+.++
T Consensus 432 iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~-k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 432 IQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAV-KQYDKAIELEPR 494 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHH-HHHHHHHhhccc
Confidence 999999999999999999999999999999999999999999999998888 888999888877
No 30
>KOG1070|consensus
Probab=99.76 E-value=2.4e-17 Score=212.65 Aligned_cols=226 Identities=17% Similarity=0.224 Sum_probs=187.9
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC-C----CCHHHHHHHHhhccCCCCCCCCCChHH
Q psy8682 716 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-P----DFTELLVYLFSSLDFQPPKQKISDPDE 790 (1956)
Q Consensus 716 ~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkf-P----~d~~IWl~ylsfL~~~~~~~ki~d~Ee 790 (1956)
+=|.+.+..+|. ..=+|++|..++..-+++|+||+++++||+.- + ..-.+|+.|+..+. ..+..+.
T Consensus 1445 eDferlvrssPN---SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn------~yG~ees 1515 (1710)
T KOG1070|consen 1445 EDFERLVRSSPN---SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLEN------AYGTEES 1515 (1710)
T ss_pred HHHHHHHhcCCC---cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHH------hhCcHHH
Confidence 448888899887 67889999999999999999999999999853 2 23679999997665 3344444
Q ss_pred hhHHHHH--------------------------HHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccC
Q psy8682 791 LRDYQHR--------------------------KRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844 (1956)
Q Consensus 791 a~~~~~R--------------------------AR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~P 844 (1956)
.....+| |.++|+++++++....++|++|+++.++++..+.||.++.|||...|
T Consensus 1516 l~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1516 LKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence 3333333 56677788888888899999999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc------cCchHHHH
Q psy8682 845 R--NITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS------ISQVTLWL 916 (1956)
Q Consensus 845 k--~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL------~~~~~LWl 916 (1956)
+ ++++-.+++++|.++|+.+|+|++||..+..+|++.++|..||++|.++|+.+.+|.+|||++ .....++.
T Consensus 1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence 8 899999999999999999999999999999999999999999999999999999999999998 34456888
Q ss_pred HHHHhhcccccchHHHHHHHHHHHhccccCccceeeeccccC
Q psy8682 917 GALTLSLEGLGSNLQSWVRFLARDVGECCCGQVVSTVDSEVG 958 (1956)
Q Consensus 917 ~Yi~fEle~~~~~lk~~~r~l~ralkec~~g~~~~~~~~~~~ 958 (1956)
.|+++|.++++..--.+++ +||.. ||+.+.+.+|
T Consensus 1676 kwLeyEk~~Gde~~vE~VK--arA~E------Yv~s~~s~~~ 1709 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYVK--ARAKE------YVESIKSKSG 1709 (1710)
T ss_pred HHHHHHHhcCchhhHHHHH--HHHHH------HHHHhhhccC
Confidence 8888899976655444443 34433 6666666554
No 31
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.75 E-value=3e-18 Score=200.61 Aligned_cols=265 Identities=20% Similarity=0.163 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ--EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel--dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
..+.+|..++..|++++|+..+.+.+.. .|++...|..+|.+....++++.|+..|++++..++.++..+..++.+ .
T Consensus 10 ~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~ 88 (280)
T PF13429_consen 10 EALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence 3457799999999999999999766544 488999999999999999999999999999999999988888888888 7
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCCCC
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC--PSQSID 1762 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~--P~n~~~ 1762 (1956)
..+++++|+.++.++.+. .++ ...+...+.++...++++++...+.++.... +.+
T Consensus 89 ~~~~~~~A~~~~~~~~~~----~~~----------------~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~--- 145 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYER----DGD----------------PRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDS--- 145 (280)
T ss_dssp -------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T----
T ss_pred cccccccccccccccccc----ccc----------------cchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC---
Confidence 899999999999988776 322 1122345577889999999999999987654 344
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|.++...|+.++|+.+|+++++.+|++..+...++.++...|+++++...++...+..|.++..+..+|.++.
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~ 225 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYL 225 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhc
Confidence 88999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccC
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~ 1896 (1956)
.+|++++|+.+|++++..+|+++..+..+|.++...|+..+|. ..+++++..+
T Consensus 226 ~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~-~~~~~~~~~l 278 (280)
T PF13429_consen 226 QLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEAL-RLRRQALRLL 278 (280)
T ss_dssp HHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT--------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-cccccccccc
Confidence 9999999999999999999999999999999999999997776 5555555443
No 32
>PRK12370 invasion protein regulator; Provisional
Probab=99.74 E-value=3e-16 Score=201.20 Aligned_cols=257 Identities=14% Similarity=0.009 Sum_probs=216.6
Q ss_pred cHHHHHHHHHHHHHc---CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC
Q psy8682 1604 NETNAFALGQEKLRQ---GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN---------EQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1604 daeall~LG~aylk~---GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l---------GdyeEALe~yeKALeLdPd 1671 (1956)
++-.++..|..++.. +++++|+.+|+++++++|+++.++..+|.++... +++++|+..++++++++|+
T Consensus 257 da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~ 336 (553)
T PRK12370 257 DSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN 336 (553)
T ss_pred HHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC
Confidence 444566677655544 3578999999999999999999999999987644 3489999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++.++..+|.++...|++++|+..|++++++ +|+ .+.+++.+|.++...|++++|+..+++
T Consensus 337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----~P~---------------~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 337 NPQALGLLGLINTIHSEYIVGSLLFKQANLL----SPI---------------SADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999 777 455678899999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn 1830 (1956)
+++++|.+ +..+..++.+++..|++++|+..+++++... |+++.++..+|.++..+|++++|...++++....|..
T Consensus 398 Al~l~P~~---~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~ 474 (553)
T PRK12370 398 CLKLDPTR---AAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG 474 (553)
T ss_pred HHhcCCCC---hhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh
Confidence 99999998 6666667777888999999999999999875 7889999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHH
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDS 1884 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seA 1884 (1956)
..++..++.+|...|+ +|...+++.++..-..+.-......++.-.|+...+
T Consensus 475 ~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~ 526 (553)
T PRK12370 475 LIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAE 526 (553)
T ss_pred HHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHH
Confidence 9999999999999884 777777776665443333333355555555655443
No 33
>KOG1155|consensus
Probab=99.73 E-value=1.1e-15 Score=182.16 Aligned_cols=280 Identities=19% Similarity=0.210 Sum_probs=238.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------------HHHHcCC
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGI-----------------------------SLAENEQ 1654 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~-----------------------------ay~~lGd 1654 (1956)
|.-.++..|.++.+.|....|+..|..++...|-+-.+|..|+. ++....+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q 242 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQ 242 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHH
Confidence 44588899999999999999999999999988887766655544 3444456
Q ss_pred hHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC----chhhhhhcCcc----hhhhh
Q psy8682 1655 DPQAIAALSKCLSI-EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR----PSAYKADALPS----KLTRL 1725 (1956)
Q Consensus 1655 yeEALe~yeKALeL-dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd----~eay~~Ll~~~----Kl~e~ 1725 (1956)
.++|+.-++..+.. .|.+.-.-...|.++....++++|+..|+...+. +|- .+.|..++-.. ++.-+
T Consensus 243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~kn----DPYRl~dmdlySN~LYv~~~~skLs~L 318 (559)
T KOG1155|consen 243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKN----DPYRLDDMDLYSNVLYVKNDKSKLSYL 318 (559)
T ss_pred HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc----CCCcchhHHHHhHHHHHHhhhHHHHHH
Confidence 67777777777776 6888878888999999999999999999999998 775 23333332111 11111
Q ss_pred H-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1726 A-----------NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1726 a-----------~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
+ ...--+|+.|...++.++|+.+|++|++++|.. ..+|..+|.-|..+++...|+..|++|++++|
T Consensus 319 A~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~---~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 319 AQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKY---LSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcch---hHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 1 112235788888999999999999999999998 99999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.+..+|+.||.+|.-++-..=|+-+|++|++..|++...|..||.||.++++.++|+++|.+|+.....+..++..+|.+
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcccHHHHHHHHH
Q psy8682 1875 PRAVKEMSDSIWYSLR 1890 (1956)
Q Consensus 1875 ~~~lg~~seAIws~Lr 1890 (1956)
+..+++..+|...+-+
T Consensus 476 ye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHhHHHHHHHHHH
Confidence 9999999998844443
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.72 E-value=2.4e-15 Score=165.10 Aligned_cols=204 Identities=15% Similarity=0.105 Sum_probs=145.2
Q ss_pred CccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681 (1956)
Q Consensus 1602 ~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~ 1681 (1956)
...+..++.+|..+...|++++|+..++++++.+|++..++..+|.++...|++++|+..|+++++..|.+..++..+|.
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 107 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGT 107 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 33567888899999999999999999999999999888899999999999999999999999999998888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCC
Q psy8682 1682 CFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI 1761 (1956)
Q Consensus 1682 aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~ 1761 (1956)
++...|++++|+..+++++.. .+. +.....+..+|.++...|++++|...+.+++...|.+
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~----~~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 168 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIED----PLY-------------PQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQR-- 168 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhc----ccc-------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC--
Confidence 888888888888888888765 111 1122234455666666666666666666666666555
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1762 ~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
..++..+|.++...|++++|+..+++++...|.++..+..++.++...|+.++|..+.+.+..
T Consensus 169 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 169 -PESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 555555666666666666666666665555555555555555555555555555555544443
No 35
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.72 E-value=1.1e-15 Score=181.67 Aligned_cols=236 Identities=14% Similarity=0.020 Sum_probs=181.9
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe 1660 (1956)
.+.++.. +.+++...+.+|...+..++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+.
T Consensus 42 ~e~~i~~--~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 42 QEVILAR--LNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred HHHHHHH--HHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 3445554 56666555556665688999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC
Q psy8682 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740 (1956)
Q Consensus 1661 ~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG 1740 (1956)
.|+++++++|++..++.++|.++...|++++|++.++++++. +|+ ... ...+ ..+....+
T Consensus 120 ~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~----~P~---~~~----------~~~~---~~l~~~~~ 179 (296)
T PRK11189 120 AFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD----DPN---DPY----------RALW---LYLAESKL 179 (296)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---CHH----------HHHH---HHHHHccC
Confidence 999999999999999999999999999999999999999999 887 110 0011 12344578
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA-------LQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA-------Lel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
++++|+..+.+++...+.. .+. .+.++...|+..++ ..++.+ .++.|....+|+++|.++..+|++
T Consensus 180 ~~~~A~~~l~~~~~~~~~~-----~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~ 252 (296)
T PRK11189 180 DPKQAKENLKQRYEKLDKE-----QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDL 252 (296)
T ss_pred CHHHHHHHHHHHHhhCCcc-----ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCH
Confidence 8999999998877554332 121 34555566665443 233333 355566778899999999999999
Q ss_pred HHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHcC
Q psy8682 1814 EEAVEAYHTALQLSP-GFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1814 eEAie~yeKALeL~P-dnaeA~~~LA~ay~klG 1845 (1956)
++|+.+|+++++.+| ++.+..+.+.......+
T Consensus 253 ~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~~ 285 (296)
T PRK11189 253 DEAAALFKLALANNVYNFVEHRYALLELALLGQ 285 (296)
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHh
Confidence 999999999999886 66666665555544433
No 36
>KOG1173|consensus
Probab=99.72 E-value=6e-16 Score=188.39 Aligned_cols=273 Identities=16% Similarity=0.155 Sum_probs=235.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+.+.....+..++..++|.+..+.++..++.+|-+..++-..-.++...|+..+-...-.+.++..|+.+..|+..|..|
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YY 322 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYY 322 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHH
Confidence 45688889999999999999999999999999988877665555888888888877777888888999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|++.+|.++|.++..+ +|. .+.+|...|..+...|..++|+.+|..|.++.|.. .
T Consensus 323 l~i~k~seARry~SKat~l----D~~---------------fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~---h 380 (611)
T KOG1173|consen 323 LMIGKYSEARRYFSKATTL----DPT---------------FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC---H 380 (611)
T ss_pred HHhcCcHHHHHHHHHHhhc----Ccc---------------ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC---c
Confidence 9999999999999999988 666 44567788899999999999999999999998887 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-------cHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------FVRARYN 1836 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-------naeA~~~ 1836 (1956)
.....+|.-|..+++++-|.+.|.+|+.+.|.++.++..+|.+.+..+.|.+|..+|+.++..-+. ....+.+
T Consensus 381 lP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 381 LPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred chHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 667778888888999999999999999999999999999999999999999999999998853221 3346889
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
||.++.+++++++|+.+|+++|.+.|.++.++..+|.++..+|+...|| +++.+++.+-+..
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Ai-d~fhKaL~l~p~n 522 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAI-DHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHH-HHHHHHHhcCCcc
Confidence 9999999999999999999999999999999999999999999998888 8888888887765
No 37
>KOG4162|consensus
Probab=99.71 E-value=2.9e-15 Score=187.38 Aligned_cols=367 Identities=20% Similarity=0.176 Sum_probs=274.0
Q ss_pred hhhhhhchhhhhh--ccccccC--CCCCCCCcccccccccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCC
Q psy8682 1464 GIHICGRQSYAER--NQCFCFG--PGKAQTGPLFSNGVASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGV 1539 (1956)
Q Consensus 1464 ~~~~~~~~~~ae~--~~c~~~~--p~~a~~~~lf~~a~aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~ 1539 (1956)
++..||..+.|+. ..|.... |.+ +...++..++| +++++.+.+++....+..+.......
T Consensus 366 s~saag~~s~Av~ll~~~~~~~~~ps~-~s~~Lmasklc----------~e~l~~~eegldYA~kai~~~~~~~~----- 429 (799)
T KOG4162|consen 366 SYSAAGSDSKAVNLLRESLKKSEQPSD-ISVLLMASKLC----------IERLKLVEEGLDYAQKAISLLGGQRS----- 429 (799)
T ss_pred HHHHhccchHHHHHHHhhcccccCCCc-chHHHHHHHHH----------HhchhhhhhHHHHHHHHHHHhhhhhh-----
Confidence 4556677777777 5576666 555 66667777778 78899999999986654332210000
Q ss_pred cCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC
Q psy8682 1540 STSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG 1619 (1956)
Q Consensus 1540 s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G 1619 (1956)
.+...-.-.+.-++..+..... .....-....+++.. ++++.++++.||. +.|.++..|..++
T Consensus 430 -------~l~~~~~l~lGi~y~~~A~~a~----~~seR~~~h~kslqa--le~av~~d~~dp~----~if~lalq~A~~R 492 (799)
T KOG4162|consen 430 -------HLKPRGYLFLGIAYGFQARQAN----LKSERDALHKKSLQA--LEEAVQFDPTDPL----VIFYLALQYAEQR 492 (799)
T ss_pred -------hhhhhHHHHHHHHHHhHhhcCC----ChHHHHHHHHHHHHH--HHHHHhcCCCCch----HHHHHHHHHHHHH
Confidence 0011111122222222222110 122222345677777 9999999999887 9999999999999
Q ss_pred ChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQ-EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1620 dydEAIe~fekALel-dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
+.+.|..+.++++++ ..+++.+|..++.++...+++.+|+...+.+++..|+|.........+-...++.++|+..+..
T Consensus 493 ~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~ 572 (799)
T KOG4162|consen 493 QLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH 572 (799)
T ss_pred hHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence 999999999999999 4567999999999999999999999999999999999888777777777788899999888877
Q ss_pred HHhcCC------------------------CCCCC--chhhhhhcC---c--------chh-------------hhhHHH
Q psy8682 1699 KIRPGQ------------------------ESNPR--PSAYKADAL---P--------SKL-------------TRLANH 1728 (1956)
Q Consensus 1699 ALelg~------------------------e~dPd--~eay~~Ll~---~--------~Kl-------------~e~a~a 1728 (1956)
.+..-. ..+|. ...+..+.. . .++ ......
T Consensus 573 ~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~l 652 (799)
T KOG4162|consen 573 KLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKL 652 (799)
T ss_pred HHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHH
Confidence 665510 00111 001111000 0 000 112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
+...+..+...+..++|..++.++-+++|.. +.+|+..|.++...|+..+|.+.|..|+.++|++..+...+|.++.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~---~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASKIDPLS---ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHhcchhh---HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 5567888888899999999999999998887 8899999999999999999999999999999999999999999999
Q ss_pred HCCChHHHHH--HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1809 NGNRPEEAVE--AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1809 qlGryeEAie--~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+.|+..-|.. .+..+++++|.+.++|+++|.++.++|+.++|.++|+.|+++++.+|.
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 9998888887 999999999999999999999999999999999999999999888774
No 38
>KOG1173|consensus
Probab=99.71 E-value=8.1e-16 Score=187.25 Aligned_cols=273 Identities=21% Similarity=0.194 Sum_probs=236.8
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
.....+|.+.... .+..+.++|-++. -..+.+| ++...|+..+-..+-.+.++.+|+.+..|+..|..|...|+
T Consensus 254 ~y~~c~f~~c~ki--t~~lle~dpfh~~---~~~~~ia-~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k 327 (611)
T KOG1173|consen 254 LYYGCRFKECLKI--TEELLEKDPFHLP---CLPLHIA-CLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK 327 (611)
T ss_pred HHHcChHHHHHHH--hHHHHhhCCCCcc---hHHHHHH-HHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC
Confidence 3344566666665 5555655554443 2444566 88899999988888899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
+.+|..+|.++..++|....+|...|..|...|..++|+.+|..|-++ -|. .-...+.+|.
T Consensus 328 ~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl----~~G---------------~hlP~LYlgm 388 (611)
T KOG1173|consen 328 YSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL----MPG---------------CHLPSLYLGM 388 (611)
T ss_pred cHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh----ccC---------------CcchHHHHHH
Confidence 999999999999999999999999999999999999999999999998 443 2223567899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C---CHHHHHHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP----D---DSRLWNRLGASL 1807 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P----d---naeA~~nLG~ay 1807 (1956)
-|...++++-|.+.|.+|+.+.|.+ +.++..+|.+.+..+.|.+|..+|+.++..-+ . -...+.+||.++
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~D---plv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~ 465 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSD---PLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY 465 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCc---chhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence 9999999999999999999999999 99999999999999999999999999994322 1 235689999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
.+++++++|+.+|+++|.+.|.+..++..+|.+|..+|+++.|+++|.+||.++|++.-+--.|+...
T Consensus 466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999876655555433
No 39
>KOG0624|consensus
Probab=99.71 E-value=1.5e-15 Score=175.39 Aligned_cols=286 Identities=15% Similarity=0.149 Sum_probs=222.5
Q ss_pred CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1600 NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
+|. +++-.+.+|..++..|++.+|+..|..|++.+|++..+++..|.+|..+|+-..|+..+.+.|++.|+...+....
T Consensus 34 ~~a-dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQR 112 (504)
T KOG0624|consen 34 SPA-DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQR 112 (504)
T ss_pred CHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHh
Confidence 444 7889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCC----chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRPGQESNPR----PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALelg~e~dPd----~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
|.++.++|++++|...|++.+.. +|+ .+.+..+. +......+......+...|++..|+++....+++
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~----~~s~~~~~eaqskl~----~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi 184 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQH----EPSNGLVLEAQSKLA----LIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI 184 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhc----CCCcchhHHHHHHHH----hHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc
Confidence 99999999999999999999999 775 22333332 1112222333445556677777777777777777
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH--
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-- 1833 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-- 1833 (1956)
.|-+ +..+...+.+|...|+...|+..++.+-++..++.+.++.++.+++..|+.+.++...+++++++|+....
T Consensus 185 ~~Wd---a~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~ 261 (504)
T KOG0624|consen 185 QPWD---ASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFP 261 (504)
T ss_pred Ccch---hHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHH
Confidence 7766 77777777777777777777777777777777777777777777777777777777777777777663221
Q ss_pred ------------------------------------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1834 ------------------------------------------------RYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1834 ------------------------------------------------~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
...+..|+..-|++.+|+....++|.++|++.
T Consensus 262 ~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv 341 (504)
T KOG0624|consen 262 FYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDV 341 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHH
Confidence 22344566666778888888888888888888
Q ss_pred hchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1866 DGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1866 dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
+++..++..|.....|.++| ..+..|...-..
T Consensus 342 ~~l~dRAeA~l~dE~YD~AI-~dye~A~e~n~s 373 (504)
T KOG0624|consen 342 QVLCDRAEAYLGDEMYDDAI-HDYEKALELNES 373 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHH-HHHHHHHhcCcc
Confidence 88888888887777777777 555666555544
No 40
>PRK12370 invasion protein regulator; Provisional
Probab=99.71 E-value=1.6e-15 Score=194.56 Aligned_cols=251 Identities=12% Similarity=0.010 Sum_probs=212.5
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQ---------GDLPSAILYLEAAAKQEPDNAEVWLSLGISL 1649 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~---------GdydEAIe~fekALeldPdnaeAl~~LA~ay 1649 (1956)
+.+++|+.. |+++++++|+++. ++..+|.++... +++++|+..++++++++|+++.++..+|.++
T Consensus 275 ~~~~~A~~~--~~~Al~ldP~~a~----a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~ 348 (553)
T PRK12370 275 YSLQQALKL--LTQCVNMSPNSIA----PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLIN 348 (553)
T ss_pred HHHHHHHHH--HHHHHhcCCccHH----HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467788888 9999988877654 888888876643 3489999999999999999999999999999
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1650 AENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1650 ~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
...|++++|+..|+++++++|+++.+++.+|.++...|++++|+..+++++++ +|. . ...+
T Consensus 349 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l----~P~---~------------~~~~ 409 (553)
T PRK12370 349 TIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL----DPT---R------------AAAG 409 (553)
T ss_pred HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC---C------------hhhH
Confidence 99999999999999999999999999999999999999999999999999999 777 1 1122
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQC-PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~-P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
..++.++...|++++|+..++++++.. |++ +.++..+|.++..+|++++|+..+.++....|....++..++..|.
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~---~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDN---PILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYC 486 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccC---HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHh
Confidence 334556777899999999999999886 666 8889999999999999999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
..|+ +|...+++.++...........++.+|.-.|+.+.|... +++.+.
T Consensus 487 ~~g~--~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 487 QNSE--RALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred ccHH--HHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 9884 788878777664433333333488888888998888777 666554
No 41
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.70 E-value=5.5e-15 Score=162.29 Aligned_cols=205 Identities=16% Similarity=0.121 Sum_probs=186.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.+..+..+|.++...|++++|+..++++++.+|++..++..+|.++...|++++|+..++++++. .|.
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~-------- 97 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPN-------- 97 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC--------
Confidence 36789999999999999999999999999999999999999999999999999999999999998 555
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
....+.++|.++...|++++|+..+.+++...+.. .....+..+|.++...|++++|...+++++...|++.
T Consensus 98 -------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 98 -------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP-QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred -------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 23457788999999999999999999999864322 2367889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.++..+|.++...|++++|+..+++++...|.+...+..++.++...|+.++|..+.+.+....|
T Consensus 170 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (234)
T TIGR02521 170 ESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP 234 (234)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 99999999999999999999999999999888899999999999999999999999888776654
No 42
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.69 E-value=3.5e-15 Score=177.34 Aligned_cols=230 Identities=13% Similarity=0.078 Sum_probs=186.8
Q ss_pred cCChHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEP----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldP----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
.+..+.++..+.+++...| ..+..++.+|.+|...|++++|+..|+++++++|+++.+++.+|.++...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3567889999999996443 337789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly 1773 (1956)
..|++++++ +|+ ...++.++|.++...|++++|++.++++++.+|++ +... ....+.
T Consensus 119 ~~~~~Al~l----~P~---------------~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~---~~~~-~~~~l~ 175 (296)
T PRK11189 119 EAFDSVLEL----DPT---------------YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND---PYRA-LWLYLA 175 (296)
T ss_pred HHHHHHHHh----CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHH-HHHHHH
Confidence 999999999 777 34567889999999999999999999999999998 4211 112234
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH-------HhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA-------LQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA-------LeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
...+++++|+..|.+++...+.. .|. .+.++..+|+..++ ..+..+ +++.|...++|+++|.++.++|+
T Consensus 176 ~~~~~~~~A~~~l~~~~~~~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~ 251 (296)
T PRK11189 176 ESKLDPKQAKENLKQRYEKLDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGD 251 (296)
T ss_pred HccCCHHHHHHHHHHHHhhCCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999998877554322 222 46666777777554 233333 35667778899999999999999
Q ss_pred HHHHHHHHHHHHHhcC-CChhchhccccc
Q psy8682 1847 NTQAVEHFLTALNQQA-ATHDGLTPHGLE 1874 (1956)
Q Consensus 1847 yEEAie~yekALeLdP-dn~dA~~~LG~l 1874 (1956)
+++|+.+|++|++++| ++.+..+.+..+
T Consensus 252 ~~~A~~~~~~Al~~~~~~~~e~~~~~~e~ 280 (296)
T PRK11189 252 LDEAAALFKLALANNVYNFVEHRYALLEL 280 (296)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 9999999999999997 666666555443
No 43
>KOG2002|consensus
Probab=99.68 E-value=7.5e-15 Score=186.85 Aligned_cols=351 Identities=18% Similarity=0.170 Sum_probs=216.9
Q ss_pred chhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHH-----HHHHHHHHHHHhcCCCCCChhhhhh--
Q psy8682 1507 NTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWN-----ELNSHWKEMTESLGSGESLPHQWFS-- 1579 (1956)
Q Consensus 1507 n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWd-----kLq~~we~l~kr~~s~~~~a~~WL~-- 1579 (1956)
.+..+.++|-.|+..|+.+.... ++..+.+.+ +..-+||. .+...|.....-+. ..+.+..-|+
T Consensus 172 ~i~ynkkdY~~al~yyk~al~in---p~~~aD~rI-----gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~ 242 (1018)
T KOG2002|consen 172 RIAYNKKDYRGALKYYKKALRIN---PACKADVRI-----GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEV 242 (1018)
T ss_pred HHHhccccHHHHHHHHHHHHhcC---cccCCCccc-----hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHH
Confidence 56778889999999977644333 222221111 11345665 44445555544331 1112222233
Q ss_pred --------hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---CHHHHHHHHHH
Q psy8682 1580 --------DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD---NAEVWLSLGIS 1648 (1956)
Q Consensus 1580 --------dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPd---naeAl~~LA~a 1648 (1956)
.|..++.. +.+++...+.||. ++..++..++-.|+|..+..+...++..... -++.++.+|.+
T Consensus 243 ~l~~~d~~s~~~~~~l--l~~ay~~n~~nP~----~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs 316 (1018)
T KOG2002|consen 243 DLNFNDSDSYKKGVQL--LQRAYKENNENPV----ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRS 316 (1018)
T ss_pred HHHccchHHHHHHHHH--HHHHHhhcCCCcH----HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33455555 7788888888887 8899999999999999999999999876533 35679999999
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch--------hhhhhcCc
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEPKN-LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS--------AYKADALP 1719 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdPdn-aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e--------ay~~Ll~~ 1719 (1956)
|..+|+|++|..+|.++++.++++ .-.++.+|..|...|+++.|..+|++.+.. .|+.. .|......
T Consensus 317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~----~p~~~etm~iLG~Lya~~~~~ 392 (1018)
T KOG2002|consen 317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ----LPNNYETMKILGCLYAHSAKK 392 (1018)
T ss_pred HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh----CcchHHHHHHHHhHHHhhhhh
Confidence 999999999999999999999888 667889999999999999999999999988 77610 01110000
Q ss_pred c---------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1720 S---------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1720 ~---------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n--~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
. ..+....++..+|.++....-+. ++.+|..|+..--.. .+.+.+++++|..++..|++.+|
T Consensus 393 ~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A 471 (1018)
T KOG2002|consen 393 QEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA 471 (1018)
T ss_pred hHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence 0 01334445555555554333332 355555555321110 13355566666666666666666
Q ss_pred HHHHHHHHHh-----CCCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1783 VDCFRSALQV-----RPDD-----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852 (1956)
Q Consensus 1783 ie~fekALel-----~Pdn-----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie 1852 (1956)
...|..|+.. +++. ....+++|.++...++++.|.+.|...++..|.+..++..||......+...+|..
T Consensus 472 ~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~ 551 (1018)
T KOG2002|consen 472 LEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASL 551 (1018)
T ss_pred HHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHH
Confidence 6666666554 1111 12355666666666666666666666666666666666666655555556666666
Q ss_pred HHHHHHHhcCCChhchhccccchhh
Q psy8682 1853 HFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1853 ~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
.+..++..+..+++++..+|.++..
T Consensus 552 ~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 552 LLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHHHHhcccCCcHHHHHHHHHHHh
Confidence 6666666666666666666655543
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.5e-16 Score=186.42 Aligned_cols=261 Identities=19% Similarity=0.163 Sum_probs=122.9
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.+++++|+.. +.+..... ..|. +...|..+|......++++.|+..|++++..++.++..+..++.+ ...+
T Consensus 17 ~~~~~~~~~~Al~~--L~~~~~~~-~~~~-~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 17 LLYQRGDYEKALEV--LKKAAQKI-APPD-DPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccc--cccccccc-cccc-ccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence 34445678888877 54433221 0122 455888899999999999999999999999999988888888888 7999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA 1733 (1956)
++++|+.++.++.+..+ ++..+..+..++...++++++...++++... .+ .+.....+..+|
T Consensus 92 ~~~~A~~~~~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~----~~-------------~~~~~~~~~~~a 153 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDG-DPRYLLSALQLYYRLGDYDEAEELLEKLEEL----PA-------------APDSARFWLALA 153 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-----T----------------T-HHHHHHHH
T ss_pred ccccccccccccccccc-ccchhhHHHHHHHHHhHHHHHHHHHHHHHhc----cC-------------CCCCHHHHHHHH
Confidence 99999999999988664 4666777888899999999999999998765 11 123556678899
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.++...|+.++|+.+|+++++.+|++ ..+...++.++...|+++++...+....+..|.++..+..+|.++..+|++
T Consensus 154 ~~~~~~G~~~~A~~~~~~al~~~P~~---~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~ 230 (280)
T PF13429_consen 154 EIYEQLGDPDKALRDYRKALELDPDD---PDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY 230 (280)
T ss_dssp HHHHHCCHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999 999999999999999999999999999888899999999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
++|+.+|+++++.+|+++..+..+|.++...|+.++|..++++++..
T Consensus 231 ~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~ 277 (280)
T PF13429_consen 231 EEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALRL 277 (280)
T ss_dssp HHHHHHHHHHHHHSTT-HHHHHHHHHHHT------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999998764
No 45
>KOG2002|consensus
Probab=99.68 E-value=2.6e-15 Score=190.90 Aligned_cols=277 Identities=14% Similarity=0.183 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
.++..|.+.+..|+|..|+.+|++++.++|.. ++....+|.|+.++|+.+.|+..|.++++++|.++.++..||.+-..
T Consensus 166 ~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~ 245 (1018)
T KOG2002|consen 166 ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLN 245 (1018)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence 45555555555555555555555555555432 33444455555555555555555555555555555555444444333
Q ss_pred cC---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcC-------------------------cchhhhhHHHHHHHHHHHH
Q psy8682 1686 EA---CLHDALDTLKDKIRPGQESNPRPSAYKADAL-------------------------PSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1686 lG---dydEALe~leKALelg~e~dPd~eay~~Ll~-------------------------~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
.. .+..++..+.++... ++. ...+.. .......+..++.+|.+|.
T Consensus 246 ~~d~~s~~~~~~ll~~ay~~----n~~---nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 246 FNDSDSYKKGVQLLQRAYKE----NNE---NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred ccchHHHHHHHHHHHHHHhh----cCC---CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 22 233444444444444 222 000000 0001123444555555555
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----Ch
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN----RP 1813 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG----ry 1813 (1956)
.+|++++|..+|.++++.++++ ....++.+|.+|+..|+++.|+.+|+++++..|++.++...||.+|...+ ..
T Consensus 319 a~Gd~ekA~~yY~~s~k~~~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~ 396 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKADNDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKR 396 (1018)
T ss_pred hhccHHHHHHHHHHHHccCCCC--ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHH
Confidence 5555555555555555555443 12334455555555555555555555555555555555555555554443 34
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----cCCChhchhccccchhhhcccHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ-----QAATHDGLTPHGLEPRAVKEMSDSIWYS 1888 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL-----dPdn~dA~~~LG~l~~~lg~~seAIws~ 1888 (1956)
+.|..+..++++..|.+.++|..+|.++....-+.. +.+|..|+.+ .+=-++.++++|.+++..|++..|. ..
T Consensus 397 d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~-~~ 474 (1018)
T KOG2002|consen 397 DKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL-EH 474 (1018)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH-HH
Confidence 445555555555555555555555555443332222 5555555422 1222344555555555555554444 44
Q ss_pred HHhccc
Q psy8682 1889 LRGFHP 1894 (1956)
Q Consensus 1889 Lr~Al~ 1894 (1956)
+..|+.
T Consensus 475 f~~A~~ 480 (1018)
T KOG2002|consen 475 FKSALG 480 (1018)
T ss_pred HHHHhh
Confidence 444433
No 46
>KOG1129|consensus
Probab=99.66 E-value=2.2e-15 Score=173.23 Aligned_cols=244 Identities=17% Similarity=0.152 Sum_probs=226.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACL 1689 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy 1689 (1956)
.+|.+|+..|-+.+|...++.++...| .++.+..|+.+|.+.++...|+..|...++..|.+...+..+|.++..++++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~ 306 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ 306 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH
Confidence 589999999999999999999998876 6889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy8682 1690 HDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL 1769 (1956)
Q Consensus 1690 dEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~L 1769 (1956)
++|+++|+.+++. +|. .. ++...+|..|+..++.+-|+.+|++.+.+.-.+ ++.++++
T Consensus 307 ~~a~~lYk~vlk~----~~~---nv------------EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~s---peLf~Ni 364 (478)
T KOG1129|consen 307 EDALQLYKLVLKL----HPI---NV------------EAIACIAVGYFYDNNPEMALRYYRRILQMGAQS---PELFCNI 364 (478)
T ss_pred HHHHHHHHHHHhc----CCc---cc------------eeeeeeeeccccCCChHHHHHHHHHHHHhcCCC---hHHHhhH
Confidence 9999999999999 666 22 223446788899999999999999999999888 9999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRP---DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~P---dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
|.+.+..++++-++..|++|+.... .-+++|+++|.+....|++..|.++|+-++..++++.+++.+||.+-.+.|+
T Consensus 365 gLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 365 GLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCc
Confidence 9999999999999999999998754 2468999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1847 yEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.++|..++..|-.+.|+-.+..++++.+-.
T Consensus 445 i~~Arsll~~A~s~~P~m~E~~~Nl~~~s~ 474 (478)
T KOG1129|consen 445 ILGARSLLNAAKSVMPDMAEVTTNLQFMSV 474 (478)
T ss_pred hHHHHHHHHHhhhhCccccccccceeEEee
Confidence 999999999999999999999888887543
No 47
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.66 E-value=2.6e-14 Score=176.96 Aligned_cols=294 Identities=14% Similarity=0.086 Sum_probs=221.7
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCChH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA-EVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdna-eAl~~LA~ay~~lGdye 1656 (1956)
-++|+.|... ..++.+..+. ....++..|.++..+|+++.|..+|.++.+..|++. .+....+.++...|+++
T Consensus 97 ~g~~~~A~~~--l~~~~~~~~~----~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 97 EGDYAKAEKL--IAKNADHAAE----PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred CCCHHHHHHH--HHHHhhcCCC----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 4567777776 5555544332 344777889999999999999999999999999875 46666799999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
+|+..++++++..|+++.++..++.+|...|++++|.+.+.+..+. .... ..............+
T Consensus 171 ~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~----~~~~-----------~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 171 AARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA----GLFD-----------DEEFADLEQKAEIGL 235 (409)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc----CCCC-----------HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999877 2110 000111111222222
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHCCCh
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW--NRLGASLANGNRP 1813 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~--~nLG~ay~qlGry 1813 (1956)
...+..+++.+.+.++....|.. ...+.++..+|..+...|++++|...++++++..|++.... ..........++.
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~ 315 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDN 315 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCCh
Confidence 34444555566777777777731 11278888888888999999999999999999888876532 2233333445778
Q ss_pred HHHHHHHHHHHhhCCCcH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHHhcCCChhchhccccchhhhcccHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFV--RARYNLGITCVHLGANTQAVEHFL--TALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSL 1889 (1956)
Q Consensus 1814 eEAie~yeKALeL~Pdna--eA~~~LA~ay~klGdyEEAie~ye--kALeLdPdn~dA~~~LG~l~~~lg~~seAIws~L 1889 (1956)
+.+++.++++++..|+++ ..+..+|.++.+.|++++|.++|+ .+++..|++.. +..+|.++...|+..++. .++
T Consensus 316 ~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~-~~~ 393 (409)
T TIGR00540 316 EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAA-AMR 393 (409)
T ss_pred HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHH
Confidence 888889999999899888 788888999999999999999998 57778887665 558888888888876665 666
Q ss_pred Hhccc
Q psy8682 1890 RGFHP 1894 (1956)
Q Consensus 1890 r~Al~ 1894 (1956)
++++.
T Consensus 394 ~~~l~ 398 (409)
T TIGR00540 394 QDSLG 398 (409)
T ss_pred HHHHH
Confidence 65543
No 48
>KOG0548|consensus
Probab=99.65 E-value=2.2e-14 Score=174.67 Aligned_cols=293 Identities=15% Similarity=0.193 Sum_probs=204.0
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.++.-+++|++|+.. -.+..++.|.-|. .|..+|.++.-.|+|++|+..|.+.|+.+|++...+.+++.++...
T Consensus 44 aa~a~~~~~~~al~d--a~k~~~l~p~w~k----gy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~ 117 (539)
T KOG0548|consen 44 AAYASLGSYEKALKD--ATKTRRLNPDWAK----GYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED 117 (539)
T ss_pred HHHHHHhhHHHHHHH--HHHHHhcCCchhh----HHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH
Confidence 456667778887776 5666777666655 8888888888888888888888888888888777666666655211
Q ss_pred CC---------------------hHHHHHHHHHHHHh---C---------------------------------------
Q psy8682 1653 EQ---------------------DPQAIAALSKCLSI---E--------------------------------------- 1669 (1956)
Q Consensus 1653 Gd---------------------yeEALe~yeKALeL---d--------------------------------------- 1669 (1956)
-. +-..-..|...++. +
T Consensus 118 ~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~ 197 (539)
T KOG0548|consen 118 YAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASM 197 (539)
T ss_pred HHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCC
Confidence 00 00000001100000 0
Q ss_pred --CC---------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc------
Q psy8682 1670 --PK---------------------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS------ 1720 (1956)
Q Consensus 1670 --Pd---------------------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~------ 1720 (1956)
|. .......+|+..+...++..|++.|..++.+ + ....|.......
T Consensus 198 ~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el----~-~~it~~~n~aA~~~e~~~ 272 (539)
T KOG0548|consen 198 AEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL----A-TDITYLNNIAAVYLERGK 272 (539)
T ss_pred CCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH----h-hhhHHHHHHHHHHHhccH
Confidence 00 0012345566666666666666666666665 3 111111000000
Q ss_pred --------------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--C-------------------
Q psy8682 1721 --------------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS--Q------------------- 1759 (1956)
Q Consensus 1721 --------------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~--n------------------- 1759 (1956)
.....+.+...+|..|...++++.|+.+|.+++..... .
T Consensus 273 ~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~ 352 (539)
T KOG0548|consen 273 YAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAY 352 (539)
T ss_pred HHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 00123334455788899999999999999999765432 1
Q ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1760 --SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1760 --~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
+....--...|..++..|+|..|+..|.+|+..+|+++.+|.+.|.||.++|.+..|+...+++++++|++..+|...
T Consensus 353 ~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RK 432 (539)
T KOG0548|consen 353 INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRK 432 (539)
T ss_pred hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 001223344588899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
|.++..+.+|++|++.|+++++++|++.++.-.+..+..
T Consensus 433 g~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 433 GAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 999999999999999999999999998876655555444
No 49
>KOG1840|consensus
Probab=99.64 E-value=3e-14 Score=178.36 Aligned_cols=253 Identities=17% Similarity=0.155 Sum_probs=214.7
Q ss_pred ccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1598 p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
...|. ...+...+|..|..+|+|+.|+..++.+++. .|.-......+|.+|..++++.+|+..|++|+.+.
T Consensus 193 ~~~P~-~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~ 271 (508)
T KOG1840|consen 193 DEDPE-RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIR 271 (508)
T ss_pred cCCch-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 34454 5567777999999999999999999999988 45555566679999999999999999999999863
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC
Q psy8682 1670 --------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI 1741 (1956)
Q Consensus 1670 --------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd 1741 (1956)
|..+.++.+||.+|...|++++|..++++++++ +....... .++.+..+.+++.++...++
T Consensus 272 e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------~~~~~~~~-~~~v~~~l~~~~~~~~~~~~ 340 (508)
T KOG1840|consen 272 EEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------YEKLLGAS-HPEVAAQLSELAAILQSMNE 340 (508)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------HHHhhccC-hHHHHHHHHHHHHHHHHhcc
Confidence 445568999999999999999999999999999 66543222 57788888999999999999
Q ss_pred HHHHHHHHHHHHHhCC-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHH
Q psy8682 1742 HQQVLSLYLNAARQCP-----SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1742 yeEAle~LekALel~P-----~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~--------PdnaeA~~nLG~ay~ 1808 (1956)
+++|..++++++++.- .+...+..+.+||.+|..+|+|++|.+.|++|+.+. +.....+.++|..|.
T Consensus 341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~ 420 (508)
T KOG1840|consen 341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE 420 (508)
T ss_pred hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence 9999999999988743 112346789999999999999999999999999875 223567889999999
Q ss_pred HCCChHHHHHHHHHHHhh-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1809 NGNRPEEAVEAYHTALQL-------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL-------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
+.+++.+|...|.+++.+ .|+....+.+||.+|..+|++++|+++.++++....
T Consensus 421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 999999999999999875 345567899999999999999999999999986543
No 50
>KOG2076|consensus
Probab=99.64 E-value=7.1e-14 Score=177.45 Aligned_cols=303 Identities=17% Similarity=0.172 Sum_probs=226.8
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
+++++|... +..++..+|.++. +|+.+|.+|..+|+..+|....-.|-.++|.+.+.|..++....++|++.+|
T Consensus 153 g~~eeA~~i--~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 153 GDLEEAEEI--LMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred CCHHHHHHH--HHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHH
Confidence 678888887 7788877777666 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc--------h---------
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--------K--------- 1721 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~--------K--------- 1721 (1956)
.-+|.+|++.+|.+.......+.+|.+.|+...|...|.+++.. .|. ..+....... .
T Consensus 227 ~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~-~d~er~~d~i~~~~~~~~~~~~~e~a~~ 301 (895)
T KOG2076|consen 227 RYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPP-VDIERIEDLIRRVAHYFITHNERERAAK 301 (895)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCc-hhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999 773 1111111000 0
Q ss_pred ----------hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------------C--CCC-CCCHHH-
Q psy8682 1722 ----------LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----------------------C--PSQ-SIDPDV- 1765 (1956)
Q Consensus 1722 ----------l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel----------------------~--P~n-~~~a~a- 1765 (1956)
.......+..++.+++....++.|.......... . |+. .....+
T Consensus 302 ~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~ 381 (895)
T KOG2076|consen 302 ALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI 381 (895)
T ss_pred HHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH
Confidence 0000111233445555555555555554444330 0 000 011112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRP-DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-FVRARYNLGITCVH 1843 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~P-dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-naeA~~~LA~ay~k 1843 (1956)
+..++.+..+.++..+++..+..--...+ +++..+..++.+|...|++.+|+.+|..+....+. +..+|+.+|.||..
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~ 461 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME 461 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence 33333333333444444433322211112 35678999999999999999999999999886554 56799999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+|.+++|+++|++++.+.|++.++...|+.++.++|+.++++ .++....
T Consensus 462 l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~Ekal-EtL~~~~ 510 (895)
T KOG2076|consen 462 LGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKAL-ETLEQII 510 (895)
T ss_pred HhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHH-HHHhccc
Confidence 999999999999999999999999999999999999998776 6666544
No 51
>KOG0548|consensus
Probab=99.64 E-value=1.5e-14 Score=176.16 Aligned_cols=316 Identities=15% Similarity=0.153 Sum_probs=240.4
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.--++|+.|+.. |..++.++|.|.. .+-++..+|...|+|++|+..-.+.++++|+-+..|..+|..+.-+|+|
T Consensus 13 ~s~~d~~~ai~~--~t~ai~l~p~nhv----lySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 13 FSSGDFETAIRL--FTEAIMLSPTNHV----LYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred cccccHHHHHHH--HHHHHccCCCccc----hhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccH
Confidence 335789999999 9999999988876 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH---------------------HHHHHHHHHHH---hc---------
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACL---------------------HDALDTLKDKI---RP--------- 1702 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy---------------------dEALe~leKAL---el--------- 1702 (1956)
++|+..|.+.|+.+|++...+.+|+.++...... -..-..|...+ +.
T Consensus 87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l 166 (539)
T KOG0548|consen 87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL 166 (539)
T ss_pred HHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence 9999999999999999999999988887322000 00001111111 10
Q ss_pred ----------------------------CCCCCCC---chhhhhhcCc---chhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1703 ----------------------------GQESNPR---PSAYKADALP---SKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1703 ----------------------------g~e~dPd---~eay~~Ll~~---~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
.....|. ......+-.. .+....+.....+|.......++..|++.
T Consensus 167 ~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~ 246 (539)
T KOG0548|consen 167 NDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQH 246 (539)
T ss_pred ccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHH
Confidence 0011121 1111111111 11233455566777777888888888888
Q ss_pred HHHHHHhCCCC-C-------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1749 YLNAARQCPSQ-S-------------------------------------IDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1749 LekALel~P~n-~-------------------------------------~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
|..++.++ .+ . ........+|..|..+++++.|+.+|++++
T Consensus 247 y~~a~el~-~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 247 YAKALELA-TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHHhHh-hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 87777766 32 0 012233345667777888899999998887
Q ss_pred HhC--------------------------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1791 QVR--------------------------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1791 el~--------------------------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.-. |.-...-..-|..++..|+|..|+..|.+||..+|+++..|.++|.||.++
T Consensus 326 te~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL 405 (539)
T KOG0548|consen 326 TEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKL 405 (539)
T ss_pred hhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 643 222233445689999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|.+..|+...+++++++|++..+|...|.++..+.++..++ .++..++..-+..
T Consensus 406 ~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAl-eay~eale~dp~~ 459 (539)
T KOG0548|consen 406 GEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKAL-EAYQEALELDPSN 459 (539)
T ss_pred hhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCchh
Confidence 99999999999999999999999999999999999998887 7777777776554
No 52
>KOG0624|consensus
Probab=99.63 E-value=3.2e-14 Score=164.47 Aligned_cols=266 Identities=14% Similarity=0.131 Sum_probs=205.6
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
-++|.+|+.. |.+|+..+|++-. ++|.+|.+|+..|+-..|+..+.+++++.|+...+....|.++.++|++++
T Consensus 51 ~~Q~sDALt~--yHaAve~dp~~Y~----aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~ 124 (504)
T KOG0624|consen 51 RGQLSDALTH--YHAAVEGDPNNYQ----AIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ 124 (504)
T ss_pred hhhHHHHHHH--HHHHHcCCchhHH----HHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence 4578888888 9999988777655 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCH---HHH------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchh
Q psy8682 1658 AIAALSKCLSIEPKNL---EAL------------MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722 (1956)
Q Consensus 1658 ALe~yeKALeLdPdna---eAl------------~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl 1722 (1956)
|...|+..++.+|.+. +++ ......+...|++..|+++..+.+++ .|=
T Consensus 125 A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi----~~W------------- 187 (504)
T KOG0624|consen 125 AEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI----QPW------------- 187 (504)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc----Ccc-------------
Confidence 9999999999998543 222 22334455678999999999999988 443
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----- 1797 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----- 1797 (1956)
.+..+...+.+|...|+...|+.-++.+-++..++ ...++.++.+++..|+.+.++...+++|+++|++-
T Consensus 188 --da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn---Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~ 262 (504)
T KOG0624|consen 188 --DASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN---TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPF 262 (504)
T ss_pred --hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc---hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHH
Confidence 22333444555555555555555555555555555 55555555555555555555555555555555432
Q ss_pred -----------------------------------------H----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1798 -----------------------------------------R----LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1798 -----------------------------------------e----A~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
. ....+..|+..-|++.+|++.+.+++.++|+++.
T Consensus 263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~ 342 (504)
T KOG0624|consen 263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ 342 (504)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence 1 1223566677788999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++...|.+|.....|+.|+..|++|++.++++..+.-.+
T Consensus 343 ~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGl 381 (504)
T KOG0624|consen 343 VLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGL 381 (504)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 999999999999999999999999999999988765443
No 53
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.61 E-value=3.2e-13 Score=166.97 Aligned_cols=269 Identities=15% Similarity=0.095 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW-LSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl-~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
.+...+......|+++.|..+|.++.+.+|++..+. ...+.++...|++++|+..++++.+.+|+++.++..++.+|..
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~ 199 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR 199 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 344456666999999999999999999999885443 4559999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCC-chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd-~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
.|++++|++.+.+..+. .+. ......+. ..++..+........+-+...++++...+..|++ +.
T Consensus 200 ~gdw~~a~~~l~~l~k~----~~~~~~~~~~l~--------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~---~~ 264 (398)
T PRK10747 200 TGAWSSLLDILPSMAKA----HVGDEEHRAMLE--------QQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ---VA 264 (398)
T ss_pred HHhHHHHHHHHHHHHHc----CCCCHHHHHHHH--------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC---HH
Confidence 99999999999998877 222 00000000 0111221222222223333333333333334444 66
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
+...+|..+...|+.++|...++++++. +.++.+...++.+ ..++++++++..++.++..|+++..+..+|.++...
T Consensus 265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~ 341 (398)
T PRK10747 265 LQVAMAEHLIECDDHDTAQQIILDGLKR-QYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH 341 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence 6777777777777777777777777763 3344433333332 336777777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
|++++|.++|+++++..|++.. +..++.++...|+..++. .+++.++.+
T Consensus 342 ~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~-~~~~~~l~~ 390 (398)
T PRK10747 342 GEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAA-AMRRDGLML 390 (398)
T ss_pred CCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHhh
Confidence 7777777777777777776443 445666666667765554 555555443
No 54
>KOG2003|consensus
Probab=99.60 E-value=7.3e-14 Score=164.62 Aligned_cols=283 Identities=16% Similarity=0.149 Sum_probs=237.2
Q ss_pred chhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHh
Q psy8682 1507 NTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQR 1586 (1956)
Q Consensus 1507 n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs 1586 (1956)
..+-..++++.|+++.+.|.+.+....+..+ ..|-.. .+.. + -.++.+|.+
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa----------------~nl~~l--~flq-g----------gk~~~~aqq 477 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAA----------------NNLCAL--RFLQ-G----------GKDFADAQQ 477 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHh----------------hhhHHH--HHHh-c----------ccchhHHHH
Confidence 3456678999999999999887743322111 001000 0000 0 124445554
Q ss_pred chhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 1587 SSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666 (1956)
Q Consensus 1587 ~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKAL 1666 (1956)
. -+.++.++.-|+ .++.+.|.+.+..|++++|...|++++..+....++++++|..+..+|+.++|+++|-+.-
T Consensus 478 y--ad~aln~dryn~----~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 478 Y--ADIALNIDRYNA----AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred H--HHHHhcccccCH----HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 4 445565554444 4899999999999999999999999999998899999999999999999999999999988
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1667 eLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
.+--++.++++.++.+|..+.+..+|++.+.++..+ -|+ .+..+..||.+|-+.|+-.+|.
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~sl----ip~---------------dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL----IPN---------------DPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----CCC---------------CHHHHHHHHHHhhcccchhhhh
Confidence 888899999999999999999999999999999888 454 4556678999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+++-...+..|-+ ..+.-.||..|....-+++|+.+|+++--+.|+.......++.|+.+.|+|.+|...|+..-..
T Consensus 613 q~~ydsyryfp~n---ie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 613 QCHYDSYRYFPCN---IETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhcccccCcc---hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 9999999999998 8888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGd 1846 (1956)
.|.+.+.+..|..+.-.+|-
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999999999888887773
No 55
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.59 E-value=2e-13 Score=153.01 Aligned_cols=209 Identities=16% Similarity=0.072 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+.+.+.+|..|+..|++..|...++++|+.+|++..+|..+|.+|...|+.+.|.+.|++|++++|++.+++++.|..+
T Consensus 34 aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FL 113 (250)
T COG3063 34 AAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
+.+|++++|...|++++.. |. | +..+.++.|+|.|..+.|+++.|..+|+++++++|+. +
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----P~---Y---------~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~---~ 173 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----PA---Y---------GEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF---P 173 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----CC---C---------CCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC---C
Confidence 9999999999999999975 55 3 2344566777777777777777777777777777777 6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
.....++..++..|+|..|..++++.....+-.++.+.....+-...|+-+.|-++=.+.....|...+
T Consensus 174 ~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 174 PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 677777777777777777777777766666666666655556666667766666666666566665443
No 56
>KOG2003|consensus
Probab=99.57 E-value=1.4e-13 Score=162.34 Aligned_cols=275 Identities=17% Similarity=0.161 Sum_probs=234.1
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG--DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G--dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.++|+.|++. -+.+ ...+......+..++...++.+| ++.+|..+...++..+..++.++.+.|.+.+..|++
T Consensus 432 ~~d~~~aiei---lkv~--~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~ 506 (840)
T KOG2003|consen 432 NGDIEGAIEI---LKVF--EKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL 506 (840)
T ss_pred ccCHHHHHHH---HHHH--HhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH
Confidence 4456666654 1222 22232223334445555555543 899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
++|.+.|+.++.-+....++++++|..+..+|+.++|+++|-+.-.+ +...+..++.++.+
T Consensus 507 dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-------------------l~nn~evl~qiani 567 (840)
T KOG2003|consen 507 DKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-------------------LLNNAEVLVQIANI 567 (840)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-------------------HHhhHHHHHHHHHH
Confidence 99999999999999888999999999999999999999999887665 34567788999999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
|..+.+..+|++++.++..+-|++ +.++..||.+|-+.|+-.+|.+++-...+..|-+.+..-.||..|....-+++
T Consensus 568 ye~led~aqaie~~~q~~slip~d---p~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ek 644 (840)
T KOG2003|consen 568 YELLEDPAQAIELLMQANSLIPND---PAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEK 644 (840)
T ss_pred HHHhhCHHHHHHHHHHhcccCCCC---HHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999998 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
|+.+|++|--+.|+...-...++.|+.+.|+|..|.+.|+..-+..|.+.+.+..+-.+...+|
T Consensus 645 ai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlg 708 (840)
T KOG2003|consen 645 AINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLG 708 (840)
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhcccc
Confidence 9999999999999988888889999999999999999999999999998887665544443333
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.56 E-value=1.1e-12 Score=162.78 Aligned_cols=261 Identities=13% Similarity=0.064 Sum_probs=208.2
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++++.+... +.++.+..|++. .......+..+...|++++|...++++++..|+++.++..++.++...|++
T Consensus 129 ~~~g~~~~A~~~--l~~a~~~~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~ 203 (409)
T TIGR00540 129 QQRGDEARANQH--LEEAAELAGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW 203 (409)
T ss_pred HHCCCHHHHHHH--HHHHHHhCCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence 344677888877 777765554432 234555699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALM----AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~----~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ln 1731 (1956)
++|++.+.+.++....+...+. ....-+...+..+++.+.+.++... .|. +.+.....+..
T Consensus 204 ~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~----~p~-----------~~~~~~~l~~~ 268 (409)
T TIGR00540 204 QALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN----QPR-----------HRRHNIALKIA 268 (409)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH----CCH-----------HHhCCHHHHHH
Confidence 9999999999987554443322 2222223444555556677777766 443 12345677888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV--QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS--RLWNRLGASL 1807 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a--~~~LG~ly~~lGdyeEAie~fekALel~Pdna--eA~~nLG~ay 1807 (1956)
++..+...|++++|.+.++++++..|++ ... ...........++.+++++.++++++..|+++ .+...+|.++
T Consensus 269 ~a~~l~~~g~~~~A~~~l~~~l~~~pd~---~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~ 345 (409)
T TIGR00540 269 LAEHLIDCDDHDSAQEIIFDGLKKLGDD---RAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLL 345 (409)
T ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCc---ccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHH
Confidence 9999999999999999999999999998 321 13333444456889999999999999999999 8899999999
Q ss_pred HHCCChHHHHHHHH--HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1808 ANGNRPEEAVEAYH--TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1808 ~qlGryeEAie~ye--KALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.+.|++++|.++|+ .+++..|+... +..+|.++.++|+.++|.++|++++..
T Consensus 346 ~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 346 MKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred HHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999 57778888765 559999999999999999999998765
No 58
>KOG1129|consensus
Probab=99.56 E-value=8.7e-14 Score=160.25 Aligned_cols=261 Identities=17% Similarity=0.182 Sum_probs=225.3
Q ss_pred HHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQE---PD-------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeld---Pd-------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+++...+...|-......++.+ |. +..--..+|.||+++|.+.+|.+.++.+++..| .++.+..|+.+|
T Consensus 188 ~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY 266 (478)
T KOG1129|consen 188 LFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVY 266 (478)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHH
Confidence 3445556666665555554432 11 122335799999999999999999999999765 567888999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
....+...|+..+.+.++. .|. .......+|.++..++++++|.++|+.+++.+|.+ .
T Consensus 267 ~ridQP~~AL~~~~~gld~----fP~---------------~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~n---v 324 (478)
T KOG1129|consen 267 QRIDQPERALLVIGEGLDS----FPF---------------DVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPIN---V 324 (478)
T ss_pred HHhccHHHHHHHHhhhhhc----CCc---------------hhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcc---c
Confidence 9999999999999999988 555 44455678999999999999999999999999999 7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--C-cHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP--G-FVRARYNLGIT 1840 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P--d-naeA~~~LA~a 1840 (1956)
++...+|.-|+..++.+-|+.+|++.+++.-.+++.+.++|.|.+..++++-++..|++|+.... + -.++|++||.+
T Consensus 325 EaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 325 EAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred eeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 78888889999999999999999999999999999999999999999999999999999998643 3 46799999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1841 CVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1841 y~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
....|++.-|..+|+-+|.-+|++.++++++|.+..+.|+..++- +.|..|...++.
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Ar-sll~~A~s~~P~ 461 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGAR-SLLNAAKSVMPD 461 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHH-HHHHHhhhhCcc
Confidence 999999999999999999999999999999999999999997765 888888777765
No 59
>KOG0550|consensus
Probab=99.55 E-value=2.5e-14 Score=169.27 Aligned_cols=295 Identities=17% Similarity=0.145 Sum_probs=230.2
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
.+.++...++....+|..+++..+|.+|+..|..|++..|+++..|...+.+++..+++++|.-..++.++++|.....+
T Consensus 41 ~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~ 120 (486)
T KOG0550|consen 41 FSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQ 120 (486)
T ss_pred ccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccc
Confidence 44555557788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCCCchhhhhhcCcc-hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRP-GQESNPRPSAYKADALPS-KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALel-g~e~dPd~eay~~Ll~~~-Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
...+.++..+++..+|.+.++..-.. ....-|. +..+.... ..|....+.+..+.++...|++++|...--..++
T Consensus 121 ~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~---~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilk 197 (486)
T KOG0550|consen 121 LREGQCHLALSDLIEAEEKLKSKQAYKAANALPT---LEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILK 197 (486)
T ss_pred cchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhh---hhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHh
Confidence 99999999999888888776632100 0000011 11111110 0133344555667888888888888888888888
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS------------RLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna------------eA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
+++.+ ..+++..|.+++..++.+.|+..|+++|.++|+.. ..+..-|.-.++.|+|.+|.++|..
T Consensus 198 ld~~n---~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yte 274 (486)
T KOG0550|consen 198 LDATN---AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTE 274 (486)
T ss_pred cccch---hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHH
Confidence 88887 88888888888888888888888888888888754 3455667778888888888888888
Q ss_pred HHhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1823 ALQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1823 ALeL~Pdn----aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
+|.++|++ +..|.++|.+..++|+.++|+...+.|+.++|....++..+|.++..++++.+++ .++..|......
T Consensus 275 al~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV-~d~~~a~q~~~s 353 (486)
T KOG0550|consen 275 ALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV-EDYEKAMQLEKD 353 (486)
T ss_pred hhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHhhccc
Confidence 88888875 4467788888888888888888888888888888888888888888888887777 556666555444
No 60
>PLN02789 farnesyltranstransferase
Probab=99.55 E-value=1.2e-12 Score=157.29 Aligned_cols=208 Identities=12% Similarity=0.035 Sum_probs=182.5
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH--HH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACL--HD 1691 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy--dE 1691 (1956)
+...+++++|+..+.++++++|++..+|..++.++..+| ++++|+..++++++.+|++..+|..++.++...|.. ++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 445678899999999999999999999999999999998 689999999999999999999999999999888874 78
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
++.+++++++. +|+ ...++...+.++...|++++|++++.++++.+|.+ ..+|+.++.
T Consensus 127 el~~~~kal~~----dpk---------------Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N---~sAW~~R~~ 184 (320)
T PLN02789 127 ELEFTRKILSL----DAK---------------NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN---NSAWNQRYF 184 (320)
T ss_pred HHHHHHHHHHh----Ccc---------------cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc---hhHHHHHHH
Confidence 89999999999 776 44567778888999999999999999999999998 889999998
Q ss_pred HHHHc---CCH----HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy8682 1772 LFNLS---DEY----DKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1772 ly~~l---Gdy----eEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~a 1840 (1956)
++... |.+ ++++.+..+++.++|++..+|+.++.++.. +++..+|+..+.+++...|.+..++..|+.+
T Consensus 185 vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~ 264 (320)
T PLN02789 185 VITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDL 264 (320)
T ss_pred HHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHH
Confidence 88766 333 478888889999999999999999999988 4567789999999999899999999999999
Q ss_pred HHHc
Q psy8682 1841 CVHL 1844 (1956)
Q Consensus 1841 y~kl 1844 (1956)
|...
T Consensus 265 ~~~~ 268 (320)
T PLN02789 265 LCEG 268 (320)
T ss_pred HHhh
Confidence 9763
No 61
>KOG1840|consensus
Probab=99.55 E-value=2.6e-13 Score=170.03 Aligned_cols=246 Identities=13% Similarity=0.077 Sum_probs=206.7
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--------EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQES 1706 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--------dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~ 1706 (1956)
.|.-..+...+|..|...|+|++|+..++.|++. .|.-......+|.+|..++++++|+.+|++|+.+
T Consensus 195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i---- 270 (508)
T KOG1840|consen 195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTI---- 270 (508)
T ss_pred CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----
Confidence 4666677888999999999999999999999998 5666666777999999999999999999999998
Q ss_pred CCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1707 NPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-----QSIDPDVQNGLGVLFNLSDEYDK 1781 (1956)
Q Consensus 1707 dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-----n~~~a~a~~~LG~ly~~lGdyeE 1781 (1956)
........ .+..+.++.+||.+|...|++++|..++++|+++... .......+..++.++..++++++
T Consensus 271 ------~e~~~G~~-h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Ee 343 (508)
T KOG1840|consen 271 ------REEVFGED-HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEE 343 (508)
T ss_pred ------HHHhcCCC-CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhH
Confidence 55554333 6788899999999999999999999999999887432 11235578889999999999999
Q ss_pred HHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CCcHHHHHHHHHHHHHcC
Q psy8682 1782 AVDCFRSALQVR-----P---DDSRLWNRLGASLANGNRPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1782 Aie~fekALel~-----P---dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~--------PdnaeA~~~LA~ay~klG 1845 (1956)
|+.++++++++. + .-+..+.+||.+|..+|++++|.++|++|+++. +.....+.+||..|.+++
T Consensus 344 a~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k 423 (508)
T KOG1840|consen 344 AKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELK 423 (508)
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhc
Confidence 999999999863 2 335789999999999999999999999999864 234567899999999999
Q ss_pred CHHHHHHHHHHHHHhc----CCC---hhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1846 ANTQAVEHFLTALNQQ----AAT---HDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1846 dyEEAie~yekALeLd----Pdn---~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
++.+|...|.++..+. |++ ...+.+|+.+|..+|++++++ .+...+
T Consensus 424 ~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~-~~~~~~ 476 (508)
T KOG1840|consen 424 KYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAE-ELEEKV 476 (508)
T ss_pred ccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHH-HHHHHH
Confidence 9999999999998764 334 457889999999999998776 444443
No 62
>KOG2076|consensus
Probab=99.55 E-value=6.5e-13 Score=168.90 Aligned_cols=346 Identities=14% Similarity=0.089 Sum_probs=242.4
Q ss_pred ccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhh
Q psy8682 1498 ASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQW 1577 (1956)
Q Consensus 1498 aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~W 1577 (1956)
..+|++ |....-|++++|+++++..-+.+ +.+.. . |..++ ..+..
T Consensus 141 ~ll~eA---N~lfarg~~eeA~~i~~EvIkqd--p~~~~---------------a-------y~tL~--------~IyEq 185 (895)
T KOG2076|consen 141 QLLGEA---NNLFARGDLEEAEEILMEVIKQD--PRNPI---------------A-------YYTLG--------EIYEQ 185 (895)
T ss_pred HHHHHH---HHHHHhCCHHHHHHHHHHHHHhC--ccchh---------------h-------HHHHH--------HHHHH
Confidence 344444 66777799999999965432222 22222 2 33343 34444
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++.++++.. .-.|-.+.|+ +.+.|..++....++|++.+|+-+|.+|++.+|.+....+..+.+|.++|++..
T Consensus 186 rGd~eK~l~~--~llAAHL~p~----d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~ 259 (895)
T KOG2076|consen 186 RGDIEKALNF--WLLAAHLNPK----DYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR 259 (895)
T ss_pred cccHHHHHHH--HHHHHhcCCC----ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence 5566666665 2233334444 446999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCCCCchhhhhhcCcc----------
Q psy8682 1658 AIAALSKCLSIEPKNL-----EALMAISICFTNEACLHDALDTLKDKIRPGQ--ESNPRPSAYKADALPS---------- 1720 (1956)
Q Consensus 1658 ALe~yeKALeLdPdna-----eAl~~LA~aY~~lGdydEALe~leKALelg~--e~dPd~eay~~Ll~~~---------- 1720 (1956)
|+..|.+++.+.|... +.-...+..+...++-+.|++.++.++.... ...|+...+..+....
T Consensus 260 Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i 339 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKI 339 (895)
T ss_pred HHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHH
Confidence 9999999999998221 1223446667777777888888887777411 1112211222111100
Q ss_pred ---------------------------------hhhhhHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1721 ---------------------------------KLTRLANH-TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1721 ---------------------------------Kl~e~a~a-~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
+..-.... ...++.+..+.++..+++..+..--...|.+ ....+
T Consensus 340 ~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d--~~dL~ 417 (895)
T KOG2076|consen 340 VDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSD--DVDLY 417 (895)
T ss_pred HHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhh--hHHHH
Confidence 00111111 3444445555555556655544333322443 57899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
..++.+|...|+|.+|+.+|..+....+. +..+|..+|.||..+|.+++|+++|++++...|++.++...|+.++.++|
T Consensus 418 ~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g 497 (895)
T KOG2076|consen 418 LDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLG 497 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcC
Confidence 99999999999999999999999887654 57899999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCCh---------hchhccccchhhhcccHHHHH
Q psy8682 1846 ANTQAVEHFLTALNQQAATH---------DGLTPHGLEPRAVKEMSDSIW 1886 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~---------dA~~~LG~l~~~lg~~seAIw 1886 (1956)
+.++|++.+.....-++.+. .....+..++...|+.++-+.
T Consensus 498 ~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~ 547 (895)
T KOG2076|consen 498 NHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN 547 (895)
T ss_pred CHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 99999999988763332222 234555666777777766443
No 63
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.55 E-value=1e-12 Score=172.95 Aligned_cols=270 Identities=8% Similarity=-0.047 Sum_probs=222.1
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL 1668 (1956)
+++|.++....+..+...|..+...|.+.|++++|+.+|+++.+.. .-+..++..+..++.+.|++++|.+.+..+++.
T Consensus 275 ~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~ 354 (697)
T PLN03081 275 IEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT 354 (697)
T ss_pred HHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence 3444444333344467789999999999999999999999987653 235668888999999999999999999999887
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1669 E-PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1669 d-PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
. +.+..++..|...|.+.|++++|.+.|+++.+. + ...|..+...|...|+.++|++
T Consensus 355 g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~------d----------------~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 355 GFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK------N----------------LISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCC------C----------------eeeHHHHHHHHHHcCCHHHHHH
Confidence 6 556678889999999999999999999876533 2 1246677899999999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP--DDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1748 ~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P--dnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+|+++.+.... .+..++..+..++...|..++|.++|+...+..+ .+...|..+..+|.+.|++++|.+.++++-
T Consensus 413 lf~~M~~~g~~--Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~- 489 (697)
T PLN03081 413 MFERMIAEGVA--PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP- 489 (697)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC-
Confidence 99999875422 1267788888999999999999999999986432 345678899999999999999999988752
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
..| +...|..|..++...|+.+.|...+++.+.+.|++...|..+..+|...|+..++.
T Consensus 490 ~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~ 548 (697)
T PLN03081 490 FKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAA 548 (697)
T ss_pred CCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHH
Confidence 334 46679999999999999999999999999999999999999999999999998776
No 64
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=2.1e-12 Score=170.95 Aligned_cols=313 Identities=13% Similarity=0.019 Sum_probs=203.1
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..|++++++|+.. +++++ .+.+. ....+..+|..+...|++++|++.|+++++.+|+++.++..++.++...++
T Consensus 78 ~~~~G~~~~A~~~--~eka~--~p~n~--~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q 151 (822)
T PRK14574 78 AGWAGRDQEVIDV--YERYQ--SSMNI--SSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR 151 (822)
T ss_pred HHHcCCcHHHHHH--HHHhc--cCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence 3456677777776 66666 33322 233444456677777777777777777777777777777777777777777
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch-hhhhhcCcc-------------
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-AYKADALPS------------- 1720 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e-ay~~Ll~~~------------- 1720 (1956)
.++|+..+++++..+|.+... ..++.++...++..+|++.++++++. +|+.. .+..+....
T Consensus 152 ~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~----~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 152 GGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRL----APTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 777777777777777775443 44555555566666677777777776 44411 000000000
Q ss_pred --------------------------------------------------------hhh---------------------
Q psy8682 1721 --------------------------------------------------------KLT--------------------- 1723 (1956)
Q Consensus 1721 --------------------------------------------------------Kl~--------------------- 1723 (1956)
+.|
T Consensus 227 ~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~ 306 (822)
T PRK14574 227 KENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRH 306 (822)
T ss_pred HhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhh
Confidence 000
Q ss_pred ------------------hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1724 ------------------RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1724 ------------------e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.-..+....|..|...+++++|+.+|++++.-.|.. .........|-.+|...+++++|
T Consensus 307 r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A 386 (822)
T PRK14574 307 QTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKA 386 (822)
T ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHH
Confidence 011112334677777777777777777776654321 01233345666777777888888
Q ss_pred HHHHHHHHHhCC---------------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy8682 1783 VDCFRSALQVRP---------------DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1783 ie~fekALel~P---------------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy 1847 (1956)
..++++..+..| +...+...++.++...|++.+|++.+++.+...|.+...+..+|.++...|.+
T Consensus 387 ~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 387 YQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLP 466 (822)
T ss_pred HHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 888877776433 22356666777788888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1848 EEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.+|...++.++.++|++..+...+|.++..+++..++- .....+....+++
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~-~~~~~l~~~~Pe~ 517 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME-LLTDDVISRSPED 517 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH-HHHHHHHhhCCCc
Confidence 88888888888888888888888888777777776553 3344444455544
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.54 E-value=1.2e-12 Score=146.76 Aligned_cols=208 Identities=14% Similarity=0.095 Sum_probs=191.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
..+...||.-|+..|++..|...+++||+.+|++..+|..+|.+|...|+.+.|.+.|++++.+ +|+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----~p~--------- 101 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----APN--------- 101 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----CCC---------
Confidence 4578899999999999999999999999999999999999999999999999999999999999 777
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
..+.++|.|..++.+|++++|...|++|+.. |.....+.++.++|.|..++|+.+.|..+|+++++.+|+.+.
T Consensus 102 ------~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 102 ------NGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred ------ccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 4566788999999999999999999999874 443344789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
....++..++..|+|..|..++++.....+-..+.+.....+-..+|+-+.|.++=.+..+..|...+
T Consensus 175 ~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e 242 (250)
T COG3063 175 ALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEE 242 (250)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH
Confidence 99999999999999999999999999988888888888889999999999999999998899998665
No 66
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.54 E-value=4.6e-14 Score=166.81 Aligned_cols=129 Identities=24% Similarity=0.425 Sum_probs=111.0
Q ss_pred HHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHhhcccCC
Q psy8682 767 ELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEES-QKQVDRARSIYERALDVDHR 845 (1956)
Q Consensus 767 ~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~-~Gd~ErARsIfERALs~~Pk 845 (1956)
-+|+.|+.|+. -.+-.+.||++|++|+...+.+..+|+.||.+|+. .++.+.|+.|||++++.+|.
T Consensus 2 ~v~i~~m~~~~-------------r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~ 68 (280)
T PF05843_consen 2 LVWIQYMRFMR-------------RTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS 68 (280)
T ss_dssp HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-------------HhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence 37999998876 11226789999999997656778999999999999 57777799999999999999
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 846 NITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 846 ~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
+.++|+.|++|+++.++++.||.||||++...|.. ..+|.+|++||.++||.+.+++|++|+.
T Consensus 69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~ 134 (280)
T PF05843_consen 69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAE 134 (280)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999987764 5799999999999999999999999976
No 67
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.54 E-value=3.3e-12 Score=169.09 Aligned_cols=311 Identities=13% Similarity=-0.008 Sum_probs=227.5
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++|..|+.. ++++++..|.++. ....++.++...|+.++|+.++++++...|.....+..+|.++...|++++
T Consensus 47 ~Gd~~~Al~~--L~qaL~~~P~~~~----av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~ 120 (822)
T PRK14574 47 AGDTAPVLDY--LQEESKAGPLQSG----QVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQ 120 (822)
T ss_pred CCCHHHHHHH--HHHHHhhCccchh----hHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 4678888888 8999988887753 333788888889999999999999994445556666666889999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc-----------------
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS----------------- 1720 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~----------------- 1720 (1956)
|++.|+++++.+|+++.++..++.+|...++.++|++.+++++.. +|....+..+....
T Consensus 121 Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~----dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 121 ALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER----DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc----CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 77722221110000
Q ss_pred -hhhhhHHHHHHHHHHHHhcCCHHH------------------------------------------------HHHHHHH
Q psy8682 1721 -KLTRLANHTLTFRSPLSSREIHQQ------------------------------------------------VLSLYLN 1751 (1956)
Q Consensus 1721 -Kl~e~a~a~lnLA~ay~~lGdyeE------------------------------------------------Ale~Lek 1751 (1956)
..|.....+..+..++...|-... |+..++.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 012222222222222222222211 2222222
Q ss_pred HHHh---CCCC------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1752 AARQ---CPSQ------------------------------------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1752 ALel---~P~n------------------------------------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
.+.. .|.. .+...+....|..|...++.++|+..|++++.-
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 2221 1110 011334445566777888888888888888775
Q ss_pred CC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---------------CcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1793 RP------DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP---------------GFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1793 ~P------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P---------------dnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
.+ ........|-.+|...+++++|..++++..+..| +...+...++.++...|++.+|.
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 42 2333356778888999999999999999887443 34567888999999999999999
Q ss_pred HHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1852 EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1852 e~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+++.+...|.|+..+..+|.++...|...+|. ..++.+..+.++.
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~-~~~k~a~~l~P~~ 483 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAE-QELKAVESLAPRS 483 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHhhhCCcc
Confidence 9999999999999999999999999999998887 6668888887775
No 68
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.52 E-value=7.3e-12 Score=145.34 Aligned_cols=311 Identities=15% Similarity=0.105 Sum_probs=241.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHH
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL-----EALMAISIC 1682 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna-----eAl~~LA~a 1682 (1956)
-|..|.-++-..+.++|++.|-.+++.+|...++...||.+|...|..+.|+..-+..++ .|+.. -++..||.-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 456777788889999999999999999999999999999999999999999999876665 45533 478899999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--C
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ--S 1760 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n--~ 1760 (1956)
|...|-++.|...|...++. |. ....+...|..+|....++++|++..++..++.+.. .
T Consensus 117 ym~aGl~DRAE~~f~~L~de-----~e--------------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~ 177 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDE-----GE--------------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRV 177 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcc-----hh--------------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchh
Confidence 99999999999999998875 22 234566778899999999999999999999998876 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-HHHHHHHHH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-VRARYNLGI 1839 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-aeA~~~LA~ 1839 (1956)
..+..+..+|..+....+.++|+..+.+|++.+|+...+-..+|.++...|+|+.|++.++.+++.+|+. +.+...|..
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~ 257 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE 257 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence 2356788899999999999999999999999999999999999999999999999999999999999986 568889999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCcccccccCcchhHHHHHHhh
Q psy8682 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHD 1919 (1956)
Q Consensus 1840 ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~~~~~~Ra~~ 1919 (1956)
||.++|+.++.+..+.++.+..++..- -..+..+.....-. ++...++..-+..-+. .. ...|+-.
T Consensus 258 ~Y~~lg~~~~~~~fL~~~~~~~~g~~~-~l~l~~lie~~~G~-~~Aq~~l~~Ql~r~Pt-----------~~-gf~rl~~ 323 (389)
T COG2956 258 CYAQLGKPAEGLNFLRRAMETNTGADA-ELMLADLIELQEGI-DAAQAYLTRQLRRKPT-----------MR-GFHRLMD 323 (389)
T ss_pred HHHHhCCHHHHHHHHHHHHHccCCccH-HHHHHHHHHHhhCh-HHHHHHHHHHHhhCCc-----------HH-HHHHHHH
Confidence 999999999999999999999887432 22222222222222 2222333332222221 11 1122221
Q ss_pred cC-CCCCCCCCcchhHHHHHHHhhhhcccccccc
Q psy8682 1920 CS-DDDDDPSGYQPCTKLHNLSGVLGTVHLTYQC 1952 (1956)
Q Consensus 1920 ~~-~dde~peg~q~~~kL~~lsG~lg~l~~~y~~ 1952 (1956)
.. .+.++..+-.-+..++...|-.-..+.-|+|
T Consensus 324 ~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC 357 (389)
T COG2956 324 YHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRC 357 (389)
T ss_pred hhhccccccchhhhHHHHHHHHHHHHhhcCCcee
Confidence 11 1122234556677778888877777888888
No 69
>KOG2047|consensus
Probab=99.51 E-value=7.2e-13 Score=162.66 Aligned_cols=186 Identities=17% Similarity=0.224 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHHHhCCC-C--CCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC-CCC---HHHHHHHHhhccCCCCC
Q psy8682 710 IHQQVLSLYLNAARQCPS-Q--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDF---TELLVYLFSSLDFQPPK 782 (1956)
Q Consensus 710 ~~e~v~~vF~~A~q~n~~-~--~~d~dV~~~La~Ly~~sgeyEkArelFerALkkf-P~d---~~IWl~ylsfL~~~~~~ 782 (1956)
..++..++|.+||+.-++ . +.-.+.|+.+|.+|+.+|+++.||.+|++|++.. +.- ..+|..++...+
T Consensus 362 ~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemEl----- 436 (835)
T KOG2047|consen 362 NAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMEL----- 436 (835)
T ss_pred ChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHH-----
Confidence 467899999999998443 2 6678899999999999999999999999999975 333 788888774433
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHhh------------------cCCCHHHHHHHHHHHHHcCCHHH-------------
Q psy8682 783 QKISDPDELRDYQHRKRKAFEDNIRK------------------NRMVISNWIKYAQWEESQKQVDR------------- 831 (1956)
Q Consensus 783 ~ki~d~Eea~~~~~RAR~lyEraL~~------------------~~~s~~lWlkYAqfE~~~Gd~Er------------- 831 (1956)
......+|+++.++|+.. .+.+..+|..|+++|+..|.++.
T Consensus 437 --------rh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri 508 (835)
T KOG2047|consen 437 --------RHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI 508 (835)
T ss_pred --------hhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence 111222333344433311 02234455566655555555544
Q ss_pred ---------------------HHHHHHHhhc--ccCCCHHHHHHHHH-HHHHcCC--hHHHHHHHHHHHHhCCCC--HHH
Q psy8682 832 ---------------------ARSIYERALD--VDHRNITLWLKYTE-LEMRNRQ--VNHARNLWDRAVTILPRA--NQF 883 (1956)
Q Consensus 832 ---------------------ARsIfERALs--~~Pk~~dLWl~Yad-fE~k~gn--ierARsLFERAL~~~Pks--~~L 883 (1956)
+-.+|||+++ ..|.-.+||+.|+. |-.+.|. .++||.|||.||..||.. .-+
T Consensus 509 aTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp~~aKti 588 (835)
T KOG2047|consen 509 ATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPPEHAKTI 588 (835)
T ss_pred CCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCHHHHHHH
Confidence 5555666666 46777899999986 5556664 699999999999999854 778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 884 WYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 884 W~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
++.|++||+++|-..++-.||+||-
T Consensus 589 yLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 589 YLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999988888888874
No 70
>KOG0550|consensus
Probab=99.51 E-value=2.3e-13 Score=161.40 Aligned_cols=275 Identities=14% Similarity=0.134 Sum_probs=233.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
....-...|..|+.. |..|+.+.|++ +..|...+..++..|+|++|....++.+.++|.........+.++..+
T Consensus 57 n~~yk~k~Y~nal~~--yt~Ai~~~pd~----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~ 130 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKN--YTFAIDMCPDN----ASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLAL 130 (486)
T ss_pred chHHHHhhHHHHHHH--HHHHHHhCccc----hhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhh
Confidence 677778999999999 99999988876 458999999999999999999999999999999999999999999888
Q ss_pred CChHHHHHHHHHHH------------HhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1653 EQDPQAIAALSKCL------------SIE------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1653 GdyeEALe~yeKAL------------eLd------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
++..+|...|+..- .+. |....+....+.++...|++++|...--..+++ ++.
T Consensus 131 ~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkl----d~~----- 201 (486)
T KOG0550|consen 131 SDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKL----DAT----- 201 (486)
T ss_pred HHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhc----ccc-----
Confidence 88887776665211 011 222345567789999999999999999999888 555
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS---------IDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~---------~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
...+.+..|.+++..++.+.|+..|++++.++|+.. .....+...|.-.++.|+|.+|.++
T Consensus 202 ----------n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~ 271 (486)
T KOG0550|consen 202 ----------NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYEC 271 (486)
T ss_pred ----------hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHH
Confidence 455667789999999999999999999999999861 1234566778888999999999999
Q ss_pred HHHHHHhCCCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1786 FRSALQVRPDD----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1786 fekALel~Pdn----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
|.++|.++|++ +..|.++|.+..++|+.++|+...+.|+.+++....++...|.|+..++++++|++.|++|+++.
T Consensus 272 Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 272 YTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999985 56789999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChhchhcccc
Q psy8682 1862 AATHDGLTPHGL 1873 (1956)
Q Consensus 1862 Pdn~dA~~~LG~ 1873 (1956)
.+ .+....++.
T Consensus 352 ~s-~e~r~~l~~ 362 (486)
T KOG0550|consen 352 KD-CEIRRTLRE 362 (486)
T ss_pred cc-cchHHHHHH
Confidence 77 444433333
No 71
>KOG1174|consensus
Probab=99.51 E-value=1.6e-12 Score=153.61 Aligned_cols=242 Identities=18% Similarity=0.172 Sum_probs=152.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA--------------------------------- 1650 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~--------------------------------- 1650 (1956)
+...+..+|.+++..|++++|+..|+++.-++|.+..+.-.+|.++.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l 310 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL 310 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence 34467777888888888888888888887777776555544444444
Q ss_pred -HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1651 -ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1651 -~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
..+++..|+.+-+++++.+|.+..++...|.++...++.++|+-.|+.+..+ .|. ..+.|
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----ap~---------------rL~~Y 371 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQML----APY---------------RLEIY 371 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhc----chh---------------hHHHH
Confidence 4455556666666666666666666666666666666666666666666666 333 23344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH-HHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLF-NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG-~ly-~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
..+..+|...|++.+|....+.+++..|.+ +.++..+| .++ ..-.--++|.+.+++++++.|....+...+|.++
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~~~~s---A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRLFQNS---ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHHhhcc---hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 445566666666666666666666666666 55555554 222 2223345666666666666666666666666666
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
...|+++.++..+++++...|+ ...+..||.++...+.+.+|.++|..||+++|++..+.
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl 508 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTL 508 (564)
T ss_pred HhhCccchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHH
Confidence 6666666666666666666554 33556666666666666666666666666666655443
No 72
>KOG1174|consensus
Probab=99.50 E-value=3.3e-12 Score=151.00 Aligned_cols=279 Identities=15% Similarity=0.057 Sum_probs=192.1
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
|.++-...-+.-+..++-.-...-|+|...+..+|.+++..|++.+|+..|+++..++|....+.-..|.++...|+++.
T Consensus 205 Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~ 284 (564)
T KOG1174|consen 205 AQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQ 284 (564)
T ss_pred HHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhh
Confidence 33333333455555666666778899999999999999999999999999999999999888776666666666666665
Q ss_pred HHHHHHHHHhcCCCCCCC--chhhhh---hcCcc--------------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPR--PSAYKA---DALPS--------------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd--~eay~~---Ll~~~--------------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
-.......+.. ... ...+.. ++... -.+....++...|.++...++.++|+-.|+.|
T Consensus 285 ~~~L~~~Lf~~----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 285 DSALMDYLFAK----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred HHHHHHHHHhh----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 55444444443 100 000000 00000 00112334455566666666666666666666
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHH-CCChHHHHHHHHHHHhhCCCc
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG-ASLAN-GNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG-~ay~q-lGryeEAie~yeKALeL~Pdn 1830 (1956)
..+.|.. .+.|..|-.+|...|++.+|....+.+++.-|.++.++..+| .+++. ----++|.+.+++++.+.|.+
T Consensus 361 q~Lap~r---L~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y 437 (564)
T KOG1174|consen 361 QMLAPYR---LEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIY 437 (564)
T ss_pred Hhcchhh---HHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCcc
Confidence 6666665 566666666666666666666666666666666666666665 33322 222467788888889999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
..+-..+|.++...|++++++..++++|...|+.. .+..+|.+...+..++++. +++..|+.+-++.
T Consensus 438 ~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~-LH~~Lgd~~~A~Ne~Q~am-~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 438 TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVN-LHNHLGDIMRAQNEPQKAM-EYYYKALRQDPKS 504 (564)
T ss_pred HHHHHHHHHHHHhhCccchHHHHHHHHHhhccccH-HHHHHHHHHHHhhhHHHHH-HHHHHHHhcCccc
Confidence 99999999999999999999999999999888744 5778888888888888887 8888888887764
No 73
>PLN02789 farnesyltranstransferase
Probab=99.50 E-value=1.1e-12 Score=157.63 Aligned_cols=220 Identities=12% Similarity=0.095 Sum_probs=192.3
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHH
Q psy8682 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA-CLHDALDTLK 1697 (1956)
Q Consensus 1619 GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG-dydEALe~le 1697 (1956)
++|.+|..+|+.++. ..+++++|+..+.++++++|++..+|..++.++..+| .+++|+..++
T Consensus 34 ~~~~~a~~~~ra~l~-----------------~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~ 96 (320)
T PLN02789 34 PEFREAMDYFRAVYA-----------------SDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAE 96 (320)
T ss_pred HHHHHHHHHHHHHHH-----------------cCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHH
Confidence 456667666666554 4578889999999999999999999999999999998 6899999999
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH--QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy--eEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
++++. +|+ ...++...+.++...|+. ++++.++.++++.+|.+ ..+|..+|.++..
T Consensus 97 ~~i~~----npk---------------nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN---y~AW~~R~w~l~~ 154 (320)
T PLN02789 97 DVAED----NPK---------------NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN---YHAWSHRQWVLRT 154 (320)
T ss_pred HHHHH----CCc---------------chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---HHHHHHHHHHHHH
Confidence 99999 777 233456667777777764 78899999999999999 9999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CCh----HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----c
Q psy8682 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---NRP----EEAVEAYHTALQLSPGFVRARYNLGITCVH----L 1844 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql---Gry----eEAie~yeKALeL~PdnaeA~~~LA~ay~k----l 1844 (1956)
.|++++|+++++++++.+|.+..+|+.++.++... |.+ ++++.+..+++.++|++..+|..++.++.. +
T Consensus 155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l 234 (320)
T PLN02789 155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEAL 234 (320)
T ss_pred hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCccc
Confidence 99999999999999999999999999999998876 333 478889999999999999999999999988 5
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
++..+|+..+.+++..+|.++-++..++.++..
T Consensus 235 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 235 VSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 667889999999999999999888888888764
No 74
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.48 E-value=1.2e-11 Score=152.94 Aligned_cols=258 Identities=14% Similarity=0.104 Sum_probs=201.4
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChH
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdye 1656 (1956)
-.++++.+... +.++.+..|++. .......+..+...|++++|+..++++++.+|+++.++..++.+|...|+++
T Consensus 130 ~~g~~~~A~~~--l~~A~~~~~~~~---~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 130 QRGDEARANQH--LERAAELADNDQ---LPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HCCCHHHHHHH--HHHHHhcCCcch---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHH
Confidence 35677888877 777776554442 2234456999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHH-HHHH---HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAI-SICF---TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~L-A~aY---~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+|+..+.+..+..+.+......+ ..+| ..........+.+.+..+. .|. +.+..+.....+
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~----lp~-----------~~~~~~~~~~~~ 269 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN----QSR-----------KTRHQVALQVAM 269 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh----CCH-----------HHhCCHHHHHHH
Confidence 99999999988776654432211 1111 1111111223334443333 222 134567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
|..+...|+.++|...++++++..+ + .......+.+ ..++.+++++.+++.++..|+++..+..+|.++...|+
T Consensus 270 A~~l~~~g~~~~A~~~L~~~l~~~~-~---~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~ 343 (398)
T PRK10747 270 AEHLIECDDHDTAQQIILDGLKRQY-D---ERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGE 343 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCC-C---HHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCC
Confidence 9999999999999999999999544 4 4443334443 45999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
+++|.++|+++++..|++. .+..++.++.++|+.++|..+|++++.+.
T Consensus 344 ~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 344 WQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 9999999999999999864 46689999999999999999999998864
No 75
>KOG4162|consensus
Probab=99.45 E-value=1.2e-11 Score=155.51 Aligned_cols=310 Identities=16% Similarity=0.122 Sum_probs=237.7
Q ss_pred hhHHHHHhchhhHhHhhhh-ccCCCccHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFA-EDNPMQNETNAFALGQEKLRQG-----------DLPSAILYLEAAAKQEPDNAEVWLSLG 1646 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~-p~NP~~daeall~LG~aylk~G-----------dydEAIe~fekALeldPdnaeAl~~LA 1646 (1956)
+.+++++.. ..+++... .......+..++.+|.+|-.+- ...+++..++++++.+|.|+.+.++++
T Consensus 408 ~~~eegldY--A~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~la 485 (799)
T KOG4162|consen 408 KLVEEGLDY--AQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLA 485 (799)
T ss_pred hhhhhHHHH--HHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence 345555555 44555421 1122225667888888775432 457899999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc-----
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSI-EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS----- 1720 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeL-dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~----- 1720 (1956)
.-|..+++.+.|+++.++++++ ..+++.+|..+|.++...+++.+|+...+.++.. .|+ ...+....
T Consensus 486 lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E----~~~---N~~l~~~~~~i~~ 558 (799)
T KOG4162|consen 486 LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE----FGD---NHVLMDGKIHIEL 558 (799)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH----hhh---hhhhchhhhhhhh
Confidence 9999999999999999999999 5678889999999999999999999999999988 444 11111000
Q ss_pred hhhhh---HH-----------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------------CCC--
Q psy8682 1721 KLTRL---AN-----------------------HTLTFRSPLSSREIHQQVLSLYLNAARQC-------------PSQ-- 1759 (1956)
Q Consensus 1721 Kl~e~---a~-----------------------a~lnLA~ay~~lGdyeEAle~LekALel~-------------P~n-- 1759 (1956)
+..+. .+ .....+......++..+|...++++...- |..
T Consensus 559 ~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~ 638 (799)
T KOG4162|consen 559 TFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTV 638 (799)
T ss_pred hcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccc
Confidence 00000 00 00011122223345555555555553321 111
Q ss_pred --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH
Q psy8682 1760 --------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1760 --------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna 1831 (1956)
......|...|..+...+..++|..++.++-.++|..+..|+..|.++...|+..+|.+.|..|+.++|+++
T Consensus 639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv 718 (799)
T KOG4162|consen 639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV 718 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence 011245677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHH--HHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVE--HFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie--~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.+...+|.++...|+..-|.. .+..+++++|.++++|+.+|.+....|+..+|. +++..|..+...
T Consensus 719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aa-ecf~aa~qLe~S 786 (799)
T KOG4162|consen 719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAA-ECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHH-HHHHHHHhhccC
Confidence 999999999999999888888 999999999999999999999999999998887 777777666554
No 76
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.45 E-value=1.1e-10 Score=158.44 Aligned_cols=235 Identities=13% Similarity=0.045 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQ----EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAI 1679 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALel----dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~L 1679 (1956)
...|..+...+.+.|++++|..+|+++... .| +..+|..+..+|.+.|++++|.+.|+.+.+.+ +.+...|..+
T Consensus 542 ~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsL 620 (1060)
T PLN03218 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIA 620 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 444555555555555555555555555431 12 23444445555555555555555555555443 2334445555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
...|.+.|++++|+.+|+++.+. ...|+ ...+..+...|...|++++|.+++.++.+....
T Consensus 621 I~ay~k~G~~deAl~lf~eM~~~--Gv~PD----------------~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~- 681 (1060)
T PLN03218 621 VNSCSQKGDWDFALSIYDDMKKK--GVKPD----------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIK- 681 (1060)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHc--CCCCC----------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC-
Confidence 55555555555555555555443 01111 234555566666666666666666666554321
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-CCcHHHHHHH
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-PGFVRARYNL 1837 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-PdnaeA~~~L 1837 (1956)
....++..+...|.+.|++++|.+.|++..... ..+...|+.+...|.+.|++++|++.|+++.... .-+...|..+
T Consensus 682 -pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 682 -LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred -CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 124556666666666666666666666654432 2234556666666666666666666666655431 1134455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeL 1860 (1956)
..++.+.|++++|..++.++++.
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHc
Confidence 56666666666666666666553
No 77
>PLN03218 maturation of RBCL 1; Provisional
Probab=99.44 E-value=1.1e-10 Score=158.58 Aligned_cols=322 Identities=12% Similarity=0.036 Sum_probs=236.9
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
++..+...+++++|.+++..+....+.+.... |. .+. ..+...+++++|
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~t----------------yn-------sLI--------~~y~k~G~vd~A 491 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKL----------------YT-------TLI--------STCAKSGKVDAM 491 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHH----------------HH-------HHH--------HHHHhCcCHHHH
Confidence 46677888999999999888766554332221 12 222 122334456666
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
... ++...... ...+...|..+...|.+.|++++|+.+|+++.... .-+..+|..+...|.+.|++++|.+.|.
T Consensus 492 ~~v--f~eM~~~G---v~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~ 566 (1060)
T PLN03218 492 FEV--FHEMVNAG---VEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLA 566 (1060)
T ss_pred HHH--HHHHHHcC---CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 665 55554321 22256788888999999999999999999887653 2246788889999999999999999999
Q ss_pred HHHHh----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc
Q psy8682 1664 KCLSI----EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1664 KALeL----dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l 1739 (1956)
++... .|+ ...+..+...|.+.|++++|.+.|+++.+. +.. .....|..+...|.+.
T Consensus 567 eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~----gi~--------------p~~~tynsLI~ay~k~ 627 (1060)
T PLN03218 567 EMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY----NIK--------------GTPEVYTIAVNSCSQK 627 (1060)
T ss_pred HHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCC--------------CChHHHHHHHHHHHhc
Confidence 88763 343 567888888899999999999999999887 211 1233456677888999
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie 1818 (1956)
|++++|+.+|.++.+..-. .+..++..+...|.+.|++++|.+.++++.+.. +.+..+|..+..+|.+.|++++|+.
T Consensus 628 G~~deAl~lf~eM~~~Gv~--PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~ 705 (1060)
T PLN03218 628 GDWDFALSIYDDMKKKGVK--PDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705 (1060)
T ss_pred CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999998876321 125678888889999999999999999988765 4467889999999999999999999
Q ss_pred HHHHHHhh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cCCChhchhccccchhhhcccHHHH
Q psy8682 1819 AYHTALQL--SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ--QAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1819 ~yeKALeL--~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL--dPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
.|+++.+. .| +...|..|...|.+.|++++|+++|++.... .|+ ...|..+-..+...|+..++.
T Consensus 706 lf~eM~~~g~~P-dvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd-~~Ty~sLL~a~~k~G~le~A~ 774 (1060)
T PLN03218 706 LYEDIKSIKLRP-TVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN-TITYSILLVASERKDDADVGL 774 (1060)
T ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHH
Confidence 99988764 34 4677889999999999999999999987654 344 345555555566666665544
No 78
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=99.44 E-value=1.5e-11 Score=162.22 Aligned_cols=294 Identities=12% Similarity=0.004 Sum_probs=237.6
Q ss_pred CCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHH
Q psy8682 1504 PVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSR 1583 (1956)
Q Consensus 1504 ~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYee 1583 (1956)
.+++.|...+++++|.++|..+... +..- |..+. ..+...+++++
T Consensus 264 ~Li~~y~k~g~~~~A~~vf~~m~~~--------------------~~vt-------~n~li--------~~y~~~g~~~e 308 (697)
T PLN03081 264 ALIDMYSKCGDIEDARCVFDGMPEK--------------------TTVA-------WNSML--------AGYALHGYSEE 308 (697)
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCCC--------------------ChhH-------HHHHH--------HHHHhCCCHHH
Confidence 3578899999999999998765432 1122 33433 23444567788
Q ss_pred HHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHH
Q psy8682 1584 NQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAAL 1662 (1956)
Q Consensus 1584 ALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~y 1662 (1956)
|+.. |++.... .-..+...+..+...+.+.|++++|...+..+++.. +.+..++..+...|.+.|++++|...|
T Consensus 309 A~~l--f~~M~~~---g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf 383 (697)
T PLN03081 309 ALCL--YYEMRDS---GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVF 383 (697)
T ss_pred HHHH--HHHHHHc---CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHH
Confidence 8877 6665432 112256688899999999999999999999999876 567788999999999999999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH
Q psy8682 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH 1742 (1956)
Q Consensus 1663 eKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy 1742 (1956)
+++.+ .+...|+.+...|...|+.++|++.|+++.+. ...|+ ..++..+..++...|+.
T Consensus 384 ~~m~~---~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--g~~Pd----------------~~T~~~ll~a~~~~g~~ 442 (697)
T PLN03081 384 DRMPR---KNLISWNALIAGYGNHGRGTKAVEMFERMIAE--GVAPN----------------HVTFLAVLSACRYSGLS 442 (697)
T ss_pred HhCCC---CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCC----------------HHHHHHHHHHHhcCCcH
Confidence 98754 35568999999999999999999999999876 22454 23455667889999999
Q ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1743 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1743 eEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
++|.++|+.+.+..+-. .....|..+..+|.+.|++++|.+.+++.- .. .+..+|..+..++...|+++.|...+++
T Consensus 443 ~~a~~~f~~m~~~~g~~-p~~~~y~~li~~l~r~G~~~eA~~~~~~~~-~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~ 519 (697)
T PLN03081 443 EQGWEIFQSMSENHRIK-PRAMHYACMIELLGREGLLDEAYAMIRRAP-FK-PTVNMWAALLTACRIHKNLELGRLAAEK 519 (697)
T ss_pred HHHHHHHHHHHHhcCCC-CCccchHhHHHHHHhcCCHHHHHHHHHHCC-CC-CCHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 99999999998653322 224678899999999999999999988642 22 3567899999999999999999999999
Q ss_pred HHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1823 ALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1823 ALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
++++.|++...|..|+.+|.+.|++++|.+.++...+..
T Consensus 520 l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 520 LYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999887653
No 79
>PLN03077 Protein ECB2; Provisional
Probab=99.43 E-value=2.5e-11 Score=163.50 Aligned_cols=314 Identities=10% Similarity=-0.004 Sum_probs=204.9
Q ss_pred CCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHH
Q psy8682 1504 PVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSR 1583 (1956)
Q Consensus 1504 ~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYee 1583 (1956)
.+++.|...+++++|+++|..+....+.+....- ..+- . +....++++.
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~----------------~~ll---~------------a~~~~g~~~~ 407 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITI----------------ASVL---S------------ACACLGDLDV 407 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH----------------HHHH---H------------HHhccchHHH
Confidence 3456788889999999999877554443332220 0000 0 1111223333
Q ss_pred HHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1584 NQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1584 ALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
+... +..+.+... ..+...+..+...|.+.|++++|...|++..+ .+..+|..+...|...|+.++|+..|+
T Consensus 408 a~~l--~~~~~~~g~---~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~vs~~~mi~~~~~~g~~~eA~~lf~ 479 (857)
T PLN03077 408 GVKL--HELAERKGL---ISYVVVANALIEMYSKCKCIDKALEVFHNIPE---KDVISWTSIIAGLRLNNRCFEALIFFR 479 (857)
T ss_pred HHHH--HHHHHHhCC---CcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHCCCHHHHHHHHH
Confidence 3333 222222111 11233444455555555555555555554322 233445555555555555555555555
Q ss_pred HHHHhCCCCHHHH-----------------------------------HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCC
Q psy8682 1664 KCLSIEPKNLEAL-----------------------------------MAISICFTNEACLHDALDTLKDKIRPGQESNP 1708 (1956)
Q Consensus 1664 KALeLdPdnaeAl-----------------------------------~~LA~aY~~lGdydEALe~leKALelg~e~dP 1708 (1956)
+++...+.+...+ ..|...|.+.|+.++|...|+.. .
T Consensus 480 ~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~------- 551 (857)
T PLN03077 480 QMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-E------- 551 (857)
T ss_pred HHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-C-------
Confidence 5543322223333 34445555555555555555443 1
Q ss_pred CchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1709 RPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ--CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786 (1956)
Q Consensus 1709 d~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel--~P~n~~~a~a~~~LG~ly~~lGdyeEAie~f 1786 (1956)
....+|..+...|...|+.++|+++|+++.+. .|+ ..++..+-..+.+.|+.++|..+|
T Consensus 552 ---------------~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd----~~T~~~ll~a~~~~g~v~ea~~~f 612 (857)
T PLN03077 552 ---------------KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPD----EVTFISLLCACSRSGMVTQGLEYF 612 (857)
T ss_pred ---------------CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----cccHHHHHHHHhhcChHHHHHHHH
Confidence 12345777889999999999999999998875 344 455667777889999999999999
Q ss_pred HHHHHhCC--CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1787 RSALQVRP--DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1787 ekALel~P--dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
+...+..+ .+...|..+..++.+.|++++|.+.+++. ...|+ ..+|..|-.++...|+.+.|....+++++++|++
T Consensus 613 ~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~ 690 (857)
T PLN03077 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNS 690 (857)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCC
Confidence 99885432 34578999999999999999999999886 34554 6678888888889999999999999999999999
Q ss_pred hhchhccccchhhhcccHHHH
Q psy8682 1865 HDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1865 ~dA~~~LG~l~~~lg~~seAI 1885 (1956)
...|..++.+|...|+..++.
T Consensus 691 ~~~y~ll~n~ya~~g~~~~a~ 711 (857)
T PLN03077 691 VGYYILLCNLYADAGKWDEVA 711 (857)
T ss_pred cchHHHHHHHHHHCCChHHHH
Confidence 999999999999999987765
No 80
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=99.41 E-value=1.1e-12 Score=155.21 Aligned_cols=130 Identities=18% Similarity=0.372 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 815 NWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEM 893 (1956)
Q Consensus 815 lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pks~~LW~kYidfE~k 893 (1956)
+|+.|++|..+.+.++.||.||++|+...+....+|..|+.+|.. .++.+.|+.|||++++..|...++|..|++|+.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~ 82 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK 82 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 799999999999899999999999998777789999999999999 5777779999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhc-----cC-chHHHHHHHHhhcccccchHHHHHHHHHHHhccccC
Q psy8682 894 LENVAGKLFVFHRDS-----IS-QVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCC 946 (1956)
Q Consensus 894 ~Gd~e~aR~VfERAL-----~~-~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~ 946 (1956)
.||.+++|.||||++ .. ...||..|++||.+.+ .+....++.+|...-++-
T Consensus 83 ~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~G--dl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 83 LNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYG--DLESVRKVEKRAEELFPE 139 (280)
T ss_dssp TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTT
T ss_pred hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHhhh
Confidence 999999999999998 22 4579999999999965 677777777776655543
No 81
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.38 E-value=3.6e-11 Score=137.16 Aligned_cols=186 Identities=18% Similarity=0.226 Sum_probs=141.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA---EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE---ALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdna---eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnae---Al~ 1677 (1956)
.++.++.+|..++..|++++|+..|++++..+|+++ .+++.+|.++...|++++|+..|+++++..|++.. +++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 788999999999999999999999999999999875 58899999999999999999999999999998776 688
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1678 AISICFTNE--------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1678 ~LA~aY~~l--------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
.+|.++... |++++|+..+++++.. +|+.... ..+...++....
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~------------~~a~~~~~~~~~------------ 163 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR----YPNSEYA------------PDAKKRMDYLRN------------ 163 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH----CCCChhH------------HHHHHHHHHHHH------------
Confidence 999999876 8899999999999999 7771101 011111111100
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
.. ......+|.+|...|++.+|+..|++++...|+. +.++..+|.++..+|++++|..+++.....
T Consensus 164 --------~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 164 --------RL---AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred --------HH---HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 00 1123456677777777777777777777776543 467777777777777777777777666554
Q ss_pred CC
Q psy8682 1827 SP 1828 (1956)
Q Consensus 1827 ~P 1828 (1956)
.|
T Consensus 233 ~~ 234 (235)
T TIGR03302 233 YP 234 (235)
T ss_pred CC
Confidence 44
No 82
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.37 E-value=4.7e-11 Score=136.21 Aligned_cols=194 Identities=11% Similarity=0.023 Sum_probs=151.3
Q ss_pred hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCc
Q psy8682 1634 QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRP 1710 (1956)
Q Consensus 1634 ldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~ 1710 (1956)
.++..+..++.+|..+...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..++++++. .|+
T Consensus 28 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~- 102 (235)
T TIGR03302 28 VEEWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL----HPN- 102 (235)
T ss_pred cccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcC-
Confidence 3455678899999999999999999999999999998875 57788999999999999999999999988 666
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSSR--------EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l--------GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.+....+++.+|.++... |++++|+..++++++.+|++ ..++..+..+.. ....
T Consensus 103 -----------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~a~~~~~~----~~~~ 164 (235)
T TIGR03302 103 -----------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNS---EYAPDAKKRMDY----LRNR 164 (235)
T ss_pred -----------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCC---hhHHHHHHHHHH----HHHH
Confidence 234556788888888876 78888999999999888887 333322211111 0000
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.......+|.++...|++.+|+..|++++...|+ ...+++.+|.++..+|++++|..+++....
T Consensus 165 -------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 165 -------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred -------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 0122357889999999999999999999998765 468999999999999999999998888776
Q ss_pred hcCC
Q psy8682 1860 QQAA 1863 (1956)
Q Consensus 1860 LdPd 1863 (1956)
..|+
T Consensus 232 ~~~~ 235 (235)
T TIGR03302 232 NYPD 235 (235)
T ss_pred hCCC
Confidence 6553
No 83
>KOG1127|consensus
Probab=99.36 E-value=6.6e-12 Score=159.79 Aligned_cols=343 Identities=15% Similarity=0.157 Sum_probs=244.5
Q ss_pred CCCcccccccccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhc
Q psy8682 1488 QTGPLFSNGVASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESL 1567 (1956)
Q Consensus 1488 ~~~~lf~~a~aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~ 1567 (1956)
.+++.|+.+.+.+|+. |....+..+|..||...-..+- + +...|..+ -+.+.
T Consensus 486 rld~~~apaf~~LG~i-----Yrd~~Dm~RA~kCf~KAFeLDa----t-------------daeaaaa~---adtya--- 537 (1238)
T KOG1127|consen 486 RLDVSLAPAFAFLGQI-----YRDSDDMKRAKKCFDKAFELDA----T-------------DAEAAAAS---ADTYA--- 537 (1238)
T ss_pred hcccchhHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCc----h-------------hhhhHHHH---HHHhh---
Confidence 5788899999998876 8888888889888765443331 1 11111111 11111
Q ss_pred CCCCCChhhhhhhHHHHHhchhhHhHhhhhccCC-CccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1568 GSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNP-MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLG 1646 (1956)
Q Consensus 1568 ~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP-~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA 1646 (1956)
-..+.+.|... .+....+.| ......|..+|..|...++...|+..|+.++..+|.+..+|..+|
T Consensus 538 ---------e~~~we~a~~I-----~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLG 603 (1238)
T KOG1127|consen 538 ---------EESTWEEAFEI-----CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLG 603 (1238)
T ss_pred ---------ccccHHHHHHH-----HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHH
Confidence 11222333222 111111111 113347788999999999999999999999999999999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhH
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLA 1726 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a 1726 (1956)
.+|...|+|..|++.|.+|..++|.+.-+.+..+.+....|+|.+|+..+...+.. ... +.... ...+
T Consensus 604 eAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~----~s~---e~~~q-----~gLa 671 (1238)
T KOG1127|consen 604 EAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYA----FSL---ERTGQ-----NGLA 671 (1238)
T ss_pred HHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHH---HHHhh-----hhHH
Confidence 99999999999999999999999999999999999999999999999999888876 211 11111 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------------------------------------------------
Q psy8682 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQC-------------------------------------------------- 1756 (1956)
Q Consensus 1727 ~a~lnLA~ay~~lGdyeEAle~LekALel~-------------------------------------------------- 1756 (1956)
..+...+..+...|-+.+|...++++++..
T Consensus 672 E~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~ 751 (1238)
T KOG1127|consen 672 ESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGA 751 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhccc
Confidence 344444444444444444444443332210
Q ss_pred -CCC----------------CCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1757 -PSQ----------------SIDPDVQNGLGVLFNL--------SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1757 -P~n----------------~~~a~a~~~LG~ly~~--------lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
|++ ...+..|+++|.-|++ +.+...|+.++.+++++..++...|+.||.+ ...|
T Consensus 752 l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~g 830 (1238)
T KOG1127|consen 752 LKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIG 830 (1238)
T ss_pred CcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccc
Confidence 000 0114467778877665 1233478899999999999999999999988 5568
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++.-|..+|-+++...|.....|.++|.++....+++-|...|.++..++|.+...|...+.+...+|..-+..
T Consensus 831 nva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~ 904 (1238)
T KOG1127|consen 831 NVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERL 904 (1238)
T ss_pred hhhhhhhhhhhhhhccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999888888888887777654443
No 84
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.35 E-value=5.9e-12 Score=135.05 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=117.4
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
..+++++++++|++ +..+|.++...|++++|+.+|++++..+|.+..++..+|.++...|++++|+..|+++++
T Consensus 13 ~~~~~~al~~~p~~------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 13 EDILKQLLSVDPET------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHcCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 46788999998875 667899999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
++|+++.+++++|.++..+|++++|+..|++++++.|+++..+.++|.+..
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988876543
No 85
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.34 E-value=3.4e-10 Score=131.81 Aligned_cols=257 Identities=15% Similarity=0.128 Sum_probs=218.0
Q ss_pred HHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHcCChH
Q psy8682 1582 SRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSLGISLAENEQDP 1656 (1956)
Q Consensus 1582 eeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~LA~ay~~lGdye 1656 (1956)
++|+.. |-..++ .+|. ..++.+.+|..+...|..+.||.+-+..+.. |+. ..+++.||.-|+..|-++
T Consensus 52 dKAvdl--F~e~l~---~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 52 DKAVDL--FLEMLQ---EDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred chHHHH--HHHHHh---cCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 455555 434343 4555 6789999999999999999999998776654 543 458899999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
.|...|....+...--..++..|..+|....++++|++.-++..++ .+. .| ....+..+..+|..+
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~----~~q--~~--------~~eIAqfyCELAq~~ 190 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKL----GGQ--TY--------RVEIAQFYCELAQQA 190 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHc----CCc--cc--------hhHHHHHHHHHHHHH
Confidence 9999999988765555678999999999999999999999999998 444 01 124566677899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHH
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~qlGryeE 1815 (1956)
....+.+.|...+.+|++.+|+. ..+-..+|.++...|+|++|++.++.+++.+|+. +.+...|..+|.++|+.++
T Consensus 191 ~~~~~~d~A~~~l~kAlqa~~~c---vRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~ 267 (389)
T COG2956 191 LASSDVDRARELLKKALQADKKC---VRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE 267 (389)
T ss_pred hhhhhHHHHHHHHHHHHhhCccc---eehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence 99999999999999999999999 8889999999999999999999999999999985 5788899999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+..+.++.+..++ ..+-..++..-....-.++|..++.+-+...|+
T Consensus 268 ~~~fL~~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt 314 (389)
T COG2956 268 GLNFLRRAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLRRKPT 314 (389)
T ss_pred HHHHHHHHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCc
Confidence 99999999998776 345556677767777788999999999999998
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.33 E-value=5.3e-10 Score=134.70 Aligned_cols=292 Identities=10% Similarity=0.020 Sum_probs=201.6
Q ss_pred hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----
Q psy8682 1580 DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD---- 1655 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy---- 1655 (1956)
+++.+... +.++.+..+.+.. ..+..+..|..+...|++++|+..++++++.+|++..++.. +..+...|++
T Consensus 21 ~~~~~~~~--~~~~~~~~~~~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~ 96 (355)
T cd05804 21 ERPAAAAK--AAAAAQALAARAT-ERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMR 96 (355)
T ss_pred CcchHHHH--HHHHHHHhccCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCc
Confidence 34444444 5556665665554 66778889999999999999999999999999999887775 5555555544
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
..+...+......+|....++..+|.++...|++++|...+++++++ +|+ ....+..+|.+
T Consensus 97 ~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----~p~---------------~~~~~~~la~i 157 (355)
T cd05804 97 DHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL----NPD---------------DAWAVHAVAHV 157 (355)
T ss_pred hhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCC---------------CcHHHHHHHHH
Confidence 44444444433456777778888999999999999999999999999 776 23456788999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHH---HHHHHHHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--DSRLWN---RLGASLAN 1809 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--naeA~~---nLG~ay~q 1809 (1956)
+...|++++|+.++.+++...|.. ......+..+|.++..+|++++|+..|++++...|. ...... .+...+..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL 237 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence 999999999999999999987743 112345678999999999999999999999876662 221111 22223334
Q ss_pred CCChHHHHHH--H-HHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------Chhchhccccch
Q psy8682 1810 GNRPEEAVEA--Y-HTALQLSPG--FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA---------THDGLTPHGLEP 1875 (1956)
Q Consensus 1810 lGryeEAie~--y-eKALeL~Pd--naeA~~~LA~ay~klGdyEEAie~yekALeLdPd---------n~dA~~~LG~l~ 1875 (1956)
.|....+... . .......+. ........+.++...|+.++|...++......-. .......++.++
T Consensus 238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~ 317 (355)
T cd05804 238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYA 317 (355)
T ss_pred cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHH
Confidence 4443333332 1 111111122 2223346788889999999999999887664432 233455667777
Q ss_pred hhhcccHHHHHHHHHhcccc
Q psy8682 1876 RAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1876 ~~lg~~seAIws~Lr~Al~l 1895 (1956)
...|++.+++ ..|..++..
T Consensus 318 ~~~g~~~~A~-~~L~~al~~ 336 (355)
T cd05804 318 FAEGNYATAL-ELLGPVRDD 336 (355)
T ss_pred HHcCCHHHHH-HHHHHHHHH
Confidence 7888887776 556655443
No 87
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.27 E-value=3.2e-10 Score=136.52 Aligned_cols=206 Identities=16% Similarity=0.069 Sum_probs=158.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
.+.++..+|..+...|+.+.|...+.++.+..+.+ .+..+..+.++...|++++|...++++++.+|++..++.. +
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~ 83 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-H 83 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-h
Confidence 55688888988888898999888888888777644 4567778888889999999999999999999988877665 5
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
..+...|.+..+.....+++... .|. .+........+|.++...|++++|+..+++++++.|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~---~~~------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~- 147 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW---APE------------NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD- 147 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc---CcC------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-
Confidence 56666665555555444444320 111 23345566678888888889999999999998888888
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----RLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----eA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
..++..+|.++...|++++|+.++++++...|..+ ..+..+|.++..+|++++|+..|++++...|
T Consensus 148 --~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 148 --AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred --cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence 77888888888888999999998888888776432 3456788888888999889888888877666
No 88
>PLN03077 Protein ECB2; Provisional
Probab=99.27 E-value=1.2e-09 Score=147.59 Aligned_cols=290 Identities=11% Similarity=0.032 Sum_probs=230.8
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
+++.|...+++++|+++|..+...+. . - |..+. ..+...+++++|
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m~~~d~-----v---------------s-------~~~mi--------~~~~~~g~~~eA 474 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNIPEKDV-----I---------------S-------WTSII--------AGLRLNNRCFEA 474 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCe-----e---------------e-------HHHHH--------HHHHHCCCHHHH
Confidence 56889999999999999886654321 1 1 33333 233344567778
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP-DNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP-dnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
+.. |++...- ..| +...+..+-.++...|+.+.+...+..+++..- .+...+..+...|.+.|+.++|...|+
T Consensus 475 ~~l--f~~m~~~--~~p--d~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~ 548 (857)
T PLN03077 475 LIF--FRQMLLT--LKP--NSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548 (857)
T ss_pred HHH--HHHHHhC--CCC--CHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHH
Confidence 877 7776532 122 455777788888999999999999999987642 345567788899999999999999998
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH
Q psy8682 1664 KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ 1743 (1956)
Q Consensus 1664 KALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye 1743 (1956)
.. +.+..+|..+...|...|+.++|++.|+++.+. +..|+.. ++..+...+...|+.+
T Consensus 549 ~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~--g~~Pd~~----------------T~~~ll~a~~~~g~v~ 606 (857)
T PLN03077 549 SH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVES--GVNPDEV----------------TFISLLCACSRSGMVT 606 (857)
T ss_pred hc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCcc----------------cHHHHHHHHhhcChHH
Confidence 86 557779999999999999999999999999876 2355522 2344457888999999
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+|..+|+.+.+..+-. .....|..+..++.+.|++++|.+.+++. .+.|+ ..+|..|-.++...|+.+.|....+++
T Consensus 607 ea~~~f~~M~~~~gi~-P~~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l 683 (857)
T PLN03077 607 QGLEYFHSMEEKYSIT-PNLKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHI 683 (857)
T ss_pred HHHHHHHHHHHHhCCC-CchHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 9999999998554332 22678999999999999999999999885 34454 677888888888999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+++.|++...+..|+.+|...|++++|.+..+...+.
T Consensus 684 ~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 684 FELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999887654
No 89
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.24 E-value=3.2e-10 Score=128.10 Aligned_cols=125 Identities=22% Similarity=0.304 Sum_probs=118.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHCCC--hHH
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL-ANGNR--PEE 1815 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay-~qlGr--yeE 1815 (1956)
.++.++++..++++++.+|++ ...|..+|.+|...|++++|+.+|++++++.|+++.++..+|.++ ...|+ +++
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~---~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~ 128 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN---SEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQ 128 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHH
Confidence 677789999999999999999 999999999999999999999999999999999999999999975 67787 599
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
|...++++++.+|++..+++.+|.++...|++++|+.+|++++++.|.+.+
T Consensus 129 A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~ 179 (198)
T PRK10370 129 TREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVN 179 (198)
T ss_pred HHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence 999999999999999999999999999999999999999999999998554
No 90
>KOG1130|consensus
Probab=99.24 E-value=2.4e-11 Score=143.32 Aligned_cols=265 Identities=14% Similarity=0.156 Sum_probs=199.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHH
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNA----EVWLSLGISLAENEQDPQAIAALSKCLSIE------PKNLEALM 1677 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdna----eAl~~LA~ay~~lGdyeEALe~yeKALeLd------PdnaeAl~ 1677 (1956)
+-..|.-+++.|++...+.+|+.|++...++. .+|..||.+|..+++|++|+++-..-+.+. -..+.+--
T Consensus 20 LalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 20 LALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 34568889999999999999999999987764 467899999999999999998865433321 22334567
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH---------------
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH--------------- 1742 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy--------------- 1742 (1956)
+||+.+...|.|++|+.++.+-+.. -..+... .....+++++|.+|...|+.
T Consensus 100 NLGNtlKv~G~fdeA~~cc~rhLd~----------areLgDr---v~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~e 166 (639)
T KOG1130|consen 100 NLGNTLKVKGAFDEALTCCFRHLDF----------ARELGDR---VLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAE 166 (639)
T ss_pred cccchhhhhcccchHHHHHHHHhHH----------HHHHhHH---HhhhHHHhhhhhhhhhcccccCCCChhhcccccHH
Confidence 8999999999999999999998877 3333311 23567889999999866643
Q ss_pred -----HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHH
Q psy8682 1743 -----QQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD------DSRLWNRLGASLA 1808 (1956)
Q Consensus 1743 -----eEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd------naeA~~nLG~ay~ 1808 (1956)
+.|.++|..-+++.... .....++-+||..|+.+|+|++|+..-+.-+.+... .-.++.++|.++.
T Consensus 167 v~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi 246 (639)
T KOG1130|consen 167 VTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI 246 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh
Confidence 33444444444443221 112356778888999999999999998887776533 2368889999999
Q ss_pred HCCChHHHHHHHHHHHhhC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------Chhchhccccchh
Q psy8682 1809 NGNRPEEAVEAYHTALQLS----PG--FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA------THDGLTPHGLEPR 1876 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~----Pd--naeA~~~LA~ay~klGdyEEAie~yekALeLdPd------n~dA~~~LG~l~~ 1876 (1956)
-+|+++.|+++|++++.+. .. .+...|.||..|.-+.++++|+.|+.+-|.+... ...+++.+|..+.
T Consensus 247 flg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~ 326 (639)
T KOG1130|consen 247 FLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFN 326 (639)
T ss_pred hhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999999999999987642 22 3556789999999999999999999988876543 3347778888888
Q ss_pred hhcccHHHH
Q psy8682 1877 AVKEMSDSI 1885 (1956)
Q Consensus 1877 ~lg~~seAI 1885 (1956)
.+|+...++
T Consensus 327 alg~h~kAl 335 (639)
T KOG1130|consen 327 ALGEHRKAL 335 (639)
T ss_pred hhhhHHHHH
Confidence 888877765
No 91
>KOG1914|consensus
Probab=99.23 E-value=2.4e-10 Score=139.28 Aligned_cols=236 Identities=17% Similarity=0.156 Sum_probs=163.5
Q ss_pred cccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCC----CCChHHHHHHHH-------HHhhcccHHHH
Q psy8682 683 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ----SIDPDVQNGLGV-------LFNLSDEYDKA 751 (1956)
Q Consensus 683 k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~----~~d~dV~~~La~-------Ly~~sgeyEkA 751 (1956)
+|-.+|+-|++-++.- .=.+.|--...+++|.++|.+|+..--.. =.|++.+..=++ +-+++.+|-+|
T Consensus 126 ~s~siW~eYi~FL~~v-ea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~A 204 (656)
T KOG1914|consen 126 KSYSIWDEYINFLEGV-EAVGKYEENQRITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNA 204 (656)
T ss_pred ccchhHHHHHHHHHcc-cccccHHHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHH
Confidence 5677899999988732 22223333447888999999999873321 013333333222 22567888899
Q ss_pred HHHHHHHHhh------C-CC-----------CHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCH
Q psy8682 752 VDCFRSALQV------R-PD-----------FTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVI 813 (1956)
Q Consensus 752 relFerALkk------f-P~-----------d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~ 813 (1956)
|.+++..... . |. ..++|.++++...+.+ .+.+.-.-+-.|..-+||+++...+.++
T Consensus 205 R~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNp-----L~t~~~~~~~~Rv~yayeQ~ll~l~~~p 279 (656)
T KOG1914|consen 205 RRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNP-----LRTLDGTMLTRRVMYAYEQCLLYLGYHP 279 (656)
T ss_pred HHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCC-----cccccccHHHHHHHHHHHHHHHHHhcCH
Confidence 9999886542 1 11 1678988887766433 2222223345577788999999999999
Q ss_pred HHHHHHHHHHHHcCC--------------HHHHHHHHHHhhcccC-----------------------------------
Q psy8682 814 SNWIKYAQWEESQKQ--------------VDRARSIYERALDVDH----------------------------------- 844 (1956)
Q Consensus 814 ~lWlkYAqfE~~~Gd--------------~ErARsIfERALs~~P----------------------------------- 844 (1956)
++|..|+.|-...++ -++++++|||++...-
T Consensus 280 eiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~ 359 (656)
T KOG1914|consen 280 EIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLK 359 (656)
T ss_pred HHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHh
Confidence 999999999877666 6889999998876110
Q ss_pred ---CC-HHHHHHHHHHHHHcCChHHHHHHHHHH-----------------------------------HHhCCCCHHHHH
Q psy8682 845 ---RN-ITLWLKYTELEMRNRQVNHARNLWDRA-----------------------------------VTILPRANQFWY 885 (1956)
Q Consensus 845 ---k~-~dLWl~YadfE~k~gnierARsLFERA-----------------------------------L~~~Pks~~LW~ 885 (1956)
.. .-+|.+|+.+-.+...++.||.||.+| ++..++.+.+-.
T Consensus 360 ~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~ 439 (656)
T KOG1914|consen 360 IEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVL 439 (656)
T ss_pred hhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHH
Confidence 11 124888888877777777778777775 455688888888
Q ss_pred HHHHHHHHcCCHHHHHHHHHhhccC------chHHHHHHHHhhcc
Q psy8682 886 KYTYMEEMLENVAGKLFVFHRDSIS------QVTLWLGALTLSLE 924 (1956)
Q Consensus 886 kYidfE~k~Gd~e~aR~VfERAL~~------~~~LWl~Yi~fEle 924 (1956)
+|++|....|+.+++|.+|||++++ ...||..+++||-.
T Consensus 440 ~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 440 KYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 9999999999999999999998833 33566666666555
No 92
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.21 E-value=2.1e-10 Score=123.10 Aligned_cols=113 Identities=14% Similarity=0.052 Sum_probs=107.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
+..+|.++...|++++|+.+|++++..+|.+ ..++..+|.++...|++++|+..|++++.++|+++.+++++|.++.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~---~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~ 103 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWS---WRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLK 103 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4567999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.+|++++|+..|++++++.|+++..+.++|.+...+
T Consensus 104 ~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 104 MMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999988877654
No 93
>KOG0128|consensus
Probab=99.21 E-value=9.7e-11 Score=148.30 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=165.4
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHhCCC-CCCChHHHHHHHHHHhhcccHHH---HHHHHHHHHhhCCCCHHH
Q psy8682 693 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-QSIDPDVQNGLGVLFNLSDEYDK---AVDCFRSALQVRPDFTEL 768 (1956)
Q Consensus 693 ~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~-~~~d~dV~~~La~Ly~~sgeyEk---ArelFerALkkfP~d~~I 768 (1956)
..++|+....-+.++++..+.--+...+.++...+ .+.++..++.|+.|+...|++++ |+..|+.+++.+|..|..
T Consensus 73 ~s~~~sSe~~~ds~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl~kl~~ar~~~~~~~pl~~~lWl~ 152 (881)
T KOG0128|consen 73 SSLESSSEVSMDSDSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDLEKLRQARLEMSEIAPLPPHLWLE 152 (881)
T ss_pred ccCCccCcccccccCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCChHHHHH
Confidence 45566666555555555555333333333333111 13489999999999999999988 677777766555555555
Q ss_pred HHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHhhc
Q psy8682 769 LVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ-------KQVDRARSIYERALD 841 (1956)
Q Consensus 769 Wl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~-------Gd~ErARsIfERALs 841 (1956)
|+.-...+. ...+ ...+-.+|++++.. +.++.+|..|+.|.... +++++.|.+|+|+|.
T Consensus 153 Wl~d~~~mt------~s~~-------~~~v~~~~ekal~d-y~~v~iw~e~~~y~~~~~~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 153 WLKDELSMT------QSEE-------RKEVEELFEKALGD-YNSVPIWEEVVNYLVGFGNVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred HHHHHHhhc------cCcc-------hhHHHHHHHHHhcc-cccchHHHHHHHHHHhccccccccccchhhhHHHHHHHh
Confidence 544443322 1122 23455689999988 88999999999997643 578999999999998
Q ss_pred ----ccCCCHHHHHHHHHHHHHc--------------------------------------------------CChHHHH
Q psy8682 842 ----VDHRNITLWLKYTELEMRN--------------------------------------------------RQVNHAR 867 (1956)
Q Consensus 842 ----~~Pk~~dLWl~YadfE~k~--------------------------------------------------gnierAR 867 (1956)
+..+...||..|.+||... .+....+
T Consensus 219 s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el~~~~D~~~~~~~~~~~sk~h~~~~~~~~~~~a~~~l~~~~ 298 (881)
T KOG0128|consen 219 SLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVRELKQPLDEDTRGWDLSEQSKAHVYDVETKKLDDALKNLAKIL 298 (881)
T ss_pred hhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcchHHHHhccHHHHHHHHHHHH
Confidence 5668889999999985421 0112233
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc---cCchHHHHHHH---HhhcccccchHHHHHHHHHHHh
Q psy8682 868 NLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS---ISQVTLWLGAL---TLSLEGLGSNLQSWVRFLARDV 941 (1956)
Q Consensus 868 sLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL---~~~~~LWl~Yi---~fEle~~~~~lk~~~r~l~ral 941 (1956)
..|++.+...|-....|..|++||.+.|++.+...+++|++ .-..++|+.|- +.|++.. +.-++...+++
T Consensus 299 ~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~----~~~~~~~~ra~ 374 (881)
T KOG0128|consen 299 FKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVP----QRGVSVHPRAV 374 (881)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccc----cccccccchhh
Confidence 34555555555567889999999999999999999999998 56689999882 2244432 33466777888
Q ss_pred cccc-Ccccee
Q psy8682 942 GECC-CGQVVS 951 (1956)
Q Consensus 942 kec~-~g~~~~ 951 (1956)
|.|| .|++-+
T Consensus 375 R~cp~tgdL~~ 385 (881)
T KOG0128|consen 375 RSCPWTGDLWK 385 (881)
T ss_pred cCCchHHHHHH
Confidence 8888 777654
No 94
>KOG1130|consensus
Probab=99.20 E-value=6.1e-11 Score=140.01 Aligned_cols=276 Identities=13% Similarity=0.113 Sum_probs=207.9
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGIS 1648 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA~a 1648 (1956)
...++++..-+.. |++|++...++-..-..+|..+|.+|+..++|.+|+++-.--+.+ .-..+.+--+||.+
T Consensus 27 Lck~gdcraGv~f--f~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNt 104 (639)
T KOG1130|consen 27 LCKMGDCRAGVDF--FKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNT 104 (639)
T ss_pred HHhccchhhhHHH--HHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccch
Confidence 4456678888877 889998887776655667888999999999999999986544432 22345667789999
Q ss_pred HHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCH-------------HHHHHHHHHHHhcCCCCCCC
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEP------KNLEALMAISICFTNEACL-------------HDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdP------dnaeAl~~LA~aY~~lGdy-------------dEALe~leKALelg~e~dPd 1709 (1956)
+..+|.|++|+-+..+-+.+.. ....+++++|.+|...|+. +++...++.+++.
T Consensus 105 lKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~f------- 177 (639)
T KOG1130|consen 105 LKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKF------- 177 (639)
T ss_pred hhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHH-------
Confidence 9999999999999988776542 2346899999999887651 2344444444433
Q ss_pred chhhhhhcC-cchh---hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1710 PSAYKADAL-PSKL---TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1710 ~eay~~Ll~-~~Kl---~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
|..-+. ..++ .....++-+||+.|+-+|+|+.|+..-+.-+.+.... .....++.++|.++.-+|+++.|
T Consensus 178 ---y~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A 254 (639)
T KOG1130|consen 178 ---YMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELA 254 (639)
T ss_pred ---HHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhH
Confidence 221110 0001 2334567789999999999999999888877765432 12346889999999999999999
Q ss_pred HHHHHHHHHhC----CC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1783 VDCFRSALQVR----PD--DSRLWNRLGASLANGNRPEEAVEAYHTALQLSP------GFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1783 ie~fekALel~----Pd--naeA~~nLG~ay~qlGryeEAie~yeKALeL~P------dnaeA~~~LA~ay~klGdyEEA 1850 (1956)
+++|+.++.+. .. .+...+.||..|.-..++++|+.++.+-+.+.. ....+++.||.++..+|..++|
T Consensus 255 ~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA 334 (639)
T KOG1130|consen 255 IEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA 334 (639)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence 99999987653 22 356788999999999999999999999877642 3467899999999999999999
Q ss_pred HHHHHHHHHhcC
Q psy8682 1851 VEHFLTALNQQA 1862 (1956)
Q Consensus 1851 ie~yekALeLdP 1862 (1956)
+.+.++.+++.-
T Consensus 335 l~fae~hl~~s~ 346 (639)
T KOG1130|consen 335 LYFAELHLRSSL 346 (639)
T ss_pred HHHHHHHHHHHH
Confidence 999988887643
No 95
>KOG1156|consensus
Probab=99.19 E-value=1.8e-09 Score=134.46 Aligned_cols=242 Identities=13% Similarity=0.089 Sum_probs=123.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.+|..+.-.+..++|...+...+.+++..|.+++.+...|..+..+|+-++|..+...++..++.....|..+|.++...
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d 88 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD 88 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
.+|++|+++|+.|+.+ .|+ ....+..++.+..+.++++.....-.+.++..|.. ...|
T Consensus 89 K~Y~eaiKcy~nAl~~----~~d---------------N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~---ra~w 146 (700)
T KOG1156|consen 89 KKYDEAIKCYRNALKI----EKD---------------NLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ---RASW 146 (700)
T ss_pred hhHHHHHHHHHHHHhc----CCC---------------cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh---HHHH
Confidence 5555555555555555 444 22223444455555555555555555555555554 4555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---CCC-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVR---PDD-----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~---Pdn-----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
...+..+...|++..|....+...+.. |.. ..+......+....|.+++|++.+.+--..--+........|
T Consensus 147 ~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka 226 (700)
T KOG1156|consen 147 IGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKA 226 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHH
Confidence 555555555555555555554444332 111 122333334444455555544444332221112222333445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
.++.+++++++|...|...+..+|++.+-+..
T Consensus 227 ~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~ 258 (700)
T KOG1156|consen 227 DLLMKLGQLEEAVKVYRRLLERNPDNLDYYEG 258 (700)
T ss_pred HHHHHHhhHHhHHHHHHHHHhhCchhHHHHHH
Confidence 55555555555555555555555555544333
No 96
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.13 E-value=2e-08 Score=127.85 Aligned_cols=278 Identities=14% Similarity=0.051 Sum_probs=204.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
..+.++..+.++...|++++|+..++.....-.+....+-..|.++..+|++++|...|...|+.+|++...+..+..+.
T Consensus 3 ~SE~lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~ 82 (517)
T PF12569_consen 3 HSELLLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL 82 (517)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 34678889999999999999999999988888888899999999999999999999999999999999999998888887
Q ss_pred HHcC-----CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc----hh-------------hhhHHHHHHHHHHHHhcCC
Q psy8682 1684 TNEA-----CLHDALDTLKDKIRPGQESNPRPSAYKADALPS----KL-------------TRLANHTLTFRSPLSSREI 1741 (1956)
Q Consensus 1684 ~~lG-----dydEALe~leKALelg~e~dPd~eay~~Ll~~~----Kl-------------~e~a~a~lnLA~ay~~lGd 1741 (1956)
.... ..+.-...|++.... .|.......+.... .. ...+....++-.+|....+
T Consensus 83 g~~~~~~~~~~~~~~~~y~~l~~~----yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 83 GLQLQLSDEDVEKLLELYDELAEK----YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK 158 (517)
T ss_pred hhhcccccccHHHHHHHHHHHHHh----CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH
Confidence 3332 466677788877766 55522221111000 00 1122223334444443333
Q ss_pred HHHHHHHHHHHHHh---CC----------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1742 HQQVLSLYLNAARQ---CP----------SQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1742 yeEAle~LekALel---~P----------~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
..-...++...... .. .. .....+++.+|..|...|++++|+.+.++|+...|..++.|...|.++
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 33333333333221 10 00 011356788999999999999999999999999999999999999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh-------chh--ccccchhhh
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD-------GLT--PHGLEPRAV 1878 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d-------A~~--~LG~l~~~l 1878 (1956)
...|++.+|..+++.|-.+++.+-......+..+.+.|+.++|...+....+-+-+... .|+ .-|..+.+.
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~ 318 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQ 318 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888888999999999999999988877655431111 222 236666777
Q ss_pred cccHHHH
Q psy8682 1879 KEMSDSI 1885 (1956)
Q Consensus 1879 g~~seAI 1885 (1956)
|++..|+
T Consensus 319 ~~~~~AL 325 (517)
T PF12569_consen 319 GDYGLAL 325 (517)
T ss_pred hhHHHHH
Confidence 7776665
No 97
>KOG1128|consensus
Probab=99.13 E-value=8.9e-10 Score=138.52 Aligned_cols=223 Identities=15% Similarity=0.130 Sum_probs=196.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.......+|..+...|-...|+..|++. ..|-....+|...|+..+|.....+-++ .|.++..|..+|.+.
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVL 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhc
Confidence 3446678899999999999999999985 5677899999999999999999999998 677777888888887
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
.+..-|++|.++.+.... .+...+|......++|+++.++++.+++++|-. .
T Consensus 468 ~d~s~yEkawElsn~~sa-------------------------rA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq---~ 519 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISA-------------------------RAQRSLALLILSNKDFSEADKHLERSLEINPLQ---L 519 (777)
T ss_pred cChHHHHHHHHHhhhhhH-------------------------HHHHhhccccccchhHHHHHHHHHHHhhcCccc---h
Confidence 777666666666654322 244556667777899999999999999999988 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
..|+.+|.+..+.++++.|.++|..++.++|++..+|++++.+|...|+-.+|...+.+|++-+-++...|.|.-.+..+
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999998889999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCC
Q psy8682 1844 LGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPd 1863 (1956)
.|.+++|++.|.+.+.+..+
T Consensus 600 vge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred cccHHHHHHHHHHHHHhhhh
Confidence 99999999999999877544
No 98
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.12 E-value=2.1e-09 Score=140.69 Aligned_cols=145 Identities=10% Similarity=0.034 Sum_probs=137.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+....++.+||.+....|++++|...++.++++.|++ ..+...++.++.+++++++|+..+++++..+|+++.+++.
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~---~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS---SEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence 3457889999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
+|.++.++|++++|+.+|++++..+|++..++..+|.++...|+.++|...|++|++...+-...+.+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998775555443
No 99
>KOG1127|consensus
Probab=99.12 E-value=2.2e-09 Score=137.55 Aligned_cols=222 Identities=15% Similarity=0.156 Sum_probs=193.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~le 1697 (1956)
+.+...|...|-+++++++..+.++..||.+|....+...|..+|++|.++++.+..+....+..|....+++.|...+-
T Consensus 471 rK~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred hhhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999977
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG 1777 (1956)
.+-+. .|. ......+..+|-.|.+.+++..|+..|+.+++.+|.+ ...|..+|.+|...|
T Consensus 551 ~~~qk----a~a-------------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD---~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 551 RAAQK----APA-------------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKD---YNLWLGLGEAYPESG 610 (1238)
T ss_pred HHhhh----chH-------------HHHHhhhhhccccccCccchhhHHHHHHHHhcCCchh---HHHHHHHHHHHHhcC
Confidence 76666 444 1223345568899999999999999999999999999 999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHcCCHHHH
Q psy8682 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------FVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1778 dyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-------naeA~~~LA~ay~klGdyEEA 1850 (1956)
+|..|++.|.+|..++|.+....+..+......|+|.+|+..+...+..... .++.+..++..+...|=+..|
T Consensus 611 ry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~ka 690 (1238)
T KOG1127|consen 611 RYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKA 690 (1238)
T ss_pred ceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999999998876544 345556666666666666667
Q ss_pred HHHHHHHHH
Q psy8682 1851 VEHFLTALN 1859 (1956)
Q Consensus 1851 ie~yekALe 1859 (1956)
..+++++++
T Consensus 691 vd~~eksie 699 (1238)
T KOG1127|consen 691 VDFFEKSIE 699 (1238)
T ss_pred hHHHHHHHH
Confidence 777666654
No 100
>KOG1156|consensus
Probab=99.11 E-value=1.1e-08 Score=127.64 Aligned_cols=288 Identities=14% Similarity=0.106 Sum_probs=217.2
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
++|...+.. .+..+.-.|.++ +.+-..|..+...|+-++|..+.+.++..++....+|+.+|.++...++|++|
T Consensus 21 kQYkkgLK~--~~~iL~k~~eHg----eslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 21 KQYKKGLKL--IKQILKKFPEHG----ESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHhHHHH--HHHHHHhCCccc----hhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHH
Confidence 456665655 455555445544 48889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+++|+.|+.++|+|...+..++.+...+++++.....-.+.++. .|. .-..|...|.++..
T Consensus 95 iKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~---------------~ra~w~~~Avs~~L 155 (700)
T KOG1156|consen 95 IKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPS---------------QRASWIGFAVAQHL 155 (700)
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhh---------------hHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988 555 23346778899999
Q ss_pred cCCHHHHHHHHHHHHHhC---CCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1739 REIHQQVLSLYLNAARQC---PSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~---P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.|++..|...++...+.. |.. ............++...|.+++|.+.+..--..--+........|.++.+++++
T Consensus 156 ~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~l 235 (700)
T KOG1156|consen 156 LGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQL 235 (700)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhH
Confidence 999999999888877665 322 011234455566777888888888877654333333444556678999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV-EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi-e~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
++|+..|...+..+|++...+..+-.++.+-.+.-+++ ..|...-+..|. ...-..++.....-.+..+.+..+++.-
T Consensus 236 EeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r-~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 236 EEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPR-HECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred HhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcc-cccchhccHHHhCcchhHHHHHHHHHHH
Confidence 99999999999999999999888888886333344444 555555444444 2333333333333344455555555543
No 101
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.11 E-value=9.2e-10 Score=114.81 Aligned_cols=117 Identities=21% Similarity=0.236 Sum_probs=112.0
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+.|++++..+|++ ..+...+|..+...|++++|+..+++++..+|.++.++..+|.++..+|++++|+.+|++++..
T Consensus 4 ~~~~~~l~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 4 ATLKDLLGLDSEQ---LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hhHHHHHcCChhh---HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4678899999998 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+|.+...++.+|.++...|++++|+..|+++++++|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 9999999999999999999999999999999999998765
No 102
>KOG1914|consensus
Probab=99.10 E-value=1.8e-09 Score=131.89 Aligned_cols=190 Identities=16% Similarity=0.245 Sum_probs=148.4
Q ss_pred HHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHH
Q psy8682 719 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRK 798 (1956)
Q Consensus 719 ~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RA 798 (1956)
.+-++.||. |-+.|..|+.-+... .++++|+.|++.+..||..+..|..|++.+. +....++.
T Consensus 10 ~~rie~nP~---di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El-------------~skdfe~V 72 (656)
T KOG1914|consen 10 RERIEENPY---DIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIEREL-------------ASKDFESV 72 (656)
T ss_pred HHHHhcCCc---cHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-------------HhhhHHHH
Confidence 566788997 999999998877766 9999999999999999999999999997665 33345567
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHH-cCCHHHHHHHH----HHhhc---ccCCCHHHHHHHHHHHH---------HcC
Q psy8682 799 RKAFEDNIRKNRMVISNWIKYAQWEES-QKQVDRARSIY----ERALD---VDHRNITLWLKYTELEM---------RNR 861 (1956)
Q Consensus 799 R~lyEraL~~~~~s~~lWlkYAqfE~~-~Gd~ErARsIf----ERALs---~~Pk~~dLWl~YadfE~---------k~g 861 (1956)
.++|.|||.+ ..+.++|.-|..+-.+ .|+....|... +=++. ..+++..||..|+.|-. .+.
T Consensus 73 EkLF~RCLvk-vLnlDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~Q 151 (656)
T KOG1914|consen 73 EKLFSRCLVK-VLNLDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQ 151 (656)
T ss_pred HHHHHHHHHH-HhhHhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHH
Confidence 7899999998 6779999999999664 55555555544 43443 57899999999999832 223
Q ss_pred ChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC-------------CHHHHHHHHHhhc-------------c-----
Q psy8682 862 QVNHARNLWDRAVTILPR-ANQFWYKYTYMEEMLE-------------NVAGKLFVFHRDS-------------I----- 909 (1956)
Q Consensus 862 nierARsLFERAL~~~Pk-s~~LW~kYidfE~k~G-------------d~e~aR~VfERAL-------------~----- 909 (1956)
.++.+|.+|.||+...-. ..++|..|..||...+ +..+||+++.... |
T Consensus 152 RI~~vRriYqral~tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~ 231 (656)
T KOG1914|consen 152 RITAVRRIYQRALVTPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTK 231 (656)
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCh
Confidence 788999999999985333 3899999999998742 3467777776532 1
Q ss_pred ---CchHHHHHHHHhhcccc
Q psy8682 910 ---SQVTLWLGALTLSLEGL 926 (1956)
Q Consensus 910 ---~~~~LWl~Yi~fEle~~ 926 (1956)
...++|+.||+.|.+.+
T Consensus 232 ~e~~qv~~W~n~I~wEksNp 251 (656)
T KOG1914|consen 232 DEIQQVELWKNWIKWEKSNP 251 (656)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 12458999999998874
No 103
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.10 E-value=4.4e-08 Score=117.52 Aligned_cols=250 Identities=18% Similarity=0.155 Sum_probs=196.2
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
..-++..-+.+.-.+|+++.|-.++.++-+..++ ...+...++.++...|+++.|.....++++..|.++.++.....+
T Consensus 117 p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~ 196 (400)
T COG3071 117 PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRA 196 (400)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 4457777788889999999999999999988544 456788899999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCC-----chhhhhhcCcc------------------hhhhhHHHHHHHHHHHHhc
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPR-----PSAYKADALPS------------------KLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd-----~eay~~Ll~~~------------------Kl~e~a~a~lnLA~ay~~l 1739 (1956)
|...|++.+...++.+.-+.+.-.++. ...|..++... +....+.....++.-+...
T Consensus 197 y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l 276 (400)
T COG3071 197 YIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRL 276 (400)
T ss_pred HHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHc
Confidence 999999999999988877663222332 11121111110 1233344455667778889
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ 1819 (1956)
|+.++|.+...++++..-+. .....++. ..-+++..=++..++.++..|+++.++..||..+.+.+.+.+|..+
T Consensus 277 ~~~~~A~~~i~~~Lk~~~D~----~L~~~~~~--l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~ 350 (400)
T COG3071 277 GDHDEAQEIIEDALKRQWDP----RLCRLIPR--LRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEA 350 (400)
T ss_pred CChHHHHHHHHHHHHhccCh----hHHHHHhh--cCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999998876654 32222222 3568888888888999999999999999999999999999999999
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
|+.|++..|+ ...+..+|.++.++|+..+|.+.+++++.+
T Consensus 351 leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 351 LEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 9998888775 566788899999999999999999988854
No 104
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.08 E-value=5.2e-09 Score=138.17 Aligned_cols=226 Identities=10% Similarity=0.007 Sum_probs=169.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---------- 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---------- 1673 (1956)
..+++..++..+...+++++|+..++.+++..|+...+++.+|.++.+.+++.+|.-. .++...+.+.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~ 107 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICD 107 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHH
Confidence 6679999999999999999999999999999999999999999999999988776655 5555544443
Q ss_pred ---------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHH
Q psy8682 1674 ---------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQ 1744 (1956)
Q Consensus 1674 ---------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeE 1744 (1956)
.+++.||.||..+|+.++|...|+++++. +|+ .+.+..++|..|... ++++
T Consensus 108 ~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----D~~---------------n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 108 KILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA----DRD---------------NPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred HHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc----Ccc---------------cHHHHHHHHHHHHHh-hHHH
Confidence 77888888888888888888888888888 555 455667777777777 8888
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH--------------------HHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL--------------------WNRLG 1804 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA--------------------~~nLG 1804 (1956)
|+.++.+|+.. +...++|.++..++.+.+..+|.+... +.-+=
T Consensus 168 A~~m~~KAV~~-----------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~ 230 (906)
T PRK14720 168 AITYLKKAIYR-----------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLY 230 (906)
T ss_pred HHHHHHHHHHH-----------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHH
Confidence 88888877654 334456666666666666666664432 22233
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc--------------------CCHHHHHHHHHHHHHhcCCC
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL--------------------GANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl--------------------GdyEEAie~yekALeLdPdn 1864 (1956)
..|...+++++++..++.+++.+|.+..+...++.+|... ..+..|+..|++.+..++++
T Consensus 231 ~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~s~l~~~~~~~~~~i~~fek~i~f~~G~ 310 (906)
T PRK14720 231 EPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKMSDIGNNRKPVKDCIADFEKNIVFDTGN 310 (906)
T ss_pred HHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHHhccccCCccHHHHHHHHHHHeeecCCC
Confidence 6677788888888888888888888888888888887632 12456667777777777765
Q ss_pred hhch
Q psy8682 1865 HDGL 1868 (1956)
Q Consensus 1865 ~dA~ 1868 (1956)
.-.+
T Consensus 311 yv~H 314 (906)
T PRK14720 311 FVYH 314 (906)
T ss_pred EEEE
Confidence 5433
No 105
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.08 E-value=3.2e-09 Score=139.01 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+++.-+.......|.+ +.++.+||.+....|.+++|...++.++++.|++..++.+++.++.+++++++|+..++++
T Consensus 70 ~~~~~~~~~~~~~~~~---~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 70 AALPELLDYVRRYPHT---ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred hhHHHHHHHHHhcccc---HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3333344444557777 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+..+|++..+++.+|.++.++|++++|+.+|++++..+|+++.++..+|.++...|+..+|. ..++.|+...+..
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~-~~~~~a~~~~~~~ 221 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRAR-DVLQAGLDAIGDG 221 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhhCcc
Confidence 99999999999999999999999999999999999999999999999999999999998887 7788887777654
No 106
>KOG1258|consensus
Probab=99.08 E-value=1e-09 Score=136.66 Aligned_cols=113 Identities=19% Similarity=0.379 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHH
Q psy8682 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEM-RNRQVNHARNLWDRAV 874 (1956)
Q Consensus 796 ~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~-k~gnierARsLFERAL 874 (1956)
..+|.+|..+|...|.+..+|.+||.+|.+.|..+.+..||||+|...|.+++||..|+.+.. ..|+.+..|.+||+|+
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~ 141 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAK 141 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999999999999999999999999999999855 4688888999999999
Q ss_pred HhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 875 TILPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 875 ~~~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
...... ..||.+||+||..+++..++-.||+|.|
T Consensus 142 ~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRil 178 (577)
T KOG1258|consen 142 SYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERIL 178 (577)
T ss_pred HhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 976653 8999999999999999999999999988
No 107
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=99.06 E-value=5e-09 Score=138.33 Aligned_cols=232 Identities=9% Similarity=-0.009 Sum_probs=190.4
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch-
Q psy8682 1633 KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS- 1711 (1956)
Q Consensus 1633 eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e- 1711 (1956)
..+|.+..++..|+..|...+++++|+..++.+++..|+...+++.+|.++...+++.+|... .++.. .+...
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~----~~~~~~ 98 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDS----FSQNLK 98 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhh----cccccc
Confidence 346889999999999999999999999999999999999999999999999999999998887 66666 33211
Q ss_pred ------hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1712 ------AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1712 ------ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
.+..+. ..+..-.+++.+|.+|.++|+.++|...|+++++.+|++ +.+++++|..|... +.++|+.+
T Consensus 99 ~~~ve~~~~~i~---~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n---~~aLNn~AY~~ae~-dL~KA~~m 171 (906)
T PRK14720 99 WAIVEHICDKIL---LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN---PEIVKKLATSYEEE-DKEKAITY 171 (906)
T ss_pred hhHHHHHHHHHH---hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHh-hHHHHHHH
Confidence 111121 124555688999999999999999999999999999999 99999999999999 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH--------------------HHHHHHHHHHcC
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA--------------------RYNLGITCVHLG 1845 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA--------------------~~~LA~ay~klG 1845 (1956)
+.+|+.. +...++|.++..++.+.+..+|++.+. +.-+-..|...+
T Consensus 172 ~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~ 237 (906)
T PRK14720 172 LKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALE 237 (906)
T ss_pred HHHHHHH--------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhh
Confidence 9999876 666778999999999999888886543 222337788889
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHh
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRG 1891 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~ 1891 (1956)
++++++..++.+|+.+|+|..+...++.+|...-.-...+..+++.
T Consensus 238 ~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~kY~~~~~~ee~l~~ 283 (906)
T PRK14720 238 DWDEVIYILKKILEHDNKNNKAREELIRFYKEKYKDHSLLEDYLKM 283 (906)
T ss_pred hhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHHccCcchHHHHHHH
Confidence 9999999999999999999999998888876432222334444443
No 108
>KOG1128|consensus
Probab=99.06 E-value=3.9e-09 Score=132.88 Aligned_cols=218 Identities=18% Similarity=0.169 Sum_probs=185.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
....-..+|.++...|-...|+..|++. ..|.....||...|+..+|.....+-++. +|+
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~lek----~~d-------- 456 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELEK----DPD-------- 456 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhcC----CCc--------
Confidence 3445678999999999999999999885 36778889999999999999999998886 555
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
+..|..+|+.-.=-.+|+++.++...- ...+...+|......++|.+|.++++..++++|-..
T Consensus 457 ---------------~~lyc~LGDv~~d~s~yEkawElsn~~--sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~ 519 (777)
T KOG1128|consen 457 ---------------PRLYCLLGDVLHDPSLYEKAWELSNYI--SARAQRSLALLILSNKDFSEADKHLERSLEINPLQL 519 (777)
T ss_pred ---------------chhHHHhhhhccChHHHHHHHHHhhhh--hHHHHHhhccccccchhHHHHHHHHHHHhhcCccch
Confidence 233444444444445555665554331 255677778878889999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
..|+.+|.+..+.+++..|.++|.+++.+.|++..+|.+++.+|.++|+..+|...+++|++.+-++...|-|.-.+...
T Consensus 520 ~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 520 GTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVD 599 (777)
T ss_pred hHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccHHHHHHHHHhc
Q psy8682 1878 VKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1878 lg~~seAIws~Lr~A 1892 (1956)
.|+.++++..+-+..
T Consensus 600 vge~eda~~A~~rll 614 (777)
T KOG1128|consen 600 VGEFEDAIKAYHRLL 614 (777)
T ss_pred cccHHHHHHHHHHHH
Confidence 999999985555543
No 109
>KOG0553|consensus
Probab=99.02 E-value=2e-09 Score=125.34 Aligned_cols=134 Identities=28% Similarity=0.277 Sum_probs=119.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..-|.-+++.++|.+|+..|.+|++++|.+ +..|.++|.+|.++|+|+.|++.++.|+.++|....+|..|
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n---AVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RL 155 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN---AVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRL 155 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHH
Confidence 345566778999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHh
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT---QAVEHFLTALNQ 1860 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyE---EAie~yekALeL 1860 (1956)
|.+|..+|++++|++.|+++|+++|++.....+|..+-.++++.. .+...++.+..+
T Consensus 156 G~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~i 215 (304)
T KOG0553|consen 156 GLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLI 215 (304)
T ss_pred HHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhc
Confidence 999999999999999999999999999998889988888887766 444444444333
No 110
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.02 E-value=1.3e-08 Score=115.06 Aligned_cols=122 Identities=12% Similarity=0.112 Sum_probs=72.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHH
Q psy8682 1652 NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731 (1956)
Q Consensus 1652 lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ln 1731 (1956)
.++.++++..++++++.+|++..+|..+|.+|...|++++|+..|++++++ +|+ ....+..
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----~P~---------------~~~~~~~ 112 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL----RGE---------------NAELYAA 112 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHHH
Confidence 455566666666666666666666666666666666666666666666666 444 2334445
Q ss_pred HHHHH-HhcCC--HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1732 FRSPL-SSREI--HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1732 LA~ay-~~lGd--yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
+|.++ ...|+ +++|...++++++.+|++ ..++..+|.++...|++++|+.+++++++..|.
T Consensus 113 lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~---~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~ 176 (198)
T PRK10370 113 LATVLYYQAGQHMTPQTREMIDKALALDANE---VTALMLLASDAFMQADYAQAIELWQKVLDLNSP 176 (198)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55543 34444 355666666666666655 555566666666666666666666666555544
No 111
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.01 E-value=7.2e-08 Score=130.67 Aligned_cols=307 Identities=12% Similarity=-0.044 Sum_probs=209.3
Q ss_pred hhhHHHHHhchhhHhHhhhhcc-----CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHHHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAED-----NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSLGI 1647 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~-----NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~LA~ 1647 (1956)
.++++++... +..+...... .+.........+|..+...|++++|...+++++...+.. ..+...+|.
T Consensus 422 ~g~~~~a~~~--l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~ 499 (903)
T PRK04841 422 QHRYSEVNTL--LARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE 499 (903)
T ss_pred CCCHHHHHHH--HHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence 3455665555 4444432221 122234556668889999999999999999999865442 235678899
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcch
Q psy8682 1648 SLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721 (1956)
Q Consensus 1648 ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~K 1721 (1956)
++...|++++|...+.+++...... ..++..+|.++...|++++|...+++++.. ........
T Consensus 500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~----------~~~~~~~~- 568 (903)
T PRK04841 500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL----------IEEQHLEQ- 568 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHhcccc-
Confidence 9999999999999999998764321 235678899999999999999999999987 11111000
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---
Q psy8682 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD--- 1796 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn--- 1796 (1956)
.+.....+..+|.++...|++++|...+.+++...... ......+..+|.++...|++++|...+.++..+....
T Consensus 569 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~ 648 (903)
T PRK04841 569 LPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYH 648 (903)
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 01122335568899999999999999999998764321 1124566778999999999999999999997753321
Q ss_pred HHHHH----HHHHHHHHCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-----
Q psy8682 1797 SRLWN----RLGASLANGNRPEEAVEAYHTALQLSPGFV----RARYNLGITCVHLGANTQAVEHFLTALNQQAA----- 1863 (1956)
Q Consensus 1797 aeA~~----nLG~ay~qlGryeEAie~yeKALeL~Pdna----eA~~~LA~ay~klGdyEEAie~yekALeLdPd----- 1863 (1956)
..... .....+...|+.+.|...+.......+... ..+..++.++...|++++|...+++++.....
T Consensus 649 ~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~ 728 (903)
T PRK04841 649 SDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS 728 (903)
T ss_pred HhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH
Confidence 11111 122344557788888877766554322211 12456788888888888888888888776322
Q ss_pred -ChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1864 -THDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1864 -n~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
...++..+|.++...|+..++. ..+..|+.+...
T Consensus 729 ~~a~~~~~la~a~~~~G~~~~A~-~~L~~Al~la~~ 763 (903)
T PRK04841 729 DLNRNLILLNQLYWQQGRKSEAQ-RVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCc
Confidence 2235667777778888876666 677777666544
No 112
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=2.6e-09 Score=127.40 Aligned_cols=257 Identities=14% Similarity=0.055 Sum_probs=186.7
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..|+|.|..++.. ++ ..+.++....+..+.+.+++..+|+++..+.-... ..+....+...++..+...++
T Consensus 11 ~fy~G~Y~~~i~e--~~----~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~ 81 (290)
T PF04733_consen 11 QFYLGNYQQCINE--AS----LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSD 81 (290)
T ss_dssp HHCTT-HHHHCHH--HH----CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTT
T ss_pred HHHhhhHHHHHHH--hh----ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccc
Confidence 4678899999865 22 33445554677888899999999998877655543 223344566677776665566
Q ss_pred hHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEP--KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALeLdP--dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
.+.++..++..+.... .+.......|.++...|++++|++.+.+.- ..+.....
T Consensus 82 ~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~~------------------------~lE~~al~ 137 (290)
T PF04733_consen 82 KESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKGG------------------------SLELLALA 137 (290)
T ss_dssp HHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTTT------------------------CHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHccC------------------------cccHHHHH
Confidence 6777776665543332 344556667788888999999987765431 12233445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD--EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG--dyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
..++...++++.|.+.++.+.+.+.+. ..+....|.+....| ++.+|...|++.....+..+.+++.++.+++.+
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~eD~---~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~ 214 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDEDS---ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQL 214 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSCCH---HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcH---HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 688999999999999999998887765 434444444544555 699999999998888888999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhcCCChhc
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN-TQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy-EEAie~yekALeLdPdn~dA 1867 (1956)
|++++|...+.+++..+|+++.++.+++.+...+|+. +.+.+++.+....+|+++-.
T Consensus 215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~ 272 (290)
T PF04733_consen 215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLV 272 (290)
T ss_dssp T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHH
T ss_pred CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHH
Confidence 9999999999999999999999999999999999998 66778888888899997753
No 113
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.00 E-value=1.4e-07 Score=120.09 Aligned_cols=277 Identities=11% Similarity=0.045 Sum_probs=194.0
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-- 1653 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-- 1653 (1956)
.-.++|++|+.. +.+.... -......+-.+|.++.+.|++++|...|+..++.+|++...+..+..+.....
T Consensus 15 ~e~g~~~~AL~~--L~~~~~~----I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 15 EEAGDYEEALEH--LEKNEKQ----ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHCCCHHHHHHH--HHhhhhh----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence 334677888876 4332222 22144577789999999999999999999999999999999999988884333
Q ss_pred ---ChHHHHHHHHHHHHhCCCCHH--------------------------------HHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1654 ---QDPQAIAALSKCLSIEPKNLE--------------------------------ALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1654 ---dyeEALe~yeKALeLdPdnae--------------------------------Al~~LA~aY~~lGdydEALe~leK 1698 (1956)
..+.-...|+......|.... ...++-.+|....+..-....+..
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~ 168 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEE 168 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHH
Confidence 456667888877666664321 111222222211111111112222
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDE 1778 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGd 1778 (1956)
.+... ............. ........++++.+|..|...|++++|+++++++++..|.. ++.+...|.++...|+
T Consensus 169 ~~~~l-~~~~~~~~~~~~~-~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~---~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 169 YVNSL-ESNGSFSNGDDEE-KEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTL---VELYMTKARILKHAGD 243 (517)
T ss_pred HHHhh-cccCCCCCccccc-cCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCc---HHHHHHHHHHHHHCCC
Confidence 11110 0000000000000 00011245678899999999999999999999999999998 9999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--c-------HHHHHHHHHHHHHcCCHHH
Q psy8682 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--F-------VRARYNLGITCVHLGANTQ 1849 (1956)
Q Consensus 1779 yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--n-------aeA~~~LA~ay~klGdyEE 1849 (1956)
+.+|...++.|-.+++.+-.+....+..+.+.|+.++|...+..-...+.+ . .......|.+|.+.|++..
T Consensus 244 ~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 999999999999999999999999999999999999999988876554421 1 1223456999999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy8682 1850 AVEHFLTALNQQAA 1863 (1956)
Q Consensus 1850 Aie~yekALeLdPd 1863 (1956)
|++.|..+.+..-+
T Consensus 324 ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 324 ALKRFHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876443
No 114
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.00 E-value=2.3e-08 Score=114.94 Aligned_cols=176 Identities=21% Similarity=0.226 Sum_probs=126.1
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
+...+-+....+|++..+ .+++..+...|+-+.+..+..++... .|+ .......+|....
T Consensus 52 a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~----~~~---------------d~~ll~~~gk~~~ 111 (257)
T COG5010 52 AAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA----YPK---------------DRELLAAQGKNQI 111 (257)
T ss_pred HHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhcc----Ccc---------------cHHHHHHHHHHHH
Confidence 445555555666777766 77777777777777777766665554 333 1222233667777
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
..|++.+|+..++++..+.|++ ..+|..+|.+|.+.|++++|...|.+++++.|+++.+..|+|..|.-.|+++.|.
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d---~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~ 188 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTD---WEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAE 188 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCC---hhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHH
Confidence 7777777777777777777777 7777788888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yek 1856 (1956)
.++..+....+.+..+..+|+.+....|++++|.....+
T Consensus 189 ~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 189 TLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888777777777777777888888888887777655443
No 115
>KOG3060|consensus
Probab=98.97 E-value=7.4e-08 Score=110.05 Aligned_cols=186 Identities=13% Similarity=0.166 Sum_probs=140.4
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
++.-..+-....+....|+.+-|..++++.....|.+..+....|..+...|.+++|+++|+..++. +|. .
T Consensus 49 ~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d----dpt---~-- 119 (289)
T KOG3060|consen 49 DEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLED----DPT---D-- 119 (289)
T ss_pred chHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc----Ccc---h--
Confidence 3334455566666777788888888888877777888777777788888888888888888888877 666 1
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
...+...-.+...+|+..+|++.+...++.++.+ .++|..++.+|...|+|++|.-||++.+-+.|.
T Consensus 120 ----------~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D---~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~ 186 (289)
T KOG3060|consen 120 ----------TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND---QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF 186 (289)
T ss_pred ----------hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC
Confidence 1112233345556777778888888888888888 888888888888888888888888888888888
Q ss_pred CHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1796 DSRLWNRLGASLANGN---RPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlG---ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
++..+..+|.+++-+| ++.-|.++|.++++++|.+..+++.+-.+...
T Consensus 187 n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 187 NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 8888888888887665 46678888888888888777777766555443
No 116
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.96 E-value=4.2e-08 Score=112.85 Aligned_cols=177 Identities=20% Similarity=0.212 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1623 SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1623 EAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
.+...+-+....+|++..+ ..++..+...|+-+.+..+..++...+|.+...+..+|......|+|.+|+..++++...
T Consensus 51 ~a~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l 129 (257)
T COG5010 51 GAAAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL 129 (257)
T ss_pred HHHHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc
Confidence 3555666666778888888 888888888888888888888888888888888878888888888888888888888888
Q ss_pred CCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1703 GQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1703 g~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.|+ ...++..+|.+|.+.|++++|...|.+++++.|.+ +.+..++|..|...|+++.|
T Consensus 130 ----~p~---------------d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~---p~~~nNlgms~~L~gd~~~A 187 (257)
T COG5010 130 ----APT---------------DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE---PSIANNLGMSLLLRGDLEDA 187 (257)
T ss_pred ----CCC---------------ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC---chhhhhHHHHHHHcCCHHHH
Confidence 555 45566778888888888888888888888888888 88889999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
..++..+....+.+..+..+|+.+...+|++++|...-.+
T Consensus 188 ~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 188 ETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 9999998888888888999999999999999888776554
No 117
>KOG0553|consensus
Probab=98.96 E-value=2.4e-09 Score=124.70 Aligned_cols=119 Identities=20% Similarity=0.336 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.-+-.-|.-+++.++|.+|+..|.+||+++|.++..|.+.|.+|.++|.++.|++.++.|+.++|.+..+|..||.+|..
T Consensus 82 E~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~ 161 (304)
T KOG0553|consen 82 ESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA 161 (304)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc
Confidence 34555677788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccH
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMS 1882 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~s 1882 (1956)
+|++++|++.|++||.++|++...+.+|..+...+++..
T Consensus 162 ~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 162 LGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999988888877665555443
No 118
>KOG3060|consensus
Probab=98.95 E-value=1.3e-07 Score=108.09 Aligned_cols=183 Identities=11% Similarity=0.017 Sum_probs=159.1
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1668 LdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
+.++.-..+-....+....|+.+-|..++++.-.. .|. - .......|..+...|++++|++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----fp~---S------------~RV~~lkam~lEa~~~~~~A~e 107 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----FPG---S------------KRVGKLKAMLLEATGNYKEAIE 107 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCC---C------------hhHHHHHHHHHHHhhchhhHHH
Confidence 44555666777788888999999999999998877 555 1 1223345788889999999999
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1748 ~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+|+..+.-+|.+ ..++-..-.+...+|+.-+|++.+.+.++..+.+.++|..++.+|...|+|++|.-+|++.+-+.
T Consensus 108 ~y~~lL~ddpt~---~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~ 184 (289)
T KOG3060|consen 108 YYESLLEDDPTD---TVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ 184 (289)
T ss_pred HHHHHhccCcch---hHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC
Confidence 999999999998 77777777788889999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1828 PGFVRARYNLGITCVHLG---ANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klG---dyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
|.++..+..+|.+++-+| +++-|.++|.++++++|.+..+++.+-
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~ 232 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIY 232 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHH
Confidence 999999999999998877 577899999999999997777766553
No 119
>KOG1258|consensus
Probab=98.92 E-value=7.2e-08 Score=120.65 Aligned_cols=200 Identities=18% Similarity=0.232 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHH
Q psy8682 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790 (1956)
Q Consensus 711 ~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Ee 790 (1956)
.+.+..+|...+...|- -+--|-++|.+-..-|..+++.++|++++..+|-+..+|+.|..|+.. ..++++.
T Consensus 61 ~~~~r~~y~~fL~kyPl---~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n-----~~~d~~~ 132 (577)
T KOG1258|consen 61 VDALREVYDIFLSKYPL---CYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKN-----NNGDPET 132 (577)
T ss_pred HHHHHHHHHHHHhhCcc---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-----cCCCHHH
Confidence 35566666666655553 677789999999999999999999999999999999999999999872 3456553
Q ss_pred hhHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcc----cCCCHHHHHHHHHH-------
Q psy8682 791 LRDYQHRKRKAFEDNIRKN---RMVISNWIKYAQWEESQKQVDRARSIYERALDV----DHRNITLWLKYTEL------- 856 (1956)
Q Consensus 791 a~~~~~RAR~lyEraL~~~---~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~----~Pk~~dLWl~Yadf------- 856 (1956)
.|.+||+|+..+ ..+..+|-+|+.||..+++..+.-.||+|.|.. ++...+-|.++++-
T Consensus 133 -------lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~ 205 (577)
T KOG1258|consen 133 -------LRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILL 205 (577)
T ss_pred -------HHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhc
Confidence 567888888766 456799999999999999999999999998872 33344445555332
Q ss_pred ------------HHH-----------------------cCChHHH------------------------HHHHHHHHHh-
Q psy8682 857 ------------EMR-----------------------NRQVNHA------------------------RNLWDRAVTI- 876 (1956)
Q Consensus 857 ------------E~k-----------------------~gnierA------------------------RsLFERAL~~- 876 (1956)
..+ .+..+.+ |..||-.++.
T Consensus 206 ~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~Ikrp 285 (577)
T KOG1258|consen 206 SIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRP 285 (577)
T ss_pred CHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhcccc
Confidence 000 0001111 1112222221
Q ss_pred ----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc---cCchHHHHHHHHhhccc
Q psy8682 877 ----LPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS---ISQVTLWLGALTLSLEG 925 (1956)
Q Consensus 877 ----~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL---~~~~~LWl~Yi~fEle~ 925 (1956)
.|-. .+.|..|++|+++.||.+++-.+|+|++ ....++|+.|+++-...
T Consensus 286 Yfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~ 344 (577)
T KOG1258|consen 286 YFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESS 344 (577)
T ss_pred ccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHc
Confidence 1211 5568888888888888888888888887 56677888888875553
No 120
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.91 E-value=2.2e-07 Score=125.97 Aligned_cols=276 Identities=11% Similarity=0.006 Sum_probs=202.7
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccC-CCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDN-PMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLG 1646 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~N-P~~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA 1646 (1956)
.....++++++... ++.++...+.. ......+...+|..+...|++++|...+++++...... ..++..+|
T Consensus 461 ~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 461 VAINDGDPEEAERL--AELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHhCCCHHHHHHH--HHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 34456788888887 77777643322 21123466778999999999999999999998764321 34667889
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIEPK--------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLdPd--------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.++...|++++|...+++++..... ....+..+|.++...|++++|...+.+++.. ... ..
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~----~~~------~~- 607 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV----LSN------YQ- 607 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----hhc------cC-
Confidence 9999999999999999999886321 1234567889999999999999999999887 111 11
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ----NGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~----~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.......+..+|.++...|++++|...+.++..+........... ......+...|+.+.|...+.......+
T Consensus 608 ---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~ 684 (903)
T PRK04841 608 ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEF 684 (903)
T ss_pred ---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCC
Confidence 012334566789999999999999999999987644320001111 1122445568999999999877665332
Q ss_pred CCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1795 DDS----RLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1795 dna----eA~~nLG~ay~qlGryeEAie~yeKALeL~------PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
... ..+..+|.++...|++++|...+++++... .....++..+|.++...|+.++|..++.+|+++....
T Consensus 685 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 685 ANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 222 225678999999999999999999998852 1234678899999999999999999999999988654
Q ss_pred h
Q psy8682 1865 H 1865 (1956)
Q Consensus 1865 ~ 1865 (1956)
.
T Consensus 765 g 765 (903)
T PRK04841 765 G 765 (903)
T ss_pred c
Confidence 3
No 121
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.88 E-value=4e-08 Score=102.56 Aligned_cols=107 Identities=21% Similarity=0.261 Sum_probs=100.7
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
.....+.+|..+...|++++|+..+++++..+|.+ +.++..+|.++..+|++++|+.++++++..+|.++..++.+|
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN---SRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 44567889999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
.++...|++++|+..|+++++++|++....
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 122 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEICGENPEYS 122 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence 999999999999999999999999876533
No 122
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.86 E-value=1.1e-08 Score=122.22 Aligned_cols=258 Identities=12% Similarity=0.042 Sum_probs=187.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEP-DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldP-dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
+.++-.|+|..++.-++ ....++ ........+.+++..+|+++..+.-... ..+....+...++..+...++.+.
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~---~~~~~l~av~~la~y~~~~~~~e~ 84 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKK---SSSPELQAVRLLAEYLSSPSDKES 84 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-T---TSSCCCHHHHHHHHHHCTSTTHHC
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhcc---CCChhHHHHHHHHHHHhCccchHH
Confidence 45567899999998777 333333 2355778899999999998877655433 223334456667766655456666
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
++..++..+.. ... ..........|.++...|++++|++.+.+. .+ .+.......
T Consensus 85 ~l~~l~~~~~~----~~~-------------~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~-----~~---lE~~al~Vq 139 (290)
T PF04733_consen 85 ALEELKELLAD----QAG-------------ESNEIVQLLAATILFHEGDYEEALKLLHKG-----GS---LELLALAVQ 139 (290)
T ss_dssp HHHHHHHCCCT----S----------------CHHHHHHHHHHHHCCCCHHHHHHCCCTTT-----TC---HHHHHHHHH
T ss_pred HHHHHHHHHHh----ccc-------------cccHHHHHHHHHHHHHcCCHHHHHHHHHcc-----Cc---ccHHHHHHH
Confidence 66666555433 100 012223455678888999999999988764 34 677778889
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN--RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG--ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEE 1849 (1956)
+|..+++++.|.+.++.+-+.+.+...+....+.+....| ++.+|...|++..+..+..+..+..++.++..+|++++
T Consensus 140 i~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 140 ILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998888776666666666666655 69999999999888888889999999999999999999
Q ss_pred HHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1850 Aie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|...+++++..+|++++++.++..+...+|+..+.+..++.......+.+
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999998999998777767777665555554
No 123
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.84 E-value=2.7e-08 Score=107.96 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
.+..+.+|..+...|++++|+..|+-+..++|.+...|++||.++..+|++.+|+.+|.+|+.++|+++.+++++|.|+.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCC
Q psy8682 1843 HLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPd 1863 (1956)
..|+.+.|.+.|+.|+...-+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhcc
Confidence 999999999999999988744
No 124
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.83 E-value=2.4e-08 Score=122.42 Aligned_cols=113 Identities=14% Similarity=0.092 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
+...|..++..|++++|+.+|.++++++|.+ +.+++.+|.+|..+|++++|+..+++++.++|+++.+++.+|.+|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~---~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNN---AELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 4556777777777777777777777777777 7777777777777777777777777777777777777777777777
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.+|++++|+..|+++++++|++..+...++.+..++
T Consensus 82 ~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 82 KLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 777777777777777777777777777766665544
No 125
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.82 E-value=2.3e-06 Score=103.17 Aligned_cols=265 Identities=15% Similarity=0.105 Sum_probs=205.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK-NLEALMAISICF 1683 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd-naeAl~~LA~aY 1683 (1956)
+......|..-+..|+|.+|.....++-+..+...-++..-+.+.-+.|+++.|-.++.++-+..++ ...+...++.+.
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4456677888888999999999999988877777778888889999999999999999999998544 445678899999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-------
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC------- 1756 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~------- 1756 (1956)
...|++..|.....++++. .|. .. ........+|...|++.+...++.+.-+..
T Consensus 164 l~~~d~~aA~~~v~~ll~~----~pr---~~------------~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~ 224 (400)
T COG3071 164 LNRRDYPAARENVDQLLEM----TPR---HP------------EVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEA 224 (400)
T ss_pred HhCCCchhHHHHHHHHHHh----CcC---Ch------------HHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHH
Confidence 9999999999999999999 676 22 222334566677777766666655442211
Q ss_pred -------------------------------CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1757 -------------------------------PSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1757 -------------------------------P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
|.. ...+.+...++.-+..+|++++|.+....+++..-+.. ....++
T Consensus 225 ~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~ 303 (400)
T COG3071 225 ARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIP 303 (400)
T ss_pred HHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHh
Confidence 110 12255666677778899999999999999998765433 222222
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDS 1884 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seA 1884 (1956)
...-+++..=++..++.++..|+++..+..||..+.+.+.+.+|..+|+.|++..|+ ...+..+|.++.++|+..++
T Consensus 304 --~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 --RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEA 380 (400)
T ss_pred --hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHH
Confidence 245688888899999999999999999999999999999999999999999999987 44678888888888888665
Q ss_pred HHHHHHhcc
Q psy8682 1885 IWYSLRGFH 1893 (1956)
Q Consensus 1885 Iws~Lr~Al 1893 (1956)
- ...+.++
T Consensus 381 ~-~~r~e~L 388 (400)
T COG3071 381 E-QVRREAL 388 (400)
T ss_pred H-HHHHHHH
Confidence 4 4444444
No 126
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.79 E-value=8e-08 Score=117.88 Aligned_cols=114 Identities=16% Similarity=0.198 Sum_probs=108.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+...|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..+++++.++|++..+++.+|.+|..+|
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 55678889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhccccchhhhc
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg 1879 (1956)
++++|+.+|++++.++|+++.+...++.+...+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998888766553
No 127
>KOG2376|consensus
Probab=98.79 E-value=8.8e-07 Score=110.21 Aligned_cols=309 Identities=10% Similarity=0.041 Sum_probs=197.8
Q ss_pred HHHHHHHHHhcCCCCCChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Q psy8682 1557 NSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP 1636 (1956)
Q Consensus 1557 q~~we~l~kr~~s~~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP 1636 (1956)
...|..+.+.+ --++|++|+.. ..+.+...|+ +..+....-.++.+.++|++|+...+.-....-
T Consensus 13 ~~l~t~ln~~~---------~~~e~e~a~k~--~~Kil~~~pd----d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~ 77 (652)
T KOG2376|consen 13 EALLTDLNRHG---------KNGEYEEAVKT--ANKILSIVPD----DEDAIRCKVVALIQLDKYEDALKLIKKNGALLV 77 (652)
T ss_pred HHHHHHHHHhc---------cchHHHHHHHH--HHHHHhcCCC----cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh
Confidence 45666666544 35789999987 6677766554 444888999999999999999955443322111
Q ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC---chhh
Q psy8682 1637 DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR---PSAY 1713 (1956)
Q Consensus 1637 dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd---~eay 1713 (1956)
. ....+..|.|.+++++.++|+..++ -+++.+..++...|.+++++|+|++|+..|+..++. +.+ .+.-
T Consensus 78 ~-~~~~fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn----~~dd~d~~~r 149 (652)
T KOG2376|consen 78 I-NSFFFEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN----NSDDQDEERR 149 (652)
T ss_pred c-chhhHHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc----CCchHHHHHH
Confidence 1 1223789999999999999999998 456666678888999999999999999999999876 222 0000
Q ss_pred --------------hhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-----CC-------CCCHHHHH
Q psy8682 1714 --------------KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP-----SQ-------SIDPDVQN 1767 (1956)
Q Consensus 1714 --------------~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P-----~n-------~~~a~a~~ 1767 (1956)
...... ......+.+++.|.++...|+|.+|++.+++++++.. ++ .....+..
T Consensus 150 ~nl~a~~a~l~~~~~q~v~~-v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~Irv 228 (652)
T KOG2376|consen 150 ANLLAVAAALQVQLLQSVPE-VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRV 228 (652)
T ss_pred HHHHHHHHhhhHHHHHhccC-CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHH
Confidence 000000 0123556788999999999999999999999955421 11 01234677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH------------------------------------------------
Q psy8682 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL------------------------------------------------ 1799 (1956)
Q Consensus 1768 ~LG~ly~~lGdyeEAie~fekALel~PdnaeA------------------------------------------------ 1799 (1956)
.++.++..+|+.++|...|...++.+|.+...
T Consensus 229 QlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~ 308 (652)
T KOG2376|consen 229 QLAYVLQLQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQA 308 (652)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 88999999999999999999999877654311
Q ss_pred -HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-hhchhccccchhh
Q psy8682 1800 -WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT-HDGLTPHGLEPRA 1877 (1956)
Q Consensus 1800 -~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn-~dA~~~LG~l~~~ 1877 (1956)
+.+.+.+.+..+..+.+.+.....-...|....--........+...+..|.+++...-+-+|.+ ..+...++.+...
T Consensus 309 i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is 388 (652)
T KOG2376|consen 309 IYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKIS 388 (652)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHh
Confidence 11222222222222222221111111122221111222222233336777888888887777776 4556666666667
Q ss_pred hcccHHHHHHHHH
Q psy8682 1878 VKEMSDSIWYSLR 1890 (1956)
Q Consensus 1878 lg~~seAIws~Lr 1890 (1956)
+|+...|+ ..+.
T Consensus 389 ~gn~~~A~-~il~ 400 (652)
T KOG2376|consen 389 QGNPEVAL-EILS 400 (652)
T ss_pred cCCHHHHH-HHHH
Confidence 77776666 3343
No 128
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.79 E-value=8.9e-06 Score=85.18 Aligned_cols=226 Identities=27% Similarity=0.352 Sum_probs=194.4
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLS--IEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPd--naeAl~~LA~ay~~lGdyeEALe~yeKALe--LdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
.+.+..+...+..++...+. ........+..+...+.+..+...+...+. ..+.....+..++..+...+.+..++
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 57788888889888888776 478889999999999999999999999997 67888889999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCC-CCCCHHHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS-PLSSREIHQQVLSLYLNAARQCPS-QSIDPDVQNGLGV 1771 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~-ay~~lGdyeEAle~LekALel~P~-n~~~a~a~~~LG~ 1771 (1956)
..+.+++.. .+. . .......+. ++...|+++.|...+.+++...|. . ........++.
T Consensus 116 ~~~~~~~~~----~~~---~------------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~ 175 (291)
T COG0457 116 ELLEKALAL----DPD---P------------DLAEALLALGALYELGDYEEALELYEKALELDPELN-ELAEALLALGA 175 (291)
T ss_pred HHHHHHHcC----CCC---c------------chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcc-chHHHHHHhhh
Confidence 999999987 444 1 111222333 899999999999999999887762 1 12566677777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA 1850 (1956)
.+...+++++|+..+.+++...+. ....+..++..+...+++++|+..+.+++...|.....+..++..+...+.+++|
T Consensus 176 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (291)
T COG0457 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEA 255 (291)
T ss_pred HHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHH
Confidence 788899999999999999999999 7999999999999999999999999999999998777888888888888889999
Q ss_pred HHHHHHHHHhcCC
Q psy8682 1851 VEHFLTALNQQAA 1863 (1956)
Q Consensus 1851 ie~yekALeLdPd 1863 (1956)
...+.+++...|.
T Consensus 256 ~~~~~~~~~~~~~ 268 (291)
T COG0457 256 LEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHhCcc
Confidence 9999999999998
No 129
>KOG3785|consensus
Probab=98.78 E-value=1.8e-07 Score=109.83 Aligned_cols=242 Identities=17% Similarity=0.114 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.-.-+|.+++..|+|++|+..|.-+.+.+.-+.+.+.+||-+++-+|.|.+|.....++ |+.+-....+-.+-.+.
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl 134 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL 134 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence 44556777777777777777777777766666777777777777777777776655443 44443333333333344
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
++-++-... ...+ .+.......+|.+.+....|++|++.|.+.+.-+|+. ...-
T Consensus 135 ndEk~~~~f-h~~L----------------------qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey---~alN 188 (557)
T KOG3785|consen 135 NDEKRILTF-HSSL----------------------QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEY---IALN 188 (557)
T ss_pred CcHHHHHHH-HHHH----------------------hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhh---hhhH
Confidence 443332222 2211 2233445678888889999999999999999999987 6667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC--CChHHH----------------HHHHHH------
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG--NRPEEA----------------VEAYHT------ 1822 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql--GryeEA----------------ie~yeK------ 1822 (1956)
..+|.+|+++.-|+-+.+.+.--++..|+.+.+.+.++..++++ |+..++ ...++.
T Consensus 189 Vy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFr 268 (557)
T KOG3785|consen 189 VYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFR 268 (557)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEe
Confidence 78899999999999999999999999999998888877766654 333222 111111
Q ss_pred ----HHhhCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhccc
Q psy8682 1823 ----ALQLSPG----FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881 (1956)
Q Consensus 1823 ----ALeL~Pd----naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~ 1881 (1956)
|++.-|. -+++..+|+..|.++++.++|+...+ +++|..|.-+...|.+...+|+-
T Consensus 269 ngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~K---dl~PttP~EyilKgvv~aalGQe 332 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCK---DLDPTTPYEYILKGVVFAALGQE 332 (557)
T ss_pred CCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHh---hcCCCChHHHHHHHHHHHHhhhh
Confidence 2222232 36789999999999999999987765 68898888888888888777764
No 130
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.77 E-value=6e-07 Score=104.84 Aligned_cols=180 Identities=18% Similarity=0.168 Sum_probs=130.8
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHH
Q psy8682 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEV---WLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EAL 1676 (1956)
Q Consensus 1603 ~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeA---l~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl 1676 (1956)
.++..++..|..++..|+|++|+..|++++...|....+ .+.+|.++++.+++++|+..+++.++.+|+++ .++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~ 109 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL 109 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence 367789999999999999999999999999999988654 58999999999999999999999999998765 578
Q ss_pred HHHHHHHHHcC---------------C---HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc---hhhhhHHHHHHHHHH
Q psy8682 1677 MAISICFTNEA---------------C---LHDALDTLKDKIRPGQESNPRPSAYKADALPS---KLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1677 ~~LA~aY~~lG---------------d---ydEALe~leKALelg~e~dPd~eay~~Ll~~~---Kl~e~a~a~lnLA~a 1735 (1956)
+.+|.++...+ + ..+|+..+++.++. .|+........ .. -....+.-.+.+|..
T Consensus 110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----yP~S~ya~~A~-~rl~~l~~~la~~e~~ia~~ 184 (243)
T PRK10866 110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----YPNSQYTTDAT-KRLVFLKDRLAKYELSVAEY 184 (243)
T ss_pred HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----CcCChhHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 88888764443 1 34788999999999 78721111110 00 002233334456666
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fe 1787 (1956)
|.+.|.+..|+.-++.+++..|+.....+++..++.+|..+|..++|.....
T Consensus 185 Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 185 YTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 7777777777777777777766664455666666666666666666665543
No 131
>KOG2376|consensus
Probab=98.76 E-value=5.9e-07 Score=111.66 Aligned_cols=230 Identities=15% Similarity=0.155 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
..++.--..+...|+|++|+....+++...|++..+....-.++.+.++|++|+...+.-....-.+. ..+..|.|.++
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~-~~fEKAYc~Yr 91 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS-FFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch-hhHHHHHHHHH
Confidence 46666677778899999999999999999999999999999999999999999955544332221111 22789999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
+++.++|+..++-+-.. + .......|.+++++|+|++|++.|+..++.+.++ .+...
T Consensus 92 lnk~Dealk~~~~~~~~----~------------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd-~d~~~ 148 (652)
T KOG2376|consen 92 LNKLDEALKTLKGLDRL----D------------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD-QDEER 148 (652)
T ss_pred cccHHHHHHHHhccccc----c------------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch-HHHHH
Confidence 99999999999832222 1 1234456899999999999999999998877665 22222
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------CC-------
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLS--------PG------- 1829 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~--------Pd------- 1829 (1956)
..++-.+-.. -.+ . ..+.+...|. ..+.+++.|.++...|+|.+|++.+++|+.+. .+
T Consensus 149 r~nl~a~~a~----l~~-~-~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~e 222 (652)
T KOG2376|consen 149 RANLLAVAAA----LQV-Q-LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEE 222 (652)
T ss_pred HHHHHHHHHh----hhH-H-HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHH
Confidence 2222111100 011 1 3344444454 67889999999999999999999999995431 11
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
-..+...|+.++..+|+.++|...|...++.+|-+.
T Consensus 223 l~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D~ 258 (652)
T KOG2376|consen 223 LNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPADE 258 (652)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCCc
Confidence 123678899999999999999999999999988755
No 132
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=98.75 E-value=9.1e-06 Score=85.11 Aligned_cols=206 Identities=26% Similarity=0.369 Sum_probs=179.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAK--QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI- 1681 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALe--ldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~- 1681 (1956)
.......+..+...+++..+...+...+. ..+.....+...+..+...+++..|+..+.+++...+.........+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG 138 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence 45788899999999999999999999997 688888999999999999999999999999999988877555666666
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CC
Q psy8682 1682 CFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-QS 1760 (1956)
Q Consensus 1682 aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-n~ 1760 (1956)
++...|+++.|...+.+++.. .|. ...........+..+...+++++|+..+.+++...+. .
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~----~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~- 201 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL----DPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDD- 201 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc----CCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccc-
Confidence 899999999999999999776 441 0012333445556688899999999999999999988 6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
...+..++..+...+++++|+..+..++...|.....+..++..+...+.+++|...+.+++...|.
T Consensus 202 --~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 202 --AEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred --hHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 7889999999999999999999999999999998888888888888888899999999999999887
No 133
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=3.6e-07 Score=103.70 Aligned_cols=176 Identities=17% Similarity=0.228 Sum_probs=121.3
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHH
Q psy8682 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EAL 1676 (1956)
Q Consensus 1603 ~daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl 1676 (1956)
.+++.++..|..++..|+|.+|+..|++++...|.. ..+.+.+|.+++..|++.+|+..+++.++..|+++ .++
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~ 82 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYAL 82 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHH
Confidence 467899999999999999999999999999998875 67899999999999999999999999999998765 578
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc--chhhhhHHHHHHHHHHHHhcCCHH
Q psy8682 1677 MAISICFTNEA-----------CLHDALDTLKDKIRPGQESNPRPSAYKADALP--SKLTRLANHTLTFRSPLSSREIHQ 1743 (1956)
Q Consensus 1677 ~~LA~aY~~lG-----------dydEALe~leKALelg~e~dPd~eay~~Ll~~--~Kl~e~a~a~lnLA~ay~~lGdye 1743 (1956)
+.+|.++.... ...+|+..|+..+.. .|+..-....... .-....+.--+.+|..|.+.|.+.
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~----yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~ 158 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKR----YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYK 158 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-----TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHH----CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH
Confidence 88888876543 345899999999998 7771111110000 001223344455677777777777
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA 1782 (1956)
.|+..++.+++..|+......++..++.+|..+|..+.|
T Consensus 159 aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 159 AAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777776633344566666666666666633
No 134
>KOG3785|consensus
Probab=98.73 E-value=7.4e-07 Score=104.84 Aligned_cols=122 Identities=19% Similarity=0.195 Sum_probs=97.3
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------CC-------
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------------EP------- 1636 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------------dP------- 1636 (1956)
+++|++|+.. |..+.. .+++ +++.+.++|.+++-.|.|.+|...-.++-+. +.
T Consensus 70 LgdY~~Al~~--Y~~~~~--~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~f 143 (557)
T KOG3785|consen 70 LGDYEEALNV--YTFLMN--KDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTF 143 (557)
T ss_pred hccHHHHHHH--HHHHhc--cCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHH
Confidence 6699999988 655553 3333 5779999999999999999999998876321 00
Q ss_pred -----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1637 -----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1637 -----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
+..+-...||.+.+..-+|++|++.|.+.+.-+|+....-..+|.||+++.-|+-+.+.+.-.++. .|+
T Consensus 144 h~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q----~pd 217 (557)
T KOG3785|consen 144 HSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ----FPD 217 (557)
T ss_pred HHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh----CCC
Confidence 111223456777777888999999999999999998888889999999999999999999998888 777
No 135
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.72 E-value=2.1e-07 Score=101.13 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=97.9
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
++..+..+.+|..+...|++++|...|+-+..++|.+ ...|++||.++..+|+|.+|+.+|.+++.++|+++..+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~---~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ 108 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS---FDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA 108 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4566778889999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+|.|++..|+.+.|.+.|+.++...
T Consensus 109 ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 109 AAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999876
No 136
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.72 E-value=1.2e-07 Score=87.87 Aligned_cols=99 Identities=32% Similarity=0.539 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
+++.+|.++...|++++|+..++++++..|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 46677888888888888888888888888888788888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhcCC
Q psy8682 1845 GANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPd 1863 (1956)
|++++|..++.+++...|+
T Consensus 82 ~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 82 GKYEEALEAYEKALELDPN 100 (100)
T ss_pred HhHHHHHHHHHHHHccCCC
Confidence 8888888888888877763
No 137
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.71 E-value=2e-07 Score=94.07 Aligned_cols=105 Identities=16% Similarity=0.274 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYN 1836 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~ 1836 (1956)
+.+++.+|..+...|++++|+..|++++...|++ ..+++.+|.++...|++++|+.+|++++...|++ ..+++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 3467778888888888888888888888777765 4677778888888888888888888888877764 567888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
+|.++..+|++++|+.++++++...|++..+
T Consensus 82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 8888888888888888888888888876654
No 138
>KOG2396|consensus
Probab=98.71 E-value=1.4e-07 Score=115.39 Aligned_cols=145 Identities=20% Similarity=0.400 Sum_probs=121.3
Q ss_pred CCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhhcc
Q psy8682 783 QKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQ--------------------VDRARSIYERALDV 842 (1956)
Q Consensus 783 ~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd--------------------~ErARsIfERALs~ 842 (1956)
+.+-..++.+....+.|+ ||--|++...+..-+++|+++|..... ..+...+|.+|+..
T Consensus 22 ~giFt~dEi~~Ivk~Rr~-fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd~si~~rIv~lyr~at~r 100 (568)
T KOG2396|consen 22 KGIFTRDEIREIVKKRRD-FELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSDDSIPNRIVFLYRRATNR 100 (568)
T ss_pred cCCCCHHHHHHHHHHHHH-HHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHh
Confidence 345667777777755444 666677766778889999999964311 24456789999999
Q ss_pred cCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhc---cCchHHHHHH
Q psy8682 843 DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLE-NVAGKLFVFHRDS---ISQVTLWLGA 918 (1956)
Q Consensus 843 ~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~G-d~e~aR~VfERAL---~~~~~LWl~Y 918 (1956)
++..+.||..|+.|..+.+.+.++..||..++..+|+.+++|+.-+.+|-..+ +++.||.+|-|+| +.++.||..|
T Consensus 101 f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ey 180 (568)
T KOG2396|consen 101 FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEY 180 (568)
T ss_pred cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999898886655 5999999999999 8899999999
Q ss_pred HHhhcccccc
Q psy8682 919 LTLSLEGLGS 928 (1956)
Q Consensus 919 i~fEle~~~~ 928 (1956)
.++|+.+.++
T Consensus 181 frmEL~~~~K 190 (568)
T KOG2396|consen 181 FRMELMYAEK 190 (568)
T ss_pred HHHHHHHHHH
Confidence 9999886543
No 139
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.70 E-value=2.3e-06 Score=105.29 Aligned_cols=153 Identities=15% Similarity=0.092 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|....++|..+..++..|++++|+..++..++..|+|+..+...+.++...|+..+|.+.+++++.+ +|.
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l----~P~------ 372 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL----DPN------ 372 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCC------
Confidence 6667777777777777788888887777777777777777777777777777777777777777777 665
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
.....+++|.+|.+.|++++|+..+++.+..+|++ +..|..||..|..+|+..+|...
T Consensus 373 ---------~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~d---p~~w~~LAqay~~~g~~~~a~~A---------- 430 (484)
T COG4783 373 ---------SPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPED---PNGWDLLAQAYAELGNRAEALLA---------- 430 (484)
T ss_pred ---------ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC---chHHHHHHHHHHHhCchHHHHHH----------
Confidence 12335667777777777777777777777777777 77777777777777776666544
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
.+..|...|++++|+..+.++.+..
T Consensus 431 -------~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 431 -------RAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred -------HHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 3445556677777777777776654
No 140
>KOG2396|consensus
Probab=98.68 E-value=2.9e-07 Score=112.76 Aligned_cols=144 Identities=20% Similarity=0.275 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHhhccCCCC----CC-----CCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHH
Q psy8682 750 KAVDCFRSALQVRPDFTELLVYLFSSLDFQPP----KQ-----KISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYA 820 (1956)
Q Consensus 750 kArelFerALkkfP~d~~IWl~ylsfL~~~~~----~~-----ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYA 820 (1956)
+.|..|+--+++......-.+.|+.+...... +. +..-.+ -..-.|+..+|.+++.+++..+.+|..|+
T Consensus 35 k~Rr~fE~kL~rr~~~i~Dfi~YI~YE~nl~~lr~kR~Kk~~~k~S~sd--~si~~rIv~lyr~at~rf~~D~~lW~~yi 112 (568)
T KOG2396|consen 35 KKRRDFELKLQRRTLSIEDFINYIQYEINLEELRAKRRKKKRVKYSFSD--DSIPNRIVFLYRRATNRFNGDVKLWLSYI 112 (568)
T ss_pred HHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHHHHHHHhhcccccch--hHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 44555665566555555566666655431000 00 000000 11344678899999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 821 QWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQ-VNHARNLWDRAVTILPRANQFWYKYTYMEEMLE 895 (1956)
Q Consensus 821 qfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gn-ierARsLFERAL~~~Pks~~LW~kYidfE~k~G 895 (1956)
.|..+.+.+-+...||..+|..+|..++||+.-+..|...+. ++.||+||-|+|+.+|+++.+|..|.+||..+-
T Consensus 113 ~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmEL~~~ 188 (568)
T KOG2396|consen 113 AFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRMELMYA 188 (568)
T ss_pred HHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998876554 999999999999999999999999999998763
No 141
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.67 E-value=3.7e-07 Score=108.54 Aligned_cols=204 Identities=12% Similarity=0.105 Sum_probs=141.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1645 LGISLAENEQDPQAIAALSKCLSIEP--K----NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1645 LA~ay~~lGdyeEALe~yeKALeLdP--d----naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.|.+|...|++++|.++|.++....- + -...+...+.+|... ++++|+.+|++++.+ |.....
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~----------y~~~G~ 109 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEI----------YREAGR 109 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHH----------HHHCT-
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHH----------HHhcCc
Confidence 45666666777777777777655431 1 123455566666555 899999999999988 766552
Q ss_pred cchhhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~l-GdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
....+..+..+|.+|... |++++|+++|++|++..... ......+..+|.++..+|+|++|+..|+++....-
T Consensus 110 ---~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l 186 (282)
T PF14938_consen 110 ---FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCL 186 (282)
T ss_dssp ---HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred ---HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence 345677888999999998 99999999999999875433 12245678899999999999999999999987542
Q ss_pred CC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-----HHHHHHHHHHHH--cCCHHHHHHHHHHHHHh
Q psy8682 1795 DD-------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-----RARYNLGITCVH--LGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1795 dn-------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-----eA~~~LA~ay~k--lGdyEEAie~yekALeL 1860 (1956)
++ ...+...+.+++..|++..|...+++....+|... .....|-.++.. ...+.+|+..|+....+
T Consensus 187 ~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~l 266 (282)
T PF14938_consen 187 ENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRL 266 (282)
T ss_dssp CHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS--
T ss_pred cccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCcc
Confidence 21 13456778899999999999999999999888642 344445555443 34577777777766665
Q ss_pred cC
Q psy8682 1861 QA 1862 (1956)
Q Consensus 1861 dP 1862 (1956)
++
T Consensus 267 d~ 268 (282)
T PF14938_consen 267 DN 268 (282)
T ss_dssp -H
T ss_pred HH
Confidence 54
No 142
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.65 E-value=2.2e-06 Score=105.60 Aligned_cols=153 Identities=18% Similarity=0.128 Sum_probs=126.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
|....+++..+..++..|++++|+..++..+.. .|+ ........+.++...++.++|.+.+
T Consensus 303 ~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----~P~---------------N~~~~~~~~~i~~~~nk~~~A~e~~ 363 (484)
T COG4783 303 RGGLAAQYGRALQTYLAGQYDEALKLLQPLIAA----QPD---------------NPYYLELAGDILLEANKAKEAIERL 363 (484)
T ss_pred ccchHHHHHHHHHHHHhcccchHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 677778888898899999999999999888888 666 2233344678888999999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
++++.++|.. .....++|.+|.+.|++.+|+..++..+..+|+++..|..||.+|..+|+..+|...+
T Consensus 364 ~kal~l~P~~---~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~--------- 431 (484)
T COG4783 364 KKALALDPNS---PLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR--------- 431 (484)
T ss_pred HHHHhcCCCc---cHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH---------
Confidence 9999999887 8888888999999999999999999999889999999999999998888877665544
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
+..|...|++++|+..+..+.+..
T Consensus 432 --------AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 432 --------AEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred --------HHHHHhCCCHHHHHHHHHHHHHhc
Confidence 455666788888888888888765
No 143
>KOG4340|consensus
Probab=98.64 E-value=1.2e-06 Score=101.45 Aligned_cols=217 Identities=18% Similarity=0.106 Sum_probs=166.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALD 1694 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe 1694 (1956)
+.+..+|.+||+++..-.+.+|.+...+..+|.||+...+|..|..+|++.-.+.|......+..|..+++.+.+..|+.
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALr 99 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALR 99 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHH
Confidence 35677899999999999999998888999999999999999999999999999999888888888888999999999998
Q ss_pred HHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy8682 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1695 ~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~ 1774 (1956)
....+... |. + .......-+.+.+..+++..+..+.++ -|.. ..+....+.|.+.+
T Consensus 100 V~~~~~D~-----~~------L--------~~~~lqLqaAIkYse~Dl~g~rsLveQ----lp~e-n~Ad~~in~gClly 155 (459)
T KOG4340|consen 100 VAFLLLDN-----PA------L--------HSRVLQLQAAIKYSEGDLPGSRSLVEQ----LPSE-NEADGQINLGCLLY 155 (459)
T ss_pred HHHHhcCC-----HH------H--------HHHHHHHHHHHhcccccCcchHHHHHh----ccCC-Cccchhccchheee
Confidence 87766542 11 0 111122234556667777766665544 3421 23667888888888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh----CCC----------------c----
Q psy8682 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL----SPG----------------F---- 1830 (1956)
Q Consensus 1775 ~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL----~Pd----------------n---- 1830 (1956)
+.|+|++|++-|+.|++...-.+.+-++++.++++.|+++.|+++..+.++. .|. +
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~l 235 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVL 235 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHH
Confidence 9999999999999999988888888889999999999999999888777653 232 1
Q ss_pred -----HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1831 -----VRARYNLGITCVHLGANTQAVEHFL 1855 (1956)
Q Consensus 1831 -----aeA~~~LA~ay~klGdyEEAie~ye 1855 (1956)
.++.+..+.++++.|+++.|.+.+.
T Consensus 236 h~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 236 HQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred HHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 2356667788889999988876543
No 144
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.63 E-value=4e-06 Score=98.08 Aligned_cols=183 Identities=14% Similarity=0.015 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA---LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA---l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.+..++..|..+...|++++|+..|++++...|....+ .+.+|.+|...+++++|+..+++.++. .|+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~----~P~----- 101 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPT----- 101 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CcC-----
Confidence 45566667777777777777777777777777766543 366677777777777777777777776 666
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREI------------------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGd------------------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
.+....+++.+|.++...++ ..+|+..|++.++..|++.....+...+..+...
T Consensus 102 -------~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 102 -------HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred -------CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHH-
Confidence 44566666666666555541 1345566666666666651112222211111111
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
-+.--..+|..|.+.|+|..|+.-++.+++..|+. .++++.++.+|..+|..++|...
T Consensus 174 -------------------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~ 234 (243)
T PRK10866 174 -------------------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKV 234 (243)
T ss_pred -------------------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHH
Confidence 01122356788888999999999999999887764 56888899999999999988776
Q ss_pred HHH
Q psy8682 1854 FLT 1856 (1956)
Q Consensus 1854 yek 1856 (1956)
...
T Consensus 235 ~~~ 237 (243)
T PRK10866 235 AKI 237 (243)
T ss_pred HHH
Confidence 543
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.62 E-value=6.5e-07 Score=90.35 Aligned_cols=109 Identities=16% Similarity=0.225 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q psy8682 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRL 1803 (1956)
Q Consensus 1727 ~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nL 1803 (1956)
..++.+|..+...|++++|+..|.+++...|++.....+++.+|.++...|++++|+.+|++++...|++ +.++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4678899999999999999999999999998763446789999999999999999999999999998875 6789999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
|.++..+|++++|+..++++++..|++..+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999999999999999999999999876443
No 146
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.62 E-value=2e-06 Score=103.85 Aligned_cols=52 Identities=10% Similarity=0.060 Sum_probs=31.1
Q ss_pred HHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHh
Q psy8682 720 NAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFS 774 (1956)
Q Consensus 720 ~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~yls 774 (1956)
+-++-||. |--.|.+|+.-|...+.+++-|+.|+.+..-||--+..|..|++
T Consensus 33 erIkdNPt---nI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s 84 (660)
T COG5107 33 ERIKDNPT---NILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMS 84 (660)
T ss_pred HHhhcCch---hHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhc
Confidence 34555554 55556666666666666666666666666666655666666653
No 147
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.61 E-value=1.7e-06 Score=98.21 Aligned_cols=171 Identities=12% Similarity=0.103 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
+..++..|..++..|++.+|+..|++++...|... .+.+.+|.+++..|++++|+..+++.++. .|+
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~----yP~------ 74 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL----YPN------ 74 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-----TT------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CCC------
Confidence 34455555555555555555555555555555532 34455555555555555555555555555 444
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
.+....+++.+|.++.....-. + ......+...+|+..|+..+...|+
T Consensus 75 ------~~~~~~A~Y~~g~~~~~~~~~~---------~-----------------~~~~D~~~~~~A~~~~~~li~~yP~ 122 (203)
T PF13525_consen 75 ------SPKADYALYMLGLSYYKQIPGI---------L-----------------RSDRDQTSTRKAIEEFEELIKRYPN 122 (203)
T ss_dssp -------TTHHHHHHHHHHHHHHHHHHH---------H------------------TT---HHHHHHHHHHHHHHHH-TT
T ss_pred ------CcchhhHHHHHHHHHHHhCccc---------h-----------------hcccChHHHHHHHHHHHHHHHHCcC
Confidence 2334444555555444432211 0 0000011123444555555555444
Q ss_pred CH-----------------HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH---HHHHHHHHHHHHcCCHHHHH
Q psy8682 1796 DS-----------------RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV---RARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1796 na-----------------eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna---eA~~~LA~ay~klGdyEEAi 1851 (1956)
+. .--..+|..|.+.|.+..|+..++.+++..|+.. .++..++.+|.++|..+.|.
T Consensus 123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 32 1123467788888888888888888888888753 56778888888888877543
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.59 E-value=5.4e-07 Score=83.38 Aligned_cols=96 Identities=22% Similarity=0.398 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
+++.+|..+...|++++|+..++++++..|.+..++..+|.++...+++++|+..|++++...|.+..++..+|.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhc
Q psy8682 1687 ACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1687 GdydEALe~leKALel 1702 (1956)
|++++|...+.+++..
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999999887
No 149
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.57 E-value=4.6e-07 Score=99.21 Aligned_cols=122 Identities=20% Similarity=0.265 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHH
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie 1818 (1956)
+..+...+...++..+.. .....++.+|.++..+|++++|+..|++++.+.|+. +.++.++|.++...|++++|+.
T Consensus 15 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~ 93 (168)
T CHL00033 15 FTIVADILLRILPTTSGE-KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALE 93 (168)
T ss_pred cccchhhhhHhccCCchh-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHH
Confidence 444444444444433333 235667788888888888888888888888776552 3578888888888888888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHHhcCCC
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCV-------HLGANT-------QAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~-------klGdyE-------EAie~yekALeLdPdn 1864 (1956)
+|++++.+.|.....+.++|.++. .+|+++ +|+.+|++++..+|.+
T Consensus 94 ~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 94 YYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 888888888888777777777777 666766 5566666777777763
No 150
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=6.7e-07 Score=98.53 Aligned_cols=102 Identities=25% Similarity=0.330 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
..+++.+|..+...|++++|+.+|+++++..|+. ..++..+|.++...|++++|+.+|++++...|.+..++..+|.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3344444444444555555555555554443331 2344445555555555555555555555555544444444454
Q ss_pred HHHHcCC--------------HHHHHHHHHHHHHhcCCC
Q psy8682 1840 TCVHLGA--------------NTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1840 ay~klGd--------------yEEAie~yekALeLdPdn 1864 (1956)
++...|+ +++|++++++++.++|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 4444444 678888899999989885
No 151
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.55 E-value=5.1e-06 Score=93.26 Aligned_cols=197 Identities=17% Similarity=0.075 Sum_probs=147.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..|-..|-..-|...|.+++.+.|+-+.++..+|..+...|+++.|.+.|+..++++|.+.-+..+.|..+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee
Confidence 67789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHhCCCCCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY-LNAARQCPSQSID 1762 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L-ekALel~P~n~~~ 1762 (1956)
+.-|++.-|.+.+.+..+. +|+ +.|+.++ . .+-...-++.+|...+ +++.+.+.+.
T Consensus 144 YY~gR~~LAq~d~~~fYQ~----D~~-DPfR~LW------------L---Yl~E~k~dP~~A~tnL~qR~~~~d~e~--- 200 (297)
T COG4785 144 YYGGRYKLAQDDLLAFYQD----DPN-DPFRSLW------------L---YLNEQKLDPKQAKTNLKQRAEKSDKEQ--- 200 (297)
T ss_pred eecCchHhhHHHHHHHHhc----CCC-ChHHHHH------------H---HHHHhhCCHHHHHHHHHHHHHhccHhh---
Confidence 9999999999999999888 776 2344433 1 1112344666676544 4444433332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-------SRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-------aeA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
..|+..+ +.+|+.. -...++++.....++ .++++.||..+...|+.++|...|+-++..+-
T Consensus 201 -WG~~iV~---~yLgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 201 -WGWNIVE---FYLGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred -hhHHHHH---HHHhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 2222211 1223321 122333333333332 46788899999999999999999998887543
No 152
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.54 E-value=1.9e-06 Score=94.96 Aligned_cols=117 Identities=19% Similarity=0.270 Sum_probs=99.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
.+..++.+|..+...|++++|+.+|++++...|+. ..++..+|.++...|++++|+..|++++...|++..++..+|
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg 113 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA 113 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 67789999999999999999999999999887653 568999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
.++...|+...|...+.+++.. +++|++++++++..+|++
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~~~---------------------------------------~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAEAL---------------------------------------FDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHHHH---------------------------------------HHHHHHHHHHHHhhCchh
Confidence 9999998877766555544332 466777788888877775
No 153
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.53 E-value=3.3e-07 Score=85.46 Aligned_cols=67 Identities=33% Similarity=0.568 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcC
Q psy8682 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG-ANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG-dyEEAie~yekALeLdP 1862 (1956)
++.+|..+|.++...|++++|+.+|+++++++|+++.+++++|.++..+| ++++|+.+++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45667777777777777777777777777777777777777777777777 57777777777777766
No 154
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.51 E-value=4e-07 Score=105.84 Aligned_cols=144 Identities=16% Similarity=0.361 Sum_probs=118.8
Q ss_pred CCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHH----------------------HHHHHHHHhhc
Q psy8682 784 KISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD----------------------RARSIYERALD 841 (1956)
Q Consensus 784 ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~E----------------------rARsIfERALs 841 (1956)
.+-.++|.+.. -+.|..||.-|.+...+..-+++|+++|.....+. +.-.+|.|+..
T Consensus 23 giFs~dE~~~I-vktRr~fE~rL~rr~~klnDf~~YI~yE~nleklRaKR~Kr~~v~~K~s~sD~sipqk~~f~~~R~tn 101 (435)
T COG5191 23 GIFSPDELRRI-VKTRRKFELRLQRREKKLNDFMRYIKYECNLEKLRAKRVKRKKVGKKASFSDMSIPQKKIFELYRSTN 101 (435)
T ss_pred CCCCHHHHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHhhHHHHHHHHHHHHHhcccccchhccccceeeEeeehhhh
Confidence 45556666544 46788899988885566777999999996432221 22235567878
Q ss_pred ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhc---cCchHHHHH
Q psy8682 842 VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEE-MLENVAGKLFVFHRDS---ISQVTLWLG 917 (1956)
Q Consensus 842 ~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~-k~Gd~e~aR~VfERAL---~~~~~LWl~ 917 (1956)
.+|..+++|.+|+.+..+.|.+.....||-.+++.+|..+++|+.-.+||- .++|++.+|.+|.++| +.++.||..
T Consensus 102 kff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 102 KFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence 899999999999999999999999999999999999999999998888884 6899999999999999 888999999
Q ss_pred HHHhhcccccc
Q psy8682 918 ALTLSLEGLGS 928 (1956)
Q Consensus 918 Yi~fEle~~~~ 928 (1956)
|.+||+..+++
T Consensus 182 yfr~El~yiTK 192 (435)
T COG5191 182 YFRMELMYITK 192 (435)
T ss_pred HHHHHHHHHHH
Confidence 99999998744
No 155
>KOG4340|consensus
Probab=98.49 E-value=2e-06 Score=99.61 Aligned_cols=267 Identities=15% Similarity=0.045 Sum_probs=167.1
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
.+|+++|.. +..- ...+|. +...+..+|.+|+...+|..|..+|++.-...|......+..+..+++.+.+..|
T Consensus 24 ~ry~DaI~~--l~s~---~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADA 97 (459)
T KOG4340|consen 24 ARYADAIQL--LGSE---LERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADA 97 (459)
T ss_pred hhHHHHHHH--HHHH---HhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHH
Confidence 467888876 2222 334454 5558889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
+.........+.-....+..-+.+.+..+++..+....++.-. ...+....+.|.+.++
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---------------------en~Ad~~in~gCllyk 156 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---------------------ENEADGQINLGCLLYK 156 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---------------------CCccchhccchheeec
Confidence 9887665432100111222223333334444444333332211 1234455667777778
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC----------------C--
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PD----------------D-- 1796 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~----Pd----------------n-- 1796 (1956)
.|++++|.+-|+.+++...-+ +.+-++++.+++..|+|+.|+++..+.++.. |. +
T Consensus 157 egqyEaAvqkFqaAlqvsGyq---pllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 157 EGQYEAAVQKFQAALQVSGYQ---PLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred cccHHHHHHHHHHHHhhcCCC---chhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 888888888888887776655 6667777778888888888877776666532 21 1
Q ss_pred -------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1797 -------SRLWNRLGASLANGNRPEEAVEAYHTALQLSP--GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1797 -------aeA~~nLG~ay~qlGryeEAie~yeKALeL~P--dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
.++.+..+.++++.|+++.|.+.+...--... -++..+.+++..- ..+++.+..+-+.-.+.++|--++.
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ET 312 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPET 312 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHH
Confidence 13455566677777777777665543221111 1344455554432 2344555555566666666654455
Q ss_pred hhccccchh
Q psy8682 1868 LTPHGLEPR 1876 (1956)
Q Consensus 1868 ~~~LG~l~~ 1876 (1956)
..++-.++.
T Consensus 313 FANlLllyC 321 (459)
T KOG4340|consen 313 FANLLLLYC 321 (459)
T ss_pred HHHHHHHHh
Confidence 555544443
No 156
>KOG1941|consensus
Probab=98.49 E-value=3.1e-06 Score=100.20 Aligned_cols=243 Identities=15% Similarity=0.126 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC----CC--CHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIE----PK--NLEALM 1677 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLd----Pd--naeAl~ 1677 (1956)
.....|..++...++.+|+....+.+..-.+. ...+-.+..+..++|.|++++..--..+... .. ..+++.
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~l 87 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYL 87 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778889999999999999999988764433 2345556678888999988876654443332 11 235788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
+++..+...-++.+++.+.+..+.+ ++..|. ..-......++.++..++.++++++.|+.|++...
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~l-pgt~~~-------------~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~ 153 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGL-PGTRAG-------------QLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAH 153 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcC-CCCCcc-------------cccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999988887 222221 01123445689999999999999999999998865
Q ss_pred CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C------HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1758 SQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----D------SRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1758 ~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----n------aeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
++ .....++..||.+|....++++|.-+..+|.++-.. + ..+++.++.++..+|+...|.++.+++.
T Consensus 154 ~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 154 NNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred ccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 43 244578899999999999999999999999886432 1 2467889999999999999999999998
Q ss_pred hhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1825 QLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1825 eL~------PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++. +-.+....-+|.+|...|+.+.|..-|++|......
T Consensus 234 klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~ 278 (518)
T KOG1941|consen 234 KLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMAS 278 (518)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhh
Confidence 763 234567788999999999999999999999987665
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.48 E-value=2.4e-06 Score=93.63 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=90.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..++.+|.++...|++++|+..|++++.+.|+....+.++.++|.++...|++++|+.+|++++.+.|.....+.++
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~l 112 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNM 112 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 45677889999999999999999999999998776412356899999999999999999999999999999999999999
Q ss_pred HHHHH-------HCCChH-------HHHHHHHHHHhhCCCcH
Q psy8682 1804 GASLA-------NGNRPE-------EAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1804 G~ay~-------qlGrye-------EAie~yeKALeL~Pdna 1831 (1956)
|.++. .+|+++ +|+..|++++..+|.+.
T Consensus 113 a~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 113 AVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 98888 777877 55555556666777543
No 158
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.48 E-value=3.6e-06 Score=90.38 Aligned_cols=124 Identities=19% Similarity=0.102 Sum_probs=106.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHC
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANG 1810 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~ql 1810 (1956)
......++...+...++..++.+|+......+...+|.++...|++++|+..|++++...|+. ..+...||.++...
T Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~ 98 (145)
T PF09976_consen 19 LQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQ 98 (145)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHc
Confidence 333468999999999999999999874456778889999999999999999999999987664 45788999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
|++++|+..++. +...+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 99 ~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 99 GQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 999999999966 33344456788899999999999999999999885
No 159
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.47 E-value=2.8e-06 Score=108.96 Aligned_cols=133 Identities=14% Similarity=0.075 Sum_probs=112.2
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh--CCCC
Q psy8682 1730 LTFRSPLSSRE---IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD--------EYDKAVDCFRSALQV--RPDD 1796 (1956)
Q Consensus 1730 lnLA~ay~~lG---dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG--------dyeEAie~fekALel--~Pdn 1796 (1956)
+..|..+...+ ....|+.+|+++++++|++ +.++..++.+|.... +...|.....+++.+ ++.+
T Consensus 343 ~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~---a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~ 419 (517)
T PRK10153 343 FYQAHHYLNSGDAKSLNKASDLLEEILKSEPDF---TYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL 419 (517)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC
Confidence 33455554443 4789999999999999999 888888888775542 345666667776664 6778
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+.++..+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|.++.
T Consensus 420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 420 PRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 89999999999999999999999999999999 4789999999999999999999999999999999885
No 160
>KOG4648|consensus
Probab=98.47 E-value=8.3e-08 Score=112.20 Aligned_cols=234 Identities=11% Similarity=-0.001 Sum_probs=179.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG 1687 (1956)
+-..|..|+++|.|++||.||.+++..+|.++..+.+.|.+|++.+++..|...+..|+.++.....+|...+.+-..+|
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----CCCH
Q psy8682 1688 CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ----SIDP 1763 (1956)
Q Consensus 1688 dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n----~~~a 1763 (1956)
...+|.+.++.++++ .|+ ...+- ..+.......++.- +.+..|.. ....
T Consensus 180 ~~~EAKkD~E~vL~L----EP~---~~ELk----------------K~~a~i~Sl~E~~I----~~KsT~G~~~A~Q~~~ 232 (536)
T KOG4648|consen 180 NNMEAKKDCETVLAL----EPK---NIELK----------------KSLARINSLRERKI----ATKSTPGFTPARQGMI 232 (536)
T ss_pred hHHHHHHhHHHHHhh----Ccc---cHHHH----------------HHHHHhcchHhhhH----HhhcCCCCCccccchh
Confidence 999999999999999 887 11111 11111111111110 11111111 0000
Q ss_pred H--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1764 D--VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1764 ~--a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
. ..-..|..+...|.++.++.++..-+.....+..+-.+ +..|.+..++++|+...-+++..+|....+....+.+-
T Consensus 233 Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~~A~ 311 (536)
T KOG4648|consen 233 QILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPPKAE 311 (536)
T ss_pred hhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCchhH
Confidence 0 11223666778889999999988877666555555445 77888889999999999999988888777777777777
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.-+|...+|...++.++.+.|.+..+-.
T Consensus 312 T~~~~~~E~K~~~~T~~~~~P~~~~~~~ 339 (536)
T KOG4648|consen 312 TIAKTSKEVKPTKQTAVKVAPAVETPKE 339 (536)
T ss_pred HHHhhhhhcCcchhheeeeccccccchh
Confidence 7788899999999999999998665433
No 161
>KOG1941|consensus
Probab=98.45 E-value=8.3e-06 Score=96.73 Aligned_cols=280 Identities=11% Similarity=0.053 Sum_probs=203.6
Q ss_pred ChhhhhhhHHHHHhch--hhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-----HHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSS--VSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-----AEVWLSL 1645 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s--~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-----aeAl~~L 1645 (1956)
.++.-.+.|++++... ..+-+. +-.+....-+++.++++.+.+.-++.+++.+-+-.+.+-... ..+...+
T Consensus 51 ~a~s~~g~y~~mL~~a~sqi~~a~--~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~ 128 (518)
T KOG1941|consen 51 TAHSEMGRYKEMLKFAVSQIDTAR--ELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSM 128 (518)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhH
Confidence 5677788888888762 122222 223333456889999999999999999999888877653222 3567779
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIEPKNL------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLdPdna------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~ 1719 (1956)
|.++..++.++++++.|++|++...++. .++..||.+|..+.++++|+-+..++.++ -.. |. + ..
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~l----v~s---~~-l-~d 199 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAEL----VNS---YG-L-KD 199 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHH----HHh---cC-c-Cc
Confidence 9999999999999999999999864433 46788999999999999999999999988 111 11 0 00
Q ss_pred chhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Q psy8682 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD- 1795 (1956)
Q Consensus 1720 ~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd- 1795 (1956)
.......-+.+.++..+..+|+...|.++.+++.++.-.. ...+.....+|.+|...|+.+.|..-|+.|......
T Consensus 200 ~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~ 279 (518)
T KOG1941|consen 200 WSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASL 279 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhh
Confidence 0123345567889999999999999999999998764222 223556778899999999999999999999865322
Q ss_pred -----CHHHHHHHHHHHHHCCCh-----HHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1796 -----DSRLWNRLGASLANGNRP-----EEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1796 -----naeA~~nLG~ay~qlGry-----eEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
...++...|.++....-. -.|++.-.+++++... .-..+..++.+|..+|.-++-..++.+|-+
T Consensus 280 gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~~ 359 (518)
T KOG1941|consen 280 GDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAHE 359 (518)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 234555555555443333 3488888888776433 234678899999999988888888877766
Q ss_pred hcCC
Q psy8682 1860 QQAA 1863 (1956)
Q Consensus 1860 LdPd 1863 (1956)
....
T Consensus 360 ~~~e 363 (518)
T KOG1941|consen 360 CVEE 363 (518)
T ss_pred HHHH
Confidence 6544
No 162
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=3.4e-06 Score=99.49 Aligned_cols=123 Identities=19% Similarity=0.210 Sum_probs=112.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN---RPEEAV 1817 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG---ryeEAi 1817 (1956)
..+..+.-++.-+..+|++ ..-|..||.+|..+|++..|...|.+|+++.|++++.+..+|.++..+. ...+|.
T Consensus 137 ~~~~l~a~Le~~L~~nP~d---~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~ 213 (287)
T COG4235 137 EMEALIARLETHLQQNPGD---AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKAR 213 (287)
T ss_pred cHHHHHHHHHHHHHhCCCC---chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 3566677788889999999 9999999999999999999999999999999999999999999887654 357899
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
..+++++.++|.+..+.+.||..++..|+|.+|+..++..++..|.+..
T Consensus 214 ~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 214 ALLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 9999999999999999999999999999999999999999999987554
No 163
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.44 E-value=2.9e-06 Score=100.95 Aligned_cols=185 Identities=14% Similarity=0.109 Sum_probs=139.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA 1733 (1956)
++++|...|.+| |.+|...|++++|.++|.++... +..... ....+..+...+
T Consensus 30 ~~e~Aa~~y~~A--------------a~~fk~~~~~~~A~~ay~kAa~~----------~~~~~~---~~~Aa~~~~~Aa 82 (282)
T PF14938_consen 30 DYEEAADLYEKA--------------ANCFKLAKDWEKAAEAYEKAADC----------YEKLGD---KFEAAKAYEEAA 82 (282)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTT-CHHHHHHHHHHHHH----------HHHTT----HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH--------------HHHHHHHhccchhHHHHHHHHHH----------HHHcCC---HHHHHHHHHHHH
Confidence 566666666554 67788999999999999999888 544331 134556667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCC--C----HHHHHHH
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLS-DEYDKAVDCFRSALQVRPD--D----SRLWNRL 1803 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~l-GdyeEAie~fekALel~Pd--n----aeA~~nL 1803 (1956)
.++... ++++|+.+|++++.+.-.. ...+.++..+|.+|... |++++|+++|++|+.+... . ...+..+
T Consensus 83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~ 161 (282)
T PF14938_consen 83 NCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKA 161 (282)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHH
Confidence 777666 9999999999999874332 12356788999999998 9999999999999987422 2 3567889
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC------c-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG------F-VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd------n-aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
|.++..+|+|++|+..|+++....-+ . ...++..+.|++..|++..|...+++....+|....
T Consensus 162 A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~ 231 (282)
T PF14938_consen 162 ADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS 231 (282)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence 99999999999999999999875322 1 234567888999999999999999999999998554
No 164
>KOG0543|consensus
Probab=98.39 E-value=3.3e-06 Score=102.45 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=96.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQ------------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD 1796 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n------------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn 1796 (1956)
....|+.|++.|+|..|...|++++..-... .....++.+++.++.++++|.+|+..++++|.++|++
T Consensus 211 ~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N 290 (397)
T KOG0543|consen 211 KKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNN 290 (397)
T ss_pred HHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc
Confidence 3456889999999999999999988764422 1123456777777777777777777777777777777
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcCC
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA-VEHFLTALNQQAA 1863 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA-ie~yekALeLdPd 1863 (1956)
..+++..|.++..+|+|+.|+..|++++++.|+|..+...|..+-.+..++.+. .+.|..++..-+.
T Consensus 291 ~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 291 VKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 777777777777777777777777777777777777777777776666555443 5666666655443
No 165
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.39 E-value=9.3e-07 Score=82.40 Aligned_cols=67 Identities=34% Similarity=0.574 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCC
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEP 1670 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdP 1670 (1956)
++..|+.+|..++..|++++|+.+|+++++.+|+++.+++++|.++..+| ++++|+..++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45677788888888888888888888888888888888888888888887 68888888888887776
No 166
>KOG0543|consensus
Probab=98.37 E-value=2.2e-06 Score=103.97 Aligned_cols=134 Identities=17% Similarity=0.192 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----D-----------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pd----n-----------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
..-..|..|++.|+|..|...|++|+..-.. + ..++.+++.|+.++++|.+|+....++|.++|+
T Consensus 210 ~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~ 289 (397)
T KOG0543|consen 210 RKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPN 289 (397)
T ss_pred HHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence 3455688999999999999999999875331 1 246899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
|..++|..|.++..+|+|+.|+..|++|++++|+|..+...+..+..+...+.+.-...++..+.....
T Consensus 290 N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~ 358 (397)
T KOG0543|consen 290 NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAE 358 (397)
T ss_pred chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999999999999999999999999888887776666655544555655555543
No 167
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.35 E-value=1.5e-05 Score=96.86 Aligned_cols=186 Identities=13% Similarity=0.131 Sum_probs=141.6
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 754 CFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRAR 833 (1956)
Q Consensus 754 lFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErAR 833 (1956)
-|++.++.+|.|.+.|+.|+.+-.......... ..+.....++...+|++||..++.+..+|+.|.+.-.+..+.++..
T Consensus 7 el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~-~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 7 ELNRRVRENPHDIEAWLELIEFQDELFRLQSSS-KAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhccccccc-hhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 478889999999999999998866322111111 3455667788999999999999999999999999988888999999
Q ss_pred HHHHHhhcccCCCHHHHHHHHHHHHH---cCChHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHH
Q psy8682 834 SIYERALDVDHRNITLWLKYTELEMR---NRQVNHARNLWDRAVTILPR------------------ANQFWYKYTYMEE 892 (1956)
Q Consensus 834 sIfERALs~~Pk~~dLWl~YadfE~k---~gnierARsLFERAL~~~Pk------------------s~~LW~kYidfE~ 892 (1956)
..+++++..+|.+..||..|+++... .-++..+|.+|.++++.... ...++..+..|+.
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876 34688999999999873210 1667778889999
Q ss_pred HcCCHHHHHHHHHhhc------c----Cc--hHHHHHHHHhh-c---ccccchHHHHHHHHHHH
Q psy8682 893 MLENVAGKLFVFHRDS------I----SQ--VTLWLGALTLS-L---EGLGSNLQSWVRFLARD 940 (1956)
Q Consensus 893 k~Gd~e~aR~VfERAL------~----~~--~~LWl~Yi~fE-l---e~~~~~lk~~~r~l~ra 940 (1956)
+.|-.++|-.++.-.+ | .. .+....+-+|- . +.+....+.|..+++..
T Consensus 166 ~aG~~E~Ava~~Qa~lE~n~~~P~~~~~~~~~~~~~~fe~FWeS~vpRiGE~gA~GW~~~~~~~ 229 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEFNFFRPESLSSSSFSERLESFEEFWESEVPRIGEPGAKGWRKWMEQG 229 (321)
T ss_pred HCCchHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHhCcCCCCCCCCCcchhhhhhccc
Confidence 9999999988887765 1 11 13344444441 1 12555566777666663
No 168
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.34 E-value=1e-05 Score=86.85 Aligned_cols=123 Identities=15% Similarity=0.133 Sum_probs=101.6
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
..++...+...+++.+.. .|+ .+-...+.+.+|.++...|++++|...|+.++...|+......
T Consensus 23 ~~~~~~~~~~~~~~l~~~----~~~------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~ 86 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD----YPS------------SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPL 86 (145)
T ss_pred HCCCHHHHHHHHHHHHHH----CCC------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHH
Confidence 578888888888888887 666 2233456788999999999999999999999998766534456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
+...+|.++...|++++|+..++. +.-.+-.+.++..+|.+|...|++++|+..|++|+
T Consensus 87 a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 87 ARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 788899999999999999999976 33344456788899999999999999999999875
No 169
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.34 E-value=1.2e-06 Score=85.35 Aligned_cols=81 Identities=23% Similarity=0.393 Sum_probs=61.2
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1776 SDEYDKAVDCFRSALQVRPD--DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~Pd--naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
+|+|+.|+..++++++..|. +...++.+|.+|++.|++++|+..+++ ++.++.+....+.+|.++.++|++++|+.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 57788888888888887774 455666778888888888888888887 777777777777778888888888888888
Q ss_pred HHHH
Q psy8682 1854 FLTA 1857 (1956)
Q Consensus 1854 yekA 1857 (1956)
|+++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7764
No 170
>KOG3081|consensus
Probab=98.32 E-value=6.8e-05 Score=86.99 Aligned_cols=253 Identities=13% Similarity=0.073 Sum_probs=169.6
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
+.+++.|..+|.. +..+...+ .+.+..+.+.+.|...|++...+.-....- .....+...++.....-++
T Consensus 18 ~fY~Gnyq~~ine-----~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~ 87 (299)
T KOG3081|consen 18 YFYLGNYQQCINE-----AEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESN 87 (299)
T ss_pred HHHhhHHHHHHHH-----HHhhcccc--chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcch
Confidence 4567777777765 23222221 356677788888888888766555443322 1223345555555555555
Q ss_pred hHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIE--PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALeLd--PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
.+.-+.-+.+.+... ..+...+..-|.+|...|++++|++.......+ ++...-
T Consensus 88 ~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l------------------------E~~Al~ 143 (299)
T KOG3081|consen 88 KKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL------------------------EAAALN 143 (299)
T ss_pred hHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH------------------------HHHHHH
Confidence 554444444433332 223334555567788888899988887763333 112222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS----DEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l----GdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
-.++.+..+.+-|...++++.+++.+. ++..||..+... +++.+|.-+|++.-...|..+.+.+.++.+.+
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~-----tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDA-----TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHH-----HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 467778888888888888888876654 556666665433 56888888888888877888888888889999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCCChh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV-EHFLTALNQQAATHD 1866 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi-e~yekALeLdPdn~d 1866 (1956)
.+|+|++|...++.++..++++++++.++..+-...|...++. +++.+....+|.++-
T Consensus 219 ~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~ 277 (299)
T KOG3081|consen 219 QLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPF 277 (299)
T ss_pred HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchH
Confidence 9999999999999999888888999988888888888876665 445556666777654
No 171
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.32 E-value=1.8e-06 Score=79.76 Aligned_cols=64 Identities=25% Similarity=0.310 Sum_probs=44.8
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
.+|..+...|++++|+..|+++++..|++..+++.+|.++..+|++++|+.+|+++++++|+++
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4566777777777777777777777777777777777777777777777777777777777654
No 172
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.27 E-value=2.5e-06 Score=78.80 Aligned_cols=65 Identities=37% Similarity=0.587 Sum_probs=58.4
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
+.+|..++..|++++|+..|+++++.+|+++.+++.+|.++..+|++++|+..|+++++.+|+++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999874
No 173
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.24 E-value=2.2e-06 Score=83.46 Aligned_cols=81 Identities=23% Similarity=0.391 Sum_probs=68.5
Q ss_pred cCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPd--naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~ 1695 (1956)
+|+++.|+.+|+++++..|. +...++.+|.+|+..|++++|+..+++ ++.++.+....+.+|.++..+|++++|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 68899999999999999885 456777789999999999999999988 778888888888889999999999999999
Q ss_pred HHHH
Q psy8682 1696 LKDK 1699 (1956)
Q Consensus 1696 leKA 1699 (1956)
++++
T Consensus 81 l~~~ 84 (84)
T PF12895_consen 81 LEKA 84 (84)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 8875
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.23 E-value=2.5e-05 Score=100.39 Aligned_cols=147 Identities=18% Similarity=0.139 Sum_probs=76.3
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
++-.++..|..++..++ ...|+.+|+++++++|+++.++..++.++.....+. |..
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~-------------~~~-------- 396 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQ-------------PLD-------- 396 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcC-------------Ccc--------
Confidence 44556667777766554 667777888888888887777777766664331111 000
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS 1760 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~ 1760 (1956)
..+...+.....+++.+ ... +..+.++..+|..+...|++++|...+++|+.++| +
T Consensus 397 -----~~~l~~a~~~~~~a~al----~~~-------------~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s- 452 (517)
T PRK10153 397 -----EKQLAALSTELDNIVAL----PEL-------------NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-S- 452 (517)
T ss_pred -----HHHHHHHHHHHHHhhhc----ccC-------------cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-
Confidence 01112233333333332 001 01122333344444455555555555555555555 2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
..+|..+|.++...|++++|++.|++|+.++|.++
T Consensus 453 --~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 453 --WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 44555556555556666666666666665555544
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=7.8e-06 Score=96.53 Aligned_cols=133 Identities=17% Similarity=0.194 Sum_probs=117.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG---ANTQAVEH 1853 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG---dyEEAie~ 1853 (1956)
.+.++.+.-++..+..+|++.+-|..||.+|+.+|+++.|...|.+|+++.|++++.+..+|.++.... ...+|...
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 345667777888899999999999999999999999999999999999999999999999999987664 35789999
Q ss_pred HHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCcccccccCcch
Q psy8682 1854 FLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEW 1910 (1956)
Q Consensus 1854 yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~ 1910 (1956)
+++++.++|++..+.+.+|..+.+.|++.+++ .++++.+...+-..++..+.+...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp~~~~rr~~ie~~i 271 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLPADDPRRSLIERSI 271 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCCCCCchHHHHHHHH
Confidence 99999999999999999999999999999988 778888888887767666655433
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.20 E-value=1.9e-05 Score=97.96 Aligned_cols=121 Identities=24% Similarity=0.256 Sum_probs=110.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
+...+...++++.|+..+++..+.+|+ +...++.++...++-.+|++.+.+++...|.+..++...+..+...+
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~~pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRERDPE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhcCCc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 345556678999999999999988876 36678999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
+++.|+...++++...|++...|+.|+.+|..+|+++.|+..++.+-
T Consensus 249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999997776443
No 177
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.20 E-value=1.8e-05 Score=93.65 Aligned_cols=102 Identities=15% Similarity=0.242 Sum_probs=58.5
Q ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHH
Q psy8682 1764 DVQNGLGVLF-NLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYN 1836 (1956)
Q Consensus 1764 ~a~~~LG~ly-~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~ 1836 (1956)
...+..|..+ ...|+|++|+..|++.++..|++ +.+++.+|.+|...|++++|+..|++++...|+ .+++++.
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k 222 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK 222 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence 3444444433 34455666666666666655554 345566666666666666666666666655544 3455666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+|.++..+|++++|+..|+++++..|++.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 66666666666666666666666666544
No 178
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.20 E-value=2.8e-05 Score=92.02 Aligned_cols=108 Identities=19% Similarity=0.282 Sum_probs=96.4
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHH
Q psy8682 1726 ANHTLTFRSPL-SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD---DSRLWN 1801 (1956)
Q Consensus 1726 a~a~lnLA~ay-~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd---naeA~~ 1801 (1956)
....+..|..+ ...|++++|+..|+..++.+|++...+.+++.+|.+|+..|++++|+..|+++++..|+ .+++++
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 34556666665 66799999999999999999998556789999999999999999999999999998887 468999
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~PdnaeA 1833 (1956)
.+|.++..+|++++|+..|+++++..|+...+
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 99999999999999999999999999997654
No 179
>PRK11906 transcriptional regulator; Provisional
Probab=98.18 E-value=2e-05 Score=97.74 Aligned_cols=124 Identities=9% Similarity=0.019 Sum_probs=112.9
Q ss_pred CHHHHHHHHHHHH---HhCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1741 IHQQVLSLYLNAA---RQCPSQSIDPDVQNGLGVLFNLS---------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1741 dyeEAle~LekAL---el~P~n~~~a~a~~~LG~ly~~l---------GdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
..+.|+.+|.+++ .++|.. +.++..++.++... ....+|.+..++|++++|.++.++..+|.++.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~---a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~ 349 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLK---TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITG 349 (458)
T ss_pred HHHHHHHHHHHHhhcccCCccc---HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4567889999999 889988 89999999887654 23568889999999999999999999999999
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
..++++.|...|++|+.++|+.+.+++..|.++...|+.++|.+.++++++++|.-..+
T Consensus 350 ~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 350 LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 99999999999999999999999999999999999999999999999999999985543
No 180
>PRK11906 transcriptional regulator; Provisional
Probab=98.16 E-value=6.5e-05 Score=93.41 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHcC---ChHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------CChHHHHHHHHHHHHhCCC
Q psy8682 1607 NAFALGQEKLRQG---DLPSAILYLEAAA---KQEPDNAEVWLSLGISLAEN---------EQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1607 all~LG~aylk~G---dydEAIe~fekAL---eldPdnaeAl~~LA~ay~~l---------GdyeEALe~yeKALeLdPd 1671 (1956)
.++.+|...+..+ ..+.|+.+|.+++ .++|+.+.++..++.++... ....+|....++|++++|.
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~ 336 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV 336 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence 5577888877766 5678999999999 99999999999999988754 2345788888889999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++.++..+|.++...++++.|...|++++.+ +|+ .+.+++..|.+....|+.++|.+.+++
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L----~Pn---------------~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIH----STD---------------IASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc----CCc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999888888888888888888888 666 455667777888888888888888888
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fek 1788 (1956)
+++++|.. ..+ ....+-.-.+-....+.|+..|-+
T Consensus 398 alrLsP~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 398 SLQLEPRR-RKA-VVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HhccCchh-hHH-HHHHHHHHHHcCCchhhhHHHHhh
Confidence 88888865 111 112222212234455666666544
No 181
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=98.16 E-value=6.9e-06 Score=95.86 Aligned_cols=101 Identities=19% Similarity=0.351 Sum_probs=89.7
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCC
Q psy8682 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPR 879 (1956)
Q Consensus 801 lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pk 879 (1956)
+|-|+...++..+++|..|+.+..+.|.+.+...||-.+|+.+|..++||+.-+++|.. .+|++.+|++|.++++.+|.
T Consensus 95 ~~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~ 174 (435)
T COG5191 95 ELYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR 174 (435)
T ss_pred eeehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence 35566677788899999999999999999999999999999999999999998999864 79999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q psy8682 880 ANQFWYKYTYMEEMLENVAGKLFVFHR 906 (1956)
Q Consensus 880 s~~LW~kYidfE~k~Gd~e~aR~VfER 906 (1956)
++.+|..|..||..+ .-+++.|
T Consensus 175 ~p~iw~eyfr~El~y-----iTKL~~R 196 (435)
T COG5191 175 SPRIWIEYFRMELMY-----ITKLINR 196 (435)
T ss_pred CchHHHHHHHHHHHH-----HHHHHhh
Confidence 999999999999765 3345555
No 182
>KOG3081|consensus
Probab=98.16 E-value=0.00018 Score=83.69 Aligned_cols=257 Identities=11% Similarity=0.049 Sum_probs=183.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
.+-++-.|+|..++..-++.-... .......++.+.|..+|++..-+.-....- .....+...++.....-++.+.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~eI~~~~---~~~lqAvr~~a~~~~~e~~~~~ 90 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISEIKEGK---ATPLQAVRLLAEYLELESNKKS 90 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHccccccccccccccc---CChHHHHHHHHHHhhCcchhHH
Confidence 345556788888888777765443 677788889999999998866554433221 1222344455554444455444
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
-+.-+.+.+.. . . ..........-|.+|...|++++|++...... + .++...-..
T Consensus 91 ~~~~l~E~~a~----~-~------------~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~-----~---lE~~Al~Vq 145 (299)
T KOG3081|consen 91 ILASLYELVAD----S-T------------DGSNLIDLLLAAIIYMHDGDFDEALKALHLGE-----N---LEAAALNVQ 145 (299)
T ss_pred HHHHHHHHHHh----h-c------------cchhHHHHHHhhHHhhcCCChHHHHHHHhccc-----h---HHHHHHHHH
Confidence 44444443332 0 0 01122334455789999999999999887732 2 445555567
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy 1847 (1956)
++.++.+.+-|.+.++++..++.+ .++..||.++.+ .+++.+|.-+|+..-+..|..+.....++.|+..+|++
T Consensus 146 I~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~ 223 (299)
T KOG3081|consen 146 ILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY 223 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH
Confidence 888999999999999999887655 344445555443 35689999999999988888899999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1848 EEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
++|...++.||..++++++++.++-.+...+|...+..-+++.......+.+
T Consensus 224 eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 224 EEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999988999999777766666655555544
No 183
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=98.15 E-value=2.5e-05 Score=95.02 Aligned_cols=151 Identities=17% Similarity=0.268 Sum_probs=117.3
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHH
Q psy8682 800 KAFEDNIRKNRMVISNWIKYAQWEESQKQ------------VDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHAR 867 (1956)
Q Consensus 800 ~lyEraL~~~~~s~~lWlkYAqfE~~~Gd------------~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gnierAR 867 (1956)
.-|++.++..|..++.|+.|+++....-. .|+...||||||+.+|.+..||..|++.-.+..+.+...
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~ 85 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA 85 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 35888898889999999999999765422 467778999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhhc-------cCc--------------hHHHHHHHHhhc
Q psy8682 868 NLWDRAVTILPRANQFWYKYTYMEEML---ENVAGKLFVFHRDS-------ISQ--------------VTLWLGALTLSL 923 (1956)
Q Consensus 868 sLFERAL~~~Pks~~LW~kYidfE~k~---Gd~e~aR~VfERAL-------~~~--------------~~LWl~Yi~fEl 923 (1956)
..|++++..+|....+|.+|++|.... -.+..++.+|.++| ... ..+.+.+..|..
T Consensus 86 ~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~ 165 (321)
T PF08424_consen 86 KKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLR 165 (321)
T ss_pred HHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999873 36899999999998 111 124666666655
Q ss_pred ccc--cchHHHHHHHHHHHhccccCccceeee
Q psy8682 924 EGL--GSNLQSWVRFLARDVGECCCGQVVSTV 953 (1956)
Q Consensus 924 e~~--~~~lk~~~r~l~ralkec~~g~~~~~~ 953 (1956)
.-+ ...+-.|.-.|+. +|++...+...
T Consensus 166 ~aG~~E~Ava~~Qa~lE~---n~~~P~~~~~~ 194 (321)
T PF08424_consen 166 QAGYTERAVALWQALLEF---NFFRPESLSSS 194 (321)
T ss_pred HCCchHHHHHHHHHHHHH---HcCCccccccc
Confidence 532 2333455666666 45444444433
No 184
>PRK15331 chaperone protein SicA; Provisional
Probab=98.13 E-value=8.9e-06 Score=89.20 Aligned_cols=97 Identities=16% Similarity=0.055 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
.+..+..|.-++..|++++|...|+-....+|.+++.+..||.++..+++|++|+..|..+..++++++...+..|.|+.
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l 116 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQL 116 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHH
Confidence 45566667777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHH
Q psy8682 1843 HLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1843 klGdyEEAie~yekALe 1859 (1956)
.+|+.+.|+.+|+.++.
T Consensus 117 ~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 117 LMRKAAKARQCFELVNE 133 (165)
T ss_pred HhCCHHHHHHHHHHHHh
Confidence 77777777777777777
No 185
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.12 E-value=3e-05 Score=94.10 Aligned_cols=155 Identities=19% Similarity=0.313 Sum_probs=123.6
Q ss_pred HHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 756 RSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSI 835 (1956)
Q Consensus 756 erALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsI 835 (1956)
..-++-+|++...|-.+++++.++ +-.+..|..||++..-+|.....|..|+.-|...++++.+..+
T Consensus 32 RerIkdNPtnI~S~fqLiq~~~tq-------------~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~l 98 (660)
T COG5107 32 RERIKDNPTNILSYFQLIQYLETQ-------------ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESL 98 (660)
T ss_pred HHHhhcCchhHHHHHHHHHHHhhh-------------hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHH
Confidence 344678999999999999888732 2244667899999988888889999999999999999999999
Q ss_pred HHHhhcccCCCHHHHHHHHHHHHHcCChH--HHHH----HHHHHHH---hCCCCHHHHHHHHHHHHH---------cCCH
Q psy8682 836 YERALDVDHRNITLWLKYTELEMRNRQVN--HARN----LWDRAVT---ILPRANQFWYKYTYMEEM---------LENV 897 (1956)
Q Consensus 836 fERALs~~Pk~~dLWl~YadfE~k~gnie--rARs----LFERAL~---~~Pks~~LW~kYidfE~k---------~Gd~ 897 (1956)
|-|+|... ...+||+.|+++-.+.++.- .+|. .||-.+. ..|.+..+|..|.+|.+. +..+
T Consensus 99 f~rCL~k~-l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqri 177 (660)
T COG5107 99 FGRCLKKS-LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRI 177 (660)
T ss_pred HHHHHhhh-ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHH
Confidence 99999743 34899999999988765321 2333 4666555 468889999999997543 3357
Q ss_pred HHHHHHHHhhc----cCchHHHHHHHHhhcc
Q psy8682 898 AGKLFVFHRDS----ISQVTLWLGALTLSLE 924 (1956)
Q Consensus 898 e~aR~VfERAL----~~~~~LWl~Yi~fEle 924 (1956)
+.+|..|.||| .+-..+|.+|-.||.+
T Consensus 178 d~iR~~Y~ral~tP~~nleklW~dy~~fE~e 208 (660)
T COG5107 178 DKIRNGYMRALQTPMGNLEKLWKDYENFELE 208 (660)
T ss_pred HHHHHHHHHHHcCccccHHHHHHHHHHHHHH
Confidence 89999999999 4556899999888887
No 186
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.08 E-value=3.8e-05 Score=80.85 Aligned_cols=98 Identities=24% Similarity=0.211 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD---DSRLWNRLG 1804 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd---naeA~~nLG 1804 (1956)
+.+.+|.++...|+.++|+.+|++++...........++..+|..+..+|++++|+..+++++...|+ +..+...++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A 82 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA 82 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence 45677788888888888888888887765443223557777888888888888888888888877777 666777777
Q ss_pred HHHHHCCChHHHHHHHHHHHh
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALe 1825 (1956)
.++...|++++|+..+-.++.
T Consensus 83 l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 83 LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 788888888888877766664
No 187
>PRK15331 chaperone protein SicA; Provisional
Probab=98.07 E-value=2.8e-05 Score=85.35 Aligned_cols=99 Identities=12% Similarity=0.038 Sum_probs=96.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
..+..+..|..++..|++++|..+|+-+...+|.+.+.+..||.++..+++|++|+..|..+..++++++...+..|.||
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 66799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q psy8682 1684 TNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALel 1702 (1956)
..+|+.+.|..+|..++..
T Consensus 116 l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 116 LLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHhCCHHHHHHHHHHHHhC
Confidence 9999999999999999886
No 188
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=98.03 E-value=0.0004 Score=81.00 Aligned_cols=179 Identities=18% Similarity=0.257 Sum_probs=128.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE---ALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnae---Al~ 1677 (1956)
.+..++..|...++.|++++|+..|+.+...+|.. ..+...++.++++.+++++|+...++-+.+.|.+++ +++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 56799999999999999999999999999998865 568999999999999999999999999999987664 566
Q ss_pred HHHHHHHHc--------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc--h-hhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1678 AISICFTNE--------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--K-LTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1678 ~LA~aY~~l--------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~--K-l~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
..|.++... .-..+|...++..+.. -|+.. |..-.... . ...++.--..+|..|.+.|.+-.|+
T Consensus 113 lkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~r----yPnS~-Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 113 LKGLSYFFQIDDVTRDQSAARAAFAAFKELVQR----YPNSR-YAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred HHHHHHhccCCccccCHHHHHHHHHHHHHHHHH----CCCCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 777776543 2244778888888888 77711 11111000 0 0123333445677777777777777
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fe 1787 (1956)
..++.+++..|+......++..+..+|..+|-.++|...-.
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~ 228 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK 228 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence 77777777766654445566666677777777776665543
No 189
>KOG4648|consensus
Probab=98.03 E-value=1.2e-05 Score=94.75 Aligned_cols=208 Identities=9% Similarity=0.015 Sum_probs=154.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcch
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~K 1721 (1956)
+-..|.-|+.+|+|++|+++|.+++..+|.++..+.+.|.+|+++..|..|...+..++.+ +.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d~------------- 162 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----DK------------- 162 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----hH-------------
Confidence 4567899999999999999999999999999999999999999999999999999999998 32
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-
Q psy8682 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW- 1800 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~- 1800 (1956)
....+|...+.+-..+|...+|.+-++.++++.|++ ....-.++.+ ....++. -+.+..|....+.
T Consensus 163 --~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~---~ELkK~~a~i----~Sl~E~~----I~~KsT~G~~~A~Q 229 (536)
T KOG4648|consen 163 --LYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKN---IELKKSLARI----NSLRERK----IATKSTPGFTPARQ 229 (536)
T ss_pred --HHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCccc---HHHHHHHHHh----cchHhhh----HHhhcCCCCCcccc
Confidence 234566778888899999999999999999999998 4433333322 2222221 1122222221111
Q ss_pred --------HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1801 --------NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1801 --------~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
-.-|..+...|.++.|+.+|-+-+.....+.....+ +..|.+.-+++.|+...-+++.++|....+....|
T Consensus 230 ~~~Q~l~~K~~G~~Fsk~~~~~~~i~~~~~~~A~~~~~~~L~~~-~~~~~KI~~~~~~~~~~~~~~~~~~s~~~~~s~~~ 308 (536)
T KOG4648|consen 230 GMIQILPIKKPGYKFSKKAMRSVPVVDVVSPRATIDDSNQLRIS-DEDIDKIFNSNCGIIEEVKKTNPKPTPMPDTSGPP 308 (536)
T ss_pred chhhhccccCcchhhhhhhccccceeEeeccccccCccccCccc-HHHHHHHhhcchhHHHHHHhcCCCCCcCcccCCCc
Confidence 224666778888999999888877665555544444 77788888999999999999988888666666665
Q ss_pred cchhhhcc
Q psy8682 1873 LEPRAVKE 1880 (1956)
Q Consensus 1873 ~l~~~lg~ 1880 (1956)
....-.|.
T Consensus 309 ~A~T~~~~ 316 (536)
T KOG4648|consen 309 KAETIAKT 316 (536)
T ss_pred hhHHHHhh
Confidence 54333333
No 190
>KOG3617|consensus
Probab=98.01 E-value=0.00032 Score=89.65 Aligned_cols=212 Identities=13% Similarity=0.084 Sum_probs=136.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.+.-.++....|-.. +|++....|+. +.-...|......|..++|..+|++.-. +-.+-..|...
T Consensus 775 VAkVClGhm~~aRga----RAlR~a~q~~~---e~eakvAvLAieLgMlEeA~~lYr~ckR--------~DLlNKlyQs~ 839 (1416)
T KOG3617|consen 775 VAKVCLGHMKNARGA----RALRRAQQNGE---EDEAKVAVLAIELGMLEEALILYRQCKR--------YDLLNKLYQSQ 839 (1416)
T ss_pred HHHHhhhhhhhhhhH----HHHHHHHhCCc---chhhHHHHHHHHHhhHHHHHHHHHHHHH--------HHHHHHHHHhc
Confidence 455667777777666 45554555553 2334456677788999999999998743 44567788899
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------CCCCC-chhhhhhcCcchhhhh
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQ------ESNPR-PSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~------e~dPd-~eay~~Ll~~~Kl~e~ 1725 (1956)
|.+++|.+..+.--.+. -...|++.|.-+...++.+.|+++|+++-.... ..+|. .+.|..- ...
T Consensus 840 g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~------~~d 911 (1416)
T KOG3617|consen 840 GMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR------KRD 911 (1416)
T ss_pred ccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh------ccc
Confidence 99999988765432222 234788999999999999999999998632200 00222 1111111 123
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...|.-.|..+...|+.+.|+.+|..|-. |+.+.++.+-+|+.++|....++ ..+-.+.+.||.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D-----------~fs~VrI~C~qGk~~kAa~iA~e-----sgd~AAcYhlaR 975 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKD-----------YFSMVRIKCIQGKTDKAARIAEE-----SGDKAACYHLAR 975 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhh-----------hhhheeeEeeccCchHHHHHHHh-----cccHHHHHHHHH
Confidence 34455678888899999999999988743 34444555556666666554443 444555666666
Q ss_pred HHHHCCChHHHHHHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKA 1823 (1956)
.|...|++.+|+..|.+|
T Consensus 976 ~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred HhhhhHHHHHHHHHHHHH
Confidence 666666666666666554
No 191
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.99 E-value=0.00011 Score=91.30 Aligned_cols=122 Identities=13% Similarity=0.208 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.|...+...++++.|+..+++..+. +|. ....++.++...++..+|++.+.++++..|
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~----~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p 231 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRER----DPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENP 231 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhc----CCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 3455566678999999999999888 666 234578889899999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
.+ ...+...+..+...++++.|+.+.++++.+.|.+...|..|+.+|..+|++++|+..++.+-
T Consensus 232 ~d---~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 232 QD---SELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 98 99999999999999999999999999999999999999999999999999999998777543
No 192
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.97 E-value=0.0044 Score=75.13 Aligned_cols=271 Identities=12% Similarity=0.020 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+-+.+..+....-.|+++.|..-|+.++. +|.. .-.+..|-.-....|..+.|..+-+++....|.-..++...-...
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r 198 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEAR 198 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHH
Confidence 44777788888999999999999998874 2321 112333333445789999999999999999999998888888888
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL-SSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay-~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
+..|+++.|+++.+..... ....++ ..+...+-+.-+... .-..+...|...-.+++++.|+.
T Consensus 199 ~~~gdWd~AlkLvd~~~~~-~vie~~------------~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdl--- 262 (531)
T COG3898 199 CAAGDWDGALKLVDAQRAA-KVIEKD------------VAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDL--- 262 (531)
T ss_pred HhcCChHHHHHHHHHHHHH-Hhhchh------------hHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcc---
Confidence 9999999999999877654 001111 011111112122222 23456888999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH---hhCCCcHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL---QLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL---eL~PdnaeA~~~LA~ 1839 (1956)
..+-..-+..++..|+..++-..++.+.+..|.- .++.+|....--+.++.-++++- .+.|++.+.....+.
T Consensus 263 vPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP-----~ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~ 337 (531)
T COG3898 263 VPAAVVAARALFRDGNLRKGSKILETAWKAEPHP-----DIALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAE 337 (531)
T ss_pred chHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh-----HHHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHH
Confidence 6677778899999999999999999999998863 23444554444445555555554 468999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1840 ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.-+..|++..|..--+.+....|. ..++..++.+....--.+.-+...+.++...-.+
T Consensus 338 aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav~APrd 395 (531)
T COG3898 338 AALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRD 395 (531)
T ss_pred HHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCC
Confidence 999999999999999999999997 4467777777665523345566778887766554
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.97 E-value=0.00094 Score=78.00 Aligned_cols=189 Identities=13% Similarity=0.095 Sum_probs=139.8
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.+..++.-|...++.|++++|+..|+++...+|..+ .+...++.++++.+++++|+...++.+.+ .|.
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l----yP~----- 103 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL----YPT----- 103 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh----CCC-----
Confidence 467899999999999999999999999999987654 67889999999999999999999999999 777
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSS--------REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~--------lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~f 1786 (1956)
.++...+++..|.++.. ..-..+|+..++..+...|++...+++...+..+--.+
T Consensus 104 -------~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~L---------- 166 (254)
T COG4105 104 -------HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDAL---------- 166 (254)
T ss_pred -------CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHH----------
Confidence 34455566666666552 23345677788888888888744444433332221111
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-C
Q psy8682 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYNLGITCVHLGANTQAVEHFLTALNQQ-A 1862 (1956)
Q Consensus 1787 ekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~LA~ay~klGdyEEAie~yekALeLd-P 1862 (1956)
+.--..+|..|.+.|.+..|+..++.+++..|+. .+++..+..+|..+|-.++|...- +.|..+ |
T Consensus 167 ----------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p 235 (254)
T COG4105 167 ----------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYP 235 (254)
T ss_pred ----------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCC
Confidence 1112346788888889999999998888876653 457888888899999888886554 445444 4
Q ss_pred C
Q psy8682 1863 A 1863 (1956)
Q Consensus 1863 d 1863 (1956)
+
T Consensus 236 ~ 236 (254)
T COG4105 236 D 236 (254)
T ss_pred C
Confidence 4
No 194
>KOG4234|consensus
Probab=97.91 E-value=9.4e-05 Score=82.61 Aligned_cols=101 Identities=19% Similarity=0.246 Sum_probs=55.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
|+-++..|+|++|..-|..|+.+.|.. ......|.+.|.++++++.++.|+..+.++++++|.+..++...|.+|.++
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM 181 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence 455556666666666666666665544 112234455555555555555555555555555555555555555555555
Q ss_pred CChHHHHHHHHHHHhhCCCcHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRA 1833 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA 1833 (1956)
.+|++|+..|++.++.+|....+
T Consensus 182 ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHH
Confidence 55555555555555555554433
No 195
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.90 E-value=0.00016 Score=76.23 Aligned_cols=96 Identities=25% Similarity=0.272 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYNL 1837 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~L 1837 (1956)
.+.+.+|.++-..|+.++|+..|++++...... ..++..+|.++..+|++++|+..+++++...|+ +......+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 468899999999999999999999999976544 578999999999999999999999999999888 77888889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1838 GITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALe 1859 (1956)
+.++...|++++|+..+-.++.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999999999999988875
No 196
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.89 E-value=0.00032 Score=79.34 Aligned_cols=197 Identities=15% Similarity=0.123 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
+..++..|..|-..|-..-|.-.|.+++.+.|+.+.+++.+|..+...|+|+.|.+.|+..+++ +|. |.
T Consensus 65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----Dp~---y~---- 133 (297)
T COG4785 65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPT---YN---- 133 (297)
T ss_pred HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----CCc---ch----
Confidence 4567778889999999999999999999999999999999999999999999999999999999 887 32
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
.+..+.|..++.-|++.-|.+-+.+-.+.+|++ .-...|..+- ...-+..+|...+.+-.+...+...
T Consensus 134 --------Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~D-PfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~W 201 (297)
T COG4785 134 --------YAHLNRGIALYYGGRYKLAQDDLLAFYQDDPND-PFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQW 201 (297)
T ss_pred --------HHHhccceeeeecCchHhhHHHHHHHHhcCCCC-hHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhh
Confidence 345677888889999999999999999999988 1112232222 2334667777655443332222222
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGF-------VRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-------aeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.|+..+ ..+|+..+ ...++++.+...++ .++++.||+.+...|+.++|...|+-|+.-+-
T Consensus 202 G~~iV~---~yLgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannV 268 (297)
T COG4785 202 GWNIVE---FYLGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNV 268 (297)
T ss_pred hHHHHH---HHHhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhH
Confidence 232222 22333321 22344444433332 46899999999999999999999999887643
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.89 E-value=3e-05 Score=71.98 Aligned_cols=67 Identities=33% Similarity=0.379 Sum_probs=60.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~ 1681 (1956)
++..|++++|+..|++++..+|++..+++.+|.+|...|++++|...+++++..+|+++..+..++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 4678999999999999999999999999999999999999999999999999999998877776665
No 198
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.88 E-value=0.00019 Score=84.24 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGA 1805 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ 1805 (1956)
.++.|.-++..|+|..|...|..-++..|++...+.+++.||.+++.+|+|++|...|..+.+-.|++ +++++.||.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~ 223 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV 223 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence 77888889999999999999999999999887788899999999999999999999999999887664 688999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
+...+|+.++|...|+++++..|+...+..
T Consensus 224 ~~~~l~~~d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 224 SLGRLGNTDEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHhcCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 999999999999999999999888765543
No 199
>KOG4234|consensus
Probab=97.88 E-value=6e-05 Score=84.13 Aligned_cols=107 Identities=19% Similarity=0.261 Sum_probs=96.1
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS-----RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~Pdna-----eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~a 1840 (1956)
+-.-|.-++..|+|++|..-|..||.+.|..+ ..|.+.|.+++++++++.|+..+.+||+++|.+..++...|.+
T Consensus 98 lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 98 LKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred HHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 44457778899999999999999999998753 5788999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1841 CVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1841 y~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
|.++.+|++|++.|++.+.++|....+.-...
T Consensus 178 yek~ek~eealeDyKki~E~dPs~~ear~~i~ 209 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPSRREAREAIA 209 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence 99999999999999999999999766554443
No 200
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.86 E-value=4.2e-05 Score=71.02 Aligned_cols=64 Identities=23% Similarity=0.289 Sum_probs=34.0
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1775 ~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
..|++++|+..|++++..+|++..++..+|.+|...|++++|...+++++..+|+++..+..++
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 4455555555555555555555555555555555555555555555555555555544444333
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.85 E-value=3.6e-05 Score=72.49 Aligned_cols=63 Identities=24% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
.+|...+++++|+.++++++.++|+++..+..+|.++..+|++.+|+..|+++++..|+++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 345555555555555555555555555555555555555555555555555555555554443
No 202
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.84 E-value=6.6e-05 Score=70.66 Aligned_cols=69 Identities=32% Similarity=0.482 Sum_probs=52.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
..+|...+++++|++++++++.++|+++.++..+|.++..+|++.+|+..|+++++..|++..+...++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 456777788888888888888888888888888888888888888888888888887777766554443
No 203
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.82 E-value=7.5e-05 Score=92.76 Aligned_cols=64 Identities=19% Similarity=0.262 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL---WNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA---~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+.+++++|.+|..+|+|++|+.+|+++++++|++..+ |+++|.+|..+|++++|+.+|++|+++
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555555555555555555555555532 555555555555555555555555554
No 204
>KOG2053|consensus
Probab=97.80 E-value=0.0075 Score=79.30 Aligned_cols=117 Identities=12% Similarity=0.039 Sum_probs=96.5
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
++|.+|++. ..+.++..|+.+. +....|..+.+.|++++|..+++..-...+++-..+..+-.+|..+|++++|
T Consensus 23 ~qfkkal~~--~~kllkk~Pn~~~----a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 23 SQFKKALAK--LGKLLKKHPNALY----AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred HHHHHHHHH--HHHHHHHCCCcHH----HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457777776 5666665555554 8888999999999999999988887777788888999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
..+|++++..+|. ...++.+-.+|.+.+.|.+-.+.--+..+.
T Consensus 97 ~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~ 139 (932)
T KOG2053|consen 97 VHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQLYKN 139 (932)
T ss_pred HHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999 788888888898888887655555444444
No 205
>KOG0128|consensus
Probab=97.80 E-value=0.00026 Score=91.60 Aligned_cols=233 Identities=16% Similarity=0.128 Sum_probs=163.4
Q ss_pred ccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCC----CCCChHHHHHHHHHHhhcccHHHHHHHHHHHH
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS----QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 759 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~----~~~d~dV~~~La~Ly~~sgeyEkArelFerAL 759 (1956)
|.-||-.|++-.-.+++..++.. ..+....+|.+|+..-.. +.-.-+++.-+-+.|-.+-..++-...|.+.+
T Consensus 182 ~v~iw~e~~~y~~~~~~~~~~~~---d~k~~R~vf~ral~s~g~~~t~G~~~we~~~E~e~~~l~n~~~~qv~a~~~~el 258 (881)
T KOG0128|consen 182 SVPIWEEVVNYLVGFGNVAKKSE---DYKKERSVFERALRSLGSHITEGAAIWEMYREFEVTYLCNVEQRQVIALFVREL 258 (881)
T ss_pred cchHHHHHHHHHHhccccccccc---cchhhhHHHHHHHhhhhhhhcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34589999997777777644433 566888899999886553 12233445555555656666677888888887
Q ss_pred hhCCCC--HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 760 QVRPDF--TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYE 837 (1956)
Q Consensus 760 kkfP~d--~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfE 837 (1956)
+. |-| ..-|-.+..+-.+. +.....+.+.+...+...+..|++.+...+.....|+.|++||+..|+.-+...++|
T Consensus 259 ~~-~~D~~~~~~~~~~~sk~h~-~~~~~~~~~~a~~~l~~~~~~~e~~~q~~~~~~q~~~~yidfe~~~G~p~ri~l~~e 336 (881)
T KOG0128|consen 259 KQ-PLDEDTRGWDLSEQSKAHV-YDVETKKLDDALKNLAKILFKFERLVQKEPIKDQEWMSYIDFEKKSGDPVRIQLIEE 336 (881)
T ss_pred hc-cchhhhhHHHHHHHHhcch-HHHHhccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 65 333 23332222220000 001233444555555566777888888777777889999999999999999999999
Q ss_pred HhhcccCCCHHHHHHHHHH-HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHhhccCchHHH
Q psy8682 838 RALDVDHRNITLWLKYTEL-EMRNRQVNHARNLWDRAVTILPRANQFWYKYT-YMEEMLENVAGKLFVFHRDSISQVTLW 915 (1956)
Q Consensus 838 RALs~~Pk~~dLWl~Yadf-E~k~gnierARsLFERAL~~~Pks~~LW~kYi-dfE~k~Gd~e~aR~VfERAL~~~~~LW 915 (1956)
|++...+...++|+.|.-+ -+.++-.+++-.++-|+++.||...+||.+|+ .||+...+.+-+-..+++++.....+.
T Consensus 337 R~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~cp~tgdL~~rallAleR~re~~~vI~~~l~~~ls~~~~l~ 416 (881)
T KOG0128|consen 337 RAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRSCPWTGDLWKRALLALERNREEITVIVQNLEKDLSMTVELH 416 (881)
T ss_pred HHHHhccccHHHHhhhhhhcccccccccccccccchhhcCCchHHHHHHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999988665 23455567788889999999999999999887 455555567777788888886666666
Q ss_pred HHHHHh
Q psy8682 916 LGALTL 921 (1956)
Q Consensus 916 l~Yi~f 921 (1956)
..|+.+
T Consensus 417 ~~~~~~ 422 (881)
T KOG0128|consen 417 NDYLAY 422 (881)
T ss_pred HHHHHH
Confidence 666554
No 206
>KOG2796|consensus
Probab=97.79 E-value=0.011 Score=68.94 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=120.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR------PDDSR 1798 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~------Pdnae 1798 (1956)
.....+.++.++...|.|.-....+.+.++.+|.. ++.....+|.+.++.|+.+.|..+|+.+-+.. .....
T Consensus 176 l~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~--~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~ 253 (366)
T KOG2796|consen 176 LGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQ--EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIM 253 (366)
T ss_pred HHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcc--cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHH
Confidence 34456778899999999999999999999988543 48889999999999999999999999655432 23445
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+..+.+.++.-.+++.+|...|.+.+..+|.++.+.++.|.|+..+|+..+|++.++.++...|...
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 6777888899999999999999999999999999999999999999999999999999999999843
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.76 E-value=0.0016 Score=72.46 Aligned_cols=154 Identities=17% Similarity=0.160 Sum_probs=100.9
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS-IEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALe-LdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
..+.=+.+.+..-..+.+...|.. .-.+.||..+...|++.+|...|++++. +..+++..+..++++.+..+++..|.
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~ 144 (251)
T COG4700 66 LQQKLDPERHLREATEELAIAPTV-QNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQ 144 (251)
T ss_pred HHHhcChhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHH
Confidence 333334455555555555555543 3466778888888888888888887775 34566777777888888888888888
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly 1773 (1956)
..+++..+. +|. . ..++..+.+|..+..+|++.+|...|+.++...|+ +.+....+..+
T Consensus 145 ~tLe~l~e~----~pa---~----------r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg----~~ar~~Y~e~L 203 (251)
T COG4700 145 QTLEDLMEY----NPA---F----------RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG----PQARIYYAEML 203 (251)
T ss_pred HHHHHHhhc----CCc---c----------CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC----HHHHHHHHHHH
Confidence 888887777 555 1 12234455677777777777777777777777766 45555666677
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy8682 1774 NLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekAL 1790 (1956)
..+|+.++|...+....
T Consensus 204 a~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 204 AKQGRLREANAQYVAVV 220 (251)
T ss_pred HHhcchhHHHHHHHHHH
Confidence 77776666665554443
No 208
>KOG2053|consensus
Probab=97.74 E-value=0.0045 Score=81.31 Aligned_cols=228 Identities=11% Similarity=0.024 Sum_probs=165.7
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALD 1694 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe 1694 (1956)
....+++.+|+....+.++.+|+...+....|.++.++|+.++|..+++..-...+++...+-.+-.+|..++++++|..
T Consensus 19 ~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 19 LLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred HhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH
Confidence 45678999999999999999999999999999999999999999988888777788888899999999999999999999
Q ss_pred HHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q psy8682 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1695 ~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~ 1774 (1956)
+|++++.. +|+ +.. .+.+-.+|.+.+.|.+-.+.--+..+..|++ ....|..+..++.
T Consensus 99 ~Ye~~~~~----~P~---eel-------------l~~lFmayvR~~~yk~qQkaa~~LyK~~pk~--~yyfWsV~Slilq 156 (932)
T KOG2053|consen 99 LYERANQK----YPS---EEL-------------LYHLFMAYVREKSYKKQQKAALQLYKNFPKR--AYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHhh----CCc---HHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--cchHHHHHHHHHH
Confidence 99999999 777 222 2334467777777777666666666677876 2223444444443
Q ss_pred HcCCH---------HHHHHHHHHHHHhC-CCCHHH-HHHHHHHHHHCCChHHHHHHHHHHH-hh-CCCcHHHHHHHHHHH
Q psy8682 1775 LSDEY---------DKAVDCFRSALQVR-PDDSRL-WNRLGASLANGNRPEEAVEAYHTAL-QL-SPGFVRARYNLGITC 1841 (1956)
Q Consensus 1775 ~lGdy---------eEAie~fekALel~-PdnaeA-~~nLG~ay~qlGryeEAie~yeKAL-eL-~PdnaeA~~~LA~ay 1841 (1956)
..... .-|...+++.++.. +-...+ ....-.++..+|++++|...+..-+ +. .+.+...-......+
T Consensus 157 s~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dll 236 (932)
T KOG2053|consen 157 SIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLL 236 (932)
T ss_pred hccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 33222 23555666666665 222221 1223356678899999999994433 33 333444444556677
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn 1864 (1956)
..++++.+-.+...+++...+++
T Consensus 237 k~l~~w~~l~~l~~~Ll~k~~Dd 259 (932)
T KOG2053|consen 237 KLLNRWQELFELSSRLLEKGNDD 259 (932)
T ss_pred HHhcChHHHHHHHHHHHHhCCcc
Confidence 77888888888888888888886
No 209
>KOG3617|consensus
Probab=97.68 E-value=0.0013 Score=84.30 Aligned_cols=211 Identities=18% Similarity=0.182 Sum_probs=152.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHH--------HHHhCCCCH-HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEA--------AAKQEPDNA-EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fek--------ALeldPdna-eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
.|-++|....+..+.+-|.-++-. |+.....+. +.-...|.+...+|..++|+.+|+++-..+
T Consensus 759 vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-------- 830 (1416)
T KOG3617|consen 759 VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-------- 830 (1416)
T ss_pred HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH--------
Confidence 788888888888777777666532 222211111 333456677788999999999999986543
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA----- 1752 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA----- 1752 (1956)
.|-.+|...|.+++|.+..+.--++ .+-..|++.|.-+...++.+.|+++|+++
T Consensus 831 LlNKlyQs~g~w~eA~eiAE~~DRi---------------------HLr~Tyy~yA~~Lear~Di~~AleyyEK~~~haf 889 (1416)
T KOG3617|consen 831 LLNKLYQSQGMWSEAFEIAETKDRI---------------------HLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAF 889 (1416)
T ss_pred HHHHHHHhcccHHHHHHHHhhccce---------------------ehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHH
Confidence 4556788899999998876543222 23456888899999999999999999886
Q ss_pred -----HHhCCCC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHH
Q psy8682 1753 -----ARQCPSQ-------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820 (1956)
Q Consensus 1753 -----Lel~P~n-------~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~y 1820 (1956)
+.-+|.. ..+...|..-|..+...|+.+.|+.+|..|- -|+.+-.+..-+|+.++|...-
T Consensus 890 ev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~--------D~fs~VrI~C~qGk~~kAa~iA 961 (1416)
T KOG3617|consen 890 EVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK--------DYFSMVRIKCIQGKTDKAARIA 961 (1416)
T ss_pred HHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh--------hhhhheeeEeeccCchHHHHHH
Confidence 2333332 1224556666777788888888888887753 3667777788888888887655
Q ss_pred HHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1821 HTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1821 eKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
++ ..+..+-|.||..|...|+..+|+..|.+|..
T Consensus 962 ~e-----sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 962 EE-----SGDKAACYHLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred Hh-----cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 54 46677899999999999999999999887654
No 210
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.66 E-value=0.00083 Score=74.70 Aligned_cols=114 Identities=13% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cHHHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQ-VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--FVRARYNLGITCV 1842 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALe-l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--naeA~~~LA~ay~ 1842 (1956)
.+.||..+...|++.+|...|++++. +..+++..+..++.+.+..+++.+|...+++..+.+|. .+.....+|.+|.
T Consensus 92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 44455555555555555555555543 33444455555555555555555555555555554443 2334444555555
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
..|++.+|...|+.++...|+ +.+....+..+..+|.
T Consensus 172 a~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr 208 (251)
T COG4700 172 AQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGR 208 (251)
T ss_pred hcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcc
Confidence 555555555555555555544 2233333444444443
No 211
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.65 E-value=0.00072 Score=73.07 Aligned_cols=87 Identities=9% Similarity=0.150 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS---RLWNR 1802 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna---eA~~n 1802 (1956)
+..++.-|...+..|+|++|++.|+......|.......+...+|.+|+..+++++|+..+++-++++|.++ .+++.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~ 89 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM 89 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 345666777777777788887777777777776655667777777777777777777777777777777654 45666
Q ss_pred HHHHHHHCCC
Q psy8682 1803 LGASLANGNR 1812 (1956)
Q Consensus 1803 LG~ay~qlGr 1812 (1956)
.|.+++.+..
T Consensus 90 ~gL~~~~~~~ 99 (142)
T PF13512_consen 90 RGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHhh
Confidence 6766666544
No 212
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.00089 Score=78.75 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=101.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1676 l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
.++.|.-++..|+|..|...|...++. .|+ ....+.+++.||.+++.+|++++|...|..+.+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~----YP~------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~ 207 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKK----YPN------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD 207 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHh
Confidence 678888899999999999999999999 776 3456788999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
.|++...+++++.+|.+...+|+.++|...|+++++..|+...+....
T Consensus 208 ~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak 255 (262)
T COG1729 208 YPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAK 255 (262)
T ss_pred CCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHH
Confidence 998877789999999999999999999999999999999987765443
No 213
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.59 E-value=0.00036 Score=86.88 Aligned_cols=68 Identities=21% Similarity=0.247 Sum_probs=58.3
Q ss_pred hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP---DVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a---~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
.|..+.+++++|.+|...|+|++|+..|+++++++|++ . .+|+++|.+|..+|++++|+.++++|+++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 36788888888998888999999999999999888887 5 35888899998889999999999888887
No 214
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=97.56 E-value=0.00034 Score=74.36 Aligned_cols=107 Identities=20% Similarity=0.439 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHhhcC---CCHHHHHHHHHHHHHc----CCHHHHHHHHHHhhcc---------cCCCHHHHHHHHHHHHH
Q psy8682 796 HRKRKAFEDNIRKNR---MVISNWIKYAQWEESQ----KQVDRARSIYERALDV---------DHRNITLWLKYTELEMR 859 (1956)
Q Consensus 796 ~RAR~lyEraL~~~~---~s~~lWlkYAqfE~~~----Gd~ErARsIfERALs~---------~Pk~~dLWl~YadfE~k 859 (1956)
++.|+.||..|.... .-..+|.+|++|..+. +....-+.++||+++. +++...||+.|+++..
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~RylkiWi~ya~~~~- 80 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYLKIWIKYADLSS- 80 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHHHHHHHHHTTBS-
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHHHHHHHHHHHcc-
Confidence 356788999988764 3468999999997653 5667788999999983 3344789999999743
Q ss_pred cCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 860 NRQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 860 ~gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
.++.+|+..... .-+.+.+|..|+.+.+..|+.++|..||.++|
T Consensus 81 -----~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 -----DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp -----HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred -----CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 889999998773 34559999999999999999999999999875
No 215
>KOG1586|consensus
Probab=97.54 E-value=0.0031 Score=72.44 Aligned_cols=133 Identities=14% Similarity=0.171 Sum_probs=65.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIE------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLd------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~ 1719 (1956)
|..|...+++..|=..|.++-+.. .+-...|...+.+|.. .+..+|..++++++++ |.....
T Consensus 41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieI----------yt~~Gr- 108 (288)
T KOG1586|consen 41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEI----------YTDMGR- 108 (288)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHH----------HHhhhH-
Confidence 555555556666666665554432 1122344444554433 3666666666666666 555551
Q ss_pred chhhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1720 SKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQS---IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1720 ~Kl~e~a~a~lnLA~ay~~l-GdyeEAle~LekALel~P~n~---~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
....+.-+..+|.+|... .++++|+.+|+++-+...... .....+...+.....+++|.+|+..|++....
T Consensus 109 --f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 109 --FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS 183 (288)
T ss_pred --HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223444445555555543 556666666666555544330 01112223333334445555555555554443
No 216
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.54 E-value=0.0001 Score=70.55 Aligned_cols=63 Identities=27% Similarity=0.349 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhh---CC----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQL---SP----GFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL---~P----dnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.++.++|.+|..+|++++|+.+|++++++ .+ ....++.++|.++..+|++++|++++++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44555666666666666666666666543 11 12345666777777777777777777776665
No 217
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.49 E-value=0.0019 Score=69.98 Aligned_cols=109 Identities=13% Similarity=0.078 Sum_probs=86.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
.+..++.-|......|+|++|++.|+.+... .|- .+-...+.+.++.+|+..+++++|+..+++
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r----yP~------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~r 72 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR----YPF------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDR 72 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----CCC------------CcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 3456888899999999999999999999888 565 233456778899999999999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHhCCCC
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDE---------------YDKAVDCFRSALQVRPDD 1796 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGd---------------yeEAie~fekALel~Pdn 1796 (1956)
-++++|.++....+++..|.+++.+.. ..+|...|++.+...|++
T Consensus 73 FirLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 73 FIRLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HHHhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 999999997777899999999887765 445555555555555544
No 218
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.48 E-value=0.005 Score=77.12 Aligned_cols=227 Identities=13% Similarity=0.125 Sum_probs=139.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHcC
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF--TNEA 1687 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY--~~lG 1687 (1956)
.+-....+..+...-++.-++|++++|+.+.+|..||.-. ..-..+|.++|+++++.... .++... ...|
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~------~lg~s~~~~~~g 244 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEA------SLGKSQFLQHHG 244 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHH------hhchhhhhhccc
Confidence 3444455677888888888999999988888888776532 23457788888887775421 111111 1111
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHH
Q psy8682 1688 CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN 1767 (1956)
Q Consensus 1688 dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~ 1767 (1956)
..-++ .... + ..-...+...+|.+..++|+.++|++.++..++..|.. ....++.
T Consensus 245 ~~~e~------~~~R----d--------------t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~-~~l~Ire 299 (539)
T PF04184_consen 245 HFWEA------WHRR----D--------------TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL-DNLNIRE 299 (539)
T ss_pred chhhh------hhcc----c--------------cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc-chhhHHH
Confidence 11010 0000 0 01123344668999999999999999999999888763 3466889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHH-CCC---------------hHHHHHHHHHHHhhCCCc
Q psy8682 1768 GLGVLFNLSDEYDKAVDCFRSALQV-RPDDSRLWNRLGASLAN-GNR---------------PEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1768 ~LG~ly~~lGdyeEAie~fekALel-~PdnaeA~~nLG~ay~q-lGr---------------yeEAie~yeKALeL~Pdn 1830 (1956)
+|..++..++.|.++...+.+--++ -|+.+...+.-|.+..+ .++ -..|++.+.+|++.+|..
T Consensus 300 nLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 300 NLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999888885433 24555555544443322 111 124667888888888876
Q ss_pred HHHHHHHH------HHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1831 VRARYNLG------ITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1831 aeA~~~LA------~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
+..+..+- .-+.+.|+ .||+.|---.++.-.+.+.++..
T Consensus 380 p~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~veGAL~l 424 (539)
T PF04184_consen 380 PKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRVEGALNL 424 (539)
T ss_pred chhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcCHhHHHH
Confidence 65544321 12344554 66776666666555544444433
No 219
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.45 E-value=0.037 Score=67.56 Aligned_cols=217 Identities=16% Similarity=0.093 Sum_probs=167.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHH-----HHHHHHHHHHHc
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI---EPKNLE-----ALMAISICFTNE 1686 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL---dPdnae-----Al~~LA~aY~~l 1686 (1956)
....|.++.|+.+-+++-...|.-+.++...-...+..|+++.|+++.+..... .++..+ .+...+.... .
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l-d 242 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL-D 242 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh-c
Confidence 346799999999999999999999999998888999999999999999876553 233221 1222233222 3
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
.+...|...-.+++++ .|+ ...+-..-+..++..|+..++-.+++.+.+..|.- .
T Consensus 243 adp~~Ar~~A~~a~KL----~pd---------------lvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP----~-- 297 (531)
T COG3898 243 ADPASARDDALEANKL----APD---------------LVPAAVVAARALFRDGNLRKGSKILETAWKAEPHP----D-- 297 (531)
T ss_pred CChHHHHHHHHHHhhc----CCc---------------cchHHHHHHHHHHhccchhhhhhHHHHHHhcCCCh----H--
Confidence 4578888899999998 666 33344566889999999999999999999999874 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRS---ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fek---ALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
++.+|....--+.++.-+++ ...+.|++.+....++......|++..|...-+.+....|.. .++..|+.+-..
T Consensus 298 --ia~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeA 374 (531)
T COG3898 298 --IALLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEA 374 (531)
T ss_pred --HHHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhh
Confidence 23344433333334444444 445689999999999999999999999999999999988874 466777887766
Q ss_pred c-CCHHHHHHHHHHHHHh
Q psy8682 1844 L-GANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1844 l-GdyEEAie~yekALeL 1860 (1956)
. |+-.++...+-++++-
T Consensus 375 etGDqg~vR~wlAqav~A 392 (531)
T COG3898 375 ETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred ccCchHHHHHHHHHHhcC
Confidence 5 9999999999999874
No 220
>KOG1586|consensus
Probab=97.44 E-value=0.0046 Score=71.13 Aligned_cols=190 Identities=11% Similarity=0.079 Sum_probs=132.7
Q ss_pred HHHcCChHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchh
Q psy8682 1649 LAENEQDPQAIAALSKCLSIE------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLd------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl 1722 (1956)
+.-.+++++|.++|.++-... ..-..++...|.++.+.|.-.+|-..|-.+-.. |...- .
T Consensus 24 fgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~c----------ykk~~----~ 89 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANC----------YKKVD----P 89 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH----------hhccC----h
Confidence 334458899999998876543 122356777888888888877777777766655 33332 1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCC-----
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL-SDEYDKAVDCFRSALQVRPDD----- 1796 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~-lGdyeEAie~fekALel~Pdn----- 1796 (1956)
.+.+..+..-..+|...|++..|..+ +..+|.+|.. +.++++|+.+|+++-+.....
T Consensus 90 ~eAv~cL~~aieIyt~~Grf~~aAk~-----------------~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ss 152 (288)
T KOG1586|consen 90 EEAVNCLEKAIEIYTDMGRFTMAAKH-----------------HIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSS 152 (288)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHhh-----------------hhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhh
Confidence 23444455566778888888776544 3445555543 378888999999887765332
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1797 -SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-------RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1797 -aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-------eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
...+...+..-..+++|.+|+..|++.....-++. ..++.-|.|++...+.-.+...+++..+++|...+.+
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 24566677777889999999999999887544432 2355668888888899899999999999999987754
Q ss_pred h
Q psy8682 1869 T 1869 (1956)
Q Consensus 1869 ~ 1869 (1956)
-
T Consensus 233 E 233 (288)
T KOG1586|consen 233 E 233 (288)
T ss_pred H
Confidence 3
No 221
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.43 E-value=0.0057 Score=76.66 Aligned_cols=192 Identities=14% Similarity=0.124 Sum_probs=130.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1645 LGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1645 LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
+..-..+..+.++-++.-++|++++|+.+++|..||.- ...-..+|.++|+++++. ... ..
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkA----gE~------~l------- 234 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE--EASTIVEAEELLRQAVKA----GEA------SL------- 234 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc--cccCHHHHHHHHHHHHHH----HHH------hh-------
Confidence 33444566777888899999999999999999888752 234578999999999887 111 11
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--DSRLWNR 1802 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--naeA~~n 1802 (1956)
.........|..-+ .......+ .-..+...+|.+..++|+.++|++.++..++..|. +..+..+
T Consensus 235 ------g~s~~~~~~g~~~e-------~~~~Rdt~-~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~Iren 300 (539)
T PF04184_consen 235 ------GKSQFLQHHGHFWE-------AWHRRDTN-VLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIREN 300 (539)
T ss_pred ------chhhhhhcccchhh-------hhhccccc-hhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHH
Confidence 00011111111111 11111111 22456778999999999999999999999998775 4568999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhh-CCCcHHHHHHHHHHHHH-cCC---------------HHHHHHHHHHHHHhcCCCh
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQL-SPGFVRARYNLGITCVH-LGA---------------NTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL-~PdnaeA~~~LA~ay~k-lGd---------------yEEAie~yekALeLdPdn~ 1865 (1956)
|..++..+++|.++...+.+.-.+ -|+.+...+..|.+..+ .++ -..|++.+.+|++.+|..+
T Consensus 301 Lie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 301 LIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999886443 35555555555444322 111 2357789999999999977
Q ss_pred hchh
Q psy8682 1866 DGLT 1869 (1956)
Q Consensus 1866 dA~~ 1869 (1956)
.-+.
T Consensus 381 ~YLL 384 (539)
T PF04184_consen 381 KYLL 384 (539)
T ss_pred hhhh
Confidence 6433
No 222
>KOG4555|consensus
Probab=97.42 E-value=0.0032 Score=66.73 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=85.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----RLWNRLG 1804 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----eA~~nLG 1804 (1956)
+-..|..+...|+.+.|++.|.+++.+.|.. +.+|++.+..+..+|+.++|+..+++++++..... .++...|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~r---aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg 122 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPER---ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRG 122 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccc---hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence 4445778888999999999999999999998 99999999999999999999999999999875533 5678889
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~Pdn 1830 (1956)
.+|..+|+-+.|...|+.|-++....
T Consensus 123 ~lyRl~g~dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 123 LLYRLLGNDDAARADFEAAAQLGSKF 148 (175)
T ss_pred HHHHHhCchHHHHHhHHHHHHhCCHH
Confidence 99999999999999999988776543
No 223
>KOG1585|consensus
Probab=97.40 E-value=0.0057 Score=70.70 Aligned_cols=204 Identities=11% Similarity=0.033 Sum_probs=124.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
.+..+...+..+...++|++|..++.++.+-..++ +.++-..|.+......+.++..+|++|..
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~---------- 99 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASE---------- 99 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----------
Confidence 44555666666666677777777777766543332 12233333333333444444444444322
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.|...|..+.|...++++- -..+.-++++|+.+|++++.+..
T Consensus 100 ----lY~E~GspdtAAmaleKAa----------------------------------k~lenv~Pd~AlqlYqralavve 141 (308)
T KOG1585|consen 100 ----LYVECGSPDTAAMALEKAA----------------------------------KALENVKPDDALQLYQRALAVVE 141 (308)
T ss_pred ----HHHHhCCcchHHHHHHHHH----------------------------------HHhhcCCHHHHHHHHHHHHHHHh
Confidence 2444444444444444443 34456678889999999887654
Q ss_pred CC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--
Q psy8682 1758 SQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-- 1826 (1956)
Q Consensus 1758 ~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL-- 1826 (1956)
.. ......+...++++.+..++.+|...+.+-... .+....++.....+|....+|..|..+|+...++
T Consensus 142 ~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 142 EDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred ccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 33 223456667788899999999988877764322 2444456666667777788999999999998775
Q ss_pred --CCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1827 --SPGFVRARYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1827 --~PdnaeA~~~LA~ay~klGdyEEAie~yek 1856 (1956)
.+++..+..+|-..| ..|+.++....+..
T Consensus 222 f~~sed~r~lenLL~ay-d~gD~E~~~kvl~s 252 (308)
T KOG1585|consen 222 FLKSEDSRSLENLLTAY-DEGDIEEIKKVLSS 252 (308)
T ss_pred ccChHHHHHHHHHHHHh-ccCCHHHHHHHHcC
Confidence 355666777776665 45777777665543
No 224
>KOG2796|consensus
Probab=97.38 E-value=0.017 Score=67.41 Aligned_cols=150 Identities=13% Similarity=0.100 Sum_probs=110.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
+..++..++-+. .+.+.++.++...|.|.-++..+++.++. +|. ........+|.+
T Consensus 166 ESsv~lW~KRl~------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~----~~e--------------~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 166 ESSIRLWRKRLG------RVMYSMANCLLGMKEYVLSVDAYHSVIKY----YPE--------------QEPQLLSGLGRI 221 (366)
T ss_pred hhHHHHHHHHHH------HHHHHHHHHHhcchhhhhhHHHHHHHHHh----CCc--------------ccHHHHHHHHHH
Confidence 444555555443 25667777777788888888888888877 544 122234457778
Q ss_pred HHhcCCHHHHHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1736 LSSREIHQQVLSLYLNAARQC----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~----P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
.++.|+.+.|..++++.-+.. ... ....+..+.+.+|.-.+++..|...|.+++..+|.++.+.++.|.|+...|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~~~kL~~~q-~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKVTQKLDGLQ-GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHHHhhhhccc-hhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 888888888888887554322 211 234566777888888889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhhCCCc
Q psy8682 1812 RPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~Pdn 1830 (1956)
+..+|++..+.+++..|..
T Consensus 301 ~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 9999999999999988873
No 225
>KOG4555|consensus
Probab=97.38 E-value=0.0021 Score=68.12 Aligned_cols=100 Identities=21% Similarity=0.252 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHH
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV----RARYNLGITC 1841 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna----eA~~~LA~ay 1841 (1956)
+-..|.++...|+.+.|++.|.+++.+.|..+.+|++.+.++.-+|+.++|+..+++|+++.-... .++...|.+|
T Consensus 46 LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~ly 125 (175)
T KOG4555|consen 46 LELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLY 125 (175)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence 445578888999999999999999999999999999999999999999999999999999865433 4788999999
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
..+|+.+.|...|+.|-++-...+
T Consensus 126 Rl~g~dd~AR~DFe~AA~LGS~FA 149 (175)
T KOG4555|consen 126 RLLGNDDAARADFEAAAQLGSKFA 149 (175)
T ss_pred HHhCchHHHHHhHHHHHHhCCHHH
Confidence 999999999999999988865543
No 226
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.37 E-value=0.0004 Score=66.40 Aligned_cols=73 Identities=12% Similarity=0.037 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1671 dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
+-..++.++|.+|..+|++++|+.+|++++++ ...... ..+..+.++.++|.++...|++++|+++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~----------~~~~~~--~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDI----------EEQLGD--DHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH----------HHHTTT--HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHHCC--CCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34568899999999999999999999999987 333321 134567888899999999999999999999
Q ss_pred HHHHh
Q psy8682 1751 NAARQ 1755 (1956)
Q Consensus 1751 kALel 1755 (1956)
+++++
T Consensus 71 ~al~i 75 (78)
T PF13424_consen 71 KALDI 75 (78)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98875
No 227
>KOG2471|consensus
Probab=97.33 E-value=0.0062 Score=75.40 Aligned_cols=159 Identities=9% Similarity=-0.007 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH-HHhCCC--------CHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC-LSIEPK--------NLEALM 1677 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA-LeLdPd--------naeAl~ 1677 (1956)
+....-..|....+...+..-.+-+.....+.+.++...+..++..|++.+|.+.+... +...|. ....++
T Consensus 208 ~~~ykVr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~N 287 (696)
T KOG2471|consen 208 LQLYKVRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNN 287 (696)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeec
Confidence 44455556677777778887778887777888999999999999999999999988653 222232 123468
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-C----CCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRP-G----QESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALel-g----~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
++|-+++..|.|..+..+|.++++. + ....|. ..+. +. ........++.|..|...|++-.|.++|.++
T Consensus 288 NlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~-~~~t-ls----~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 288 NLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPA-KTFT-LS----QNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred CcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCC-ccee-hh----cccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 9999999999999999999999962 0 000111 0000 00 1234567899999999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHH
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~ 1774 (1956)
......+ +..|..+|.+.+
T Consensus 362 v~vfh~n---PrlWLRlAEcCi 380 (696)
T KOG2471|consen 362 VHVFHRN---PRLWLRLAECCI 380 (696)
T ss_pred HHHHhcC---cHHHHHHHHHHH
Confidence 9988887 888998888754
No 228
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.27 E-value=0.00085 Score=74.74 Aligned_cols=104 Identities=15% Similarity=0.112 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDE----------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGd----------yeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
++.|.+.++.....+|.+ ++.+++-|.++..+.+ +++|+.-|++||.++|+...+++++|.+|..++
T Consensus 7 FE~ark~aea~y~~nP~D---adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A 83 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLD---ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLA 83 (186)
T ss_dssp HHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHh---HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 455666666666666665 6666666655544422 234444444455555555555555555544333
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
.+ .|+... ...-+++|..+|++|...+|++...+..|
T Consensus 84 ~l-------------~~d~~~----------A~~~F~kA~~~FqkAv~~~P~ne~Y~ksL 120 (186)
T PF06552_consen 84 FL-------------TPDTAE----------AEEYFEKATEYFQKAVDEDPNNELYRKSL 120 (186)
T ss_dssp HH----------------HHH----------HHHHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred hh-------------cCChHH----------HHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 20 000000 00115667777777777777766544444
No 229
>KOG3616|consensus
Probab=97.27 E-value=0.022 Score=72.57 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1829 dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..+.++..++..+...|++++|-++|-+|++++.-
T Consensus 993 k~~~vhlk~a~~ledegk~edaskhyveaiklnty 1027 (1636)
T KOG3616|consen 993 KMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLNTY 1027 (1636)
T ss_pred cCccchhHHhhhhhhccchhhhhHhhHHHhhcccc
Confidence 34567888888888899999999999999888754
No 230
>KOG1585|consensus
Probab=97.25 E-value=0.022 Score=66.12 Aligned_cols=182 Identities=15% Similarity=0.102 Sum_probs=110.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.....|-.+..+=.|...|+++.-+ -+.-...+..-...|...|..+.|-..+++|-+.
T Consensus 56 kA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~--------------- 120 (308)
T KOG1585|consen 56 KASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKA--------------- 120 (308)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH---------------
Confidence 3333555555555555555554322 2333444444556677888888888877776553
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----CCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----CPSQ 1759 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel----~P~n 1759 (1956)
....++++|+++|++++.+ -.. -- +.......+-..+.++....++.+|...+.+-... ....
T Consensus 121 lenv~Pd~AlqlYqralav----ve~------~d---r~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~ 187 (308)
T KOG1585|consen 121 LENVKPDDALQLYQRALAV----VEE------DD---RDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYN 187 (308)
T ss_pred hhcCCHHHHHHHHHHHHHH----Hhc------cc---hHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcc
Confidence 3445688888888888876 111 00 01223344556778889999999988777665332 1111
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCChHHHHHHHH
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PDDSRLWNRLGASLANGNRPEEAVEAYH 1821 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~----PdnaeA~~nLG~ay~qlGryeEAie~ye 1821 (1956)
.....+.....+|....+|..|..+++...++. +++..+..+|-..| ..|+.+++...+.
T Consensus 188 -~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 188 -SQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred -cHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 113445555566777789999999999987753 45566666665544 5677777665554
No 231
>KOG4642|consensus
Probab=97.06 E-value=0.0011 Score=76.23 Aligned_cols=92 Identities=15% Similarity=0.125 Sum_probs=57.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
.-|..|....+|..|+.+|.+++.++|.. +..+.+.+.+|+++++++.+.....+++++.|+...+++.+|..+...
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~---~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s 91 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTV---ASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQS 91 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCc---chhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhh
Confidence 34555555666666666666666666665 555666666666666666666666666666666666666666666666
Q ss_pred CChHHHHHHHHHHHh
Q psy8682 1811 NRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1811 GryeEAie~yeKALe 1825 (1956)
..|++|+..+.+|..
T Consensus 92 ~~~~eaI~~Lqra~s 106 (284)
T KOG4642|consen 92 KGYDEAIKVLQRAYS 106 (284)
T ss_pred ccccHHHHHHHHHHH
Confidence 666666666666644
No 232
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.06 E-value=0.0031 Score=70.42 Aligned_cols=81 Identities=17% Similarity=0.134 Sum_probs=56.4
Q ss_pred hhhhHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHH
Q psy8682 1722 LTRLANHTLTFRSPLSSREI----------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY----DKAVDCFR 1787 (1956)
Q Consensus 1722 l~e~a~a~lnLA~ay~~lGd----------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy----eEAie~fe 1787 (1956)
.|..++.+++-|.++..+.+ +++|+.-|++|+.++|+. ..+++.+|.+|..++.+ .+|..+
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~---hdAlw~lGnA~ts~A~l~~d~~~A~~~-- 95 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK---HDALWCLGNAYTSLAFLTPDTAEAEEY-- 95 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT----HHHHHHHHHHHHHHHHH---HHHHHHH--
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHHHHHHHhhcCChHHHHHH--
Confidence 47788899999999986644 456778888889999999 99999999999765532 222222
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1788 kALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
|++|..+|++|...+|++..
T Consensus 96 -------------------------F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 96 -------------------------FEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp -------------------------HHHHHHHHHHHHHH-TT-HH
T ss_pred -------------------------HHHHHHHHHHHHhcCCCcHH
Confidence 45677788888888887654
No 233
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=97.05 E-value=0.19 Score=61.02 Aligned_cols=121 Identities=21% Similarity=0.222 Sum_probs=87.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC-----
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PD----- 1795 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-Pd----- 1795 (1956)
......+..++.+..+.|.++.|...+.++....+.. ...+.+....+.++...|+..+|+..++..+... ..
T Consensus 143 ~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~ 222 (352)
T PF02259_consen 143 EELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSI 222 (352)
T ss_pred hHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccc
Confidence 3566778899999999999999999999998876433 1246788888999999999999999998888721 10
Q ss_pred ----------------------------CHHHHHHHHHHHHHC------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1796 ----------------------------DSRLWNRLGASLANG------NRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1796 ----------------------------naeA~~nLG~ay~ql------GryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
.+.++..+|...... +..++++..|.++++++|....+|+.+|..+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~ 302 (352)
T PF02259_consen 223 SNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFN 302 (352)
T ss_pred cHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHH
Confidence 013344455555555 6666667777777777776666666666655
Q ss_pred HH
Q psy8682 1842 VH 1843 (1956)
Q Consensus 1842 ~k 1843 (1956)
..
T Consensus 303 ~~ 304 (352)
T PF02259_consen 303 DK 304 (352)
T ss_pred HH
Confidence 43
No 234
>KOG4642|consensus
Probab=96.92 E-value=0.0021 Score=74.01 Aligned_cols=99 Identities=11% Similarity=0.073 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
++-+-..|..++...+|+.|+.+|.+++.++|..+..+.+.+.++++.++++.+.....+++++.|+...+++.+|..+.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l 89 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLL 89 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHH
Confidence 44556678888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHhcC
Q psy8682 1685 NEACLHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg 1703 (1956)
....|++|+..+.++..+.
T Consensus 90 ~s~~~~eaI~~Lqra~sl~ 108 (284)
T KOG4642|consen 90 QSKGYDEAIKVLQRAYSLL 108 (284)
T ss_pred hhccccHHHHHHHHHHHHH
Confidence 9999999999999997773
No 235
>KOG2610|consensus
Probab=96.87 E-value=0.043 Score=65.82 Aligned_cols=166 Identities=11% Similarity=-0.002 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~ 1720 (1956)
-....+.++...|++.+|-...++.++-.|.+.-++..--.++...|+.......+++.+.. -+++
T Consensus 105 k~h~~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~---wn~d----------- 170 (491)
T KOG2610|consen 105 KRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK---WNAD----------- 170 (491)
T ss_pred hhhhhHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc---cCCC-----------
Confidence 34455667778899999999999999999999988888888899999999999999988765 1233
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy8682 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---- 1796 (1956)
Q Consensus 1721 Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---- 1796 (1956)
+|-.....-.++-.+...|-|++|.+..++++++++.+ ..+...++.++...|+++++.+.+.+.-..-...
T Consensus 171 -lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D---~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mla 246 (491)
T KOG2610|consen 171 -LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD---CWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLA 246 (491)
T ss_pred -CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc---hHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHH
Confidence 12223334456788889999999999999999999998 8888889999999999999999988754322111
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
..-|...|.++...+.|+.|++.|.+-+
T Consensus 247 sHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 247 SHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred hhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 1235567888889999999999998865
No 236
>KOG1550|consensus
Probab=96.81 E-value=0.11 Score=68.21 Aligned_cols=240 Identities=18% Similarity=0.148 Sum_probs=160.1
Q ss_pred cHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHh
Q psy8682 1604 NETNAFALGQEKLRQ-----GDLPSAILYLEAAAKQ-----EPDNAEVWLSLGISLAENE-----QDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1604 daeall~LG~aylk~-----GdydEAIe~fekALel-----dPdnaeAl~~LA~ay~~lG-----dyeEALe~yeKALeL 1668 (1956)
+..+.+.+|.++..- .|.+.|+.+|+.+... .-.++.+.+.+|.+|.+.. ++..|+.+|.++.+.
T Consensus 243 ~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 243 HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 445777778777654 5899999999999761 1125568889999999853 678899999999876
Q ss_pred CCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh----cCC
Q psy8682 1669 EPKNLEALMAISICFTNEA---CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS----REI 1741 (1956)
Q Consensus 1669 dPdnaeAl~~LA~aY~~lG---dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGd 1741 (1956)
. ++++.+.+|.++..-. ++..|.++|..|... ....+.+.++.+|.. ..+
T Consensus 323 g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~---------------------G~~~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 323 G--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA---------------------GHILAIYRLALCYELGLGVERN 379 (552)
T ss_pred C--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc---------------------CChHHHHHHHHHHHhCCCcCCC
Confidence 5 4567888999887665 567999999998877 234566777777763 468
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH----CCC
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-DEYDKAVDCFRSALQVRPDDS----RLWNRLGASLAN----GNR 1812 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-GdyeEAie~fekALel~Pdna----eA~~nLG~ay~q----lGr 1812 (1956)
...|..+++++.+..+ +.+...++..+..- +.++.+...+.......-..+ ............ ..+
T Consensus 380 ~~~A~~~~k~aA~~g~-----~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGN-----PSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred HHHHHHHHHHHHHccC-----hhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 8999999999999873 34555555555432 677666665555444322211 111111111111 123
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHL----GANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~kl----GdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
...+...+.++.. ..+..+...||.+|..- .+++.|...|.+|.... +.+.+++|.++.
T Consensus 455 ~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e 517 (552)
T KOG1550|consen 455 LERAFSLYSRAAA--QGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHE 517 (552)
T ss_pred hhHHHHHHHHHHh--ccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHh
Confidence 4555555555543 45667777777777654 34778888888877766 667777777664
No 237
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.75 E-value=0.0015 Score=51.62 Aligned_cols=30 Identities=53% Similarity=1.000 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHhhcccCCCHHHHHHHHHHH
Q psy8682 828 QVDRARSIYERALDVDHRNITLWLKYTELE 857 (1956)
Q Consensus 828 d~ErARsIfERALs~~Pk~~dLWl~YadfE 857 (1956)
+.+++|.+|++++...|.+.++|+.|++||
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e 31 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEFE 31 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHHH
Confidence 445555555555555555555555555554
No 238
>KOG2471|consensus
Probab=96.75 E-value=0.0076 Score=74.63 Aligned_cols=220 Identities=15% Similarity=0.119 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----C-HHHHHHHHHHHHHcCChHHHHHHHHHHHH---hC---C--CC
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPD----N-AEVWLSLGISLAENEQDPQAIAALSKCLS---IE---P--KN 1672 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPd----n-aeAl~~LA~ay~~lGdyeEALe~yeKALe---Ld---P--dn 1672 (1956)
-..++.|.+++....+..|+.........-.. . +..-...-..+....+-++|+.++.-.-+ .. + ++
T Consensus 101 ~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~ 180 (696)
T KOG2471|consen 101 VMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNH 180 (696)
T ss_pred HHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Confidence 36778888888888888888877666543211 1 11223334445555666666665543221 10 0 00
Q ss_pred H-------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHH
Q psy8682 1673 L-------------------------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN 1727 (1956)
Q Consensus 1673 a-------------------------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~ 1727 (1956)
. .+.......|....+...+..-.+.++.+ . .+.+.
T Consensus 181 ~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~----a---------------~~s~~ 241 (696)
T KOG2471|consen 181 IPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMNI----A---------------QDSSM 241 (696)
T ss_pred cchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhhh----c---------------CCCcH
Confidence 0 11222233344444444444444444443 1 12344
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHH-HHhCCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-h--------
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNA-ARQCPSQS-----IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ-V-------- 1792 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekA-Lel~P~n~-----~~a~a~~~LG~ly~~lGdyeEAie~fekALe-l-------- 1792 (1956)
+....+..++..|++.+|.+.+... +...|... .....++++|.+++.+|.|.-+..+|.+|++ .
T Consensus 242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 5566788899999999999987665 22223210 1234578999999999999999999999996 1
Q ss_pred CC---------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1793 RP---------DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1793 ~P---------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.| ...++.++.|..|...|++-.|.++|.++......++..|..||.|+...
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 11 24578999999999999999999999999999999999999999998753
No 239
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.69 E-value=0.1 Score=64.86 Aligned_cols=174 Identities=14% Similarity=0.107 Sum_probs=118.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---cCChHHHHHHHHHH-HHhCCCCHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQ----EPDNAEVWLSLGISLAE---NEQDPQAIAALSKC-LSIEPKNLEA 1675 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALel----dPdnaeAl~~LA~ay~~---lGdyeEALe~yeKA-LeLdPdnaeA 1675 (1956)
+++...++-..|....+|+.-+.+.+.+-.+ -++...+.+.+|.++.+ .|+.++|+..+..+ ....+.+++.
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 5668888888999999999999999988766 45567788899999999 99999999999994 4556788899
Q ss_pred HHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1676 LMAISICFTNE---------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1676 l~~LA~aY~~l---------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
+..+|.+|... ...++|+..|.++.+. +|+ +.. -.|++.++...|...+..
T Consensus 220 ~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~----~~~---~Y~-------------GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 220 LGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI----EPD---YYS-------------GINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC----Ccc---ccc-------------hHHHHHHHHHcCCcccch
Confidence 99999988653 3478999999999998 665 222 234455555555433222
Q ss_pred HHHHHHH--------HhC-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1747 SLYLNAA--------RQC-PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1747 e~LekAL--------el~-P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
.-+++.. +.. -+.......+..++.+....|++++|++++++++++.|...
T Consensus 280 ~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 280 EELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2111111 110 00011234445556666667777777777777777665543
No 240
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=96.67 E-value=0.013 Score=62.58 Aligned_cols=105 Identities=21% Similarity=0.421 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhhc---CCCHHHHHHHHHHHHH---cC-CHHHHHHHHHHhhc---------ccCCCHHHHHHHHHHHHHc
Q psy8682 797 RKRKAFEDNIRKN---RMVISNWIKYAQWEES---QK-QVDRARSIYERALD---------VDHRNITLWLKYTELEMRN 860 (1956)
Q Consensus 797 RAR~lyEraL~~~---~~s~~lWlkYAqfE~~---~G-d~ErARsIfERALs---------~~Pk~~dLWl~YadfE~k~ 860 (1956)
..|+.||..|... ..-..+|.+|++|-.. .| .-..-..++||+++ .+|+..+||+.|+++-
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g~~~s~L~~lLerc~~~f~~~~~YknD~RyLkiWi~ya~~~--- 79 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQGGKESGLLTLLERCIRYFEDDERYKNDPRYLKIWLKYADNC--- 79 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHHHhhhhhhhcCCHHHHHHHHHHHHhc---
Confidence 3467788887432 2336899999999653 23 44556789999998 3566689999999983
Q ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q psy8682 861 RQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRD 907 (1956)
Q Consensus 861 gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERA 907 (1956)
++ .+.+|....+. --+.+.+|..|+.+.+..|+...|..||+++
T Consensus 80 ~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~G 125 (125)
T smart00777 80 DE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQLG 125 (125)
T ss_pred CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHcc
Confidence 33 58888887763 2334889999999999999999999999863
No 241
>KOG0545|consensus
Probab=96.66 E-value=0.0086 Score=69.22 Aligned_cols=66 Identities=17% Similarity=0.162 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.++.+++.|+...|+|-++++.....+...|.+..+++..|.+....=+..+|...|.++|+++|.
T Consensus 231 pLllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 231 PLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 455666667777777777777777777777777777777777776666777777777777777766
No 242
>KOG2610|consensus
Probab=96.66 E-value=0.06 Score=64.71 Aligned_cols=169 Identities=11% Similarity=-0.044 Sum_probs=128.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-C
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-C 1756 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-~ 1756 (1956)
.-+.+....|++.+|....++.++. .|. ..-+...--.++..+|+...-...+++.+.. +
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d----~Pt---------------Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn 168 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDD----YPT---------------DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWN 168 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHh----Cch---------------hhhhhhhhhhHHHhccchhhhhhHHHHhccccC
Confidence 4455677889999999999999988 666 1122333346778888888888889888876 5
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC----cHH
Q psy8682 1757 PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG----FVR 1832 (1956)
Q Consensus 1757 P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd----nae 1832 (1956)
++-+....+.-.++..+...|-|++|.+..++++++++.+..+...++.++...|++.++.+...+.-..-.. ...
T Consensus 169 ~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasH 248 (491)
T KOG2610|consen 169 ADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASH 248 (491)
T ss_pred CCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhh
Confidence 5542234455567777889999999999999999999999999999999999999999999988775332111 112
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH--HhcCCCh
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTAL--NQQAATH 1865 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekAL--eLdPdn~ 1865 (1956)
-|..-|.++..-+.|+.|++.|++-+ ++..+++
T Consensus 249 NyWH~Al~~iE~aeye~aleIyD~ei~k~l~k~Da 283 (491)
T KOG2610|consen 249 NYWHTALFHIEGAEYEKALEIYDREIWKRLEKDDA 283 (491)
T ss_pred hhHHHHHhhhcccchhHHHHHHHHHHHHHhhccch
Confidence 35667888889999999999998765 3444444
No 243
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.64 E-value=0.002 Score=52.60 Aligned_cols=30 Identities=33% Similarity=0.736 Sum_probs=21.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 862 QVNHARNLWDRAVTILPRANQFWYKYTYMEE 892 (1956)
Q Consensus 862 nierARsLFERAL~~~Pks~~LW~kYidfE~ 892 (1956)
++++||.||||.+...|.. +.|++|++||+
T Consensus 2 E~dRAR~IyeR~v~~hp~~-k~WikyAkFEe 31 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPEV-KNWIKYAKFEE 31 (32)
T ss_pred hHHHHHHHHHHHHHhCCCc-hHHHHHHHhhc
Confidence 4677777777777777664 77777777775
No 244
>KOG0985|consensus
Probab=96.57 E-value=0.18 Score=67.21 Aligned_cols=234 Identities=14% Similarity=0.080 Sum_probs=140.7
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
+++|+++...-. .+..|-.+|.+.++.|...+|++.|-+| +++..|.....+..+.|+|++-+.++..|-+..
T Consensus 1091 ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~ 1163 (1666)
T KOG0985|consen 1091 LDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKV 1163 (1666)
T ss_pred HHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 455555543221 3447777777777777777777777553 556667777777777777777777776665543
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
.+ +.+-..|..+|.+.++..+-.+.+ . .|+ .. -....|+-++..+.|+.|.-+|
T Consensus 1164 ~E-~~id~eLi~AyAkt~rl~elE~fi----~-----gpN---~A-------------~i~~vGdrcf~~~~y~aAkl~y 1217 (1666)
T KOG0985|consen 1164 RE-PYIDSELIFAYAKTNRLTELEEFI----A-----GPN---VA-------------NIQQVGDRCFEEKMYEAAKLLY 1217 (1666)
T ss_pred cC-ccchHHHHHHHHHhchHHHHHHHh----c-----CCC---ch-------------hHHHHhHHHhhhhhhHHHHHHH
Confidence 21 112233444455555555443332 1 232 11 1234567777888888887776
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
... .-+..|+..+..+|+|..|....++| ++...|-..+.+....+.+.-|.-+=-..+ -
T Consensus 1218 ~~v-----------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~ii----v 1277 (1666)
T KOG0985|consen 1218 SNV-----------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNII----V 1277 (1666)
T ss_pred HHh-----------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEE----E
Confidence 543 23677888888888888888887775 445566666666666555554432211100 1
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.++-+-.|...|...|-+++-+..++.++.+...+-..+..+|.+|.
T Consensus 1278 hadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYs 1324 (1666)
T KOG0985|consen 1278 HADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYS 1324 (1666)
T ss_pred ehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHH
Confidence 23345556666777777777777777777777666666666666663
No 245
>KOG3616|consensus
Probab=96.56 E-value=0.12 Score=66.22 Aligned_cols=58 Identities=12% Similarity=0.151 Sum_probs=32.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHH------HHHhC----CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSK------CLSIE----PKNLE-ALMAISICFTNEACLHDALDTLKDK 1699 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeK------ALeLd----Pdnae-Al~~LA~aY~~lGdydEALe~leKA 1699 (1956)
|-.-|.+|.+..++++|+++|++ ++++. |.... .-..-|.-+...|+++.|+..|-++
T Consensus 664 ydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea 732 (1636)
T KOG3616|consen 664 YDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEA 732 (1636)
T ss_pred HHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh
Confidence 34445555566666677666653 33332 32221 1223466667778888887766554
No 246
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=96.55 E-value=0.0034 Score=49.64 Aligned_cols=32 Identities=31% Similarity=0.786 Sum_probs=29.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 861 RQVNHARNLWDRAVTILPRANQFWYKYTYMEE 892 (1956)
Q Consensus 861 gnierARsLFERAL~~~Pks~~LW~kYidfE~ 892 (1956)
|++++||.+|++++..+|....+|..|++||+
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~ 32 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEFEE 32 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence 56889999999999999999999999999986
No 247
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.54 E-value=0.0047 Score=53.55 Aligned_cols=42 Identities=26% Similarity=0.233 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy8682 732 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLF 773 (1956)
Q Consensus 732 ~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~yl 773 (1956)
|+++..|+..|...|++++|+++|+++++.+|++...|..+.
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 578999999999999999999999999999999999998876
No 248
>KOG0376|consensus
Probab=96.52 E-value=0.0035 Score=78.23 Aligned_cols=110 Identities=12% Similarity=0.083 Sum_probs=100.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q 1809 (1956)
-+-+......+.++.|+..|.+|++++|+. +..+.+.+.++.+.+++..|+..+.+|++.+|....+|+..|.+...
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~ldpnc---a~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIELDPNC---AIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA 84 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhcCCcc---eeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh
Confidence 345677888999999999999999999998 88888899999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
++++.+|+..|++...+.|+.+.+...+..|-.
T Consensus 85 l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 999999999999999999999988877766643
No 249
>KOG0551|consensus
Probab=96.50 E-value=0.018 Score=69.09 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=92.9
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.+..+..-|+-|++..+|..|...|.++++..-.+ .+.+..|.++|.+....|+|..|+..+.+++.++|.+..+++.
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R 158 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhh
Confidence 345556677899999999999999999999876544 3567789999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
-|.|+..+.++++|..+++..++++.+
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 999999999999999999988776544
No 250
>KOG0376|consensus
Probab=96.49 E-value=0.0024 Score=79.59 Aligned_cols=108 Identities=15% Similarity=0.155 Sum_probs=99.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
.-.-+.-++.-+.|+.|+..|.+|++++|+.+..+.+.+.++.+.+++..|+..+.+|++++|....+|+..|.+...++
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~ 86 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALG 86 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHH
Confidence 33446667788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1846 ANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
++.+|+..|++...+.|+.+.+...+-.
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~E 114 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDE 114 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHH
Confidence 9999999999999999999987655543
No 251
>KOG0545|consensus
Probab=96.47 E-value=0.032 Score=64.74 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=91.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------EPDN----------AEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALel--------dPdn----------aeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
...++...|+-+++.|+|.+|...|+.|+.. .|.. ...+.+++.|+...|+|-++++.....
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~sei 256 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEI 256 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999742 3443 346788999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
+..+|.+..+|+..|.+....=+.++|...+.+++++ +|.
T Consensus 257 L~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l----dps 296 (329)
T KOG0545|consen 257 LRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL----DPS 296 (329)
T ss_pred HhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc----Chh
Confidence 9999999999999999999999999999999999999 887
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.47 E-value=0.0047 Score=53.56 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=9.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
.+|..+|++++|++.|+++++.+|+++
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 333333333333333333333333333
No 253
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.46 E-value=0.31 Score=59.22 Aligned_cols=115 Identities=13% Similarity=0.100 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh-C--C-------
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP----DDSRLWNRLGASLANGNRPEEAVEAYHTALQL-S--P------- 1828 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~P----dnaeA~~nLG~ay~qlGryeEAie~yeKALeL-~--P------- 1828 (1956)
...+..++.+..+.|.++.|...+.++....+ ..+.+....+.++...|+..+|+..++..+.. . +
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 67899999999999999999999999988652 25678888899999999999999999888871 1 0
Q ss_pred ------------------C------cHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1829 ------------------G------FVRARYNLGITCVHL------GANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1829 ------------------d------naeA~~~LA~ay~kl------GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
. ...++..+|...... +..++++..|.++++++|+...+|+..|..+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~ 304 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDK 304 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 0 124566777777777 889999999999999999999999988876643
No 254
>KOG1550|consensus
Probab=96.46 E-value=0.2 Score=65.79 Aligned_cols=227 Identities=15% Similarity=0.100 Sum_probs=157.7
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----CChHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcC--
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN-----EQDPQAIAALSKCLSI-----EPKNLEALMAISICFTNEA-- 1687 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~l-----GdyeEALe~yeKALeL-----dPdnaeAl~~LA~aY~~lG-- 1687 (1956)
+...|..+++.+-+. .+..+.+.+|.+|..- .+.+.|+.+|+.+.+. ....+.+.+.+|.+|....
T Consensus 227 ~~~~a~~~~~~~a~~--g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL--GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 356788888887654 5678888888888754 6899999999999771 1124557889999998843
Q ss_pred ---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCC
Q psy8682 1688 ---CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE---IHQQVLSLYLNAARQCPSQSI 1761 (1956)
Q Consensus 1688 ---dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG---dyeEAle~LekALel~P~n~~ 1761 (1956)
++..|+.+|.++.+. ....+.+.+|.++.... ++..|.++|..|.+..-
T Consensus 305 ~~~d~~~A~~~~~~aA~~---------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~---- 359 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAEL---------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH---- 359 (552)
T ss_pred ccccHHHHHHHHHHHHhc---------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC----
Confidence 678899999999888 12335677888887655 67899999999987643
Q ss_pred CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-CChHHHHHHHHHHHhhCCCcHH----
Q psy8682 1762 DPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG-NRPEEAVEAYHTALQLSPGFVR---- 1832 (1956)
Q Consensus 1762 ~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql-GryeEAie~yeKALeL~Pdnae---- 1832 (1956)
..+.+.+|.+|.. ..+...|..+|.++.+.. .+.+...++..+... ++++.+.-.+....+..-....
T Consensus 360 -~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q~~a~ 436 (552)
T KOG1550|consen 360 -ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQSNAA 436 (552)
T ss_pred -hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHhhHHH
Confidence 5688999998853 247899999999999987 566666666665543 8888887777666654332221
Q ss_pred HHHHHHHHHHHc----CCHHHHHHHHHHHHHhcCCChhchhccccchhhh
Q psy8682 1833 ARYNLGITCVHL----GANTQAVEHFLTALNQQAATHDGLTPHGLEPRAV 1878 (1956)
Q Consensus 1833 A~~~LA~ay~kl----GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~l 1878 (1956)
............ .+...+...+.++.. ..++.+...+|.+|..-
T Consensus 437 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~a~~~lgd~y~~g 484 (552)
T KOG1550|consen 437 YLLDQSEEDLFSRGVISTLERAFSLYSRAAA--QGNADAILKLGDYYYYG 484 (552)
T ss_pred HHHHhccccccccccccchhHHHHHHHHHHh--ccCHHHHhhhcceeeec
Confidence 111111111111 245566666666544 35667888888888643
No 255
>KOG4507|consensus
Probab=96.45 E-value=0.076 Score=67.31 Aligned_cols=92 Identities=11% Similarity=0.008 Sum_probs=73.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAE--VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEAC 1688 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPdnae--Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd 1688 (1956)
.+.....+|+..+|..++..++-..|.... ++..+|.++.+.|...+|--.+..|+.-.|....-++.++.++..++.
T Consensus 219 as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 219 ASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFSADAAVILHAALDDADFFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred HHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccccchhheeehhccCCccccccceeHHHHHHHHhh
Confidence 334445578888999999888887766543 677888888889988888888888887777666668888888888888
Q ss_pred HHHHHHHHHHHHhc
Q psy8682 1689 LHDALDTLKDKIRP 1702 (1956)
Q Consensus 1689 ydEALe~leKALel 1702 (1956)
+......|..+.+.
T Consensus 299 ~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 299 YNHSVLCYDHALQA 312 (886)
T ss_pred hhhhhhhhhhhhcc
Confidence 88888888888887
No 256
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.45 E-value=0.41 Score=61.82 Aligned_cols=165 Identities=15% Similarity=0.047 Sum_probs=121.0
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHhCCC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS----SREIHQQVLSLYLNAARQCPS 1758 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~----~lGdyeEAle~LekALel~P~ 1758 (1956)
.--.|+-+.+++.+.++.+. ..-......+. .-.|+.....+. .....+.|.+++....+..|+
T Consensus 198 vGF~gdR~~GL~~L~~~~~~----~~i~~~la~L~--------LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~ 265 (468)
T PF10300_consen 198 VGFSGDRELGLRLLWEASKS----ENIRSPLAALV--------LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPN 265 (468)
T ss_pred cCcCCcHHHHHHHHHHHhcc----CCcchHHHHHH--------HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCC
Confidence 33458899999999988765 11100011110 111222221121 356788999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-HH
Q psy8682 1759 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-RA 1833 (1956)
Q Consensus 1759 n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-eA 1833 (1956)
. ...+...|+++...|+.++|++.|++++..... ....++.+|.++..+++|++|..+|.+..+.+.-.. -.
T Consensus 266 s---~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y 342 (468)
T PF10300_consen 266 S---ALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY 342 (468)
T ss_pred c---HHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence 8 888999999999999999999999998854332 335688999999999999999999999999766543 34
Q ss_pred HHHHHHHHHHcCCH-------HHHHHHHHHHHHhcC
Q psy8682 1834 RYNLGITCVHLGAN-------TQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1834 ~~~LA~ay~klGdy-------EEAie~yekALeLdP 1862 (1956)
.|..|.++..+|+. ++|.++|.++-.+..
T Consensus 343 ~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 343 AYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence 56778899999999 778788877766544
No 257
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=96.44 E-value=0.011 Score=63.16 Aligned_cols=111 Identities=14% Similarity=0.255 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHhhCC---CCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC---------CHHHH
Q psy8682 749 DKAVDCFRSALQVRP---DFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM---------VISNW 816 (1956)
Q Consensus 749 EkArelFerALkkfP---~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~---------s~~lW 816 (1956)
++.+..|+..+.... +--.+|.+|++.+....|. .+.. .....++|+|++.+.. ...+|
T Consensus 2 ~~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~--~~~~-------~~L~~lLer~~~~f~~~~~Y~nD~RylkiW 72 (126)
T PF08311_consen 2 EQQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPS--GGKQ-------SGLLELLERCIRKFKDDERYKNDERYLKIW 72 (126)
T ss_dssp HHHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTT--CCCC-------HHHHHHHHHHHHHHTTSGGGTT-HHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCC--CCch-------hHHHHHHHHHHHHHhhhHhhcCCHHHHHHH
Confidence 456777888877654 3368999999888744433 1111 1234577777765522 25799
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 817 IKYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAV 874 (1956)
Q Consensus 817 lkYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL 874 (1956)
++||++.. .++.||..+.+ ...+...+|..|+.+....|++++|..||++++
T Consensus 73 i~ya~~~~------~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 73 IKYADLSS------DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp HHHHTTBS------HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHcc------CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 99999743 88899998887 677889999999999999999999999999875
No 258
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.28 E-value=0.099 Score=67.28 Aligned_cols=167 Identities=13% Similarity=0.031 Sum_probs=120.0
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHH------HHHHHHHHH----HcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEV------WLSLGISLA----ENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekALeldPdn-aeA------l~~LA~ay~----~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
..+-...--.||-+.++..+.++.+...-. +-+ |+.....+. .....+.|.+.+....+..|+..-.++
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~ 271 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLF 271 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHH
Confidence 333333334689999999999987732111 111 111111111 234678899999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
..|+++...|+.++|++.+++++.. ... +.++. .-.++.+|.++..+.+|++|..++.+..+.+.
T Consensus 272 ~~gR~~~~~g~~~~Ai~~~~~a~~~----q~~---~~Ql~--------~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~ 336 (468)
T PF10300_consen 272 FEGRLERLKGNLEEAIESFERAIES----QSE---WKQLH--------HLCYFELAWCHMFQHDWEEAAEYFLRLLKESK 336 (468)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhccc----hhh---HHhHH--------HHHHHHHHHHHHHHchHHHHHHHHHHHHhccc
Confidence 9999999999999999999999865 333 44332 23477899999999999999999999988765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHh
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEY-------DKAVDCFRSALQV 1792 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdy-------eEAie~fekALel 1792 (1956)
-+ .+...+..|.++...|+. ++|.++|.++-..
T Consensus 337 WS--ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 337 WS--KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred cH--HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 43 244566778888888888 7777777766543
No 259
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=96.24 E-value=1.6 Score=58.22 Aligned_cols=298 Identities=13% Similarity=0.021 Sum_probs=190.4
Q ss_pred hhhhHHHHHhc--hhhHhHhhhhccCCCccHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCC--C----HHHHHHHHH
Q psy8682 1577 WFSDFSRNQRS--SVSMHEYTFAEDNPMQNETNAFALGQEKL-RQGDLPSAILYLEAAAKQEPD--N----AEVWLSLGI 1647 (1956)
Q Consensus 1577 WL~dYeeALs~--s~ydKAlqL~p~NP~~daeall~LG~ayl-k~GdydEAIe~fekALeldPd--n----aeAl~~LA~ 1647 (1956)
-+.+|.+.|.. .+++.+.+-.+-.|..++.+.+.+|.+++ ...+++.|..++++++.+... . ..+.+.++.
T Consensus 29 ~l~~Y~kLI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~ 108 (608)
T PF10345_consen 29 QLKQYYKLIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLAR 108 (608)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 34555554443 23666664333455668889999999998 678999999999999887643 2 234567788
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCC---CH-HHHHHH--HHHHHHcCCHHHHHHHHHHHHhcCCC-CCCCchhhhhhcCcc
Q psy8682 1648 SLAENEQDPQAIAALSKCLSIEPK---NL-EALMAI--SICFTNEACLHDALDTLKDKIRPGQE-SNPRPSAYKADALPS 1720 (1956)
Q Consensus 1648 ay~~lGdyeEALe~yeKALeLdPd---na-eAl~~L--A~aY~~lGdydEALe~leKALelg~e-~dPd~eay~~Ll~~~ 1720 (1956)
++.+.+... |+..++++++.... .. ...+.+ ...+...+++..|++.++........ .+|.
T Consensus 109 i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~----------- 176 (608)
T PF10345_consen 109 IYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA----------- 176 (608)
T ss_pred HHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH-----------
Confidence 888888887 99999999987544 11 122222 22233337999999999999887110 1111
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCC-CCCHHHHHHHHH--HHHHcCCHHHHHHHHHHH--
Q psy8682 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC------PSQ-SIDPDVQNGLGV--LFNLSDEYDKAVDCFRSA-- 1789 (1956)
Q Consensus 1721 Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~------P~n-~~~a~a~~~LG~--ly~~lGdyeEAie~fekA-- 1789 (1956)
...-+....+.+....+..+++++.++++.... +.. .....++..+-. ++...|+++.+...+++.
T Consensus 177 ---~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 177 ---VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred ---HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122233445667777888888888888774321 211 011233433333 445778877776665543
Q ss_pred -HHh---CC-------C---------------C--------------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1790 -LQV---RP-------D---------------D--------------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1790 -Lel---~P-------d---------------n--------------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+.. .+ + . .-+|..-|......+..+.|.+++.++++.-.+
T Consensus 254 ~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~ 333 (608)
T PF10345_consen 254 FLDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEK 333 (608)
T ss_pred HHHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHH
Confidence 211 11 0 0 123444466777888888999999998863111
Q ss_pred c--------------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC---------Chhchhccccc
Q psy8682 1830 F--------------------------VRARYNLGITCVHLGANTQAVEHFLTALNQQAA---------THDGLTPHGLE 1874 (1956)
Q Consensus 1830 n--------------------------aeA~~~LA~ay~klGdyEEAie~yekALeLdPd---------n~dA~~~LG~l 1874 (1956)
. ....+.++.+..-++++..|......+...... .+..++..|..
T Consensus 334 ~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~ 413 (608)
T PF10345_consen 334 LKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLY 413 (608)
T ss_pred hhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHH
Confidence 0 113456777788899999999999888766432 35578888999
Q ss_pred hhhhcccHHHHHHHH
Q psy8682 1875 PRAVKEMSDSIWYSL 1889 (1956)
Q Consensus 1875 ~~~lg~~seAIws~L 1889 (1956)
+...|+.+.|...+.
T Consensus 414 ~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 414 YQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHcCCHHHHHHHHh
Confidence 999999988875544
No 260
>KOG0551|consensus
Probab=96.20 E-value=0.097 Score=63.23 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=95.2
Q ss_pred ccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1598 p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
.+.|...++.+-..|.-|++..+|..|+.+|.+.|+..-.+ +..|.+.|.+....|+|..|+.-..+++.++|.+.
T Consensus 74 E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 74 EGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL 153 (390)
T ss_pred cCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh
Confidence 34555578888899999999999999999999999875443 55788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
.+++.-|.+++.+.++++|...++..+.+
T Consensus 154 Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 154 KAYIRGAKCLLELERFAEAVNWCEEGLQI 182 (390)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999998877
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.17 E-value=0.69 Score=57.84 Aligned_cols=177 Identities=14% Similarity=0.160 Sum_probs=125.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh---cCCHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS---REIHQQVLSL 1748 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~---lGdyeEAle~ 1748 (1956)
.++...++-..|....+|+.-+...+..-.+ |. .. ...........|.++.+ .|+.++|+..
T Consensus 140 s~div~~lllSyRdiqdydamI~Lve~l~~~-----p~---~~-------~~~~~~i~~~yafALnRrn~~gdre~Al~i 204 (374)
T PF13281_consen 140 SPDIVINLLLSYRDIQDYDAMIKLVETLEAL-----PT---CD-------VANQHNIKFQYAFALNRRNKPGDREKALQI 204 (374)
T ss_pred ChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-----Cc---cc-------hhcchHHHHHHHHHHhhcccCCCHHHHHHH
Confidence 3456678888899999999999888876655 33 11 12334445667888887 9999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH
Q psy8682 1749 YLNAARQCPSQSIDPDVQNGLGVLFNLS---------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819 (1956)
Q Consensus 1749 LekALel~P~n~~~a~a~~~LG~ly~~l---------GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ 1819 (1956)
+..++..... ..++++..+|.+|..+ ...++|+..|.++.+++|+ ...-.|++.++...|.-.+...-
T Consensus 205 l~~~l~~~~~--~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-~Y~GIN~AtLL~~~g~~~~~~~e 281 (374)
T PF13281_consen 205 LLPVLESDEN--PDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-YYSGINAATLLMLAGHDFETSEE 281 (374)
T ss_pred HHHHHhccCC--CChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-ccchHHHHHHHHHcCCcccchHH
Confidence 9996554432 2489999999998532 3478999999999999964 44455677777777764443332
Q ss_pred HHHHH-hh-----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1820 YHTAL-QL-----------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1820 yeKAL-eL-----------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.++.. .+ .-.+...+-.++.+..-.|++++|+.++++++++.|. +|+
T Consensus 282 l~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~---~W~ 340 (374)
T PF13281_consen 282 LRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP---AWE 340 (374)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc---chh
Confidence 22222 11 1223445667788888999999999999999999877 775
No 262
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.10 E-value=0.67 Score=62.15 Aligned_cols=249 Identities=13% Similarity=0.020 Sum_probs=159.1
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP-----DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP-----dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
..++|..-+...-..|..+...++..--... ++.-| .++......+.......++.+|..+..++...-+.
T Consensus 372 aA~d~~~aa~lle~~~~~L~~~~~lsll~~~----~~~lP~~~l~~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~ 447 (894)
T COG2909 372 AAGDPEMAADLLEQLEWQLFNGSELSLLLAW----LKALPAELLASTPRLVLLQAWLLASQHRLAEAETLIARLEHFLKA 447 (894)
T ss_pred hCCCHHHHHHHHHhhhhhhhcccchHHHHHH----HHhCCHHHHhhCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCc
Confidence 3455654555555666667766665443333 33333 34566677788888899999999888887665433
Q ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCH
Q psy8682 1672 ---------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIH 1742 (1956)
Q Consensus 1672 ---------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdy 1742 (1956)
........|.+....|++++|.+..+.++.. -|....+.. ..+...+|.+..-.|++
T Consensus 448 ~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~----L~~~~~~~r----------~~~~sv~~~a~~~~G~~ 513 (894)
T COG2909 448 PMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQ----LPEAAYRSR----------IVALSVLGEAAHIRGEL 513 (894)
T ss_pred CcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----cccccchhh----------hhhhhhhhHHHHHhchH
Confidence 1123344577778889999999999999988 555222222 23566788999999999
Q ss_pred HHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHH----HhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1743 QQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEY--DKAVDCFRSAL----QVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1743 eEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdy--eEAie~fekAL----el~PdnaeA~~nLG~ay~qlGry 1813 (1956)
++|..+...+.+..... .....+.+..+.++..+|+. .+....|...- ...|.+.......+.++...-++
T Consensus 514 ~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~ 593 (894)
T COG2909 514 TQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRL 593 (894)
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 99999999888774332 12344556667888888843 33333333322 22344444444444444433347
Q ss_pred HHHHHHHHHHHhhC----CCc--HH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1814 EEAVEAYHTALQLS----PGF--VR-ARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1814 eEAie~yeKALeL~----Pdn--ae-A~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+.+.....+.+++. |.. .. +++.|+.++...|++++|...+.+...+--+
T Consensus 594 ~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 594 DLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 77777766666542 222 22 3358899999999999999998888776544
No 263
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.06 E-value=1.6 Score=52.16 Aligned_cols=168 Identities=21% Similarity=0.191 Sum_probs=115.5
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN----EQDPQAIAALSKCLSIEPKNLEALMAISICFTN---- 1685 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l----GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~---- 1685 (1956)
.....+++..|...+..+-.. .++.+...++.+|... .+..+|...|+.+. ....+.+.+.||.+|..
T Consensus 50 ~~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a--~~g~~~a~~~lg~~~~~G~gv 125 (292)
T COG0790 50 GSAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAA--ADGLAEALFNLGLMYANGRGV 125 (292)
T ss_pred cccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHh--hcccHHHHHhHHHHHhcCCCc
Confidence 334566788888888877652 3346777788777754 46788999888544 45667788889998877
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHhCCC
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE-------IHQQVLSLYLNAARQCPS 1758 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG-------dyeEAle~LekALel~P~ 1758 (1956)
..++.+|..+|.++.+.+ ++. ...+.+.++..|..-. +...|...|.++....
T Consensus 126 ~~d~~~A~~~~~~Aa~~g---~~~---------------a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-- 185 (292)
T COG0790 126 PLDLVKALKYYEKAAKLG---NVE---------------AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-- 185 (292)
T ss_pred ccCHHHHHHHHHHHHHcC---Chh---------------HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--
Confidence 458899999999998871 111 0122445555555431 2346888888887765
Q ss_pred CCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1759 QSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1759 n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
+ +.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...|
T Consensus 186 ~---~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 186 N---PDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred C---HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 3 5678888877754 3478889999998888766 77788888 666555
No 264
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=96.05 E-value=0.0049 Score=50.48 Aligned_cols=28 Identities=39% Similarity=0.719 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHH
Q psy8682 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEE 824 (1956)
Q Consensus 796 ~RAR~lyEraL~~~~~s~~lWlkYAqfE~ 824 (1956)
+|||.+|||.|.. ..+++.|++||+||+
T Consensus 4 dRAR~IyeR~v~~-hp~~k~WikyAkFEe 31 (32)
T PF02184_consen 4 DRARSIYERFVLV-HPEVKNWIKYAKFEE 31 (32)
T ss_pred HHHHHHHHHHHHh-CCCchHHHHHHHhhc
Confidence 4666666666654 345566666666653
No 265
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.04 E-value=0.11 Score=55.79 Aligned_cols=96 Identities=21% Similarity=0.212 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----------------------AEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn----------------------aeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
.+...|......|+...++..+++++.+.... ..+...++..+...|++++|+..+++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 34445666677788888888888888764321 23566778888899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1665 ALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++..+|.+..++..+..+|...|+..+|+..|+++...
T Consensus 88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998766
No 266
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.03 E-value=0.1 Score=55.95 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=73.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY-DKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy-eEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
...|......++...++..+.+++.+.... .-+.... ..+ ......++.. ...+...++..+.
T Consensus 10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~-~l~~~~~---------~~W~~~~r~~l~~~------~~~~~~~l~~~~~ 73 (146)
T PF03704_consen 10 VREARAAARAGDPEEAIELLEEALALYRGD-FLPDLDD---------EEWVEPERERLREL------YLDALERLAEALL 73 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHTT--SS-TTGGGTT---------STTHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhCCC-CCCCCCc---------cHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 334555666778888888888888776654 1110000 111 1111122221 1245667788888
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
..|++++|+..+++++..+|.+-.++..+..+|...|+..+|+..|++..+.
T Consensus 74 ~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 74 EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR 125 (146)
T ss_dssp HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999988887554
No 267
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.93 E-value=0.11 Score=62.16 Aligned_cols=132 Identities=17% Similarity=0.142 Sum_probs=97.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLA 1808 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~ 1808 (1956)
+.-+.-....|++.+|...|..++...|++ ..+...++.+|...|+.+.|...+...=...... .......-..+.
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~---~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPEN---SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCccc---chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 344566778999999999999999999998 8999999999999999999988876632221111 111111112333
Q ss_pred HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+.....+. ..+++.+..+|++..+.+.+|..+...|++++|.+++-..++.+....
T Consensus 215 qaa~~~~~-~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 215 QAAATPEI-QDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHhcCCCH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 33333322 345566778999999999999999999999999999999998876633
No 268
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.25 Score=59.41 Aligned_cols=157 Identities=23% Similarity=0.247 Sum_probs=102.7
Q ss_pred eeccCCCCCCcchhhhhhcchhhhhhhHHH-HHHhhcchh-hhhhchhhhhhccccccCCCCCCCCcccccccccccCCC
Q psy8682 1427 VFDLRPRYGPILFCVSFQWINEVKFITLCL-IIEVNQHGI-HICGRQSYAERNQCFCFGPGKAQTGPLFSNGVASINQQP 1504 (1956)
Q Consensus 1427 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~ae~~~c~~~~p~~a~~~~lf~~a~aslgq~~ 1504 (1956)
.+-.+++-+||++=|---|-..-+-+||-| .+.--.+|- .++..++..+....-.+|..--|+.-.|..|...
T Consensus 36 ~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV~af~dGqpV----- 110 (304)
T COG3118 36 EVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTVYAFKDGQPV----- 110 (304)
T ss_pred HHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeEEEeeCCcCc-----
Confidence 344567778999888888888888888877 444444443 4666677777766666665443555555444431
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
.. |.|.. +. +.+.+ | +
T Consensus 111 -dg-----------------F~G~q-------------------Pe---sqlr~-~-----------------l------ 126 (304)
T COG3118 111 -DG-----------------FQGAQ-------------------PE---SQLRQ-F-----------------L------ 126 (304)
T ss_pred -cc-----------------cCCCC-------------------cH---HHHHH-H-----------------H------
Confidence 00 00000 00 01110 1 0
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
++.+ +. ..+..+..+......|++.+|...|..+++..|++..+...++.+|...|+.+.|...+..
T Consensus 127 ------d~~~------~~-~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~ 193 (304)
T COG3118 127 ------DKVL------PA-EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAA 193 (304)
T ss_pred ------HHhc------Ch-HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHh
Confidence 1111 11 2345667788888999999999999999999999999999999999999999999887765
Q ss_pred H
Q psy8682 1665 C 1665 (1956)
Q Consensus 1665 A 1665 (1956)
.
T Consensus 194 l 194 (304)
T COG3118 194 L 194 (304)
T ss_pred C
Confidence 3
No 269
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.84 E-value=1.2 Score=53.17 Aligned_cols=185 Identities=18% Similarity=0.129 Sum_probs=132.6
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE----ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l----GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
....+.+..|...+.++-.. ....+...++.+|..- .+..+|..+|..+... .
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~---------------------g 107 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD---------------------G 107 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc---------------------c
Confidence 34567788888888887662 2336777888877653 4578899988866655 2
Q ss_pred hHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHhC
Q psy8682 1725 LANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD-------EYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG-------dyeEAie~fekALel~ 1793 (1956)
...+.+.+|.+|.. ..++.+|..+|.++.+..-.. ...+.+.+|.+|..-. +...|...|.++-...
T Consensus 108 ~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~--a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 108 LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVE--AALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc
Confidence 34456778888876 459999999999999875433 0233778888876531 2337888888887765
Q ss_pred CCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---------------CHHHHHHHH
Q psy8682 1794 PDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG---------------ANTQAVEHF 1854 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG---------------dyEEAie~y 1854 (1956)
++.+...+|.+|.. ..++.+|..+|.++.+... ..+.+.++ ++...| +...|...+
T Consensus 186 --~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~ 260 (292)
T COG0790 186 --NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWL 260 (292)
T ss_pred --CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHH
Confidence 78889999988865 3478999999999998766 78888888 776666 555566666
Q ss_pred HHHHHhcCC
Q psy8682 1855 LTALNQQAA 1863 (1956)
Q Consensus 1855 ekALeLdPd 1863 (1956)
..+....+.
T Consensus 261 ~~~~~~~~~ 269 (292)
T COG0790 261 QKACELGFD 269 (292)
T ss_pred HHHHHcCCh
Confidence 655554443
No 270
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.80 E-value=1.1 Score=60.19 Aligned_cols=235 Identities=14% Similarity=-0.045 Sum_probs=153.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPD---------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL--- 1673 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPd---------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna--- 1673 (1956)
...+..|..+....++++|..++.++...-+. .+...-..|.+....|+.++|+++.+.++..-|.+.
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~ 495 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRS 495 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchh
Confidence 37778899999999999999999988765433 134556678888899999999999999999876543
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH--HHHHHH
Q psy8682 1674 --EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ--QVLSLY 1749 (1956)
Q Consensus 1674 --eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye--EAle~L 1749 (1956)
.++..+|.+..-.|++++|..+..++.+. ... |.... -...+....+.++..+|+.. +....+
T Consensus 496 r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~----a~~---~~~~~------l~~~~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 496 RIVALSVLGEAAHIRGELTQALALMQQAEQM----ARQ---HDVYH------LALWSLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred hhhhhhhhhHHHHHhchHHHHHHHHHHHHHH----HHH---cccHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 46778899999999999999999998877 222 11111 23345566788888888333 333333
Q ss_pred HHH----HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CH-HHHHHHHHHHHHCCChHHHHH
Q psy8682 1750 LNA----ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PD--DS-RLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1750 ekA----Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~----Pd--na-eA~~nLG~ay~qlGryeEAie 1818 (1956)
... +...|.+ .......+.++...-+++.+.......++.. |. .. .++..|+.++...|++++|..
T Consensus 563 ~~~~~q~l~q~~~~---~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~ 639 (894)
T COG2909 563 NLIREQHLEQKPRH---EFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALA 639 (894)
T ss_pred HHHHHHHhhhcccc---hhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 322 2223333 2222233333333333666666666666543 22 22 233588999999999999999
Q ss_pred HHHHHHhhCCCc-----HHH--HHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1819 AYHTALQLSPGF-----VRA--RYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1819 ~yeKALeL~Pdn-----aeA--~~~LA~ay~klGdyEEAie~yek 1856 (1956)
.+.+...+..+. ..+ +.-........|++++|.....+
T Consensus 640 ~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 640 QLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 998887653222 112 22223334567888888777666
No 271
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.77 E-value=0.0089 Score=49.51 Aligned_cols=32 Identities=28% Similarity=0.439 Sum_probs=17.2
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
|++||+++|+++.+|++||.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 44555555555555555555555555555553
No 272
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.70 E-value=0.016 Score=47.01 Aligned_cols=32 Identities=34% Similarity=0.499 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 34555555555556666666666666555554
No 273
>KOG2300|consensus
Probab=95.70 E-value=0.82 Score=57.73 Aligned_cols=196 Identities=12% Similarity=0.087 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC---CC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCch
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIE---PK-------NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS 1711 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLd---Pd-------naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~e 1711 (1956)
+-.+..+-.-.|++.+|++....+.+.. |. .+...+.+|.....-+.++.|...|..+++. ...
T Consensus 326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~----t~~-- 399 (629)
T KOG2300|consen 326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKL----TES-- 399 (629)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHh----hhH--
Confidence 4455666677899999998888777653 43 2334566777667778899999999999887 211
Q ss_pred hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------CCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1712 AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-------SIDPDVQNGLGVLFNLSDEYDKAVD 1784 (1956)
Q Consensus 1712 ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-------~~~a~a~~~LG~ly~~lGdyeEAie 1784 (1956)
..-.+....++|..|...++-+.-.+.++ .+.|.+ .....+++..|...+.++++.+|..
T Consensus 400 ----------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~ 466 (629)
T KOG2300|consen 400 ----------IDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKR 466 (629)
T ss_pred ----------HHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHH
Confidence 11234456778999998777554444333 344543 1234567777888889999999999
Q ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcHHH---HHHHHHHHHHcCC--HHHH
Q psy8682 1785 CFRSALQVRPD------DSRLWNRLGASLANGNRPEEAVEAYHTALQLS---PGFVRA---RYNLGITCVHLGA--NTQA 1850 (1956)
Q Consensus 1785 ~fekALel~Pd------naeA~~nLG~ay~qlGryeEAie~yeKALeL~---PdnaeA---~~~LA~ay~klGd--yEEA 1850 (1956)
.+.+.+++... .+-.+..||.+....|+..++....+-++++. |+.+.. ...+-.+|...|+ .+.+
T Consensus 467 ~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e 546 (629)
T KOG2300|consen 467 FLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEME 546 (629)
T ss_pred HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHH
Confidence 99999987621 12345667888889999999999888888764 443332 2344566777777 4555
Q ss_pred HHHHHH
Q psy8682 1851 VEHFLT 1856 (1956)
Q Consensus 1851 ie~yek 1856 (1956)
.+.|.+
T Consensus 547 ~e~~~~ 552 (629)
T KOG2300|consen 547 NEAFRK 552 (629)
T ss_pred HHHHHH
Confidence 554443
No 274
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.69 E-value=0.021 Score=45.90 Aligned_cols=33 Identities=33% Similarity=0.459 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
.+++.+|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 456666666666666666666666666666653
No 275
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.63 E-value=0.011 Score=49.03 Aligned_cols=32 Identities=25% Similarity=0.530 Sum_probs=24.0
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
|+++++++|+++.+|+++|.+|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 66777777777777777777777777777775
No 276
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.54 E-value=0.022 Score=46.22 Aligned_cols=32 Identities=34% Similarity=0.485 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
.+|+++|.++..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 45556666666666666666666666666554
No 277
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.06 E-value=0.045 Score=44.00 Aligned_cols=31 Identities=32% Similarity=0.522 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPD 1637 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPd 1637 (1956)
.++.+|.+++..|++++|+.+|+++++++|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4445555555555555555555555555544
No 278
>KOG1308|consensus
Probab=95.02 E-value=0.027 Score=68.06 Aligned_cols=94 Identities=16% Similarity=0.105 Sum_probs=73.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
+.-.+..|.+++|++.|..+++++|.. +..+...+.++.++++...|+..|..++.++|+...-|-..|.+...+|+
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~~---a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~ 197 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPPL---AILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN 197 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCch---hhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence 444556777888888888888888877 77777888888888888888888888888888887777778888888888
Q ss_pred hHHHHHHHHHHHhhCCC
Q psy8682 1813 PEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1813 yeEAie~yeKALeL~Pd 1829 (1956)
+++|...+..+.+++-+
T Consensus 198 ~e~aa~dl~~a~kld~d 214 (377)
T KOG1308|consen 198 WEEAAHDLALACKLDYD 214 (377)
T ss_pred hHHHHHHHHHHHhcccc
Confidence 88888888888776543
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.02 E-value=5.8 Score=47.87 Aligned_cols=222 Identities=17% Similarity=0.120 Sum_probs=129.4
Q ss_pred HHHcCChHHHHHHHHHHHHhC----CCC----HHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CC------CC---
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQE----PDN----AEVWLSLGISLAENE-QDPQAIAALSKCLSI----EP------KN--- 1672 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeld----Pdn----aeAl~~LA~ay~~lG-dyeEALe~yeKALeL----dP------dn--- 1672 (1956)
..+.|+++.|..++.++-... |+. +..+++.|......+ +++.|...+++++++ .+ +.
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356889999999999986654 322 346788888888889 999999999999887 21 11
Q ss_pred -HHHHHHHHHHHHHcCCHHHHHH---HHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1673 -LEALMAISICFTNEACLHDALD---TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1673 -aeAl~~LA~aY~~lGdydEALe---~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
..++..++.+|...+.++...+ +++.+-.. .|+ .+..+...-.++...++.+++.+.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~---------------~~~~~~L~l~il~~~~~~~~~~~~ 143 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE----YGN---------------KPEVFLLKLEILLKSFDEEEYEEI 143 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCC---------------CcHHHHHHHHHHhccCChhHHHHH
Confidence 2356788999988887654333 33333222 222 222332233444448899999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH---HHHHCC--C------hH
Q psy8682 1749 YLNAARQCPSQSIDPDVQNGLGVL-FNLSDEYDKAVDCFRSALQVR--PDDSRLWNRLGA---SLANGN--R------PE 1814 (1956)
Q Consensus 1749 LekALel~P~n~~~a~a~~~LG~l-y~~lGdyeEAie~fekALel~--PdnaeA~~nLG~---ay~qlG--r------ye 1814 (1956)
+.+++...+-. ....-..+..+ .........|..++...+... |.... +..... ++...+ + .+
T Consensus 144 L~~mi~~~~~~--e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e~~vl~~~~~~~~~~~~~~~~~i~ 220 (278)
T PF08631_consen 144 LMRMIRSVDHS--ESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLEKLVLTRVLLTTQSKDLSSSEKIE 220 (278)
T ss_pred HHHHHHhcccc--cchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHHHHHHHHHHHHcCCccccchhHHH
Confidence 99998865422 01111112222 112244567777777776543 33221 332222 222222 1 22
Q ss_pred HHHHHHHHHHhh--CCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1815 EAVEAYHTALQL--SPGFV-------RARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1815 EAie~yeKALeL--~Pdna-------eA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
.....+....+. .|-.. ..+.+.|...++.++|++|...|+-++
T Consensus 221 ~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 221 SLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 222333322211 22222 245677889999999999999999876
No 280
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.02 E-value=0.56 Score=53.59 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=55.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ 1808 (1956)
.+.+|..+...+++++|+..++.++....+......+-.+||++...+|++++|+..++..-.-. =.+......|.++.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill 170 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL 170 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence 34556666666677777766666665433332334455566666666666666666655422100 01122334566666
Q ss_pred HCCChHHHHHHHHHHHhhCC
Q psy8682 1809 NGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1809 qlGryeEAie~yeKALeL~P 1828 (1956)
..|+-++|...|+++++..+
T Consensus 171 ~kg~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 171 AKGDKQEARAAYEKALESDA 190 (207)
T ss_pred HcCchHHHHHHHHHHHHccC
Confidence 66666666666666666543
No 281
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=94.94 E-value=1.6 Score=54.67 Aligned_cols=174 Identities=14% Similarity=0.052 Sum_probs=108.4
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-c
Q psy8682 1632 AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-P 1710 (1956)
Q Consensus 1632 LeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd-~ 1710 (1956)
++.+|.+.+++..++.++..+|++..|.+++++|+-.. ..+... .|....... .... .
T Consensus 33 l~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~----------e~~~~~---------~F~~~~~~~--~~g~~r 91 (360)
T PF04910_consen 33 LQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAF----------ERAFHP---------SFSPFRSNL--TSGNCR 91 (360)
T ss_pred HHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----------HHHHHH---------Hhhhhhccc--ccCccc
Confidence 45667777777777777777777777777777765321 111100 000000000 0000 0
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
-.|.... ....-.+.+.....+.+.|-+..|+++.+-.+.++|.. ....+++.+-....+.++|+--+..++...
T Consensus 92 L~~~~~e----NR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 92 LDYRRPE----NRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred cCCcccc----chHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-CcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 0011111 12334456667788889999999999999999999984 223445555556678888988888877765
Q ss_pred HhCC-----CCHHHHHHHHHHHHHCCCh---------------HHHHHHHHHHHhhCCCcH
Q psy8682 1791 QVRP-----DDSRLWNRLGASLANGNRP---------------EEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1791 el~P-----dnaeA~~nLG~ay~qlGry---------------eEAie~yeKALeL~Pdna 1831 (1956)
.... ..+...+.++.++...++- ++|...+.+|+...|...
T Consensus 167 ~~~~~~~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 167 AKCYRNWLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred hhhhhhhhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 5211 1345667788888888888 899999999998877643
No 282
>KOG2300|consensus
Probab=94.93 E-value=0.82 Score=57.69 Aligned_cols=204 Identities=12% Similarity=0.036 Sum_probs=141.9
Q ss_pred cCChHHHHHHHHHHHHhC------CCCH--------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1652 NEQDPQAIAALSKCLSIE------PKNL--------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1652 lGdyeEALe~yeKALeLd------Pdna--------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.|-+++|.++-++++..- +... ..+-.++.+-.-.|++.+|++....+.+.+. ..|. ..+.
T Consensus 288 ~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~-r~p~----~~Ll 362 (629)
T KOG2300|consen 288 AGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCT-RFPT----PLLL 362 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-hCCc----hHHH
Confidence 455677777777666542 1111 1344567777788999999999888776510 0222 0011
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD- 1796 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn- 1796 (1956)
....+..+..+|.....-+.++.|...|..|.+.-......+....++|..|.+.|+-+.-.+.++ .+.|.+
T Consensus 363 ----r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i~p~nt 435 (629)
T KOG2300|consen 363 ----RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALD---LIGPLNT 435 (629)
T ss_pred ----HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHH---hcCCCCC
Confidence 112445567788888899999999999999998755432345566789999999887554444333 344442
Q ss_pred ---------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1797 ---------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1797 ---------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
..+++..|...+.++++.||...+++.++...- ..-.+..|+.+..-.|+..++.+...-++++.
T Consensus 436 ~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlA 515 (629)
T KOG2300|consen 436 NSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLA 515 (629)
T ss_pred CcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHH
Confidence 356777888899999999999999999987521 12356778999999999999999999998887
Q ss_pred CCChhc
Q psy8682 1862 AATHDG 1867 (1956)
Q Consensus 1862 Pdn~dA 1867 (1956)
...++.
T Consensus 516 kKi~Di 521 (629)
T KOG2300|consen 516 KKIPDI 521 (629)
T ss_pred hcCCCc
Confidence 665553
No 283
>KOG1308|consensus
Probab=94.92 E-value=0.013 Score=70.80 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=87.8
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA 1850 (1956)
.-.+..|.+++|++.|..++.++|..+..+...+.++.++++...|+..|..|++++|+...-|...+.+...+|++++|
T Consensus 122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred HHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 33457889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCC
Q psy8682 1851 VEHFLTALNQQAA 1863 (1956)
Q Consensus 1851 ie~yekALeLdPd 1863 (1956)
..++..+.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999998765
No 284
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.79 E-value=0.48 Score=54.09 Aligned_cols=120 Identities=14% Similarity=0.056 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAY 1820 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~y 1820 (1956)
+......+....++.+.+...+...++..+...|++++|+..++.++....+. +.+-.+||.+...+|++++|+..+
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L 149 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL 149 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 34444455555555542233445667888899999999999999999764442 356678999999999999999988
Q ss_pred HHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1821 HTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1821 eKALeL~Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
..... +. ....-...|.++...|+.++|+..|++++...++.+
T Consensus 150 ~t~~~--~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~~ 193 (207)
T COG2976 150 DTIKE--ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASPA 193 (207)
T ss_pred hcccc--ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCChH
Confidence 76432 22 123355689999999999999999999999986533
No 285
>KOG0985|consensus
Probab=94.63 E-value=2.5 Score=57.18 Aligned_cols=183 Identities=14% Similarity=0.134 Sum_probs=134.3
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1617 RQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1617 k~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~l 1696 (1956)
.-+..+.|.++.++. +.+.+|..+|.+..+.|...+|++.|-+| +++..|.....+....|.|++-+.++
T Consensus 1087 ~i~~ldRA~efAe~~-----n~p~vWsqlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1087 NIGSLDRAYEFAERC-----NEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred HhhhHHHHHHHHHhh-----CChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345667777766654 46789999999999999999999999764 56678888888889999999999998
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
.-+-+..+ .|. .-..+..+|.+.++..+-.+.+ ..|+. + -.-..|.-++..
T Consensus 1157 ~MaRkk~~--E~~------------------id~eLi~AyAkt~rl~elE~fi-----~gpN~---A-~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1157 LMARKKVR--EPY------------------IDSELIFAYAKTNRLTELEEFI-----AGPNV---A-NIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHhhc--Ccc------------------chHHHHHHHHHhchHHHHHHHh-----cCCCc---h-hHHHHhHHHhhh
Confidence 88776611 122 1122445667777776654433 34554 2 245667778889
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
|.|+.|.-+|... .-|..|+..+..+|+|..|...-++| ++...|...+.++...+.+.-|.
T Consensus 1208 ~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQ 1269 (1666)
T ss_pred hhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHH
Confidence 9999998888653 44778999999999999999999887 45677877777777766665553
No 286
>KOG0890|consensus
Probab=94.07 E-value=11 Score=55.72 Aligned_cols=288 Identities=10% Similarity=0.011 Sum_probs=156.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHc
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI-CFTNE 1686 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~-aY~~l 1686 (1956)
+...-..+...|+++.|..+|+++++.+|+....+...-...+..+.+...+-..+-.....++..+-++.++. +....
T Consensus 1452 l~~qil~~e~~g~~~da~~Cye~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l 1531 (2382)
T KOG0890|consen 1452 LYQQILEHEASGNWADAAACYERLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRL 1531 (2382)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhh
Confidence 56666777889999999999999999999988888888888888888888888777666655655555555442 33566
Q ss_pred CCHHHHHHHHH-------------HHHhcCCCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1687 ACLHDALDTLK-------------DKIRPGQESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1687 GdydEALe~le-------------KALelg~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++++.-..+.. +++-. .++ ......++. ........++. +....|-|..+.++.-+
T Consensus 1532 ~qwD~~e~~l~~~n~e~w~~~~~g~~ll~----~~~kD~~~~~~~i~----~~r~~~i~~ls-a~s~~~Sy~~~Y~~~~k 1602 (2382)
T KOG0890|consen 1532 SQWDLLESYLSDRNIEYWSVESIGKLLLR----NKKKDEIATLDLIE----NSRELVIENLS-ACSIEGSYVRSYEILMK 1602 (2382)
T ss_pred cchhhhhhhhhcccccchhHHHHHHHHHh----hcccchhhHHHHHH----HHHHHhhhhHH-HhhccchHHHHHHHHHH
Confidence 66665555432 00000 000 000000000 00000000111 11111233333333322
Q ss_pred HHH-------------hCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----CCCHHHHHHHHHHHHH
Q psy8682 1752 AAR-------------QCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ---VR----PDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1752 ALe-------------l~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALe---l~----PdnaeA~~nLG~ay~q 1809 (1956)
... ..++. ....+-|.++...-....+..+-+-.+++++- .+ ..-.+.|...|.+...
T Consensus 1603 LH~l~el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~ 1682 (2382)
T KOG0890|consen 1603 LHLLLELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARL 1682 (2382)
T ss_pred HHHHHHHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHh
Confidence 211 11111 01122233332222222223444444554432 12 2245778888888888
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC--------h---------hchhccc
Q psy8682 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT--------H---------DGLTPHG 1872 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn--------~---------dA~~~LG 1872 (1956)
.|+++.|..+.-+|.+.. -+.++...|..+...|+...|+..+++.+.++-.+ | .+....+
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~ 1760 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKIT 1760 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHH
Confidence 888888888887777665 45677778888888888888888888888554222 1 1222223
Q ss_pred cchhhhccc-HHHHHHHHHhccccCCC-Cccccccc
Q psy8682 1873 LEPRAVKEM-SDSIWYSLRGFHPPFGD-KLPHINLT 1906 (1956)
Q Consensus 1873 ~l~~~lg~~-seAIws~Lr~Al~l~gr-~~~al~La 1906 (1956)
......++. ..++..++..+.+..+. .+.+..++
T Consensus 1761 ~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~ 1796 (2382)
T KOG0890|consen 1761 KYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLG 1796 (2382)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHH
Confidence 333334443 34677777777777763 34444444
No 287
>KOG2041|consensus
Probab=93.92 E-value=3.5 Score=53.95 Aligned_cols=134 Identities=9% Similarity=-0.072 Sum_probs=74.9
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH----------HHHHHHHHHcCChHHHH
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW----------LSLGISLAENEQDPQAI 1659 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl----------~~LA~ay~~lGdyeEAL 1659 (1956)
++.|.++..+||. ++.|-.+|......-.++.|...|-+.-.. +. .... ...|.+-.--|++++|.
T Consensus 679 ledA~qfiEdnPH--prLWrllAe~Al~Kl~l~tAE~AFVrc~dY-~G-ik~vkrl~~i~s~~~q~aei~~~~g~feeae 754 (1189)
T KOG2041|consen 679 LEDAIQFIEDNPH--PRLWRLLAEYALFKLALDTAEHAFVRCGDY-AG-IKLVKRLRTIHSKEQQRAEISAFYGEFEEAE 754 (1189)
T ss_pred hHHHHHHHhcCCc--hHHHHHHHHHHHHHHhhhhHhhhhhhhccc-cc-hhHHHHhhhhhhHHHHhHhHhhhhcchhHhh
Confidence 4567777788874 678888888888887888887777654221 11 1111 22334444457788887
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc
Q psy8682 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR 1739 (1956)
Q Consensus 1660 e~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l 1739 (1956)
+.|-.+-..+ .-..++..+|++-...+.++..-.- +.+ .....++.++|..+...
T Consensus 755 k~yld~drrD--------LAielr~klgDwfrV~qL~r~g~~d----~dD-------------~~~e~A~r~ig~~fa~~ 809 (1189)
T KOG2041|consen 755 KLYLDADRRD--------LAIELRKKLGDWFRVYQLIRNGGSD----DDD-------------EGKEDAFRNIGETFAEM 809 (1189)
T ss_pred hhhhccchhh--------hhHHHHHhhhhHHHHHHHHHccCCC----cch-------------HHHHHHHHHHHHHHHHH
Confidence 7775432221 1112344555555555444321111 111 12344566677777777
Q ss_pred CCHHHHHHHHHHH
Q psy8682 1740 EIHQQVLSLYLNA 1752 (1956)
Q Consensus 1740 GdyeEAle~LekA 1752 (1956)
..+++|.++|...
T Consensus 810 ~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 810 MEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777776554
No 288
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=93.92 E-value=26 Score=44.93 Aligned_cols=142 Identities=6% Similarity=-0.166 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE-----VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISI 1681 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnae-----Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~ 1681 (1956)
.+...|..+.+++++.+|...|.++.+...+.+. ++.++-.-.+-+++.+.-...+...-+..|..+-...-.|.
T Consensus 8 llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L 87 (549)
T PF07079_consen 8 LLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKAL 87 (549)
T ss_pred HHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHH
Confidence 4556899999999999999999999877655432 33333333344555555555555555567777777778888
Q ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1682 CFTNEACLHDALDTLKDKIRPGQESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1682 aY~~lGdydEALe~leKALelg~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
..++.+.|.+|++.+...-.......|. ......+. .....-.-.|.++...|++.++...+++.+.
T Consensus 88 ~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~------~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~ 156 (549)
T PF07079_consen 88 VAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF------SDFFLDEIEAHSLIETGRFSEGRAILNRIIE 156 (549)
T ss_pred HHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 9999999999999987776551111222 00111111 1111223367888889999988888777654
No 289
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=93.91 E-value=0.1 Score=42.13 Aligned_cols=32 Identities=38% Similarity=0.481 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+++.+|.+|..+|++++|+.+|+++++++|+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 45666777777777777777777777777664
No 290
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=93.86 E-value=1.8 Score=54.22 Aligned_cols=156 Identities=17% Similarity=0.092 Sum_probs=108.2
Q ss_pred hhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------CC------------CC---H
Q psy8682 1589 VSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------------EP------------DN---A 1639 (1956)
Q Consensus 1589 ~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------------dP------------dn---a 1639 (1956)
+-+..+.+-..+|. ..++++.++.++..+|+...|.+++++|+-. ++ .| -
T Consensus 25 Dp~~l~~ll~~~Py-HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ff 103 (360)
T PF04910_consen 25 DPNALINLLQKNPY-HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFF 103 (360)
T ss_pred CHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHH
Confidence 34455556677888 8999999999999999999999999999732 11 12 2
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHH-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPK-NLEA-LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1640 eAl~~LA~ay~~lGdyeEALe~yeKALeLdPd-naeA-l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.+++.....+.+.|-+..|+++.+-.+.++|. ++-. ++.+=....+.++|+--++.++..... . +...
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~----~-----~~~~- 173 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAK----C-----YRNW- 173 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhh----h-----hhhh-
Confidence 35667778888999999999999999999998 6644 344444455667787777777765542 0 1110
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCH---------------HHHHHHHHHHHHhCCCC
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIH---------------QQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdy---------------eEAle~LekALel~P~n 1759 (1956)
....+...+.++.++...++. ++|...+.+|+...|.-
T Consensus 174 ----~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~v 226 (360)
T PF04910_consen 174 ----LSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWV 226 (360)
T ss_pred ----hhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHH
Confidence 011233445566667666666 77888888888777753
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.84 E-value=20 Score=43.35 Aligned_cols=121 Identities=14% Similarity=0.081 Sum_probs=86.9
Q ss_pred hHHHHHhchhhHhHhhhh-ccCC---CccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHh----CC---C-------CHH
Q psy8682 1580 DFSRNQRSSVSMHEYTFA-EDNP---MQNETNAFALGQEKLRQG-DLPSAILYLEAAAKQ----EP---D-------NAE 1640 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~-p~NP---~~daeall~LG~aylk~G-dydEAIe~fekALel----dP---d-------nae 1640 (1956)
+++.|... +.|+-.+. ..+| ..-+..+|+.|...+..+ ++++|...++++.+. .+ . ...
T Consensus 8 ~~~~A~~~--~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 8 DLDLAEHM--YSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred CHHHHHHH--HHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 44445444 55554433 2333 224678899999999999 999999999999887 21 1 134
Q ss_pred HHHHHHHHHHHcCChH---HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1641 VWLSLGISLAENEQDP---QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdye---EALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++..++.+|...+.++ +|..+++.+-...|+.+..+...-.+....++.+++.+.+.+++..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 6788999999887764 5666666666667888877755555555589999999999999986
No 292
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=93.64 E-value=0.38 Score=51.60 Aligned_cols=108 Identities=14% Similarity=0.218 Sum_probs=74.1
Q ss_pred HHHHHHHHHH-hhC-CCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhc---------CCCHHHHH
Q psy8682 750 KAVDCFRSAL-QVR-PDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKN---------RMVISNWI 817 (1956)
Q Consensus 750 kArelFerAL-kkf-P~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~---------~~s~~lWl 817 (1956)
.-+..|++.+ ... .+| -.+|.+|+.......|.. +... .-..++|||++.+ +...++|+
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~W~~~~~p~g--~~~s-------~L~~lLerc~~~f~~~~~YknD~RyLkiWi 73 (125)
T smart00777 3 QQRQAFEQELQDLYEGDDPLDLWLRYIKWTEENYPQG--GKES-------GLLTLLERCIRYFEDDERYKNDPRYLKIWL 73 (125)
T ss_pred HHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCCCC--Cchh-------hHHHHHHHHHHHhhhhhhhcCCHHHHHHHH
Confidence 3456677666 211 233 589999999887544321 1111 2334666666543 22368999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 818 KYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDR 872 (1956)
Q Consensus 818 kYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFER 872 (1956)
+||++. + ..+.+|.-+.+ .-.+...+|..|+.+....|++..|..||+.
T Consensus 74 ~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 74 KYADNC---D---EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred HHHHhc---C---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 999873 3 35778877776 4567788899999999999999999999975
No 293
>KOG0530|consensus
Probab=93.33 E-value=5 Score=47.91 Aligned_cols=202 Identities=14% Similarity=0.067 Sum_probs=140.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH-HHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH-DALDT 1695 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd-EALe~ 1695 (1956)
...-..|+.+-+.++.++|.+..+|...-.++..++ +..+-++++...++.+|.+..+|...-.+....|++. .-++.
T Consensus 56 ~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELef 135 (318)
T KOG0530|consen 56 NEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELEF 135 (318)
T ss_pred cccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHHH
Confidence 335577899999999999999999988888877665 5677789999999999999999999888888889888 88889
Q ss_pred HHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1696 leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
.+.++.. +.+ ... ++...-.++..-+.++.-+.+..+.++.+-.+ -.+|+.+-.+...
T Consensus 136 ~~~~l~~----DaK---NYH------------aWshRqW~~r~F~~~~~EL~y~~~Lle~Di~N---NSAWN~Ryfvi~~ 193 (318)
T KOG0530|consen 136 TKLMLDD----DAK---NYH------------AWSHRQWVLRFFKDYEDELAYADELLEEDIRN---NSAWNQRYFVITN 193 (318)
T ss_pred HHHHHhc----ccc---chh------------hhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhc---cchhheeeEEEEe
Confidence 9999887 444 111 22333456666777999999999999887655 3445433211111
Q ss_pred -cC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC--ChHHHHHHHHHHH-hhCCCcHHHHHHHHHHH
Q psy8682 1776 -SD-----EYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GN--RPEEAVEAYHTAL-QLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1776 -lG-----dyeEAie~fekALel~PdnaeA~~nLG~ay~q-lG--ryeEAie~yeKAL-eL~PdnaeA~~~LA~ay 1841 (1956)
.| ..+.-+.+..+.+.+.|++..+|+.|.-++.. .| .+.+-.......+ +.....+..+.-+...|
T Consensus 194 ~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l~~d~gl~s~s~vv~f~~~l~~~~~~~sP~lla~l~d~~ 269 (318)
T KOG0530|consen 194 TKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLLELDSGLSSDSKVVSFVENLYLQLPKRSPFLLAFLLDLY 269 (318)
T ss_pred ccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhccCCcCCchHHHHHHHHhhccCCCChhHHHHHHHHH
Confidence 11 23445667778888999999999999888875 44 1333333333333 33334455555555555
No 294
>KOG4507|consensus
Probab=92.90 E-value=0.24 Score=63.12 Aligned_cols=109 Identities=16% Similarity=0.082 Sum_probs=93.8
Q ss_pred HHHHH-HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1732 FRSPL-SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1732 LA~ay-~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
+|.+| ...|+...|++++..|+...|.. ......+||.++.+.|-.-.|-..+.+++.+....+...+.+|.++..+
T Consensus 612 ~aglywr~~gn~~~a~~cl~~a~~~~p~~--~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l 689 (886)
T KOG4507|consen 612 EAGLYWRAVGNSTFAIACLQRALNLAPLQ--QDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLAL 689 (886)
T ss_pred cccceeeecCCcHHHHHHHHHHhccChhh--hcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHH
Confidence 33444 46899999999999999998875 2345788999999999999999999999999988899999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
.+.+.|++.|++|++++|+++..-..|-.+..
T Consensus 690 ~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 690 KNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred hhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 99999999999999999999887666554443
No 295
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=92.74 E-value=38 Score=43.47 Aligned_cols=53 Identities=11% Similarity=0.019 Sum_probs=44.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1838 GITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
|..++..|+|.++.-+-.=..++.| ++.++..+|.++...+.|.+| |.++...
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA-~~~l~~L 521 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEA-WEYLQKL 521 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHH-HHHHHhC
Confidence 4557789999999999999999999 799999999999998998665 4777754
No 296
>KOG3824|consensus
Probab=92.63 E-value=0.28 Score=58.53 Aligned_cols=79 Identities=23% Similarity=0.278 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
.+...+..|.-..+.|+.++|..+|+.|+.++|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+..
T Consensus 115 EA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 115 EAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 3445667777888999999999999999999999999999999999999999999999999999999999998877653
No 297
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.60 E-value=0.18 Score=40.79 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
+|+.+|.+|..+|++++|+.+|+++++++|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555555555555555555555555544
No 298
>KOG1464|consensus
Probab=92.51 E-value=2 Score=51.02 Aligned_cols=66 Identities=8% Similarity=0.022 Sum_probs=44.6
Q ss_pred CCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1601 PMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA----EVWLSLGISLAENEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1601 P~~daeall~LG~aylk~GdydEAIe~fekALeldPdna----eAl~~LA~ay~~lGdyeEALe~yeKALe 1667 (1956)
|..+.+..|.-+..+. ..+.++|+..|++++++.+... .++-.+..+++++++|++-+..|.+.+.
T Consensus 24 pdVDlENQYYnsK~l~-e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 24 PDVDLENQYYNSKGLK-EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred CCcchHhhhhcccccc-ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3334455444444433 3378888999999888887653 3666677778888888888877777654
No 299
>KOG3824|consensus
Probab=91.76 E-value=0.47 Score=56.80 Aligned_cols=69 Identities=26% Similarity=0.283 Sum_probs=45.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
.-..+.|+.++|...|+.|+++.|.+++++..+|......++.-+|-.+|-+|+.+.|.+.+++.+.+.
T Consensus 124 ~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R 192 (472)
T KOG3824|consen 124 GRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR 192 (472)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence 334456666677777777777777777666666666666666666666666666666666666655544
No 300
>KOG0890|consensus
Probab=91.68 E-value=20 Score=53.31 Aligned_cols=132 Identities=11% Similarity=0.002 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHH---hCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1742 HQQVLSLYLNAAR---QCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1742 yeEAle~LekALe---l~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
..+-+-.+++++- .+|+. ......|...|++....|+++.|..++-+|.+.. -+.++...|..+-..|+-..|+
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al 1722 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNAL 1722 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHH
Confidence 4444444555432 23322 2457889999999999999999999999888876 6788999999999999999999
Q ss_pred HHHHHHHhhC-CC----------c------HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1818 EAYHTALQLS-PG----------F------VRARYNLGITCVHLGAN--TQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1818 e~yeKALeL~-Pd----------n------aeA~~~LA~ay~klGdy--EEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
..+++.++.+ |+ . ..+.+.++......|+. ++-+++|..+.++.|...+.++.+|.-|
T Consensus 1723 ~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1723 SVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred HHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 9999999653 22 1 12334444555555553 4557899999999999999999998544
No 301
>KOG0530|consensus
Probab=91.51 E-value=4.5 Score=48.32 Aligned_cols=135 Identities=12% Similarity=0.124 Sum_probs=107.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
.++.+..+-..|+++...++.++|.+ ..+|..+-.++..+ .+..+-++++.+.+.-+|.+..+|...-.+....|+
T Consensus 51 AI~~~~E~S~RAl~LT~d~i~lNpAn---YTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d 127 (318)
T KOG0530|consen 51 AIIAKNEKSPRALQLTEDAIRLNPAN---YTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGD 127 (318)
T ss_pred HHHhccccCHHHHHHHHHHHHhCccc---chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcC
Confidence 34445566678888888889998888 66666665555544 456777888888888889998898888888888888
Q ss_pred hH-HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1813 PE-EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1813 ye-EAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
+. .-++..++++..+..+..+|...--+....+.++.-+.+..+.++.+--|..||+.+
T Consensus 128 ~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~R 187 (318)
T KOG0530|consen 128 PSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQR 187 (318)
T ss_pred cccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhhee
Confidence 87 778888888888888888888888888888888888888888888887777777665
No 302
>PRK10941 hypothetical protein; Provisional
Probab=91.50 E-value=0.75 Score=55.37 Aligned_cols=66 Identities=20% Similarity=0.170 Sum_probs=33.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
.++-.+|.+.++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|++++
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 334444445555555555555555555555544555555555555555555555555555555444
No 303
>KOG2041|consensus
Probab=91.20 E-value=2.8 Score=54.71 Aligned_cols=136 Identities=15% Similarity=0.074 Sum_probs=85.9
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---------HHHHHHHHHHHHcCCHH
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---------EALMAISICFTNEACLH 1690 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---------eAl~~LA~aY~~lGdyd 1690 (1956)
..++|+.+.+ .+| ++..|..+|......-.++-|...|-++-... .-. .--...|.+-..-|+++
T Consensus 678 gledA~qfiE----dnP-HprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~-Gik~vkrl~~i~s~~~q~aei~~~~g~fe 751 (1189)
T KOG2041|consen 678 GLEDAIQFIE----DNP-HPRLWRLLAEYALFKLALDTAEHAFVRCGDYA-GIKLVKRLRTIHSKEQQRAEISAFYGEFE 751 (1189)
T ss_pred chHHHHHHHh----cCC-chHHHHHHHHHHHHHHhhhhHhhhhhhhcccc-chhHHHHhhhhhhHHHHhHhHhhhhcchh
Confidence 4556665543 334 68899999999888888888888777654321 110 00123344444568899
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy8682 1691 DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG 1770 (1956)
Q Consensus 1691 EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG 1770 (1956)
+|.+.|-.+-+. .+ ...++.+.|++-...++++..-.-..+ .....++.++|
T Consensus 752 eaek~yld~drr------------DL---------------Aielr~klgDwfrV~qL~r~g~~d~dD-~~~e~A~r~ig 803 (1189)
T KOG2041|consen 752 EAEKLYLDADRR------------DL---------------AIELRKKLGDWFRVYQLIRNGGSDDDD-EGKEDAFRNIG 803 (1189)
T ss_pred Hhhhhhhccchh------------hh---------------hHHHHHhhhhHHHHHHHHHccCCCcch-HHHHHHHHHHH
Confidence 998888665433 11 124556677777666666543221111 24467889999
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekA 1789 (1956)
..+..+..+++|.++|.+.
T Consensus 804 ~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 804 ETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 9999999999999988764
No 304
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.05 E-value=0.24 Score=41.30 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=15.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1834 RYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1834 ~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+.+||.+|.++|++++|+.+|+++|.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 455666666666666666666664443
No 305
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.96 E-value=0.35 Score=38.46 Aligned_cols=31 Identities=26% Similarity=0.365 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+++.+|.++..+|++++|+..|+++++..|+
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 5666777777777777777777777777665
No 306
>KOG1464|consensus
Probab=90.66 E-value=8.9 Score=45.81 Aligned_cols=51 Identities=6% Similarity=-0.070 Sum_probs=41.1
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAK 1633 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALe 1633 (1956)
-++|++. |++.+++.+.-...-..++-.+..+.+..|+|++-...|.+.+.
T Consensus 43 p~~Al~s--F~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 43 PKEALSS--FQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred HHHHHHH--HHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 3678888 88888887766655667888888889999999999999988764
No 307
>PRK10941 hypothetical protein; Provisional
Probab=90.50 E-value=2 Score=51.79 Aligned_cols=74 Identities=14% Similarity=0.076 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~ 1836 (1956)
.....++-.+|...++++.|+.+.+..+.+.|+++.-+...|.+|.++|.+..|...++..++..|+++.+-.-
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 34566777788899999999999999999999999999999999999999999999999999999988765543
No 308
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=90.48 E-value=1.7 Score=45.83 Aligned_cols=92 Identities=10% Similarity=0.164 Sum_probs=76.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcC----C-------hHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNA---EVWLSLGISLAENE----Q-------DPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPdna---eAl~~LA~ay~~lG----d-------yeEALe~yeKALeLdPdnaeAl 1676 (1956)
+|..++..|++-+|+++.+..+..++++. ..+..-|.++..+. + .-.|+++|.++..+.|..+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 57788999999999999999999988765 45566777776543 2 3468999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
+.+|.-+-....|+++..-.++++..
T Consensus 82 ~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 99998877777788888888888876
No 309
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=90.23 E-value=29 Score=46.57 Aligned_cols=241 Identities=15% Similarity=0.012 Sum_probs=138.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCC-------------------HHHHHHHHHHHHHcCChHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQE-------PDN-------------------AEVWLSLGISLAENEQDPQAIA 1660 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeld-------Pdn-------------------aeAl~~LA~ay~~lGdyeEALe 1660 (1956)
.++--|......+..+.|.++++++++.- +.. ....+..+.+..-.+++..|..
T Consensus 303 ~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~ 382 (608)
T PF10345_consen 303 VYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQ 382 (608)
T ss_pred HHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 44445666677777778888888776531 110 1234566777788999999999
Q ss_pred HHHHHHHhC---CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCCCCCchhhhhhcCcchhhhhHH
Q psy8682 1661 ALSKCLSIE---PK------NLEALMAISICFTNEACLHDALDTLKDKIRPG----QESNPRPSAYKADALPSKLTRLAN 1727 (1956)
Q Consensus 1661 ~yeKALeLd---Pd------naeAl~~LA~aY~~lGdydEALe~leKALelg----~e~dPd~eay~~Ll~~~Kl~e~a~ 1727 (1956)
....+.... |. .+..++..|..+...|+.+.|+.+|.+..-.. ....+. ..-..-
T Consensus 383 ~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~------------~El~il 450 (608)
T PF10345_consen 383 ELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF------------RELYIL 450 (608)
T ss_pred HHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc------------hHHHHH
Confidence 988777653 22 35678889999999999999999998333110 000222 111233
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH-hCCCC-----CCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhC-CC---
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAAR-QCPSQ-----SIDPDVQNGLGVLF--NLSDEYDKAVDCFRSALQVR-PD--- 1795 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALe-l~P~n-----~~~a~a~~~LG~ly--~~lGdyeEAie~fekALel~-Pd--- 1795 (1956)
+..++..++...+.-......+..+++ +.|.. .....++..+-.++ ...-...++...+.++++.. ..
T Consensus 451 a~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n 530 (608)
T PF10345_consen 451 AALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGN 530 (608)
T ss_pred HHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhcc
Confidence 455666666655543332212222222 23321 00011111111111 12223447888888777665 11
Q ss_pred ---CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HH-HH-----HHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1796 ---DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VR-AR-----YNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1796 ---naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---ae-A~-----~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
..-++..+|..++ .|+..+......++....... .. .| -.++..+...|+.++|.....+.-..
T Consensus 531 ~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~~ 606 (608)
T PF10345_consen 531 SQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDRV 606 (608)
T ss_pred chHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh
Confidence 1234556666666 788888777777776643332 33 33 24556688899999998887776543
No 310
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.07 E-value=0.47 Score=37.73 Aligned_cols=33 Identities=24% Similarity=0.431 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCC
Q psy8682 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDF 765 (1956)
Q Consensus 733 dV~~~La~Ly~~sgeyEkArelFerALkkfP~d 765 (1956)
+++..+|.+|...|++++|.+.|++.++.+|++
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 467899999999999999999999999999975
No 311
>KOG1463|consensus
Probab=89.52 E-value=18 Score=44.78 Aligned_cols=254 Identities=13% Similarity=0.089 Sum_probs=143.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh---CC--CCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHH-----
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQ---EP--DNAEVWLSLGISLA-ENEQDPQAIAALSKCLSIEPKNLE----- 1674 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALel---dP--dnaeAl~~LA~ay~-~lGdyeEALe~yeKALeLdPdnae----- 1674 (1956)
...+.+|..|.+.|++.+-.......-.. -+ ..+.....+-.... ..+....-+..+..+++.......
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq 128 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQ 128 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHH
Confidence 35566677777777666554444433211 11 11111111211111 122333445555555544322111
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1675 -ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1675 -Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.-..+..+|...++|.+|+......++. ...+-.. ....+.+..-..+|....+..+|...+..|-
T Consensus 129 ~Learli~Ly~d~~~YteAlaL~~~L~rE----------lKKlDDK---~lLvev~llESK~y~~l~Nl~KakasLTsAR 195 (411)
T KOG1463|consen 129 SLEARLIRLYNDTKRYTEALALINDLLRE----------LKKLDDK---ILLVEVHLLESKAYHALRNLPKAKASLTSAR 195 (411)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHH----------HHhcccc---cceeeehhhhhHHHHHHhcchhHHHHHHHHH
Confidence 2345788899999999999888777654 1111100 1223344445677888888888888877765
Q ss_pred HhCCCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHH---HHHHHHHHCCChHHHH--HHHH
Q psy8682 1754 RQCPSQS----IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP---DDSRLWN---RLGASLANGNRPEEAV--EAYH 1821 (1956)
Q Consensus 1754 el~P~n~----~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P---dnaeA~~---nLG~ay~qlGryeEAi--e~ye 1821 (1956)
.....-. ..+.+-..-|.++....+|.-|..+|-+|++-.. ++..+.. .+-.+-..++..++-- -.-+
T Consensus 196 T~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K 275 (411)
T KOG1463|consen 196 TTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAK 275 (411)
T ss_pred HhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhH
Confidence 4321110 1222334446777777899999999999987532 2233333 3334444566666543 3345
Q ss_pred HHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1822 TALQLSPGFVRARYNLGITCVH--LGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1822 KALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
.+++......++....+.++.+ +.+++.|+..|..-+..+|= +...+..+|
T Consensus 276 ~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~i---vr~Hl~~Ly 328 (411)
T KOG1463|consen 276 LALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPI---VRSHLQSLY 328 (411)
T ss_pred HHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChH---HHHHHHHHH
Confidence 5666666778888888888754 45788888888888877665 444444333
No 312
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.40 E-value=99 Score=42.13 Aligned_cols=123 Identities=9% Similarity=-0.039 Sum_probs=72.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGrye 1814 (1956)
-....+.+.|...+.+......-. .....++..+|.-....+...+|...+..+..... +.........+....++++
T Consensus 251 Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~e~r~r~Al~~~dw~ 329 (644)
T PRK11619 251 SVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLLERRVRMALGTGDRR 329 (644)
T ss_pred HHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHHHHHHHHHHHccCHH
Confidence 345566778888887654444322 01122334444333333225667777776553322 2333333344445778887
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1815 EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.+...+...-..........|.+|.++..+|+.++|..+|+++..
T Consensus 330 ~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 330 GLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 777777665433344567788888888888888888888888743
No 313
>KOG3783|consensus
Probab=89.29 E-value=42 Score=43.95 Aligned_cols=220 Identities=15% Similarity=0.066 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1622 PSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL----EALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1622 dEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna----eAl~~LA~aY~~lGdydEALe~le 1697 (1956)
....+.+.......|+++......+..+...|+.+.|+..++.+++ +... -.++.+|.++..+.+|..|...+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~ 327 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMKQVKSLMVFERAWLSVGQHQYSRAADSFD 327 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 4455555566677899998888999999999998888888888877 2211 245678888888889999999988
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH-HHHH--------hcCCHHHHHHHHHHH---HHhCCCC-CCC--
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR-SPLS--------SREIHQQVLSLYLNA---ARQCPSQ-SID-- 1762 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA-~ay~--------~lGdyeEAle~LekA---Lel~P~n-~~~-- 1762 (1956)
..... .+ |.+.. |..++ -++. ..|+-++|..+++.. ++..|.+ +.+
T Consensus 328 ~L~de-----sd---WS~a~-----------Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f 388 (546)
T KOG3783|consen 328 LLRDE-----SD---WSHAF-----------YTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKF 388 (546)
T ss_pred HHHhh-----hh---hhHHH-----------HHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHH
Confidence 88776 11 33322 11111 2221 233444444444333 2222222 000
Q ss_pred ------------------HH--HHHHHHHHHHHc--CCHHHHHHHHHHHHH---h-CCCCH-HHHHHHHHHHHHCCChHH
Q psy8682 1763 ------------------PD--VQNGLGVLFNLS--DEYDKAVDCFRSALQ---V-RPDDS-RLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1763 ------------------a~--a~~~LG~ly~~l--GdyeEAie~fekALe---l-~Pdna-eA~~nLG~ay~qlGryeE 1815 (1956)
.. .++.++..+..- ....+.. -++..+. . ++++. --+..+|.++..+|+...
T Consensus 389 ~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~ 467 (546)
T KOG3783|consen 389 IVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEV 467 (546)
T ss_pred HHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 00 112222222111 1111111 1111111 1 12222 234567888888888888
Q ss_pred HHHHHHHHHhh---CCC----cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCC
Q psy8682 1816 AVEAYHTALQL---SPG----FVRARYNLGITCVHLGA-NTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1816 Aie~yeKALeL---~Pd----naeA~~~LA~ay~klGd-yEEAie~yekALeLdPd 1863 (1956)
|..+|..+++. ... .+.++|.||..|..+|. ..+|..++.+|-.-..+
T Consensus 468 a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 468 APKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 88888877742 111 35678888888888887 88888888888776544
No 314
>KOG1839|consensus
Probab=89.27 E-value=3.1 Score=58.16 Aligned_cols=174 Identities=10% Similarity=-0.042 Sum_probs=121.9
Q ss_pred HHHHHHHHHHcCChHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1642 WLSLGISLAENEQDPQAIA------ALS-KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe------~ye-KALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
....|......|.+.+|.+ .+. ..-.+.|+....+..|+.++..++++++|+....++.-+ +.
T Consensus 935 ~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii----------~e 1004 (1236)
T KOG1839|consen 935 SPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACII----------SE 1004 (1236)
T ss_pred hhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceee----------ec
Confidence 3444555555555555555 444 233456788888999999999999999999998888776 22
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC-----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~-----P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...... .+.....+.+++......++...|+..+.++..+. |..+..+....+++.++...++++.|+.+.+.|
T Consensus 1005 R~~g~d-s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A 1083 (1236)
T KOG1839|consen 1005 RVLGKD-SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESA 1083 (1236)
T ss_pred hhccCC-CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHH
Confidence 222111 45666778888888888889999999998887652 222223556688888888889999999999999
Q ss_pred HHhCC--------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1790 LQVRP--------DDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1790 Lel~P--------dnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
++... .....+..++.++...+++..|+...+....+
T Consensus 1084 ~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1084 LAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 88542 13455666777777777777777666665543
No 315
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.12 E-value=9 Score=43.48 Aligned_cols=138 Identities=13% Similarity=0.092 Sum_probs=101.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C--HHHHHHHHHHHH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--D--SRLWNRLGASLA 1808 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--n--aeA~~nLG~ay~ 1808 (1956)
+.-+...+..++|+..|...-+..-.. +...+....|.+....|+...|+..|.++-...+- - ..+...-+.++.
T Consensus 65 AL~lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLv 143 (221)
T COG4649 65 ALKLAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLV 143 (221)
T ss_pred HHHHHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHh
Confidence 344456788899999998887766554 45667788899999999999999999998765432 2 234556677888
Q ss_pred HCCChHHHHHHHHHHH-hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1809 NGNRPEEAVEAYHTAL-QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1809 qlGryeEAie~yeKAL-eL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
..|-|++-....+..- ..+|-...+.-.||.+-.+.|++..|...|.+... +.+.|....+++
T Consensus 144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~-Da~aprnirqRA 207 (221)
T COG4649 144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN-DAQAPRNIRQRA 207 (221)
T ss_pred ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc-cccCcHHHHHHH
Confidence 8999988766555432 23555677888999999999999999999998877 545444444443
No 316
>KOG1538|consensus
Probab=89.00 E-value=6.3 Score=51.42 Aligned_cols=218 Identities=13% Similarity=-0.036 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh--------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQ--------------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALel--------------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
..|-.+|...+..=+++-|.+.|.++-.+ ....+ --..+|.++...|++.+|.+.|.+.-..+
T Consensus 586 ~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P-~~iLlA~~~Ay~gKF~EAAklFk~~G~en-- 662 (1081)
T KOG1538|consen 586 TDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETP-NDLLLADVFAYQGKFHEAAKLFKRSGHEN-- 662 (1081)
T ss_pred chHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCc-hHHHHHHHHHhhhhHHHHHHHHHHcCchh--
Confidence 36888999888888999999999887432 11111 12346677777777777777776542211
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH-----HHHHHHHHhcCCHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT-----LTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~-----lnLA~ay~~lGdyeEAl 1746 (1956)
.--..|..+..++.|.+++..+- |. .-..+... ...+++ ...|..+...|+.++|+
T Consensus 663 ------RAlEmyTDlRMFD~aQE~~~~g~-------~~--eKKmL~RK----RA~WAr~~kePkaAAEmLiSaGe~~KAi 723 (1081)
T KOG1538|consen 663 ------RALEMYTDLRMFDYAQEFLGSGD-------PK--EKKMLIRK----RADWARNIKEPKAAAEMLISAGEHVKAI 723 (1081)
T ss_pred ------hHHHHHHHHHHHHHHHHHhhcCC-------hH--HHHHHHHH----HHHHhhhcCCcHHHHHHhhcccchhhhh
Confidence 11123445555555555443221 11 00111100 000111 12356667777777776
Q ss_pred HHHH------HHHH----hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH
Q psy8682 1747 SLYL------NAAR----QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816 (1956)
Q Consensus 1747 e~Le------kALe----l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEA 1816 (1956)
...- -+++ ++... .+.+..++..+..+..+.-|.+.|.+.-. ...+-..+...+++.+|
T Consensus 724 ~i~~d~gW~d~lidI~rkld~~e---re~l~~~a~ylk~l~~~gLAaeIF~k~gD--------~ksiVqlHve~~~W~eA 792 (1081)
T KOG1538|consen 724 EICGDHGWVDMLIDIARKLDKAE---REPLLLCATYLKKLDSPGLAAEIFLKMGD--------LKSLVQLHVETQRWDEA 792 (1081)
T ss_pred hhhhcccHHHHHHHHHhhcchhh---hhHHHHHHHHHhhccccchHHHHHHHhcc--------HHHHhhheeecccchHh
Confidence 5431 1121 12222 33444444444455555555555544211 11233445566777777
Q ss_pred HHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1817 VEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1817 ie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
...-++--+.. ..+|+..|..+....++++|.+.|.+|=+
T Consensus 793 FalAe~hPe~~---~dVy~pyaqwLAE~DrFeEAqkAfhkAGr 832 (1081)
T KOG1538|consen 793 FALAEKHPEFK---DDVYMPYAQWLAENDRFEEAQKAFHKAGR 832 (1081)
T ss_pred HhhhhhCcccc---ccccchHHHHhhhhhhHHHHHHHHHHhcc
Confidence 66655433322 34677778888888888888888877644
No 317
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.96 E-value=4.8 Score=43.01 Aligned_cols=110 Identities=16% Similarity=0.094 Sum_probs=62.9
Q ss_pred HHHHHHHH--HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1675 ALMAISIC--FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1675 Al~~LA~a--Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
+|..|+.. ....|.|++|...+++++...+. -|..+.+..- .-.+-.+..|+.++..+|+|++++....++
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srt-iP~eEaFDh~------GFDA~chA~Ls~A~~~Lgry~e~L~sA~~a 81 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRT-IPAEEAFDHD------GFDAFCHAGLSGALAGLGRYDECLQSADRA 81 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT-S-TTS---HH------HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc-CChHhhcccc------cHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 44444443 44568899999999999987322 2332233222 245566777889999999999988877777
Q ss_pred HHhC-------CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1753 ARQC-------PSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1753 Lel~-------P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
+... .+. .....+.+..|..+...|+.++|+..|+.+-+
T Consensus 82 L~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agE 128 (144)
T PF12968_consen 82 LRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 6532 221 01122334455555566666666666655543
No 318
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=88.87 E-value=0.63 Score=38.85 Aligned_cols=28 Identities=36% Similarity=0.437 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
++.+||.+|..+|++++|+.+|++++.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888888886543
No 319
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.66 E-value=2.9 Score=42.46 Aligned_cols=64 Identities=23% Similarity=0.254 Sum_probs=32.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc--HHHHHHHHHHHHHcCC
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF--VRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn--aeA~~~LA~ay~klGd 1846 (1956)
+..+++.+..+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~ 73 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP 73 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence 344555555556666666666666666666666666555555554443 3344444444444444
No 320
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=88.16 E-value=9.1 Score=41.04 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+.++.|.++..+|+.++|+..|+.+-++
T Consensus 102 aVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 102 AVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 4466777788888888888888877654
No 321
>KOG1538|consensus
Probab=88.02 E-value=15 Score=48.14 Aligned_cols=185 Identities=15% Similarity=0.111 Sum_probs=92.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAA------KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--EPKNLEALMAIS 1680 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekAL------eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--dPdnaeAl~~LA 1680 (1956)
..+|..+.-.|++.+|.++|.+.= ++..+ .-.+.++.-+...|.-++-..+.++-.+- +-+.+. .-|
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD--lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk---aAA 710 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYTD--LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK---AAA 710 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH--HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH---HHH
Confidence 445666666777777777775431 11110 11233444444444444443333332221 111111 234
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc--hh-hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS--KL-TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~--Kl-~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
..+...|+.++|+...- +.. |..+.... ++ ....+.+..++..+.....+.-|.+.|.+.-.
T Consensus 711 EmLiSaGe~~KAi~i~~---------d~g---W~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD--- 775 (1081)
T KOG1538|consen 711 EMLISAGEHVKAIEICG---------DHG---WVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD--- 775 (1081)
T ss_pred HHhhcccchhhhhhhhh---------ccc---HHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---
Confidence 45556666666665432 111 22221000 00 11222333444444455555555555544311
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
...+..++...+++.+|....++.-+. -+.+|+-.|.-+....+++||.+.|.+|-
T Consensus 776 --------~ksiVqlHve~~~W~eAFalAe~hPe~---~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 776 --------LKSLVQLHVETQRWDEAFALAEKHPEF---KDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred --------HHHHhhheeecccchHhHhhhhhCccc---cccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 122345566778888887766553222 24578888999999999999998887763
No 322
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=88.02 E-value=0.67 Score=34.51 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++..+|.++..+|++++|+.+|+++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 4555666666666666666666666665554
No 323
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=87.98 E-value=3.1 Score=42.20 Aligned_cols=74 Identities=18% Similarity=0.111 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1624 AILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN--LEALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1624 AIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn--aeAl~~LA~aY~~lGdydEALe~le 1697 (1956)
.+..+++.++.+|++..+.+.+|..+...|++++|++.+-.+++.+++. ..+...+-.++..+|.-+.....|+
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 4566778888888888888888888888888888888888888887654 4555666666666665443333333
No 324
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.87 E-value=5.8 Score=44.43 Aligned_cols=85 Identities=15% Similarity=0.048 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...+..+..+-...++.+++..++...--+.|.. +.+-..-|.++...|++.+|+..++.+....|..+.+--.++.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~---~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEF---PELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCc---hHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3344455555556666666666666666666666 5666666666666666666666666666666666666666666
Q ss_pred HHHHCCCh
Q psy8682 1806 SLANGNRP 1813 (1956)
Q Consensus 1806 ay~qlGry 1813 (1956)
|+..+|+.
T Consensus 87 CL~~~~D~ 94 (160)
T PF09613_consen 87 CLYALGDP 94 (160)
T ss_pred HHHHcCCh
Confidence 66655554
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.68 E-value=5.8 Score=46.42 Aligned_cols=70 Identities=13% Similarity=0.053 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNA-------ARQCPS--Q-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekA-------Lel~P~--n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~ 1793 (1956)
..+..++.+|.+|...|+.+.....+++| +..... . .....+.+.+|.+..+.|++++|+.+|.+++...
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 45667788888888888865544444444 433222 1 1224567777888888888888888888877654
No 326
>KOG1839|consensus
Probab=87.61 E-value=3.2 Score=58.09 Aligned_cols=178 Identities=17% Similarity=0.122 Sum_probs=129.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHH------HHH-HHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAIL------YLE-AAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE------- 1669 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe------~fe-kALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd------- 1669 (1956)
++...+..|......|.+.+|.+ ++. ....+.|..+..+..++.++...+++++|+..-.++.-+.
T Consensus 931 ~a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 931 EAKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 45667778888888888887777 555 2234578889999999999999999999999888775432
Q ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1670 -PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1670 -PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
|+....+.+++......++...|+..+.++..+ ..-.... ..|..+....+++.++...++++.|+.+
T Consensus 1011 s~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l----------~~Ls~ge-~hP~~a~~~~nle~l~~~v~e~d~al~~ 1079 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL----------KLLSSGE-DHPPTALSFINLELLLLGVEEADTALRY 1079 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh----------hccccCC-CCCchhhhhhHHHHHHhhHHHHHHHHHH
Confidence 455667889998888889999999999998876 1111111 1355566667888888899999999999
Q ss_pred HHHHHHhCCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1749 YLNAARQCPSQ-----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1749 LekALel~P~n-----~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
++.|+.....- -.....+..+++++..++++..|....+....+
T Consensus 1080 le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~i 1128 (1236)
T KOG1839|consen 1080 LESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGI 1128 (1236)
T ss_pred HHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHH
Confidence 99998864322 112445666677777777777776666655543
No 327
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.57 E-value=5.5 Score=44.66 Aligned_cols=87 Identities=18% Similarity=0.062 Sum_probs=78.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
-...++.....-...++.+++...+..+--+.|..+..-..-|.++...|++.+|+..++.+....|..+.+--.++.|+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL 88 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence 34577788888888999999999999999999999999999999999999999999999999998899988888889998
Q ss_pred HHcCCHH
Q psy8682 1684 TNEACLH 1690 (1956)
Q Consensus 1684 ~~lGdyd 1690 (1956)
..+|+.+
T Consensus 89 ~~~~D~~ 95 (160)
T PF09613_consen 89 YALGDPS 95 (160)
T ss_pred HHcCChH
Confidence 8887654
No 328
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=87.45 E-value=2.4 Score=53.42 Aligned_cols=132 Identities=13% Similarity=-0.016 Sum_probs=107.3
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
....|+.-.|-.-+..+++..|.. +......+.++..+|.|+.|...+.-+-..-.....+...+-..+..+|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~---p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQD---PVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCC---chhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence 346789999999999999999988 77888889999999999999998877766555555666667778889999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
|...-.-.+...-+++++..--+....++|-+++|..++++.+.++|....+|.+
T Consensus 376 a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 376 ALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 9998888887666666666666666777888999999999999999875544433
No 329
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=87.41 E-value=21 Score=43.17 Aligned_cols=172 Identities=17% Similarity=0.127 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC- 1756 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~- 1756 (1956)
.++.+++..|+|.+|+......+.. ...+-. -+.....+..-..+|....+..++...+..|-...
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~E----------lKk~DD---K~~Li~vhllESKvyh~irnv~KskaSLTaArt~An 196 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHE----------LKKYDD---KINLITVHLLESKVYHEIRNVSKSKASLTAARTLAN 196 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHH----------HHhhcC---ccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhh
Confidence 4567788888888888877766544 111110 01233444555667777777777766666554332
Q ss_pred ----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH---HHCCChHHHHHHHH--HHH
Q psy8682 1757 ----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP---DDSRLWNRLGASL---ANGNRPEEAVEAYH--TAL 1824 (1956)
Q Consensus 1757 ----P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P---dnaeA~~nLG~ay---~qlGryeEAie~ye--KAL 1824 (1956)
|.. ..+..-..-|..++.-.+|.-|-.+|-++++-.. .+..+...|-..+ ...++.++-...++ .++
T Consensus 197 s~YCPpq-lqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMlN~~~evk~vl~~K~t~ 275 (421)
T COG5159 197 SAYCPPQ-LQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIMLNRREEVKAVLRNKNTL 275 (421)
T ss_pred ccCCCHH-HHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHhhHHHHHHHHccchhH
Confidence 221 1222333346666777888888888888886432 2333333222111 22333333322221 222
Q ss_pred h-hCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhcCC
Q psy8682 1825 Q-LSPGFVRARYNLGITCV--HLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1825 e-L~PdnaeA~~~LA~ay~--klGdyEEAie~yekALeLdPd 1863 (1956)
+ .+....++....+.++. .+.++..|+..|..-+..+|-
T Consensus 276 ~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~ 317 (421)
T COG5159 276 KHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSF 317 (421)
T ss_pred hhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHH
Confidence 2 23334555555666553 344677777777766655443
No 330
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.29 E-value=76 Score=44.80 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=73.1
Q ss_pred ccccCCCCcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHH-HHHHHHhcCCCCCChhh
Q psy8682 1498 ASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSH-WKEMTESLGSGESLPHQ 1576 (1956)
Q Consensus 1498 aslgq~~v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~-we~l~kr~~s~~~~a~~ 1576 (1956)
-+.....|++++-+-+.||+|+..+......- +. ..+++...| ++.-. .+.....+ +.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~--~~~~~~~~~~~~~~-----~~-- 532 (932)
T PRK13184 474 LRVSCLAVPDAFLAEKLYDQALIFYRRIRESF---PG---------RKEGYEAQF--RLGITLLEKASEQG-----DP-- 532 (932)
T ss_pred eeeecccCcHHHHhhHHHHHHHHHHHHHhhcC---CC---------cccchHHHH--HhhHHHHHHHHhcC-----Ch--
Confidence 34456678999999999999999976432111 11 111222222 11211 12211111 11
Q ss_pred hhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1577 WFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEV 1641 (1956)
Q Consensus 1577 WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeA 1641 (1956)
..|.+|+.. |++... .+..|. .|+..|.+|...|+|++-+++|.-|++..|.++..
T Consensus 533 --~~~~~~~~~--~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 533 --RDFTQALSE--FSYLHG-GVGAPL----EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred --HHHHHHHHH--HHHhcC-CCCCch----HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 578888887 665442 445555 89999999999999999999999999999987653
No 331
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.91 E-value=18 Score=41.20 Aligned_cols=96 Identities=9% Similarity=0.023 Sum_probs=42.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQS-IDPDVQNGLGVLFNLSDEYDKAVDCFRSAL-QVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~-~~a~a~~~LG~ly~~lGdyeEAie~fekAL-el~PdnaeA~~nLG~ay 1807 (1956)
...|.+..+.|+...|...|.++-.-.|.-. ..-.+...-+.++...|-|++-....+..- .-+|-...+.-.||.+-
T Consensus 98 mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa 177 (221)
T COG4649 98 MRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAA 177 (221)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHH
Confidence 3344555555555555555555544332210 001122333344445555554443333211 11222334444555555
Q ss_pred HHCCChHHHHHHHHHHHh
Q psy8682 1808 ANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALe 1825 (1956)
.+.|++..|.+.|.....
T Consensus 178 ~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 178 YKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HhccchHHHHHHHHHHHc
Confidence 556666666666555443
No 332
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=86.73 E-value=3.2 Score=43.79 Aligned_cols=106 Identities=17% Similarity=0.153 Sum_probs=61.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlG 1811 (1956)
+|..++..|++-+|+++.+..+...+++......+..-|.++.. .|......+...-+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~------------lA~~ten~d~k~~yLl-------- 61 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYK------------LAKKTENPDVKFRYLL-------- 61 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHH------------HHHhccCchHHHHHHH--------
Confidence 45666777777777777777777766651112334444444432 2222222222222222
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.|+++|.++..+.|..+..++.||.-+....-|+++..-.+++|.+
T Consensus 62 ---~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 62 ---GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred ---HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 3667777777777777777777777665555666676666666654
No 333
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=86.45 E-value=7.2 Score=50.92 Aligned_cols=127 Identities=19% Similarity=0.110 Sum_probs=89.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNG--LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~--LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
+...-++..+...+.+++.+ +..+.. +...+...+....+...+..++..+|++..+..+||.+....|....+.
T Consensus 45 ~~~~~~~~a~~~~~~~~~~~---~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~ 121 (620)
T COG3914 45 GLQALAIYALLLGIAINDVN---PELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLAL 121 (620)
T ss_pred CchhHHHHHHHccCccCCCC---HHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHH
Confidence 33333555666666666666 444222 4666667777778888888888888888888888888887777666666
Q ss_pred HHHHH-HHhhCCCcHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1818 EAYHT-ALQLSPGFVRARYNL------GITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1818 e~yeK-ALeL~PdnaeA~~~L------A~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
..+.. +....|++......+ +.....+|+..++.....++..+.|.++.+..
T Consensus 122 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~ 180 (620)
T COG3914 122 ADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLG 180 (620)
T ss_pred HHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHh
Confidence 55554 777778776655444 77777888888888888888888888765443
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=85.78 E-value=1.2 Score=33.16 Aligned_cols=32 Identities=25% Similarity=0.555 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhhCCC
Q psy8682 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764 (1956)
Q Consensus 733 dV~~~La~Ly~~sgeyEkArelFerALkkfP~ 764 (1956)
+++..+|.+|...+++++|..+|+++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 57899999999999999999999999998775
No 335
>KOG3807|consensus
Probab=85.68 E-value=35 Score=41.99 Aligned_cols=142 Identities=12% Similarity=0.077 Sum_probs=79.1
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACL 1689 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdy 1689 (1956)
.+-....+..+..+-+.....+++++|..+.++..++.-- ..-..+|.+.+++|++... .-++..+.....|..
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e----~~yr~sqq~qh~~~~ 262 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAGE----TIYRQSQQCQHQSPQ 262 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHH----HHHhhHHHHhhhccc
Confidence 3334445566677778888889999999888888876532 2345677888888876532 111222212222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH
Q psy8682 1690 HDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL 1769 (1956)
Q Consensus 1690 dEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~L 1769 (1956)
.+|. .+. +.+ -....-..+|.+..++|+..+|.+.++...+..|-. ....++-++
T Consensus 263 ~da~------~rR----Dtn--------------vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~-t~lniheNL 317 (556)
T KOG3807|consen 263 HEAQ------LRR----DTN--------------VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLL-TMLNIHENL 317 (556)
T ss_pred hhhh------hhc----ccc--------------hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHH-HHHHHHHHH
Confidence 1111 111 111 112233457788888888888888888887766643 122344445
Q ss_pred HHHHHHcCCHHHH
Q psy8682 1770 GVLFNLSDEYDKA 1782 (1956)
Q Consensus 1770 G~ly~~lGdyeEA 1782 (1956)
-.++..+.-|.+.
T Consensus 318 iEalLE~QAYADv 330 (556)
T KOG3807|consen 318 LEALLELQAYADV 330 (556)
T ss_pred HHHHHHHHHHHHH
Confidence 4554444444333
No 336
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=85.33 E-value=2.7 Score=38.73 Aligned_cols=35 Identities=26% Similarity=0.187 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA 1675 (1956)
.++.+|..+++.|+|.+|..+.+.+++.+|++..+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 34455555555555555555555555555555444
No 337
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=84.88 E-value=2.9 Score=38.53 Aligned_cols=43 Identities=21% Similarity=0.238 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGIS 1648 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~a 1648 (1956)
+.+|.+|..+++.|+|++|..+.+.+++..|++..+......+
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 4678999999999999999999999999999998877665444
No 338
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=84.77 E-value=7.2 Score=44.24 Aligned_cols=102 Identities=12% Similarity=0.001 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.++..+|..|...|+.+.|++.|.++... ... .....+..+++..+....+++..+..++.++-
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~----~~~------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY----CTS------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh----cCC------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 46677788888888888888888877665 111 23445566777777777788888777777775
Q ss_pred HhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1754 RQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1754 el~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
...... .........-|..+...++|.+|...|-.++.
T Consensus 101 ~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 101 SLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence 543221 00112233345555566666666666655543
No 339
>KOG1310|consensus
Probab=84.27 E-value=2.3 Score=54.34 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS---DEYDKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l---GdyeEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
..-|.-.+..+....|+..|.+++...|.. ...+.+.+.++++. |+.-.|+.....|++++|....+++.|+.+
T Consensus 378 ~~egnd~ly~~~~~~~i~~~s~a~q~~~~~---~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 378 KTEGNDGLYESIVSGAISHYSRAIQYVPDA---IYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred HhhccchhhhHHHHHHHHHHHHHhhhccch---hHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence 333333334444455555555555555554 44444555444433 233344444445555555555555555555
Q ss_pred HHHCCChHHHHHHHHHHHhhCC
Q psy8682 1807 LANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1807 y~qlGryeEAie~yeKALeL~P 1828 (1956)
+..++++.+|+.+...+....|
T Consensus 455 L~el~r~~eal~~~~alq~~~P 476 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQMSFP 476 (758)
T ss_pred HHHHhhHHHhhhhHHHHhhcCc
Confidence 5555555555555544444444
No 340
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.15 E-value=2.4 Score=48.22 Aligned_cols=113 Identities=16% Similarity=0.108 Sum_probs=78.7
Q ss_pred ccCchhHHHhhhcccccCCCCCCCCCCCCCcccccccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCC
Q psy8682 649 ITGIDPVITIFLSEFFSKPVDTPGQESNPRPSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 728 (1956)
Q Consensus 649 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~ 728 (1956)
.+|......+..-|. .++.+.........+.+-+..-.|..|.+.+.-... -.+....+...+..++.++..|
T Consensus 70 ~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~l~~~~~~a~~~l~~~P-- 142 (193)
T PF11846_consen 70 LTDYHTNEQLTRFER-SRPADIELLQIVGNPWLFRERPLFDYYAALLLLARL----PPDPEMLEAYIEWAERLLRRRP-- 142 (193)
T ss_pred HHHHHHHHHHHHhcc-CCccchHHHhcccchhHHhhHhhHHHHHHHHHhhcC----CCCHHHHHHHHHHHHHHHHhCC--
Confidence 344555555544443 244444444555555555555577777776553332 2333456777788888888888
Q ss_pred CCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCC-CHHHHH
Q psy8682 729 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-FTELLV 770 (1956)
Q Consensus 729 ~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~-d~~IWl 770 (1956)
++.++.+++.++...|+.++|++...++...+|. .+..|.
T Consensus 143 --~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~~~~~~~ 183 (193)
T PF11846_consen 143 --DPNVYQRYALALALLGDPEEARQWLARARRLYPADEFAAAQ 183 (193)
T ss_pred --CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 6999999999999999999999999999999994 467775
No 341
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=83.70 E-value=6.7 Score=44.48 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
..++..+|..|.+.|++++|++.|.++.+.........+.+..+..+....+++..+..+..++-..
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 3455666677777777777777777666544332123445555666666666666666666665543
No 342
>KOG1310|consensus
Probab=83.29 E-value=3.3 Score=52.95 Aligned_cols=90 Identities=20% Similarity=0.223 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC---CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852 (1956)
Q Consensus 1776 lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql---GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie 1852 (1956)
.+....|+..|.+++...|.....+.+.+.++++. |+.-.|+.....|++++|....+++.|+.++..++++.+|+.
T Consensus 387 ~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~ 466 (758)
T KOG1310|consen 387 ESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALS 466 (758)
T ss_pred hHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhh
Confidence 34556789999999999999999999999998875 566778888888999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCh
Q psy8682 1853 HFLTALNQQAATH 1865 (1956)
Q Consensus 1853 ~yekALeLdPdn~ 1865 (1956)
+...+....|.+.
T Consensus 467 ~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 467 CHWALQMSFPTDV 479 (758)
T ss_pred hHHHHhhcCchhh
Confidence 9998888888543
No 343
>KOG4814|consensus
Probab=82.90 E-value=60 Score=43.18 Aligned_cols=96 Identities=10% Similarity=0.088 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
++.+-|.-+++..+|..+++.|...+...|.+ +....+++.||..+.+.+.|.+++++|-+.+|.++-....+-
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~ 435 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLML 435 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHH
Confidence 34445556667778888888888877766543 345667777888888888888888888888887777777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeL 1860 (1956)
.+....|.-++|+.+..+....
T Consensus 436 ~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 436 QSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHhcchHHHHHHHHHHHhh
Confidence 7777777778887777666544
No 344
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=82.36 E-value=7.2 Score=49.43 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=91.7
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEAL 1693 (1956)
.....|+...|-.-+..++...|.++......+.++..+|+|+.|...+..+-..-..-..+...+-.....+|++++|.
T Consensus 298 k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 298 KQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred HHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34567999999999999999999999888889999999999999988876655544333345555666677888888888
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
....-++.. .- +..+...-.|.....+|-+++|..+.++.+.++|..
T Consensus 378 s~a~~~l~~----ei---------------e~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 378 STAEMMLSN----EI---------------EDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhcc----cc---------------CChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 777666654 10 122233333445556788888888888888888765
No 345
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=82.29 E-value=1.7 Score=50.83 Aligned_cols=58 Identities=26% Similarity=0.424 Sum_probs=37.2
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc
Q psy8682 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830 (1956)
Q Consensus 1773 y~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn 1830 (1956)
....++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+
T Consensus 5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 3455666666666666666666666666666666666666666666666666666654
No 346
>KOG3364|consensus
Probab=81.76 E-value=7.1 Score=42.67 Aligned_cols=75 Identities=23% Similarity=0.327 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHHHHcC---ChHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQG---DLPSAILYLEAAAK-QEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMA 1678 (1956)
Q Consensus 1604 daeall~LG~aylk~G---dydEAIe~fekALe-ldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~ 1678 (1956)
..+..+++|.++.... +..+.+.+++..++ .+|. .-+..++|+..+++.++|++|+.+.+..++..|++..+...
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 5678899999988765 56788999999996 4453 45689999999999999999999999999999999877543
No 347
>KOG3783|consensus
Probab=81.49 E-value=72 Score=41.94 Aligned_cols=230 Identities=10% Similarity=-0.029 Sum_probs=134.3
Q ss_pred hhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1594 lqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPd--naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
....|+++. -.+..|..+...|+.+.|+..++..+...-. ..-.++.+|.++.-+.+|.+|-..+....+...-
T Consensus 260 ~~~~p~ga~----wll~~ar~l~~~g~~eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~desdW 335 (546)
T KOG3783|consen 260 RKRYPKGAL----WLLMEARILSIKGNSEAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDESDW 335 (546)
T ss_pred HHhCCCCcc----HHHHHHHHHHHcccHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhhh
Confidence 334455555 6777888888888989999999888761111 1336778899999999999999999988877644
Q ss_pred CHHHHHHHH-HHHH--------HcCCHHHHHHHHHHHHhc---CCCCCCCc-------hhhhhhcCcchhhhhHHHHHHH
Q psy8682 1672 NLEALMAIS-ICFT--------NEACLHDALDTLKDKIRP---GQESNPRP-------SAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1672 naeAl~~LA-~aY~--------~lGdydEALe~leKALel---g~e~dPd~-------eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
..-.|..++ -++. ..|+-++|..+++....+ +..+.|-. ..|.......-..-.+..++.+
T Consensus 336 S~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El 415 (546)
T KOG3783|consen 336 SHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANAGKNLPLEKFIVRKVERFVKRGPLNASILLASPYYEL 415 (546)
T ss_pred hHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHhccccccccccccchHHHH
Confidence 433443343 2232 123555555444443332 11112220 0010000000000001123334
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHHhCCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CC----CHHHH
Q psy8682 1733 RSPLSS--REIHQQVLSLYLNAARQCPS--Q-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR---PD----DSRLW 1800 (1956)
Q Consensus 1733 A~ay~~--lGdyeEAle~LekALel~P~--n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~---Pd----naeA~ 1800 (1956)
+..+.. .....+.. -++..++ .|. + ....-.+..+|.++..+|+...|..+|..+++.. .. .|.++
T Consensus 416 ~Y~Wngf~~~s~~~l~-k~~~~~~-~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~ 493 (546)
T KOG3783|consen 416 AYFWNGFSRMSKNELE-KMRAELE-NPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFAL 493 (546)
T ss_pred HHHHhhcccCChhhHH-HHHHHHh-ccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHH
Confidence 433332 12222222 1111111 121 1 0123456778999999999999999999988431 12 36899
Q ss_pred HHHHHHHHHCCC-hHHHHHHHHHHHhhCCC
Q psy8682 1801 NRLGASLANGNR-PEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1801 ~nLG~ay~qlGr-yeEAie~yeKALeL~Pd 1829 (1956)
+.+|.+|..+|. ..+|..++.+|-+...+
T Consensus 494 YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 494 YELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 999999999998 99999999999887644
No 348
>KOG3807|consensus
Probab=81.23 E-value=76 Score=39.27 Aligned_cols=194 Identities=14% Similarity=0.109 Sum_probs=107.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhh
Q psy8682 1644 SLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLT 1723 (1956)
Q Consensus 1644 ~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~ 1723 (1956)
.+-....+..+..+-++....|++++|+.+.++..||.-- .--..+|.+.++++++.+ .
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~----e--------------- 247 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEINNECATAYVLLAEEE--ATTIVDAERLFKQALKAG----E--------------- 247 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHH----H---------------
Confidence 3444445556666778888899999999999988887532 234668888888888761 0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS--RLWN 1801 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna--eA~~ 1801 (1956)
..++..+.....|...+|. .+.+ .+ ....+...++.+..++|+..+|++.++...+-.|-.. .+.-
T Consensus 248 ----~~yr~sqq~qh~~~~~da~------~rRD-tn-vl~YIKRRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lnihe 315 (556)
T KOG3807|consen 248 ----TIYRQSQQCQHQSPQHEAQ------LRRD-TN-VLVYIKRRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHE 315 (556)
T ss_pred ----HHHhhHHHHhhhccchhhh------hhcc-cc-hhhHHHHHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHH
Confidence 0111112222222222221 1222 22 2344556789999999999999999999887766322 2344
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhh-CCCcHHHHHHHHH-------------HHHHcCC---HHHHHHHHHHHHHhcCCC
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQL-SPGFVRARYNLGI-------------TCVHLGA---NTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL-~PdnaeA~~~LA~-------------ay~klGd---yEEAie~yekALeLdPdn 1864 (1956)
+|-.++....-|.+....+-+.-.+ -|..+...+.-+. ...+.|- -..|++...+|++.+|.-
T Consensus 316 NLiEalLE~QAYADvqavLakYDdislPkSA~icYTaALLK~RAVa~kFspd~asrRGLS~AE~~AvEAihRAvEFNPHV 395 (556)
T KOG3807|consen 316 NLLEALLELQAYADVQAVLAKYDDISLPKSAAICYTAALLKTRAVSEKFSPETASRRGLSTAEINAVEAIHRAVEFNPHV 395 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccCcchHHHHHHHHHHHHHHHHhhcCchhhhhccccHHHHHHHHHHHHHhhcCCCC
Confidence 4544444444443333322222221 1222211111110 1111111 235888999999999997
Q ss_pred hhchhc
Q psy8682 1865 HDGLTP 1870 (1956)
Q Consensus 1865 ~dA~~~ 1870 (1956)
|.-+..
T Consensus 396 PkYLLE 401 (556)
T KOG3807|consen 396 PKYLLE 401 (556)
T ss_pred cHHHHH
Confidence 764443
No 349
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.13 E-value=36 Score=37.99 Aligned_cols=83 Identities=12% Similarity=-0.012 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
....+...-...++.+++..++...--+.|+. +.+...-|.++...|++.+|+..++....-.+..+...-.++.|+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~---~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL 88 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNL---KELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCL 88 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCc---cccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHH
Confidence 33444444445677777777777666677776 666666677777777777777777777666666666666666666
Q ss_pred HHCCCh
Q psy8682 1808 ANGNRP 1813 (1956)
Q Consensus 1808 ~qlGry 1813 (1956)
..+|+.
T Consensus 89 ~al~Dp 94 (153)
T TIGR02561 89 NAKGDA 94 (153)
T ss_pred HhcCCh
Confidence 666654
No 350
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=80.69 E-value=15 Score=42.98 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred hHHHHHhchhhHhHh---hhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHH-------HHhCC------CCHHHHH
Q psy8682 1580 DFSRNQRSSVSMHEY---TFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA-------AKQEP------DNAEVWL 1643 (1956)
Q Consensus 1580 dYeeALs~s~ydKAl---qL~p~NP~~daeall~LG~aylk~GdydEAIe~fekA-------LeldP------dnaeAl~ 1643 (1956)
.+++|+.. |.-|+ ++....+...+..++.+|..|...|+-+....++++| +.... +....++
T Consensus 92 t~~~ai~~--YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 92 TLEEAIES--YKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CHHHHHHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 44555554 33333 2223344446778889999999999855544444444 43322 1245677
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1644 SLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1644 ~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
.+|.+..+.|++++|+..|.+++...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 78888888888888888888877654
No 351
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=80.56 E-value=26 Score=45.45 Aligned_cols=130 Identities=14% Similarity=0.131 Sum_probs=62.8
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
......|+++++..+.+.. ++-|.- ..-...++..+.+.|.++.|+... .+++..+.|| ..+|+.+.
T Consensus 269 k~av~~~d~~~v~~~i~~~-~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~--------~D~~~rFeLA---l~lg~L~~ 336 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAAS-NLLPNIPKDQGQSIARFLEKKGYPELALQFV--------TDPDHRFELA---LQLGNLDI 336 (443)
T ss_dssp HHHHHTT-HHH-----HHH-HTGGG--HHHHHHHHHHHHHTT-HHHHHHHS--------S-HHHHHHHH---HHCT-HHH
T ss_pred HHHHHcCChhhhhhhhhhh-hhcccCChhHHHHHHHHHHHCCCHHHHHhhc--------CChHHHhHHH---HhcCCHHH
Confidence 3344577888877776422 111222 233555566666667666665543 2334444444 35677777
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
|.+..++. .....|..||.....+|+++-|.++|.++ .+ +..|..
T Consensus 337 A~~~a~~~------------------------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~-----~d------~~~L~l 381 (443)
T PF04053_consen 337 ALEIAKEL------------------------DDPEKWKQLGDEALRQGNIELAEECYQKA-----KD------FSGLLL 381 (443)
T ss_dssp HHHHCCCC------------------------STHHHHHHHHHHHHHTTBHHHHHHHHHHC-----T-------HHHHHH
T ss_pred HHHHHHhc------------------------CcHHHHHHHHHHHHHcCCHHHHHHHHHhh-----cC------ccccHH
Confidence 66543211 11224566677777777777777776664 22 344555
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy8682 1772 LFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekA 1789 (1956)
+|...|+.+.-.+..+.|
T Consensus 382 Ly~~~g~~~~L~kl~~~a 399 (443)
T PF04053_consen 382 LYSSTGDREKLSKLAKIA 399 (443)
T ss_dssp HHHHCT-HHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 566666655444444433
No 352
>KOG4814|consensus
Probab=80.33 E-value=10 Score=49.80 Aligned_cols=98 Identities=13% Similarity=0.142 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMA 1678 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~ 1678 (1956)
...+.+.|..+++..+|..+++.|...+...|.+ +.....++.||..+.+.+.|.++++.|-+.+|.++-....
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~ 433 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL 433 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 3467788999999999999999999999877654 4567889999999999999999999999999999988888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1679 ISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1679 LA~aY~~lGdydEALe~leKALel 1702 (1956)
+-.+....+.-++|+.+.......
T Consensus 434 ~~~~~~~E~~Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 434 MLQSFLAEDKSEEALTCLQKIKSS 457 (872)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhh
Confidence 888888999999999998887665
No 353
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=79.90 E-value=46 Score=44.01 Aligned_cols=127 Identities=21% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMA--ISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~--LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
|+..+...+.+++.++..+.. +...+...+....+......++.. +|. ...+..+++.+
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~----~~~---------------~~~~~~~L~~a 110 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSV----NPE---------------NCPAVQNLAAA 110 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhc----Ccc---------------cchHHHHHHHH
Confidence 444444445555555554222 344455555555555555555555 333 33345555555
Q ss_pred HHhcCCHHHHHHHHHH-HHHhCCCCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1736 LSSREIHQQVLSLYLN-AARQCPSQSIDPDVQNGL------GVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1736 y~~lGdyeEAle~Lek-ALel~P~n~~~a~a~~~L------G~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
....|....+...+.. +....|.+ ......+ +.....+|+..++.....++..+.|.++.+...+...
T Consensus 111 le~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 111 LELDGLQFLALADISEIAEWLSPDN---AEFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HHHhhhHHHHHHHHHHHHHhcCcch---HHHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 5555544444444333 55555555 3333333 5555555666666666666666666655544444443
No 354
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=79.53 E-value=2.4 Score=49.65 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=54.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
....+.++.+.|.+.|.+++.+.|.....|+.+|....+.|+++.|.+.|++.++++|.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3456778999999999999999999999999999999999999999999999999998764
No 355
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.79 E-value=16 Score=40.70 Aligned_cols=83 Identities=14% Similarity=-0.029 Sum_probs=71.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+..+...-...++.+++...+...--+.|+.+.+-..-|.++...|++.+|+..++...+-.+..+.+.-.++.|+..+|
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34444445568999999999999888999999999999999999999999999999999888888888888899999888
Q ss_pred CHH
Q psy8682 1846 ANT 1848 (1956)
Q Consensus 1846 dyE 1848 (1956)
+.+
T Consensus 93 Dp~ 95 (153)
T TIGR02561 93 DAE 95 (153)
T ss_pred ChH
Confidence 853
No 356
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.85 E-value=4.4 Score=33.65 Aligned_cols=26 Identities=35% Similarity=0.399 Sum_probs=11.5
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1800 WNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1800 ~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+.++|.+|..+|++++|+.++++++.
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 44444444444444444444444443
No 357
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=76.79 E-value=4.8 Score=33.45 Aligned_cols=33 Identities=24% Similarity=0.178 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..++.+||.+|..+|++++|..++++++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 357889999999999999999999999987543
No 358
>KOG2422|consensus
Probab=76.47 E-value=58 Score=43.00 Aligned_cols=170 Identities=12% Similarity=0.030 Sum_probs=110.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC-
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQ- 1759 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n- 1759 (1956)
...|++|...|.-++.. .+|+ ....+ ....|-....++.++.++..+|+.+-|..+..+++=. .|..
T Consensus 251 s~sYeqaq~~F~~av~~---~d~n---~v~~l-L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~ 323 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIV---HDPN---NVLIL-LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFI 323 (665)
T ss_pred chHHHHHHHHHHHHHhh---cCCc---ceeee-eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccc
Confidence 45577888888888776 2343 11111 1124677888999999999999999999988888631 2211
Q ss_pred --------C----CCHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-HCCChHHHHHHHHH
Q psy8682 1760 --------S----IDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-DSRLWNRLGASLA-NGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1760 --------~----~~a~---a~~~LG~ly~~lGdyeEAie~fekALel~Pd-naeA~~nLG~ay~-qlGryeEAie~yeK 1822 (1956)
. ..-. +++..-..+.+.|-+..|.++++-.++++|. ++.+...+..+|. +..+|+=-+..++.
T Consensus 324 ~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~ 403 (665)
T KOG2422|consen 324 PFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNE 403 (665)
T ss_pred cccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 0 0011 1222233455789999999999999999998 8776666655554 45556555555554
Q ss_pred H-----HhhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhcCC
Q psy8682 1823 A-----LQLSPGFVRARYNLGITCVHLGA---NTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1823 A-----LeL~PdnaeA~~~LA~ay~klGd---yEEAie~yekALeLdPd 1863 (1956)
. +..-|+.. .-..+|..|..... ...|...+.+|+...|.
T Consensus 404 ~e~~n~l~~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P~ 451 (665)
T KOG2422|consen 404 PENMNKLSQLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHHPL 451 (665)
T ss_pred HHhhccHhhcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhCcH
Confidence 4 22334433 23345666666555 67799999999999884
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=74.15 E-value=3e+02 Score=36.41 Aligned_cols=202 Identities=10% Similarity=0.037 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.+..+-.++-......-....+.+++... .+-.+++.++.+|... ..++-....++.++.+-++...-..|+..|..
T Consensus 68 ~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~yEk- 144 (711)
T COG1747 68 CLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKYEK- 144 (711)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHHHH-
Confidence 45555555555555666667777777664 4677899999999998 56677888999999998888888888887766
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
++...+..+|.+++.. .-|. ..+...++ ..+- .+-..+.+.-+....+.-...... ....
T Consensus 145 ik~sk~a~~f~Ka~yr---fI~~~q~~~i~evW------------eKL~--~~i~dD~D~fl~l~~kiqt~lg~~-~~~V 206 (711)
T COG1747 145 IKKSKAAEFFGKALYR---FIPRRQNAAIKEVW------------EKLP--ELIGDDKDFFLRLQKKIQTKLGEG-RGSV 206 (711)
T ss_pred hchhhHHHHHHHHHHH---hcchhhhhhHHHHH------------HHHH--HhccccHHHHHHHHHHHHHhhccc-hHHH
Confidence 8899999999999865 0121 00011111 1100 011223333333333332222211 0111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--------------------CCChHHHHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN--------------------GNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q--------------------lGryeEAie~yeKAL 1824 (1956)
++-.+-.-|....++.+|++.+...++.+..+..+.-++..-+.. -.++-+|+.-|++.+
T Consensus 207 l~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~l~dFek~m 286 (711)
T COG1747 207 LMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEALNDFEKLM 286 (711)
T ss_pred HHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHHHHHHHHHh
Confidence 122222334455667777777777777766666555554443333 345666777777766
Q ss_pred hhCCC
Q psy8682 1825 QLSPG 1829 (1956)
Q Consensus 1825 eL~Pd 1829 (1956)
..+..
T Consensus 287 ~f~eG 291 (711)
T COG1747 287 HFDEG 291 (711)
T ss_pred eeccC
Confidence 65443
No 360
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=73.82 E-value=73 Score=38.92 Aligned_cols=201 Identities=10% Similarity=-0.010 Sum_probs=100.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1609 FALGQEKLRQGDLPSAILYLEAAAKQEP--------DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS 1680 (1956)
Q Consensus 1609 l~LG~aylk~GdydEAIe~fekALeldP--------dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA 1680 (1956)
+.+|+-..+.+++++|+..|.+.+...- ....+...++.+|...|++..--+.....-+ ++...+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre-------~m~~ft 79 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSRE-------AMEDFT 79 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHH-------HHHHhc
Confidence 6778888888889999999988886521 1233567777888888877654444333222 222111
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhh----------cCcc-hhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD----------ALPS-KLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~L----------l~~~-Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
. .+..+..+..++.-+ ..|+ ..... .... +.--....-..++.++++.|.|.+|+...
T Consensus 80 k--------~k~~KiirtLiekf~-~~~d--sl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalI 148 (421)
T COG5159 80 K--------PKITKIIRTLIEKFP-YSSD--SLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALI 148 (421)
T ss_pred c--------hhHHHHHHHHHHhcC-CCCc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 1 111122222222200 0111 00000 0000 00001111233566677777777777777
Q ss_pred HHHHHh---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHH--HHHHHHHHHCCChHHHHHH
Q psy8682 1750 LNAARQ---CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-----PDDSRLW--NRLGASLANGNRPEEAVEA 1819 (1956)
Q Consensus 1750 ekALel---~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-----PdnaeA~--~nLG~ay~qlGryeEAie~ 1819 (1956)
...+.. ..+...-..++..-..+|....+..++...+..|-... |....+. ..-|...+.-.+|.-|-.+
T Consensus 149 n~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SY 228 (421)
T COG5159 149 NPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSY 228 (421)
T ss_pred HHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHH
Confidence 666532 11111123455555666777777766666665554331 2222222 2225555566677777777
Q ss_pred HHHHHhhC
Q psy8682 1820 YHTALQLS 1827 (1956)
Q Consensus 1820 yeKALeL~ 1827 (1956)
|-++++-.
T Consensus 229 F~Ea~Egf 236 (421)
T COG5159 229 FIEALEGF 236 (421)
T ss_pred HHHHHhcc
Confidence 77776654
No 361
>KOG3364|consensus
Probab=72.63 E-value=17 Score=39.93 Aligned_cols=72 Identities=14% Similarity=0.183 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcC---CHHHHHHHHHHHHH-hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1728 HTLTFRSPLSSRE---IHQQVLSLYLNAAR-QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801 (1956)
Q Consensus 1728 a~lnLA~ay~~lG---dyeEAle~LekALe-l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~ 1801 (1956)
..+++|.++.... +..+.+.+++..++ -.|.. ..+..+.|+..+++.++|++|+.+.+..++..|++..+..
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~--rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~ 109 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPER--RRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALE 109 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCccc--chhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence 4556666666443 44567777777776 33332 4556777788888888888888888888888887766543
No 362
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=72.18 E-value=13 Score=46.98 Aligned_cols=139 Identities=16% Similarity=0.060 Sum_probs=94.5
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----C----------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-----S----------IDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-----~----------~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...+.+.-|..++++++|..|..-|+.++++..+- + ....+-..+..||..+++.+-|+....+.
T Consensus 175 wl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrs 254 (569)
T PF15015_consen 175 WLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRS 254 (569)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhh
Confidence 33444556888889999999999999999987753 0 11224456788888999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ---LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe---L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+.++|.+..-+...|.++..+.+|.+|.+.+--+.- +......-...+...|.+ ...++|+...+....
T Consensus 255 I~lnP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq--------amiEeAiTr~esfsV 326 (569)
T PF15015_consen 255 INLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ--------AMIEEAITRAESFSV 326 (569)
T ss_pred hhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH--------HHHHHHHhcccceeE
Confidence 999998888888888899888898888776655432 222222223333333332 235566666666554
Q ss_pred chhcc
Q psy8682 1867 GLTPH 1871 (1956)
Q Consensus 1867 A~~~L 1871 (1956)
.|...
T Consensus 327 mYtPf 331 (569)
T PF15015_consen 327 MYTPF 331 (569)
T ss_pred Eeecc
Confidence 44443
No 363
>KOG0529|consensus
Probab=71.60 E-value=60 Score=41.42 Aligned_cols=131 Identities=11% Similarity=0.077 Sum_probs=102.5
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC----
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDE--YDKAVDCFRSALQVRPDDSRLWNRLGASLANGN---- 1811 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGd--yeEAie~fekALel~PdnaeA~~nLG~ay~qlG---- 1811 (1956)
.+.-.++-+.+...+++.+|+. ..+|+.+..++.+.+. +..-++.++++++.+|.+..+|...-.+.....
T Consensus 87 k~~~ld~eL~~~~~~L~~npks---Y~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~ 163 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKS---YGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRN 163 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchh---HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccc
Confidence 3346677788899999999998 8899999999887664 678899999999999999888876655544333
Q ss_pred ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH------cCC------HHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVH------LGA------NTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1812 ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k------lGd------yEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
...+=+++..+++..++.+..+|.+...++.. .|+ ...-++.-..|+-.+|++..+|...
T Consensus 164 ~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~~~~~~g~~~~~~~l~sEle~v~saiFTdp~DqS~WfY~ 235 (421)
T KOG0529|consen 164 LEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLHPKEADGNFMPKELLQSELEMVHSAIFTDPEDQSCWFYH 235 (421)
T ss_pred cchhHHHHHHHHHhccchhhhHHHHHHHHHHHhccccccCccCCHHHHHHHHHHHHHHHhcCccccceeeeh
Confidence 35667888999999999999999988877763 231 2345566778888899999988764
No 364
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=71.57 E-value=23 Score=49.63 Aligned_cols=131 Identities=14% Similarity=0.110 Sum_probs=95.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS----D---EYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l----G---dyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
..+++...+.|+.|+..|++.....|......++.+..|..+..+ | .+++|+..|++.- -.|.-+.-|...|
T Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 559 (932)
T PRK13184 481 VPDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKA 559 (932)
T ss_pred CcHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHH
Confidence 346777888999999999999999997644567888888877543 2 3666777766643 3466677888999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRAR-------YNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~-------~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
.+|.++|+|+|-+++|.-|++..|..+..- +.|-.+... +...|+...--++..-|...
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 560 LVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYK--HRREALVFMLLALWIAPEKI 625 (932)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhCcccc
Confidence 999999999999999999999988876432 233333222 34456667777777777644
No 365
>KOG2422|consensus
Probab=71.53 E-value=1.8e+02 Score=38.78 Aligned_cols=97 Identities=19% Similarity=0.140 Sum_probs=63.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHH-----hCCCCHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF-NLSDEYDKAVDCFRSALQ-----VRPDDSRLWNR 1802 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly-~~lGdyeEAie~fekALe-----l~PdnaeA~~n 1802 (1956)
.+..-..+.+.|-+..|.++.+-.+.++|.. ++.+...+..+| .+..+|.=-+..++..-. .-|+-+ .-..
T Consensus 345 l~r~m~~l~~RGC~rTA~E~cKlllsLdp~e--DPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~-yS~A 421 (665)
T KOG2422|consen 345 LFRYMQSLAQRGCWRTALEWCKLLLSLDPSE--DPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG-YSLA 421 (665)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhcCCcC--CchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch-HHHH
Confidence 3444566678899999999999999999983 154444444444 455667666666665522 234432 2234
Q ss_pred HHHHHHHCCC---hHHHHHHHHHHHhhCC
Q psy8682 1803 LGASLANGNR---PEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1803 LG~ay~qlGr---yeEAie~yeKALeL~P 1828 (1956)
+|..|..... -..|...+.+|+...|
T Consensus 422 lA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 422 LARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 5556665554 5678889999988766
No 366
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=70.45 E-value=1e+02 Score=36.16 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----DSRLWNRLGASLANGNRPEEA 1816 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----naeA~~nLG~ay~qlGryeEA 1816 (1956)
+...+.+|..|. ..+.++|+..+.+++++.+. +++++..|+.++.++|+++.|
T Consensus 141 ~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 555555555443 45555556655555555432 345555555555555555544
No 367
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.36 E-value=2.4e+02 Score=34.19 Aligned_cols=80 Identities=19% Similarity=0.126 Sum_probs=45.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH--HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR--LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n--LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
..+..+..+|..|.+.|++.+|..+|-.. +++..... +-... ..+-.|.....+...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~-----~~~~~~~~~~ll~~~---------------~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLLG-----TDPSAFAYVMLLEEW---------------STKGYPSEADLFIARA 147 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHTS------HHHHHHHHHHHHHH---------------HHHTSS--HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHhc-----CChhHHHHHHHHHHH---------------HHhcCCcchhHHHHHH
Confidence 45788899999999999888888776432 22222111 11111 1223344444444444
Q ss_pred -HHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1839 -ITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1839 -~ay~klGdyEEAie~yekALeL 1860 (1956)
.-|..+++...|...+...++.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 3467789999999888777766
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=70.13 E-value=2.6e+02 Score=33.93 Aligned_cols=28 Identities=7% Similarity=-0.134 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
..+..+..+|..+.+.|++.+|..+|-.
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~ 115 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHFLL 115 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHHHh
Confidence 3566778899999999999988877643
No 369
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=69.11 E-value=30 Score=42.27 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=63.7
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
....|+.....+... . ...++..++..+...|+++.++..+++.+..+|.+-..|..+-.+|+..
T Consensus 136 ~f~~WV~~~R~~l~e------~---------~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~ 200 (280)
T COG3629 136 RFDEWVLEQRRALEE------L---------FIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVN 200 (280)
T ss_pred hHHHHHHHHHHHHHH------H---------HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHc
Confidence 456676666665554 1 2236777888888888999999999999999999988999999999999
Q ss_pred CChHHHHHHHHHHHHh
Q psy8682 1653 EQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1653 GdyeEALe~yeKALeL 1668 (1956)
|+...|+..|++.-+.
T Consensus 201 g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 201 GRQSAAIRAYRQLKKT 216 (280)
T ss_pred CCchHHHHHHHHHHHH
Confidence 9999999888877654
No 370
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=68.80 E-value=24 Score=44.63 Aligned_cols=92 Identities=11% Similarity=0.010 Sum_probs=67.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhC--------CC-----CH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQE--------PD-----NA-----EVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeld--------Pd-----na-----eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn 1672 (1956)
-|..++++++|..|..-|..+|++. |. ++ .+--.+..||..+++.+-|+....+.+.++|..
T Consensus 182 das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~ 261 (569)
T PF15015_consen 182 DASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSY 261 (569)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcch
Confidence 3444455555555555555555431 11 11 134578899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
..-+...|.++..+.+|.+|.+-+--+.-+
T Consensus 262 frnHLrqAavfR~LeRy~eAarSamia~ym 291 (569)
T PF15015_consen 262 FRNHLRQAAVFRRLERYSEAARSAMIADYM 291 (569)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998776555433
No 371
>KOG0529|consensus
Probab=68.73 E-value=85 Score=40.15 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=102.4
Q ss_pred hcCCH-HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1738 SREIH-QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN------------LSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1738 ~lGdy-eEAle~LekALel~P~n~~~a~a~~~LG~ly~------------~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
..|.+ +++++.-.+.+..+|+. ..+|+..-.++. .+.-.++-+.+...+++.+|+...+|+.+.
T Consensus 40 ~~~~yd~e~l~lt~~ll~~npe~---~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~ 116 (421)
T KOG0529|consen 40 EAKEYDEEHLELTSELLEKNPEF---YTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRK 116 (421)
T ss_pred hccccchHHHHHHHHHHhhCchh---hhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34444 56777778888888887 455544333222 222456667888899999999999999999
Q ss_pred HHHHHCCC--hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1805 ASLANGNR--PEEAVEAYHTALQLSPGFVRARYNLGITCVHLG----ANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1805 ~ay~qlGr--yeEAie~yeKALeL~PdnaeA~~~LA~ay~klG----dyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.++.+.+. +..=++..+++++.+|.+..+|...-.+..... ...+=+++..+++.-++.|..+|..+..++.
T Consensus 117 w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 117 WVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 99998775 578889999999999999888876655554433 2566778899999999999999999877764
No 372
>KOG2581|consensus
Probab=67.56 E-value=38 Score=42.92 Aligned_cols=131 Identities=15% Similarity=0.081 Sum_probs=93.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCC-CC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C-CCHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCP-SQ-----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-----P-DDSRLWNR 1802 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P-~n-----~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-----P-dnaeA~~n 1802 (1956)
.+..++++++|.++-+..+..-. .+ .+.+..|+.+..+|...|+...-...+...+... . ..+.+.+.
T Consensus 135 fl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~ 214 (493)
T KOG2581|consen 135 FLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINL 214 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHH
Confidence 34467889999888776654311 11 1335677888888888898777666666655432 1 12344566
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhh----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQL----SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL----~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
|-..|...+.|+.|.....++.-- +...+...+.+|.+..-+++|..|.+++-+|+...|++.
T Consensus 215 LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 215 LLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence 677888899999998887776521 112356778999999999999999999999999999843
No 373
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=66.60 E-value=21 Score=43.24 Aligned_cols=68 Identities=19% Similarity=0.135 Sum_probs=45.7
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1800 ~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
..++=.++...++++.|..+.++.+.++|+++.-+...|.+|.++|.+.-|+..+...++..|+.+.+
T Consensus 184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a 251 (269)
T COG2912 184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA 251 (269)
T ss_pred HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH
Confidence 34444556666677777777777777777777666667777777777777777777777777765554
No 374
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=66.20 E-value=16 Score=43.29 Aligned_cols=62 Identities=24% Similarity=0.198 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q 1809 (1956)
|..+|.+|..+.|.+ ...++.+|.++...|+.-.|+-+|-+++......+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~---G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSN---GNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTB---SHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCC---CCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 677888888888888 88888888888888888888888888887665567778888877776
No 375
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=65.16 E-value=55 Score=42.53 Aligned_cols=75 Identities=16% Similarity=0.095 Sum_probs=37.7
Q ss_pred hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Q psy8682 1580 DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEAL 1659 (1956)
+|+-|++.+.++.|+++...-. +...|-.+|...+.+|+++-|..+|+++- -+..|..+|...|+.+.-.
T Consensus 324 rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~--------d~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 324 RFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAK--------DFSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT---------HHHHHHHHHHCT-HHHHH
T ss_pred HhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhc--------CccccHHHHHHhCCHHHHH
Confidence 4555555555555555443222 34466666666666666666666666542 1334444555555544433
Q ss_pred HHHHH
Q psy8682 1660 AALSK 1664 (1956)
Q Consensus 1660 e~yeK 1664 (1956)
+....
T Consensus 394 kl~~~ 398 (443)
T PF04053_consen 394 KLAKI 398 (443)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 376
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=64.88 E-value=41 Score=41.15 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhc-------hhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHH
Q psy8682 1552 LWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS-------SVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSA 1624 (1956)
Q Consensus 1552 yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~-------s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEA 1624 (1956)
-|..+...|.++..+.+ .+..+.-+-+..+|++. -..++.|.++-..+..|..-+...+...-... .-
T Consensus 169 ~~~~ie~lwpe~D~kka--~s~lhTtvyqlRKaLs~L~~ne~vts~d~~Ykld~~~~k~Dv~e~es~~rqi~~in---lt 243 (361)
T COG3947 169 SWEAIEALWPEKDEKKA--SSLLHTTVYQLRKALSRLNANEAVTSQDRKYKLDAGLPKYDVQEYESLARQIEAIN---LT 243 (361)
T ss_pred HhHHHHHHccccchhhH--HHHHHHHHHHHHHHhchhccCceEEEcCCceEEecCCccccHHHHHHHhhhhhccc---cC
Confidence 35666677777665542 11222223344556652 02455566666667667766666655543322 33
Q ss_pred HHHHHHHHHhC-----CCC----------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1625 ILYLEAAAKQE-----PDN----------------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1625 Ie~fekALeld-----Pdn----------------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
+.-+.+.+... |+. ...+...+..|...|.+.+|+.+.++++.++|-+...+..+..++
T Consensus 244 ide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~l 323 (361)
T COG3947 244 IDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASL 323 (361)
T ss_pred HHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHH
Confidence 33344444432 111 123445567788999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q psy8682 1684 TNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALel 1702 (1956)
...|+--.|...|++.-+.
T Consensus 324 a~~gD~is~~khyerya~v 342 (361)
T COG3947 324 ATLGDEISAIKHYERYAEV 342 (361)
T ss_pred HHhccchhhhhHHHHHHHH
Confidence 9999988888888776544
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=64.39 E-value=26 Score=35.54 Aligned_cols=55 Identities=11% Similarity=0.054 Sum_probs=24.3
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSI------DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~------~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
..|++.+|++.+.+.......... ...+..++|.++...|++++|+..+++++++
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 455555555555555544332200 0123333444444444444444444444443
No 378
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=64.09 E-value=33 Score=34.46 Aligned_cols=62 Identities=15% Similarity=0.072 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH---HHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWL---SLGISLAENEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~---~LA~ay~~lGdyeEALe~yeKALe 1667 (1956)
......|.-++...+.++|+..++++++..++...-+. .+..+|...|+|.+++++..+-++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~ 71 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLE 71 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777788888888888888887776655443 444566777777777766554443
No 379
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=63.93 E-value=32 Score=41.67 Aligned_cols=71 Identities=15% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
...++=..+...++++.|..+.++.+.++|.++.-+...|.+|.++|.+.-|+..+...++..|+.+.+-.
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ 253 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM 253 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence 44455567788899999999999999999999999999999999999999999999999999998776544
No 380
>KOG2581|consensus
Probab=62.12 E-value=4.2e+02 Score=34.26 Aligned_cols=133 Identities=13% Similarity=0.058 Sum_probs=91.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCC-C--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-----C-CCHHHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEP-D--------NAEVWLSLGISLAENEQDPQAIAALSKCLSIE-----P-KNLEAL 1676 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldP-d--------naeAl~~LA~ay~~lGdyeEALe~yeKALeLd-----P-dnaeAl 1676 (1956)
...++.++++.+|..+-+..+..-- . .+..|+.+..+|...|+...-...+...+... . ..+...
T Consensus 133 ~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLi 212 (493)
T KOG2581|consen 133 LLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLI 212 (493)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHH
Confidence 3334456889999888777664311 1 25678888888988998766555555544432 1 122345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC 1756 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~ 1756 (1956)
+.|-..|...+.|+.|-....+.. .|. .. ...+.+...+.+|.+..-+++|..|.+++..|+...
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~------~pe------~~---snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSV------YPE------AA---SNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhccc------Ccc------cc---ccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 567778888899999988776654 222 00 012445567889999999999999999999999999
Q ss_pred CCC
Q psy8682 1757 PSQ 1759 (1956)
Q Consensus 1757 P~n 1759 (1956)
|.+
T Consensus 278 pq~ 280 (493)
T KOG2581|consen 278 PQH 280 (493)
T ss_pred cch
Confidence 975
No 381
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=61.50 E-value=28 Score=35.35 Aligned_cols=54 Identities=22% Similarity=0.192 Sum_probs=29.2
Q ss_pred HHHcCChHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPD---------NAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPd---------naeAl~~LA~ay~~lGdyeEALe~yeKALeL 1668 (1956)
....|+|.+|++.+.+..+.... ...++..+|.++...|++++|+..+++++++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 34566666666666666543221 1234455555555556666666666555554
No 382
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=60.94 E-value=25 Score=41.60 Aligned_cols=62 Identities=24% Similarity=0.284 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1782 Aie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
|+.+|.+|+.+.|.+...|+.||.++...|+.=.|+-+|-+++....-.+.+..+|...+.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 56777777777777777777777777777777777777777776544456666676666666
No 383
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=60.48 E-value=34 Score=41.79 Aligned_cols=62 Identities=16% Similarity=0.239 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
.++..++..+...|+++.++..+++.+..+|-+-.+|..+-.+|...|+...|+..|++.-+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 34555555666666666666666666666666666666666666666666666666655543
No 384
>KOG4014|consensus
Probab=60.07 E-value=2.8e+02 Score=32.40 Aligned_cols=184 Identities=12% Similarity=0.090 Sum_probs=96.7
Q ss_pred cHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----HcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1604 NETNAFALGQEKLR-QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA-----ENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk-~GdydEAIe~fekALeldPdnaeAl~~LA~ay~-----~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
+++....+|..+-. +.+|++|...|..-...+ ..+..-+.+|..+. ..++...|++.|..+-. .+.+.+-.
T Consensus 33 ~Pe~C~lLgdYlEgi~knF~~A~kv~K~nCden-~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQKNFQAAVKVFKKNCDEN-SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 34467777766543 346777777776544332 23455555555443 23467777777777655 45566667
Q ss_pred HHHHHHHHc-----C--CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1678 AISICFTNE-----A--CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1678 ~LA~aY~~l-----G--dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
.+|.++..- + +..+|.+++.++-.+ . ...+-++|...|+... ++
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----~-----------------~~~aCf~LS~m~~~g~--~k------ 160 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDL----E-----------------DGEACFLLSTMYMGGK--EK------ 160 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccC----C-----------------CchHHHHHHHHHhccc--hh------
Confidence 777666542 2 256777777777666 1 1223333433333221 11
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhh
Q psy8682 1751 NAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1751 kALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL 1826 (1956)
+....|.. ..+. ..+..+....+.++|.++--+|.++. ++.+..++...|.. -.+.++|..+-.+|.++
T Consensus 161 -~~t~ap~~-g~p~---~~~~~~~~~kDMdka~qfa~kACel~--~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 161 -FKTNAPGE-GKPL---DRAELGSLSKDMDKALQFAIKACELD--IPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred -hcccCCCC-CCCc---chhhhhhhhHhHHHHHHHHHHHHhcC--ChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 11112311 0011 12333444566677777766666653 44555555555543 23456666666666654
No 385
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=59.83 E-value=3.8e+02 Score=33.94 Aligned_cols=185 Identities=16% Similarity=0.123 Sum_probs=99.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN-LEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn-aeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
-.++|+.+=+-...+-|..++++-.++.++.+..+. .-..+.+- ...+..--..+...+-.+++...+.+
T Consensus 211 Lc~EairLgRll~~L~p~EPE~~GL~ALmll~~sR~---------~AR~~~~G~~vlL~dQDr~lW~r~lI~eg~all~r 281 (415)
T COG4941 211 LCDEAIRLGRLLARLLPGEPEALGLLALMLLQESRR---------PARFDADGEPVLLEDQDRSLWDRALIDEGLALLDR 281 (415)
T ss_pred HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhh---------hhccCCCCCeeeccccchhhhhHHHHHHHHHHHHH
Confidence 457788777777788888888877777666543221 11111110 00011111123334446677777777
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL-----SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay-----~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly 1773 (1956)
++... .|. |.... -.++.++ ...-++..-..+|.-.....|+ +.+-.+.+.+.
T Consensus 282 A~~~~---~pG-------------PYqlq--AAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apS----PvV~LNRAVAl 339 (415)
T COG4941 282 ALASR---RPG-------------PYQLQ--AAIAALHARARRAEDTDWPAIDALYDALEQAAPS----PVVTLNRAVAL 339 (415)
T ss_pred HHHcC---CCC-------------hHHHH--HHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCC----CeEeehHHHHH
Confidence 77661 122 00000 0111121 2344566666666666666665 34455566665
Q ss_pred HHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1774 NLSDEYDKAVDCFRSALQV--RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekALel--~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
.+..-.+.++...+..... -..+...+...|..+.++|+.++|...|++++.+.++..+..+
T Consensus 340 a~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 340 AMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 5555555555555554433 1233345556677777777777777777777777776555443
No 386
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=58.76 E-value=1.3e+02 Score=36.03 Aligned_cols=61 Identities=11% Similarity=0.089 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCChHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAE-NEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~-lGdyeEALe~yeKALe 1667 (1956)
.+..+|....+.|+|++++.+.++++..++.- .+-...++.+|-. .|....+...+.....
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 56778899999999999999999999987753 3445555555532 3444555555544443
No 387
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=57.92 E-value=2.6e+02 Score=36.03 Aligned_cols=94 Identities=15% Similarity=0.129 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C--CC---CHHHHHHHHHHH--HHCCChHHHHHHHHHHHhhCCCcHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQV--R--PD---DSRLWNRLGASL--ANGNRPEEAVEAYHTALQLSPGFVRA 1833 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel--~--Pd---naeA~~nLG~ay--~qlGryeEAie~yeKALeL~PdnaeA 1833 (1956)
..+....+.++...|.+.+|...+-+.... . -. .+.++-.+|.+| ........-..-++| .+--
T Consensus 300 ~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~~~~~alllE~~a~~~~~~~~~~~~~~~~r~RK-------~af~ 372 (414)
T PF12739_consen 300 LRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLRPFGSALLLEQAAYCYASLRSNRPSPGLTRFRK-------YAFH 372 (414)
T ss_pred HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHHHhhcccccCCCCccchhhHH-------HHHH
Confidence 456666777888889988887776666554 2 12 334444555555 221110000000111 0111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1834 RYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1834 ~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+..-|.-|.+.|+...|+.+|.+|+.....
T Consensus 373 ~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 373 MVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 233467789999999999999999998764
No 388
>KOG4014|consensus
Probab=56.68 E-value=3.7e+02 Score=31.42 Aligned_cols=184 Identities=15% Similarity=0.129 Sum_probs=120.3
Q ss_pred CCChhhhhhhHHHHHhchhhHhHhhhhccCC--CccHHHHHHHHHHHHH-----cCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1571 ESLPHQWFSDFSRNQRSSVSMHEYTFAEDNP--MQNETNAFALGQEKLR-----QGDLPSAILYLEAAAKQEPDNAEVWL 1643 (1956)
Q Consensus 1571 ~~~a~~WL~dYeeALs~s~ydKAlqL~p~NP--~~daeall~LG~aylk-----~GdydEAIe~fekALeldPdnaeAl~ 1643 (1956)
++++-..|++|-+.|.. .|++|..+...|- ...+...|..|..++. .++...|++.|..+.. .+.+.+-.
T Consensus 33 ~Pe~C~lLgdYlEgi~k-nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~--~n~~~aC~ 109 (248)
T KOG4014|consen 33 RPESCQLLGDYLEGIQK-NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACD--ANIPQACR 109 (248)
T ss_pred CchHHHHHHHHHHHHHH-HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhc--cCCHHHHh
Confidence 44566667777777775 4666666544332 2245688888877664 3588999999999886 45678888
Q ss_pred HHHHHHHHc-----C--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q psy8682 1644 SLGISLAEN-----E--QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD 1716 (1956)
Q Consensus 1644 ~LA~ay~~l-----G--dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~L 1716 (1956)
.+|.++..- + +..+|++++.++-.+. +..+-+.|...|..- .++ +... .|. . -..
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl~--~~~aCf~LS~m~~~g--~~k-------~~t~----ap~-~-g~p- 171 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACDLE--DGEACFLLSTMYMGG--KEK-------FKTN----APG-E-GKP- 171 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhccCC--CchHHHHHHHHHhcc--chh-------hccc----CCC-C-CCC-
Confidence 888887643 2 3678999999987654 556667777665432 222 1111 221 0 000
Q ss_pred cCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHh
Q psy8682 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1717 l~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel 1792 (1956)
...+..+.-..+.+.|.++..+|.++.- +.+-.++.+.|.. -++-++|..+-++|.++
T Consensus 172 -------------~~~~~~~~~~kDMdka~qfa~kACel~~-----~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 172 -------------LDRAELGSLSKDMDKALQFAIKACELDI-----PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred -------------cchhhhhhhhHhHHHHHHHHHHHHhcCC-----hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 0124556667888999999999998843 4566777777743 24788888888888775
Q ss_pred C
Q psy8682 1793 R 1793 (1956)
Q Consensus 1793 ~ 1793 (1956)
.
T Consensus 234 ~ 234 (248)
T KOG4014|consen 234 M 234 (248)
T ss_pred H
Confidence 3
No 389
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=55.57 E-value=2e+02 Score=36.80 Aligned_cols=63 Identities=21% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE--VWLSL--GISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnae--Al~~L--A~ay~~lGdyeEALe~yeKALeL 1668 (1956)
......+..++..++|..|...|+.+...-|.... .+..+ |..+...-++.+|.+.+++.+..
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34556788899999999999999999986344333 34444 44556788999999999998775
No 390
>KOG1463|consensus
Probab=54.69 E-value=1.3e+02 Score=37.86 Aligned_cols=174 Identities=16% Similarity=0.081 Sum_probs=112.9
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhh
Q psy8682 1643 LSLGISLAENEQDPQAIAALSKCLSI----E--PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD 1716 (1956)
Q Consensus 1643 ~~LA~ay~~lGdyeEALe~yeKALeL----d--PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~L 1716 (1956)
..+..+|+..++|.+|+......+.. + +.-.+++..-..+|..+.+..+|...+..|-..+ + .+|..-
T Consensus 132 arli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~A---n---aiYcpP 205 (411)
T KOG1463|consen 132 ARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTA---N---AIYCPP 205 (411)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhh---c---ccccCH
Confidence 46788999999999999888776543 2 2233456666778888888888888887765440 0 001100
Q ss_pred cCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHHcCCHHHHHHH--HHHHHH
Q psy8682 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV---QNGLGVLFNLSDEYDKAVDC--FRSALQ 1791 (1956)
Q Consensus 1717 l~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a---~~~LG~ly~~lGdyeEAie~--fekALe 1791 (1956)
...+..-..-|..+....+|..|..+|-+|++-...-.....+ +-.+-.+-...+..++-... -+.+++
T Consensus 206 ------qlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~ 279 (411)
T KOG1463|consen 206 ------QLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK 279 (411)
T ss_pred ------HHHHHHHHhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh
Confidence 0112223344666777799999999999998865432111222 33333344455666654443 455677
Q ss_pred hCCCCHHHHHHHHHHHHH--CCChHHHHHHHHHHHhhCC
Q psy8682 1792 VRPDDSRLWNRLGASLAN--GNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1792 l~PdnaeA~~nLG~ay~q--lGryeEAie~yeKALeL~P 1828 (1956)
....+..+....+.++.+ +.+|+.|+..|..-+..+|
T Consensus 280 y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ 318 (411)
T KOG1463|consen 280 YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDP 318 (411)
T ss_pred ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcCh
Confidence 777788888888888865 4678889998888877655
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=54.48 E-value=6.7e+02 Score=33.46 Aligned_cols=206 Identities=10% Similarity=0.056 Sum_probs=125.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|-+-..+..+-.++.+.-+..-....+.+.+... ++..+++.++.+|... ..++-....++.++. + +.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~-e~kmal~el~q~y~en-~n~~l~~lWer~ve~----d-----fn- 130 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG-ESKMALLELLQCYKEN-GNEQLYSLWERLVEY----D-----FN- 130 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh----c-----ch-
Confidence 3344455555555555555556666777777654 5566888899988877 556666667766666 1 11
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-Q--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
....-..|+..|.. ++.+.+..+|.+++...-. . .....+|..+-.. --.+.+.-.....+.-..
T Consensus 131 ---------Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~ 198 (711)
T COG1747 131 ---------DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTK 198 (711)
T ss_pred ---------hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHh
Confidence 22233456666665 8899999999999865422 1 0112233333211 122333333333332221
Q ss_pred CC-CCH-HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--------------------cCCHHHH
Q psy8682 1793 RP-DDS-RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH--------------------LGANTQA 1850 (1956)
Q Consensus 1793 ~P-dna-eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k--------------------lGdyEEA 1850 (1956)
.. ... .++..+-.-|....++.+|++.+...++.+..+..+..++...+.. -.++-+|
T Consensus 199 lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y~~~~~~e~yl~~s~i~~~~rnf~~~ 278 (711)
T COG1747 199 LGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKYRGHSQLEEYLKISNISQSGRNFFEA 278 (711)
T ss_pred hccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHhccchhHHHHHHhcchhhccccHHHH
Confidence 11 111 2233333556678899999999999999998888887777766655 4567888
Q ss_pred HHHHHHHHHhcCCCh
Q psy8682 1851 VEHFLTALNQQAATH 1865 (1956)
Q Consensus 1851 ie~yekALeLdPdn~ 1865 (1956)
+..|++.+..+..|-
T Consensus 279 l~dFek~m~f~eGnF 293 (711)
T COG1747 279 LNDFEKLMHFDEGNF 293 (711)
T ss_pred HHHHHHHheeccCce
Confidence 999999888877654
No 392
>KOG1972|consensus
Probab=54.08 E-value=21 Score=48.26 Aligned_cols=132 Identities=16% Similarity=0.123 Sum_probs=71.1
Q ss_pred CHHHHHHHHHHHH--------HcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 812 VISNWIKYAQWEE--------SQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF 883 (1956)
Q Consensus 812 s~~lWlkYAqfE~--------~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~L 883 (1956)
...+|.+|.+.-. ..++.++.| .++..+..+|...-.|..|+.+|.....-.+-|-+=..+.. .....-+
T Consensus 721 ~~~~y~~ycqiq~~~~~~S~l~f~~~~k~r-F~e~~v~~fsrn~~~~e~wa~l~s~l~qk~r~rl~~~k~~~-~~~n~ai 798 (913)
T KOG1972|consen 721 EQSLYRSYCQIQIKHFWASNLAFYNLPKVR-FFEEGVTLFSRNAFGWELWAELESELRQKIRKRLSSTKNEV-DGRNAAI 798 (913)
T ss_pred hHHHHHHHHHHHHHHHHhhhhhccccccee-eeccchhhccccchhHHHHHHHHHHHHHHHHHHHHHHhhhh-cchhhhh
Confidence 3457777774432 236777888 55666888999999999999987654333222221111110 0000224
Q ss_pred HHHHHHHHHHcC-CHHHHHHHH--------HhhccCchHHHHHHHHhhcccccchHHHHHHHHHHHhccccCc
Q psy8682 884 WYKYTYMEEMLE-NVAGKLFVF--------HRDSISQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCCG 947 (1956)
Q Consensus 884 W~kYidfE~k~G-d~e~aR~Vf--------ERAL~~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~g 947 (1956)
|..|..+|..-. -....+..| +.-++...-+|..|++.-.+... ...-...+-+|+.+|||-
T Consensus 799 ~~~~~i~e~~~~~i~~a~t~mf~n~~~si~d~~l~~~~~~WR~yl~~lskl~~--~~~~~~~~tkA~~sCpW~ 869 (913)
T KOG1972|consen 799 HAEQVIPETGDDQIMSANTGMFRNADRSILDEELPDENSKWRDYLEALSKLLN--KERSKAASTKALDSCPWA 869 (913)
T ss_pred ccccccccchHHHHhHHHHHHHHHHHHhcccccCCcchhHHHHHHHHHHHhhh--hhhhHHHHHHHhhcCchH
Confidence 444444432211 112223333 22236667789999887766443 333345566667788854
No 393
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=50.54 E-value=80 Score=37.70 Aligned_cols=65 Identities=12% Similarity=-0.039 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
.......+|..|+..|++++|+++|+.+....... .....++..+..++...|+.+..+.+.-+.
T Consensus 177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL 244 (247)
T PF11817_consen 177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL 244 (247)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 34445678888888888888888888886654433 123445566667777777777766655443
No 394
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=50.47 E-value=2.3e+02 Score=36.14 Aligned_cols=168 Identities=11% Similarity=-0.033 Sum_probs=87.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL--FNLSDEYDKAVDCFRSALQVRPD---DSRLWNRL 1803 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~l--y~~lGdyeEAie~fekALel~Pd---naeA~~nL 1803 (1956)
....+..++..++|..|...+......-|.. .....+..+... +...-++.+|.+.++..+...-. ....+..+
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~-~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l~~~~~~l~~~ 212 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGR-EEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKALNQEREGLKEL 212 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCch-hhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhhHhHHHHHHHH
Confidence 4456777889999999999999999863443 112344444444 45778899999999998765321 11222222
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh-hhcc
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG--FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR-AVKE 1880 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd--naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~-~lg~ 1880 (1956)
..+.........+........+ .+. ....++..|.=-...|+|++|+..+=+++++--..--..+.+-.-.. ...+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl~~Q~rL~~~g~~t~~~~~~~~ 291 (379)
T PF09670_consen 213 VEVLKALESILSALEDKKQRQK-KLYYALLADLLANAERRAAQGRYDDAVARLYRALELLAQHRLARYGIDTSDPDLLEK 291 (379)
T ss_pred HHHHHHHHhhccchhhhhcccc-ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccc
Confidence 2222222111111111111000 000 01122233333346789999998888888764432211111111001 1344
Q ss_pred cHHHHHHHHHhccccCCC
Q psy8682 1881 MSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1881 ~seAIws~Lr~Al~l~gr 1898 (1956)
.++++.+.+.......+.
T Consensus 292 ~pe~lr~~~~~~~~~~~~ 309 (379)
T PF09670_consen 292 LPEALRDRYERKRGDKGF 309 (379)
T ss_pred chHHHHHHHHHHhccCCc
Confidence 456666666665555544
No 395
>KOG0546|consensus
Probab=49.96 E-value=18 Score=45.03 Aligned_cols=120 Identities=15% Similarity=0.060 Sum_probs=65.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCP---SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P---~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay 1807 (1956)
+.+....+.++++.|..-|.+++.... .. .. .+... +.-.+...-...+.+++.+-
T Consensus 227 ~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~-----------------~~-~e~~~---~~~~~~~~r~~~~~n~~~~~ 285 (372)
T KOG0546|consen 227 NIGNKEFKKQRYREALAKYRKALRYLSEQSRD-----------------RE-KEQEN---RIPPLRELRFSIRRNLAAVG 285 (372)
T ss_pred ccchhhhhhccHhHHHHHHHHHhhhhcccccc-----------------cc-ccccc---ccccccccccccccchHHhc
Confidence 356677888899999888888875422 11 00 00000 00011111223333455556
Q ss_pred HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
...+.+..|+..-..++..++....+++..+..+..+.++++|++.++.+....|++......+
T Consensus 286 lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~ 349 (372)
T KOG0546|consen 286 LKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEEL 349 (372)
T ss_pred ccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHH
Confidence 6666666666665555555555666666666666666666666666666666666655544333
No 396
>KOG1920|consensus
Probab=49.17 E-value=1.4e+02 Score=42.54 Aligned_cols=50 Identities=20% Similarity=0.092 Sum_probs=25.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
..|+.-+..++++-+|-+...+.+.- |. . .-..|.+...|++|+.....+
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd-~~--~----av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD-PE--E----AVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC-HH--H----HHHHHhhHhHHHHHHHHHHhc
Confidence 44555566677777776666655432 11 1 112334445566666554443
No 397
>KOG0546|consensus
Probab=49.10 E-value=16 Score=45.47 Aligned_cols=115 Identities=16% Similarity=0.151 Sum_probs=79.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q psy8682 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848 (1956)
Q Consensus 1769 LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyE 1848 (1956)
.|.-..+.++|+.|..-|.+++...... ...+..+... +...+...-...+.+++.+-.+.+.+.
T Consensus 228 ~~~~~~kk~~~~~a~~k~~k~~r~~~~~------------s~~~~~e~~~---~~~~~~~~r~~~~~n~~~~~lk~~~~~ 292 (372)
T KOG0546|consen 228 IGNKEFKKQRYREALAKYRKALRYLSEQ------------SRDREKEQEN---RIPPLRELRFSIRRNLAAVGLKVKGRG 292 (372)
T ss_pred cchhhhhhccHhHHHHHHHHHhhhhccc------------cccccccccc---ccccccccccccccchHHhcccccCCC
Confidence 3555678899999999888887642210 0000011111 111122223345566899999999999
Q ss_pred HHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1849 EAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
.|+..-..++..+++...+++.+|..+....++.+++ ..+..+....+..
T Consensus 293 ~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~-~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 293 GARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEAL-EDLKKAKQKAPND 342 (372)
T ss_pred cceeccccccccChhhCcHHHHHHhHHHhhhchhhhH-HHHHHhhccCcch
Confidence 9999999999999999999999999999999987777 6666666665554
No 398
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=48.31 E-value=4.3e+02 Score=34.17 Aligned_cols=93 Identities=14% Similarity=0.088 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCCC---CHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQ--CPSQSI---DPDVQNGLGVLF--NLSDEYDKAVDCFRSALQVRPDDSRLW 1800 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel--~P~n~~---~a~a~~~LG~ly--~~lGdyeEAie~fekALel~PdnaeA~ 1800 (1956)
.....+.++...+.+.+|...+-++... ..+. . .+.++-.+|.+| ........-..-++ ..+.-+
T Consensus 302 ~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l-~~~~~alllE~~a~~~~~~~~~~~~~~~~r~R-------K~af~~ 373 (414)
T PF12739_consen 302 CALLLAELLKSRGGYWEAADQLIRWTSEILESDL-RPFGSALLLEQAAYCYASLRSNRPSPGLTRFR-------KYAFHM 373 (414)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhh-hhHhhHHHHHHHHHhhcccccCCCCccchhhH-------HHHHHH
Confidence 4455667777888888887777666554 2222 1 133344444444 11100000000000 011122
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
..-|.-|.+.|+...|+.+|.+|+....
T Consensus 374 vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 374 VLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 3346788999999999999999988654
No 399
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=47.93 E-value=72 Score=37.33 Aligned_cols=78 Identities=14% Similarity=0.127 Sum_probs=52.3
Q ss_pred HHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK----NLEALMAISICFTNEACL 1689 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd----naeAl~~LA~aY~~lGdy 1689 (1956)
+..+-.-++|...|-++-... -++++..+.+|..|. ..+.++|+.++.+++++.+. +++++..|+.+|..+|++
T Consensus 116 ~Wsr~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 116 HWSRFGDQEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred HhhccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 344434466666665543221 245677777776665 66778888888888887543 467888888888888888
Q ss_pred HHHH
Q psy8682 1690 HDAL 1693 (1956)
Q Consensus 1690 dEAL 1693 (1956)
+.|-
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 8774
No 400
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=46.34 E-value=47 Score=28.46 Aligned_cols=31 Identities=13% Similarity=0.142 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHH--HHHHHHhcCC
Q psy8682 1833 ARYNLGITCVHLGANTQAVEH--FLTALNQQAA 1863 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~--yekALeLdPd 1863 (1956)
.++.+|..+...|++++|+.. |.-+..+++.
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 455566666666666666666 3355555543
No 401
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=45.55 E-value=64 Score=39.59 Aligned_cols=59 Identities=20% Similarity=0.320 Sum_probs=44.1
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1800 ~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekAL 1858 (1956)
....+..|...|.+.+|+++.++++.++|-+...+..|-.++..+|+--.|+++|++.-
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34456667777888888888888888888777778888888888888777777776654
No 402
>KOG0276|consensus
Probab=44.72 E-value=1.7e+02 Score=39.24 Aligned_cols=50 Identities=18% Similarity=0.075 Sum_probs=34.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
.+..+.|+++.|.++..++ ++ ..-|..||.+....+++..|.++|.++-.
T Consensus 645 elal~lgrl~iA~~la~e~-----~s---~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA-----NS---EVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh-----cc---hHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 4455677777777665543 22 44577888888888888888888887644
No 403
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=44.39 E-value=4.2e+02 Score=28.25 Aligned_cols=30 Identities=13% Similarity=0.117 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.....+.+++.++..++.+...+..+..+|
T Consensus 22 ~~~~l~~yLe~~~~~~~~~~~~~~~li~ly 51 (140)
T smart00299 22 LLEELIPYLESALKLNSENPALQTKLIELY 51 (140)
T ss_pred cHHHHHHHHHHHHccCccchhHHHHHHHHH
Confidence 344444444444444333333344444433
No 404
>KOG2114|consensus
Probab=43.32 E-value=2.3e+02 Score=39.33 Aligned_cols=207 Identities=14% Similarity=0.075 Sum_probs=113.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcC
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSI-EPKNLEALMAISICFTNEA 1687 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeL-dPdnaeAl~~LA~aY~~lG 1687 (1956)
..-..+.+..-|+-|+.+.+.- ..+++ -...+...|..++..|++++|...|-+++.. +|...-- -|....
T Consensus 339 ~kL~iL~kK~ly~~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~------kfLdaq 411 (933)
T KOG2114|consen 339 TKLDILFKKNLYKVAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIK------KFLDAQ 411 (933)
T ss_pred HHHHHHHHhhhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHH------HhcCHH
Confidence 4456677888899998877653 22332 2457788899999999999999999998864 3322211 122333
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHH
Q psy8682 1688 CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN 1767 (1956)
Q Consensus 1688 dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~ 1767 (1956)
+..+-..+++...+.+. ....--..|-.+|.++++.++-.+..++ .+......++-
T Consensus 412 ~IknLt~YLe~L~~~gl-------------------a~~dhttlLLncYiKlkd~~kL~efI~~----~~~g~~~fd~e- 467 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGL-------------------ANSDHTTLLLNCYIKLKDVEKLTEFISK----CDKGEWFFDVE- 467 (933)
T ss_pred HHHHHHHHHHHHHHccc-------------------ccchhHHHHHHHHHHhcchHHHHHHHhc----CCCcceeeeHH-
Confidence 33344444554444410 1111223466899999998876555443 33210000011
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-HHHHHHHHHHHHHcCC
Q psy8682 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-VRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1768 ~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-aeA~~~LA~ay~klGd 1846 (1956)
..-.++.+.+-+++|.....+.- .+. ..+-.++...++|++|++++... .|.. .......|..+....
T Consensus 468 ~al~Ilr~snyl~~a~~LA~k~~----~he---~vl~ille~~~ny~eAl~yi~sl---p~~e~l~~l~kyGk~Ll~h~- 536 (933)
T KOG2114|consen 468 TALEILRKSNYLDEAELLATKFK----KHE---WVLDILLEDLHNYEEALRYISSL---PISELLRTLNKYGKILLEHD- 536 (933)
T ss_pred HHHHHHHHhChHHHHHHHHHHhc----cCH---HHHHHHHHHhcCHHHHHHHHhcC---CHHHHHHHHHHHHHHHHhhC-
Confidence 11133444455555554433321 122 23445677899999999998753 2322 334556677776544
Q ss_pred HHHHHHHHHHHH
Q psy8682 1847 NTQAVEHFLTAL 1858 (1956)
Q Consensus 1847 yEEAie~yekAL 1858 (1956)
.++-...+-+..
T Consensus 537 P~~t~~ili~~~ 548 (933)
T KOG2114|consen 537 PEETMKILIELI 548 (933)
T ss_pred hHHHHHHHHHHH
Confidence 344444444433
No 405
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=42.67 E-value=57 Score=27.94 Aligned_cols=21 Identities=19% Similarity=0.360 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHcCChHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILY 1627 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~ 1627 (1956)
.++.+|..+..+|++++|+..
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHH
Confidence 344555555555555555555
No 406
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=42.50 E-value=97 Score=31.34 Aligned_cols=50 Identities=16% Similarity=0.031 Sum_probs=20.8
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
++...+.++|+...+++++..++.+....++-.+..+|...|+|.+++++
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444311112222333344444444444443
No 407
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=42.25 E-value=7.1e+02 Score=30.23 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-CC--CCHHHHHHHHHHHHH-cCChHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ-EP--DNAEVWLSLGISLAE-NEQDPQAIAALSK 1664 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel-dP--dnaeAl~~LA~ay~~-lGdyeEALe~yeK 1664 (1956)
.+..+|...-+.++|++.+.+.+++++. +| -+.+-...+..+|-. .|....+...+..
T Consensus 3 ~~v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt~EERnLLSvayKn~i~~~R~s~R~i~s 64 (244)
T smart00101 3 ENVYMAKLAEQAERYEEMVEFMEKVAKTVDSEELTVEERNLLSVAYKNVIGARRASWRIISS 64 (244)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCCHHHHHHHHHHHhhhhcccHHHHHHHhH
Confidence 4566788888889999999999999886 43 345566677777654 4777777777665
No 408
>KOG2062|consensus
Probab=41.40 E-value=5.9e+02 Score=35.25 Aligned_cols=244 Identities=12% Similarity=0.109 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH---HhcCCCCCCCchhhhhhcCcchhhhhHHH
Q psy8682 1654 QDPQAIAALSKCLSIE--PKNLEALMAISICFTNEACLHDALDTLKDK---IRPGQESNPRPSAYKADALPSKLTRLANH 1728 (1956)
Q Consensus 1654 dyeEALe~yeKALeLd--PdnaeAl~~LA~aY~~lGdydEALe~leKA---Lelg~e~dPd~eay~~Ll~~~Kl~e~a~a 1728 (1956)
...+++...+...+-+ |+...+-.....+|+.+|+|++|+++.-.+ ... +++...+..+. ....+.
T Consensus 38 EIsd~l~~IE~lyed~~F~er~~AaL~~SKVyy~Lgeye~Al~yAL~ag~~F~V----d~~S~y~etiv-----ak~id~ 108 (929)
T KOG2062|consen 38 EISDSLPKIESLYEDETFPERQLAALLASKVYYYLGEYEDALEYALRAGDDFDV----DENSDYVETIV-----AKCIDM 108 (929)
T ss_pred HhhhhHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccc----cCccchhhHHH-----HHHHHH
Q ss_pred HHHHHHHHHhcCC-----HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1729 TLTFRSPLSSREI-----HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1729 ~lnLA~ay~~lGd-----yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
+...+.-.+.... -++-....++.+...-++ ...+..+|.++.. ..+..+++|+-...........+
T Consensus 109 yi~~~~~~~~~~~~~~~iD~rL~~iv~rmi~kcl~d---~e~~~aiGia~E~-----~rld~ie~Ail~~d~~~~~~~yl 180 (929)
T KOG2062|consen 109 YIETASETYKNPEQKSPIDQRLRDIVERMIQKCLDD---NEYKQAIGIAFET-----RRLDIIEEAILKSDSVIGNLTYL 180 (929)
T ss_pred HHHHHHHHhcCccccCCCCHHHHHHHHHHHHHhhhh---hHHHHHHhHHhhh-----hhHHHHHHHhccccccchHHHHH
Q ss_pred HHHHHHCCC-hHHHHHHHHHHHhh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1804 GASLANGNR-PEEAVEAYHTALQL-----SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1804 G~ay~qlGr-yeEAie~yeKALeL-----~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
-.+.....+ -+=-.+.++..++. .|+ ++.++.||..+.+.+.|...+++.++ +
T Consensus 181 l~l~~s~v~~~efR~~vlr~lv~~y~~~~~PD----y~~vc~c~v~Ldd~~~va~ll~kL~~---e-------------- 239 (929)
T KOG2062|consen 181 LELLISLVNNREFRNKVLRLLVKTYLKLPSPD----YFSVCQCYVFLDDAEAVADLLEKLVK---E-------------- 239 (929)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHccCCCCC----eeeeeeeeEEcCCHHHHHHHHHHHHh---c--------------
Q ss_pred hcccHHHHHHHHHhccccCCCCcccccccCcchhHHHHHHhhcCCCCCCCCCcchhHHHHHHHhhhhccccccc
Q psy8682 1878 VKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCSDDDDDPSGYQPCTKLHNLSGVLGTVHLTYQ 1951 (1956)
Q Consensus 1878 lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~~~~~~Ra~~~~~dde~peg~q~~~kL~~lsG~lg~l~~~y~ 1951 (1956)
+.+...++.|+.+... .-.+......+..+.+ +..++-|+.++.......-++.++.+
T Consensus 240 -----~~~llayQIAFDL~es----------asQefL~~v~~~l~~d-~~~de~p~~kii~ILSGe~tik~~l~ 297 (929)
T KOG2062|consen 240 -----DDLLLAYQIAFDLYES----------ASQEFLDSVLDRLPAD-DARDEKPMEKIISILSGEETIKLYLQ 297 (929)
T ss_pred -----chhhhHHHHHHHHhhc----------cCHHHHHHHHHHcccc-cccccChHHHHHHHhcCchHHHHHHH
No 409
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=40.35 E-value=30 Score=27.02 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHF 1854 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~y 1854 (1956)
+.+.+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3444555555555555555444
No 410
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.99 E-value=54 Score=42.09 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSAL--------QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekAL--------el~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
-+...|.+++..+|+|..|++.++..- +..+-+..+++.+|-+|+.+++|.+|++.|...+-
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788899999999999876531 11122446788889999999999999999988764
No 411
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=38.98 E-value=44 Score=41.81 Aligned_cols=45 Identities=9% Similarity=0.252 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 864 NHARNLWDRAVTILPRA---NQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 864 erARsLFERAL~~~Pks---~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
+.++.+.+..++..|.. +++|+..+.+|...|+++.+-.|||.|+
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi 167 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAI 167 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 56777888888877765 7889999999999999999999999988
No 412
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.95 E-value=6.8e+02 Score=31.85 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA 1799 (1956)
+.+-+..|..+...|++-++...+.+++-+.|+....
T Consensus 213 pYv~Yl~~lf~a~n~dv~kg~~~~~e~~gi~qd~~~~ 249 (449)
T COG3014 213 PYVSYLSGLFYALNGDVNKGLGYLNEAYGISQDQSPF 249 (449)
T ss_pred HHHHHHHHHhcccCccHhHHHHHHHHHhccCchhhHH
Confidence 5556666666777778888888888888777774433
No 413
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=38.79 E-value=35 Score=26.62 Aligned_cols=19 Identities=16% Similarity=0.022 Sum_probs=7.7
Q ss_pred HHHHHHHHHcCCHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~ 1785 (1956)
..+|.++..+|++++|...
T Consensus 5 ~~la~~~~~~G~~~eA~~~ 23 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERL 23 (26)
T ss_pred HHHHHHHHHcCCHHHHHHH
Confidence 3334444444444444333
No 414
>KOG2114|consensus
Probab=38.69 E-value=3.6e+02 Score=37.63 Aligned_cols=87 Identities=10% Similarity=0.029 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQ-EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALel-dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
..+.....|..++.+|++++|...|-+.+.. +|...--- |....+..+-..+++...+..-.+.+--..|-.+
T Consensus 367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~k------fLdaq~IknLt~YLe~L~~~gla~~dhttlLLnc 440 (933)
T KOG2114|consen 367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKK------FLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNC 440 (933)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHH------hcCHHHHHHHHHHHHHHHHcccccchhHHHHHHH
Confidence 5667788899999999999999999998864 23211111 1122222333444555555444444444556677
Q ss_pred HHHcCCHHHHHHHH
Q psy8682 1683 FTNEACLHDALDTL 1696 (1956)
Q Consensus 1683 Y~~lGdydEALe~l 1696 (1956)
|.++++.++-.++.
T Consensus 441 YiKlkd~~kL~efI 454 (933)
T KOG2114|consen 441 YIKLKDVEKLTEFI 454 (933)
T ss_pred HHHhcchHHHHHHH
Confidence 77777665544443
No 415
>PF13041 PPR_2: PPR repeat family
Probab=38.17 E-value=90 Score=27.62 Aligned_cols=43 Identities=14% Similarity=0.082 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHhhcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Q psy8682 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDFTELLVYLF 773 (1956)
Q Consensus 731 d~dV~~~La~Ly~~sgeyEkArelFerALkkf-P~d~~IWl~yl 773 (1956)
|--+|..++.-|.+.|++++|.++|+++.+.. +.+...+..++
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li 45 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILI 45 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 45678899999999999999999999999864 44544544444
No 416
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=38.05 E-value=6e+02 Score=31.62 Aligned_cols=144 Identities=10% Similarity=0.101 Sum_probs=91.4
Q ss_pred CCCccHH-HHHHHHHHHHHcCChHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-
Q psy8682 1600 NPMQNET-NAFALGQEKLRQGDLPSAILYLEAAAKQ-EPD-----NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK- 1671 (1956)
Q Consensus 1600 NP~~dae-all~LG~aylk~GdydEAIe~fekALel-dPd-----naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd- 1671 (1956)
||..++. .-+..+..--..+.-++-++-+.+.++. ..+ ..+++.++|..|.+.++.+.+.+...+.+...-.
T Consensus 69 n~kt~a~~ikfD~~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 69 NPKTSASVIKFDRGRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST 148 (412)
T ss_pred CCcccchheehhhHHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc
Confidence 5553433 3344554444444556666666555543 222 2678999999999999999999998887765411
Q ss_pred --CHH---HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1672 --NLE---ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1672 --nae---Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
..+ .-..+|.+|-.+.-.++.++..+..++. .-+ |..-. ... ...|...+...++.+|.
T Consensus 149 g~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk----GgD---WeRrN-------RyK--~Y~Gi~~m~~RnFkeAa 212 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK----GGD---WERRN-------RYK--VYKGIFKMMRRNFKEAA 212 (412)
T ss_pred ccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh----CCC---HHhhh-------hHH--HHHHHHHHHHHhhHHHH
Confidence 122 3346777777777778888888888887 333 32211 111 22455666778899999
Q ss_pred HHHHHHHHhCCCC
Q psy8682 1747 SLYLNAARQCPSQ 1759 (1956)
Q Consensus 1747 e~LekALel~P~n 1759 (1956)
.++...+......
T Consensus 213 ~Ll~d~l~tF~S~ 225 (412)
T COG5187 213 ILLSDILPTFESS 225 (412)
T ss_pred HHHHHHhcccccc
Confidence 9888887665443
No 417
>KOG1166|consensus
Probab=37.73 E-value=1.8e+02 Score=41.39 Aligned_cols=104 Identities=19% Similarity=0.281 Sum_probs=69.8
Q ss_pred CCHHHHHHHHHHHHH----cCC-HHHHHHHHHHhhcc------cCCCHH---HHHHHHHHHHHcCChHHHHHHHHHHHH-
Q psy8682 811 MVISNWIKYAQWEES----QKQ-VDRARSIYERALDV------DHRNIT---LWLKYTELEMRNRQVNHARNLWDRAVT- 875 (1956)
Q Consensus 811 ~s~~lWlkYAqfE~~----~Gd-~ErARsIfERALs~------~Pk~~d---LWl~YadfE~k~gnierARsLFERAL~- 875 (1956)
.-...|.+|+.|... .+. .+..+.+.||++.. +..... +|+.| + .......++++|.-...
T Consensus 32 DPl~~w~ryi~wv~~~~~~~~~~~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~---~-~~e~~~d~~d~f~~m~~k 107 (974)
T KOG1166|consen 32 DPLDKWLRYIEWVLEVYPEGKENQSLLRNLLERCLEELEDLKRYRNDPRFLILWCSL---E-LREELQDAEDFFSYLENK 107 (974)
T ss_pred CchhhhHhHhhhhhhccccCCchhhhHHHHHHHHHHhccchhhccccHHHHHHHHhH---H-HHHHHhhHHHHHHHHHhc
Confidence 446789999999653 344 67788899988872 233333 34432 1 12345667777777665
Q ss_pred -hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHH
Q psy8682 876 -ILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGA 918 (1956)
Q Consensus 876 -~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Y 918 (1956)
..+...-++..|....++.+...+|+.||..++ .+...|=..|
T Consensus 108 gIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~~rL~~~~ 155 (974)
T KOG1166|consen 108 GIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPLERLLRQY 155 (974)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 344556778888888888888999999999988 4444444444
No 418
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=37.32 E-value=41 Score=26.09 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhh
Q psy8682 734 VQNGLGVLFNLSDEYDKAVDCFRSALQV 761 (1956)
Q Consensus 734 V~~~La~Ly~~sgeyEkArelFerALkk 761 (1956)
+|..|+..|.+.|++++|.++|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 4678899999999999999999998753
No 419
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=37.17 E-value=53 Score=42.14 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ------SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n------~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
+...|.+++.-+|+|..|++.++.. +++... .....+++.+|-+|+.+++|.+|++.|...+-
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788899999999999998664 111111 11256789999999999999999999999774
No 420
>KOG2280|consensus
Probab=37.00 E-value=1e+03 Score=33.07 Aligned_cols=102 Identities=8% Similarity=-0.033 Sum_probs=62.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.-+...|+..+|.++-.+. ++ |+ -..|......+...+++++-.+.-+. ...|-.|.-.-.+..+.|+.
T Consensus 692 ~~li~~g~~k~a~ql~~~F-ki-pd----Kr~~wLk~~aLa~~~kweeLekfAks-----kksPIGy~PFVe~c~~~~n~ 760 (829)
T KOG2280|consen 692 TTLILIGQNKRAEQLKSDF-KI-PD----KRLWWLKLTALADIKKWEELEKFAKS-----KKSPIGYLPFVEACLKQGNK 760 (829)
T ss_pred HHHHHccchHHHHHHHHhc-CC-cc----hhhHHHHHHHHHhhhhHHHHHHHHhc-----cCCCCCchhHHHHHHhcccH
Confidence 4455667777776654443 11 22 34555666677777777765544332 22244444555677788888
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~y 1854 (1956)
+||.+++-++-. .. .+..+|.+.|++.+|.+..
T Consensus 761 ~EA~KYiprv~~----l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 761 DEAKKYIPRVGG----LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HHHhhhhhccCC----hH----HHHHHHHHhccHHHHHHHH
Confidence 888888766422 11 5778888888888887653
No 421
>KOG0686|consensus
Probab=36.92 E-value=1.3e+02 Score=38.61 Aligned_cols=138 Identities=12% Similarity=-0.007 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDS 1797 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~--------Pdna 1797 (1956)
-.++..+|.-|...|+++.|++.|.++-............+.++-.+-..+|+|..-..+-.+|...- .-.+
T Consensus 150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~ 229 (466)
T KOG0686|consen 150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPA 229 (466)
T ss_pred HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCc
Confidence 34567799999999999999999999766654432235567777777888999988777777776541 0123
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhh--------CCCcHHHHHHHHHHH-HHcCCHH---HHHHHHHHHHHhcCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQL--------SPGFVRARYNLGITC-VHLGANT---QAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL--------~PdnaeA~~~LA~ay-~klGdyE---EAie~yekALeLdPd 1863 (1956)
.+...-|.+...+++|..|.++|-.+..- .|.+..+|-.|..+. +...++. ..-..|+..+++.|+
T Consensus 230 kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pq 307 (466)
T KOG0686|consen 230 KLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQ 307 (466)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChH
Confidence 45566677777888999999998776532 344444444432211 1111111 222456777777777
No 422
>KOG2063|consensus
Probab=35.82 E-value=9.1e+02 Score=34.44 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhcCCCCCCC--chh
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIE----PKNLEALMAISICFTNEACL--HDALDTLKDKIRPGQESNPR--PSA 1712 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLd----PdnaeAl~~LA~aY~~lGdy--dEALe~leKALelg~e~dPd--~ea 1712 (1956)
-+..|+..|...|++++|++.+.+..... +.....+-.+-..+..++.. +-..++-.-.+.. +|. ...
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~----~p~~gi~I 581 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNK----NPEAGIQI 581 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhcc----Cchhheee
Confidence 36788899999999999999999888733 33334444444545555544 5566666555555 554 111
Q ss_pred hhhhcCcchhh-hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc--------CCHHHHH
Q psy8682 1713 YKADALPSKLT-RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS--------DEYDKAV 1783 (1956)
Q Consensus 1713 y~~Ll~~~Kl~-e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l--------GdyeEAi 1783 (1956)
+... .. .....-...-.-|......+-++.+++.++...... ....+..++..|... ++-++|.
T Consensus 582 ft~~-----~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~--~~~lht~ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 582 FTSE-----DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT--STLLHTVLLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred eecc-----ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc--chHHHHHHHHHHHHHHhhccCchhccccch
Confidence 1110 00 000001112234556778888889999988776543 244455555554322 2223444
Q ss_pred HH--HHHHHHh-------CCC-------CHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1784 DC--FRSALQV-------RPD-------DSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1784 e~--fekALel-------~Pd-------naeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+. .++.... .|+ ....|...+.++.++|+.++|+..|-..+.
T Consensus 655 E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 44 2222221 121 145677788888899999999988877664
No 423
>PF12854 PPR_1: PPR repeat
Probab=35.79 E-value=52 Score=27.36 Aligned_cols=28 Identities=21% Similarity=0.129 Sum_probs=25.8
Q ss_pred ChHHHHHHHHHHhhcccHHHHHHHHHHH
Q psy8682 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSA 758 (1956)
Q Consensus 731 d~dV~~~La~Ly~~sgeyEkArelFerA 758 (1956)
|.-+|..|+.-|-+.|+++.|.++|++|
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 6778999999999999999999999986
No 424
>KOG4521|consensus
Probab=35.63 E-value=1.3e+03 Score=33.83 Aligned_cols=188 Identities=16% Similarity=0.090 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------HcCCh----HHHHHHHHHHHHhCCCCHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA------ENEQD----PQAIAALSKCLSIEPKNLE 1674 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~------~lGdy----eEALe~yeKALeLdPdnae 1674 (1956)
....+.+|.+|...|...+|+.+|.+|..-.... +++..+..-.. ..|+. ..|+.+|.+++
T Consensus 920 ~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~-~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~-------- 990 (1480)
T KOG4521|consen 920 PVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEG-NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVV-------- 990 (1480)
T ss_pred HHHHHhhheeeecCCchHHHHHHHHHHhhccccH-HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHH--------
Confidence 3466777888888888888888888876543221 12222221110 11211 12333333333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1675 Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
+++..-+-.+.+++...+|++. -|+. | +..+..+..+-+-+..+|.+-+|...+ -
T Consensus 991 ------rlle~hn~~E~vcQlA~~AIe~----l~dd--~---------ps~a~~~t~vFnhhldlgh~~qAy~ai----~ 1045 (1480)
T KOG4521|consen 991 ------RLLEEHNHAEEVCQLAVKAIEN----LPDD--N---------PSVALISTTVFNHHLDLGHWFQAYKAI----L 1045 (1480)
T ss_pred ------HHHHHhccHHHHHHHHHHHHHh----CCCc--c---------hhHHHHHHHHHHhhhchhhHHHHHHHH----H
Confidence 2344445566666666666665 2220 1 122233334445555666666665432 2
Q ss_pred hCCCCCCCHHHHHHHHHHHHHcCCHHH------------HHH-HHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHH-HH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNLSDEYDK------------AVD-CFRSALQVRPDD-SRLWNRLGASLANGNRPEEAV-EA 1819 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~lGdyeE------------Aie-~fekALel~Pdn-aeA~~nLG~ay~qlGryeEAi-e~ 1819 (1956)
.+|+.+.....+..+-.+++..|+++. -.. .++.+-+..|.. ...|..|=..+...+++.+|- .+
T Consensus 1046 ~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1046 RNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred cCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 344432233445555566666665432 222 223333333322 223333334445566666544 34
Q ss_pred HHHHHhh
Q psy8682 1820 YHTALQL 1826 (1956)
Q Consensus 1820 yeKALeL 1826 (1956)
|+.+..+
T Consensus 1126 YEyamrl 1132 (1480)
T KOG4521|consen 1126 YEYAMRL 1132 (1480)
T ss_pred HHHHHHh
Confidence 5555544
No 425
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=35.61 E-value=50 Score=28.72 Aligned_cols=30 Identities=27% Similarity=0.193 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
+++..||.+-...++|++|+..|++++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777664
No 426
>KOG0686|consensus
Probab=35.54 E-value=2.7e+02 Score=35.89 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.++..+|..|...|+.+.|++.|-++-.. ... .......+.++..+-...|+|..-..+..+|.
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdY----------CTs------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~ 214 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDY----------CTS------AKHVINMCLNLILVSIYMGNWGHVLSYISKAE 214 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhh----------hcc------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHH
Confidence 36778999999999999999999986555 111 23456677788888888999988888887776
Q ss_pred HhCCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1754 RQCPSQ-----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1754 el~P~n-----~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
..-..+ ...+.+...-|.+...+++|+.|.++|-.+.
T Consensus 215 st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 215 STPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred hCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 541000 1223455666777777889999999887654
No 427
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.82 E-value=51 Score=28.70 Aligned_cols=28 Identities=43% Similarity=0.380 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeL 1668 (1956)
++..||.+-...++|++|+.-|.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 4455555555555555555555555544
No 428
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=34.62 E-value=2e+02 Score=34.30 Aligned_cols=81 Identities=19% Similarity=0.078 Sum_probs=58.9
Q ss_pred ChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC
Q psy8682 1620 DLPSAILYLEAAAKQEPD------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK------NLEALMAISICFTNEA 1687 (1956)
Q Consensus 1620 dydEAIe~fekALeldPd------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd------naeAl~~LA~aY~~lG 1687 (1956)
.-...+.++.+|...... .......+|..|+..|++++|+++|+.+...... ...++..+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 344556777777654332 1335668999999999999999999999765432 2345677888899999
Q ss_pred CHHHHHHHHHHHH
Q psy8682 1688 CLHDALDTLKDKI 1700 (1956)
Q Consensus 1688 dydEALe~leKAL 1700 (1956)
+.+..+.+.-+++
T Consensus 233 ~~~~~l~~~leLl 245 (247)
T PF11817_consen 233 DVEDYLTTSLELL 245 (247)
T ss_pred CHHHHHHHHHHHh
Confidence 9998888776654
No 429
>KOG0276|consensus
Probab=34.30 E-value=1.7e+02 Score=39.14 Aligned_cols=78 Identities=19% Similarity=0.165 Sum_probs=55.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q 1809 (1956)
..++..+..+|-.++| +++.++. .-. -.+..+.|+++.|.+...+ .++..-|..||.+...
T Consensus 618 t~va~Fle~~g~~e~A-------L~~s~D~----d~r---Felal~lgrl~iA~~la~e-----~~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQA-------LELSTDP----DQR---FELALKLGRLDIAFDLAVE-----ANSEVKWRQLGDAALS 678 (794)
T ss_pred hhHHhHhhhccchHhh-------hhcCCCh----hhh---hhhhhhcCcHHHHHHHHHh-----hcchHHHHHHHHHHhh
Confidence 3455666666655555 5555553 222 2345688999999877655 4567789999999999
Q ss_pred CCChHHHHHHHHHHHhh
Q psy8682 1810 GNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL 1826 (1956)
.+++..|.++|.++-.+
T Consensus 679 ~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 679 AGELPLASECFLRARDL 695 (794)
T ss_pred cccchhHHHHHHhhcch
Confidence 99999999999998653
No 430
>KOG2063|consensus
Probab=32.55 E-value=1.4e+03 Score=32.80 Aligned_cols=174 Identities=9% Similarity=-0.022 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCh--HHHHHHHHHHHHhCCCCHH------
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQE----PDNAEVWLSLGISLAENEQD--PQAIAALSKCLSIEPKNLE------ 1674 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeld----PdnaeAl~~LA~ay~~lGdy--eEALe~yeKALeLdPdnae------ 1674 (1956)
-+..++..|...|+.++|++.+.+..... +.....+-..-..+...+.- +-..++-.=.++.+|....
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 47789999999999999999999998733 33333444433344444433 4444444444444443220
Q ss_pred ------H-HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH-HHHhcCCHHHHH
Q psy8682 1675 ------A-LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS-PLSSREIHQQVL 1746 (1956)
Q Consensus 1675 ------A-l~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~-ay~~lGdyeEAl 1746 (1956)
. -.....-|......+-++.+++.++.......+. +... ....|..... .-...++-++|.
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~---lht~--------ll~ly~e~v~~~~~~~~kg~e~~ 654 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTL---LHTV--------LLKLYLEKVLEQASTDGKGEEAP 654 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchH---HHHH--------HHHHHHHHHhhccCchhccccch
Confidence 0 0112223556677888899999988771111111 1111 1111111111 111122233444
Q ss_pred HH--HHHHHHh-------CCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1747 SL--YLNAARQ-------CPSQ----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1747 e~--LekALel-------~P~n----~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
+. .++.... .|.. ......|...+.++.++|+.++|+..|-..|.
T Consensus 655 E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~L~ 712 (877)
T KOG2063|consen 655 ETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHELD 712 (877)
T ss_pred hhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHHhc
Confidence 44 2222221 1211 01145677888889999999999988876553
No 431
>KOG1920|consensus
Probab=31.61 E-value=5.5e+02 Score=37.24 Aligned_cols=15 Identities=0% Similarity=0.118 Sum_probs=12.2
Q ss_pred ChhhhhhhHHHHHhc
Q psy8682 1573 LPHQWFSDFSRNQRS 1587 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~ 1587 (1956)
.....+++|++|+..
T Consensus 888 ~ID~~L~ry~~AL~h 902 (1265)
T KOG1920|consen 888 KIDDYLKRYEDALSH 902 (1265)
T ss_pred eHHHHHHHHHHHHHH
Confidence 467788899999887
No 432
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=30.33 E-value=1.7e+02 Score=34.84 Aligned_cols=62 Identities=23% Similarity=0.168 Sum_probs=56.0
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna 1673 (1956)
...+++.+...+|+...+.-++..|.+......+-.+|.-.|+|++|...++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 34567888999999999999999999999999999999999999999999999999988764
No 433
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=30.18 E-value=7.8e+02 Score=29.77 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=54.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
..-+.+.+...+|+...+.-++..|.+ ......+-.+|+-.|+|++|...++-+-.+.|++.
T Consensus 8 ~seLL~~~sL~dai~~a~~qVkakPtd---a~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 8 ISELLDDNSLQDAIGLARDQVKAKPTD---AGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHhccHHHHHHHHHHHHhcCCcc---ccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 356678889999999999999999998 77777788889999999999999999999998753
No 434
>PRK12798 chemotaxis protein; Reviewed
Probab=29.76 E-value=1.4e+03 Score=29.95 Aligned_cols=225 Identities=17% Similarity=0.077 Sum_probs=144.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHH-HHHcC
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAISIC-FTNEA 1687 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~LA~a-Y~~lG 1687 (1956)
-+.+|...|--.+.++. ++..+.. +.+.-..-|...+-.|+-.+|.+.+...-... |.....+..|... .....
T Consensus 86 Aa~iy~lSGGnP~vlr~---L~~~d~~~~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~ 162 (421)
T PRK12798 86 AALIYLLSGGNPATLRK---LLARDKLGNFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVAT 162 (421)
T ss_pred HHHhhHhcCCCHHHHHH---HHHcCCCChhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhccc
Confidence 45556556554444443 3444443 56666777888888999999998886643322 3333445555443 45567
Q ss_pred CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1688 CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN-HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1688 dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~-a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
+..+|+..|+.+--. .|. .+ ..+ ++..-..+....|+.+++..+-.+.+..+..+.+....+
T Consensus 163 dP~~Al~~lD~aRLl----aPG-----TL--------vEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~ 225 (421)
T PRK12798 163 DPATALKLLDQARLL----APG-----TL--------VEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFA 225 (421)
T ss_pred CHHHHHHHHHHHHHh----CCc-----hH--------HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHH
Confidence 899999999998777 665 01 111 122233455689999999999999998888773334444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh-CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC----cHHHHHHHHHH
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQV-RPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG----FVRARYNLGIT 1840 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel-~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd----naeA~~~LA~a 1840 (1956)
-.+...+...++-.. ...+...+.. +|. ...+|..++..-.-.|+.+-|.-.-++++.+... ...+.++-+.+
T Consensus 226 ~~F~~~~~~~~d~~~-~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa 304 (421)
T PRK12798 226 QRFVDLVVRLDDEIR-DARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAA 304 (421)
T ss_pred HHHHHHHHhcccccc-HHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHH
Confidence 444555544443222 2335555554 333 3578889999999999999999999999987532 34556666666
Q ss_pred HHHcCCHHHHHHHHHH
Q psy8682 1841 CVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1841 y~klGdyEEAie~yek 1856 (1956)
..-..++++|++.+.+
T Consensus 305 ~v~s~~~~~al~~L~~ 320 (421)
T PRK12798 305 LVASDDAESALEELSQ 320 (421)
T ss_pred ccCcccHHHHHHHHhc
Confidence 6666677777666554
No 435
>PRK11619 lytic murein transglycosylase; Provisional
Probab=28.67 E-value=1.7e+03 Score=30.69 Aligned_cols=257 Identities=10% Similarity=-0.057 Sum_probs=132.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy8682 1627 YLEAAAKQEPDNAEVWLSLGISLA---ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1627 ~fekALeldPdnaeAl~~LA~ay~---~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg 1703 (1956)
-+...++.+|+.+..-........ +.+++..-+..+ ...|.+....+.++.+....|+.++|.....++-..+
T Consensus 84 ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~----~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 84 QVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFS----PEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred HHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhc----CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 344445667776655544444333 344555444422 2347777777888888888899888877777765542
Q ss_pred CCCCCC--chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH-------------HHhCCCC--------C
Q psy8682 1704 QESNPR--PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA-------------ARQCPSQ--------S 1760 (1956)
Q Consensus 1704 ~e~dPd--~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA-------------Lel~P~n--------~ 1760 (1956)
. ..|+ ...+....... .-....+..........|+...|..+.... +..+|.. .
T Consensus 160 ~-~~p~~cd~l~~~~~~~g--~lt~~d~w~R~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~~p~~~~~~~~~~~ 236 (644)
T PRK11619 160 K-SLPNACDKLFSVWQQSG--KQDPLAYLERIRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQNDPNTVETFARTTG 236 (644)
T ss_pred C-CCChHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHHCHHHHHHHhhccC
Confidence 2 1233 11111111000 001111222233333334433333222211 1111211 0
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1761 --IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1761 --~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn----aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
....-...++.......+.+.|...+.+......-. ..++..+|.-....+...+|...+..+..... +....
T Consensus 237 ~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~-~~~~~ 315 (644)
T PRK11619 237 PTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ-STSLL 315 (644)
T ss_pred CChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC-CcHHH
Confidence 001122233433445667788888888764444322 23444555544444446788888887654322 22333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
.....+....++.+.+...+...-....+.....|-+|..+...|+..++- ..++.+
T Consensus 316 e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~-~~~~~~ 372 (644)
T PRK11619 316 ERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAE-EILRQL 372 (644)
T ss_pred HHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 333445558888888877777754433455667888888877788886665 445544
No 436
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=28.67 E-value=1.3e+02 Score=33.41 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+..+..+...+..|++.-|..+...++..+|++..+...++.++.++|
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 3466677777777777777777777777777777777777777766554
No 437
>PRK12798 chemotaxis protein; Reviewed
Probab=28.30 E-value=1.5e+03 Score=29.75 Aligned_cols=201 Identities=15% Similarity=0.107 Sum_probs=128.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHH-HHHHcCChHHHHHHHHHHHHhCCCCH---HHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGI-SLAENEQDPQAIAALSKCLSIEPKNL---EALMA 1678 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~-ay~~lGdyeEALe~yeKALeLdPdna---eAl~~ 1678 (1956)
..+.-+..|...|-.|+-.+|.+.+..+-... |...-.+..|.. ..+...+..+|+..|+.+--+.|... -++..
T Consensus 111 ~~d~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLlaPGTLvEEAALRR 190 (421)
T PRK12798 111 NFDQRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLLAPGTLVEEAALRR 190 (421)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 44566677778888999999999887653322 222334444433 44566789999999999988888754 23444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CC
Q psy8682 1679 ISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-CP 1757 (1956)
Q Consensus 1679 LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-~P 1757 (1956)
-..+....|+.+++..+-.+.+.. |..-. -.......+...+....+-.. ...+...+.. +|
T Consensus 191 si~la~~~g~~~rf~~la~~Y~rR----------F~~S~------YA~~F~~~F~~~~~~~~d~~~-~~~l~~~ls~~d~ 253 (421)
T PRK12798 191 SLFIAAQLGDADKFEALARNYLRR----------FRHSP------YASQFAQRFVDLVVRLDDEIR-DARLVEILSFMDP 253 (421)
T ss_pred hhHHHHhcCcHHHHHHHHHHHHHH----------hccCc------hHHHHHHHHHHHHHhcccccc-HHHHHHHHHhcCc
Confidence 444557889999998888888776 22211 111112222333333322221 1235555554 44
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----DSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----naeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
.. ...+|..+++.-.-.|+.+-|...-++++.+... ...+....|.+..-..++++|+..+...
T Consensus 254 ~~--q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 254 ER--QRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred hh--HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 33 4678999999999999999999999999988633 3455555566666667777777766553
No 438
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.13 E-value=9.6e+02 Score=30.61 Aligned_cols=30 Identities=3% Similarity=-0.223 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
.-..+.+|.-|+...+++.|+--++++...
T Consensus 125 ~~~n~YkaLNYm~~nD~~~ArVEfnRan~r 154 (449)
T COG3014 125 VLINYYKALNYMLLNDSAKARVEFNRANER 154 (449)
T ss_pred HHHHHHHHhhHHHhcchhhhHHHHHHHHHH
Confidence 334566777788888888888777777654
No 439
>KOG4521|consensus
Probab=26.90 E-value=1.4e+03 Score=33.51 Aligned_cols=214 Identities=15% Similarity=0.044 Sum_probs=120.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH------
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT------ 1684 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~------ 1684 (1956)
+..++-+.+|..-..++.-...-. -..+...+.+|.+|...|+..+|+.+|.+|..-..... ++..+..-..
T Consensus 892 pe~lfg~cqy~~lqdy~~llh~wc~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~ge~~-aL~~lv~~~~p~~~sv 970 (1480)
T KOG4521|consen 892 PERLFGQCQYKVLQDYLNLLHSWCRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALSGFGEGN-ALRKLVYFLLPKRFSV 970 (1480)
T ss_pred hhhhhcchhHHHHHHHHHHhhhhhhhhHHHHHHhhheeeecCCchHHHHHHHHHHhhccccHH-HHHHHHHHhcCCCCch
Confidence 334444444554444443322110 12345678899999999999999999999987543322 3333322111
Q ss_pred HcCC----HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-
Q psy8682 1685 NEAC----LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ- 1759 (1956)
Q Consensus 1685 ~lGd----ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n- 1759 (1956)
..|+ -..|+.||.++ -.++..-+..+.+.+...+|++.-|++
T Consensus 971 ~dG~t~s~e~t~lhYYlkv---------------------------------~rlle~hn~~E~vcQlA~~AIe~l~dd~ 1017 (1480)
T KOG4521|consen 971 ADGKTPSEELTALHYYLKV---------------------------------VRLLEEHNHAEEVCQLAVKAIENLPDDN 1017 (1480)
T ss_pred hcCCCCCchHHHHHHHHHH---------------------------------HHHHHHhccHHHHHHHHHHHHHhCCCcc
Confidence 1111 11123333333 344556677788888888888876655
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChH------------HHHH-HHHHH
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS---RLWNRLGASLANGNRPE------------EAVE-AYHTA 1823 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna---eA~~nLG~ay~qlGrye------------EAie-~yeKA 1823 (1956)
+..+..+..+=.-+..+|.+-+|...+ -.+|+.. ..+..+-.++++.|+.+ +-.. .++.+
T Consensus 1018 ps~a~~~t~vFnhhldlgh~~qAy~ai----~~npdserrrdcLRqlvivLfecg~l~~L~~fpfigl~~eve~~l~esa 1093 (1480)
T KOG4521|consen 1018 PSVALISTTVFNHHLDLGHWFQAYKAI----LRNPDSERRRDCLRQLVIVLFECGELEALATFPFIGLEQEVEDFLRESA 1093 (1480)
T ss_pred hhHHHHHHHHHHhhhchhhHHHHHHHH----HcCCcHHHHHHHHHHHHHHHHhccchHHHhhCCccchHHHHHHHHHHHH
Confidence 223444555555566778888776543 3445532 34566677777777654 2233 33444
Q ss_pred HhhCCCcH-HHHHHHHHHHHHcCCHHHHH-HHHHHHHHhcCC
Q psy8682 1824 LQLSPGFV-RARYNLGITCVHLGANTQAV-EHFLTALNQQAA 1863 (1956)
Q Consensus 1824 LeL~Pdna-eA~~~LA~ay~klGdyEEAi-e~yekALeLdPd 1863 (1956)
-...|-.. ..|..|-..+...+++.+|- .+|+.+.++..+
T Consensus 1094 aRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyamrl~se 1135 (1480)
T KOG4521|consen 1094 ARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAMRLESE 1135 (1480)
T ss_pred hhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHHHhccc
Confidence 44344332 23444445566777776654 568888888765
No 440
>KOG4279|consensus
Probab=26.81 E-value=1.8e+02 Score=39.55 Aligned_cols=180 Identities=13% Similarity=0.176 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH---HhcCCHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL---SSREIHQQVLSLY 1749 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay---~~lGdyeEAle~L 1749 (1956)
++...++-..|....+|+.-++..+..-++ |+ -..+. +.....+..+-++ ..-|+-++|+...
T Consensus 201 ~d~V~nlmlSyRDvQdY~amirLVe~Lk~i-----P~---t~~vv------e~~nv~f~YaFALNRRNr~GDRakAL~~~ 266 (1226)
T KOG4279|consen 201 PDTVSNLMLSYRDVQDYDAMIRLVEDLKRI-----PD---TLKVV------ETHNVRFHYAFALNRRNRPGDRAKALNTV 266 (1226)
T ss_pred HHHHHHHHhhhccccchHHHHHHHHHHHhC-----cc---hhhhh------ccCceEEEeeehhcccCCCccHHHHHHHH
Confidence 445566666777777777777776665554 32 01111 0000011112222 2457888899888
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-hHHHHHH
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLS---------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR-PEEAVEA 1819 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~l---------GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr-yeEAie~ 1819 (1956)
-.+++.... ..++.+..-|++|..+ +..+.|+++|++|.+..|... .-.+++.++...|+ ++...+.
T Consensus 267 l~lve~eg~--vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~-sGIN~atLL~aaG~~Fens~El 343 (1226)
T KOG4279|consen 267 LPLVEKEGP--VAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEY-SGINLATLLRAAGEHFENSLEL 343 (1226)
T ss_pred HHHHHhcCC--CCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhh-ccccHHHHHHHhhhhccchHHH
Confidence 888876533 2466788888887543 556789999999999988642 22345555554443 3333333
Q ss_pred HHHHHhhCC-----C---cHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1820 YHTALQLSP-----G---FVRARYNLGIT---CVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1820 yeKALeL~P-----d---naeA~~~LA~a---y~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
-.-...++. . ....|...|.. -.-.++|.+|+..-+...++.|- +||...
T Consensus 344 q~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P---~WYLkS 404 (1226)
T KOG4279|consen 344 QQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPP---VWYLKS 404 (1226)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCc---eehHHH
Confidence 222222211 1 11122222221 23357899999999999999887 776553
No 441
>PF13041 PPR_2: PPR repeat family
Probab=26.12 E-value=2.1e+02 Score=25.23 Aligned_cols=24 Identities=8% Similarity=-0.007 Sum_probs=9.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 1643 LSLGISLAENEQDPQAIAALSKCL 1666 (1956)
Q Consensus 1643 ~~LA~ay~~lGdyeEALe~yeKAL 1666 (1956)
..+-..|.+.|++++|.++|++..
T Consensus 7 n~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 7 NTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 333333444444444444444333
No 442
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=25.88 E-value=1.1e+03 Score=32.42 Aligned_cols=86 Identities=19% Similarity=0.076 Sum_probs=31.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHH---HHH---
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAIS---ICF--- 1683 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA---~aY--- 1683 (1956)
..-.++.-.|+|+.|+.++-+ .+.+..--..+|.++...|-+.-.-..-...+..++.++.. .+++ ..|
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~----~~~~~~dAVH~AIaL~~~gLL~~~~~~~~~lls~~~~~~~~-ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR----NEFNRVDAVHFAIALAYYGLLRVSDSSSAPLLSVDPGDPPP-LNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT------T-HHHHHHHHHHHHHTT-------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh----hccCcccHHHHHHHHHHcCCCCCCCccccceeeecCCCCCC-cCHHHHHHHHHHH
Confidence 344567789999999999877 12222212223344443443332222224445444443221 2222 222
Q ss_pred HHcCCHHHHHHHHHHHH
Q psy8682 1684 TNEACLHDALDTLKDKI 1700 (1956)
Q Consensus 1684 ~~lGdydEALe~leKAL 1700 (1956)
+...+..+|++||--+-
T Consensus 338 F~~td~~~Al~Y~~li~ 354 (613)
T PF04097_consen 338 FEITDPREALQYLYLIC 354 (613)
T ss_dssp TTTT-HHHHHHHHHGGG
T ss_pred HhccCHHHHHHHHHHHH
Confidence 23467777877775443
No 443
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=25.72 E-value=6.6e+02 Score=31.67 Aligned_cols=149 Identities=13% Similarity=0.005 Sum_probs=0.0
Q ss_pred HHHHHhchhhHhHhhhhc---cCCCccHHHHHHHHHHHHH-------cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAE---DNPMQNETNAFALGQEKLR-------QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA 1650 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p---~NP~~daeall~LG~aylk-------~GdydEAIe~fekALeldPdnaeAl~~LA~ay~ 1650 (1956)
..+.+.. |...+.... .+.....+..+..+..+.. ....-+|+.+++.++..+|.+......+..+|.
T Consensus 151 ~~~~~~~--y~~~l~~~~~l~te~~~~d~~~lla~~~Ll~~~~~~~~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~ 228 (365)
T PF09797_consen 151 AQELLKL--YQESLSLGKDLKTESQPADELALLAAHSLLDLYSKTKDSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYS 228 (365)
T ss_pred HHHHHHH--HHhhCccccccccccCchHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL-DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEAL-e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
..|-...|...|...--..-..-..-+.+..-+...|.+..+. ..+..+... ......-.
T Consensus 229 ~LG~~~~A~~~~~~L~iK~IQ~DTL~h~~~~r~~~~~~~~~~~~~~~~~~~~f-------------------y~~~~~~~ 289 (365)
T PF09797_consen 229 LLGAGSLALEHYESLDIKNIQLDTLGHLILDRLSTLGPFKSAPENLLENALKF-------------------YDNSEKET 289 (365)
T ss_pred HcCCHHHHHHHHHhcChHHHHHHHhHHHHHHHHhccCcccccchHHHHHHHHH-------------------HHHHHHHH
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q psy8682 1730 LTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1730 lnLA~ay~~lGdyeEAle~Le 1750 (1956)
.......++.|.|.+..+..+
T Consensus 290 ~e~i~~af~~gsysKi~ef~~ 310 (365)
T PF09797_consen 290 PEFIIKAFENGSYSKIEEFIE 310 (365)
T ss_pred HHHHHHHHhCCCchhHHHHHH
No 444
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=25.36 E-value=1.4e+03 Score=28.63 Aligned_cols=98 Identities=11% Similarity=0.011 Sum_probs=54.0
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+...|+...|.++-.+ .++ |+ ...|...-.++...++|++-...... ...|-.|.-...++...|+..+
T Consensus 187 li~~~~~k~A~kl~k~-Fkv-~d----krfw~lki~aLa~~~~w~eL~~fa~s-----kKsPIGyepFv~~~~~~~~~~e 255 (319)
T PF04840_consen 187 LIEMGQEKQAEKLKKE-FKV-PD----KRFWWLKIKALAENKDWDELEKFAKS-----KKSPIGYEPFVEACLKYGNKKE 255 (319)
T ss_pred HHHCCCHHHHHHHHHH-cCC-cH----HHHHHHHHHHHHhcCCHHHHHHHHhC-----CCCCCChHHHHHHHHHCCCHHH
Confidence 3455665555544222 222 21 44566666777777777765544321 2233445555566667777777
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
|..+..++ ++ ......|.+.|++.+|.+.
T Consensus 256 A~~yI~k~----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 256 ASKYIPKI----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HHHHHHhC----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 77776661 11 3455566777777777544
No 445
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=25.09 E-value=1.2e+02 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRAR 833 (1956)
Q Consensus 801 lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErAR 833 (1956)
.|.++|...|.....++-||+|...+|+.++|.
T Consensus 4 all~AI~~~P~ddt~RLvYADWL~e~gdp~rae 36 (42)
T TIGR02996 4 ALLRAILAHPDDDTPRLVYADWLDEHGDPARAE 36 (42)
T ss_pred HHHHHHHhCCCCcchHHHHHHHHHHcCCHHHHh
Confidence 355556555666666777777777777666554
No 446
>TIGR03362 VI_chp_7 type VI secretion-associated protein, VC_A0119 family. This protein family is one of two related families in type VI secretion systems that contain an ImpA-related N-terminal domain (pfam06812).
Probab=25.08 E-value=1.4e+03 Score=28.51 Aligned_cols=48 Identities=13% Similarity=-0.014 Sum_probs=37.7
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1617 RQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1617 k~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
..+++.+.+...++.+..+|.-.+..+..+.++.++| +..+.......
T Consensus 111 ~~~~~~~Ll~~~E~sl~~~pfWLDgq~~~~qal~~lG-~~~~a~aI~~e 158 (301)
T TIGR03362 111 AQADWAALLQRVEQSLSLAPFWLDGQRLSAQALERLG-YAAVAQAIRDE 158 (301)
T ss_pred hCCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHCC-CHHHHHHHHHH
Confidence 6677888999999999888888888999999999999 45555444433
No 447
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=24.95 E-value=2e+02 Score=28.86 Aligned_cols=22 Identities=18% Similarity=0.344 Sum_probs=11.9
Q ss_pred HHHHHHHCCChHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKAL 1824 (1956)
.|.-+-+.|++.+|+.+|++++
T Consensus 12 ~AVe~D~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 12 NAVKAEKEGNAEDAITNYKKAI 33 (75)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH
Confidence 3334445566666666655543
No 448
>KOG0687|consensus
Probab=24.87 E-value=1e+03 Score=30.21 Aligned_cols=108 Identities=8% Similarity=0.051 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
.+++.++|..|.+.|+-+.|.+.+.+..+. . ..+... -+..-....+|..|....-..+.++..+..
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~k----t------vs~g~k---iDVvf~~iRlglfy~D~~lV~~~iekak~l 170 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEK----T------VSLGHK---IDVVFYKIRLGLFYLDHDLVTESIEKAKSL 170 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH----H------hhcccc---hhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 467888888899999999998888877665 1 111100 122333445666666554444444444444
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~ 1793 (1956)
++...+-.-.-......|.......++.+|...|-.++...
T Consensus 171 iE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 171 IEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 44432210011233444555666778888888887777554
No 449
>KOG1166|consensus
Probab=24.61 E-value=9.6e+02 Score=34.64 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=74.7
Q ss_pred HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhc------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy8682 766 TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKN------RMVISNWIKYAQWEESQKQVDRARSIYERA 839 (1956)
Q Consensus 766 ~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~------~~s~~lWlkYAqfE~~~Gd~ErARsIfERA 839 (1956)
...|.+|+.-+....+..+. + ..-.+.+.++|+... +....+...|..++. ......++.+|..+
T Consensus 34 l~~w~ryi~wv~~~~~~~~~-~-------~~~l~~~lerc~~~~~~lk~Y~nD~Rfl~~~~~~~~-~e~~~d~~d~f~~m 104 (974)
T KOG1166|consen 34 LDKWLRYIEWVLEVYPEGKE-N-------QSLLRNLLERCLEELEDLKRYRNDPRFLILWCSLEL-REELQDAEDFFSYL 104 (974)
T ss_pred hhhhHhHhhhhhhccccCCc-h-------hhhHHHHHHHHHHhccchhhccccHHHHHHHHhHHH-HHHHhhHHHHHHHH
Confidence 57999999887744432222 1 223445556555332 222333333332222 22456677777776
Q ss_pred hc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC
Q psy8682 840 LD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTIL--PRANQFWYKYTYMEEMLE 895 (1956)
Q Consensus 840 Ls--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~--Pks~~LW~kYidfE~k~G 895 (1956)
.. .-+....++..|+.+.++.+.+++|+.+|..+++.. |. ..+=..|..|..+.+
T Consensus 105 ~~kgIg~~lalfYe~~a~~lE~k~~~keA~~v~q~Giq~~aeP~-~rL~~~~~~F~~r~~ 163 (974)
T KOG1166|consen 105 ENKGIGTTLALFYEAYAKHLERKEYFKEAKEVFQLGIQNKAEPL-ERLLRQYSNFQQRLM 163 (974)
T ss_pred HhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHh
Confidence 66 456667778888888888888999999999998843 33 356567777776654
No 450
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=24.54 E-value=1.6e+03 Score=28.84 Aligned_cols=133 Identities=13% Similarity=0.040 Sum_probs=77.2
Q ss_pred HcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1651 ENEQDPQAIAALSKCLSIE-PKNLEALMAISICFTNE-----ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeLd-PdnaeAl~~LA~aY~~l-----GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
..+-.+++...+.+++... |.-....-.++.++... -++..-..+|+-.... .|+
T Consensus 268 ~r~lI~eg~all~rA~~~~~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~----apS--------------- 328 (415)
T COG4941 268 DRALIDEGLALLDRALASRRPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA----APS--------------- 328 (415)
T ss_pred hHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh----CCC---------------
Confidence 3344567788888887764 33333333444443322 2455555555555555 444
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
+-.-.|.+.......-...++...+..... |.-......+...|.++.++|+.++|...|++++.+.++..+..+.+.
T Consensus 329 -PvV~LNRAVAla~~~Gp~agLa~ve~L~~~-~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~l~~ 406 (415)
T COG4941 329 -PVVTLNRAVALAMREGPAAGLAMVEALLAR-PRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAFLRQ 406 (415)
T ss_pred -CeEeehHHHHHHHhhhHHhHHHHHHHhhcc-cccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHHHHH
Confidence 011233444444444555566655554433 111012446677889999999999999999999999888776554443
No 451
>KOG4279|consensus
Probab=24.52 E-value=3.3e+02 Score=37.37 Aligned_cols=70 Identities=17% Similarity=0.226 Sum_probs=45.7
Q ss_pred cCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH---------cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1618 QGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAE---------NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~---------lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG 1687 (1956)
.|+-++|+...-.+++.. |-.++.+...|.+|.. .+..+.|++.|++|.+..|.... =.+++.++...|
T Consensus 256 ~GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG 334 (1226)
T KOG4279|consen 256 PGDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAG 334 (1226)
T ss_pred CccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhh
Confidence 467888888877777654 3345666666776653 35567888888888888876432 235555555555
Q ss_pred C
Q psy8682 1688 C 1688 (1956)
Q Consensus 1688 d 1688 (1956)
+
T Consensus 335 ~ 335 (1226)
T KOG4279|consen 335 E 335 (1226)
T ss_pred h
Confidence 3
No 452
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=24.25 E-value=8.8e+02 Score=25.80 Aligned_cols=49 Identities=24% Similarity=0.201 Sum_probs=36.4
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHH
Q psy8682 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663 (1956)
Q Consensus 1614 aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~ye 1663 (1956)
.+...+.....+.+++.++..++.++.....+..+|...+ ..+.++.+.
T Consensus 16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~ 64 (140)
T smart00299 16 LFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLD 64 (140)
T ss_pred HHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHH
Confidence 3445678999999999999988878888888888887653 344455554
No 453
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=24.12 E-value=1e+02 Score=27.63 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1834 RYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1834 ~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
.+.||.+|..+|+++.|.+.+++++.
T Consensus 2 kLdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCChHHHHHHHHHHHH
Confidence 36789999999999999999999884
No 454
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=23.68 E-value=1.1e+02 Score=24.04 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhh
Q psy8682 734 VQNGLGVLFNLSDEYDKAVDCFRSALQV 761 (1956)
Q Consensus 734 V~~~La~Ly~~sgeyEkArelFerALkk 761 (1956)
+|..++.-|.+.|++++|.++|.++...
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 4677888999999999999999998764
No 455
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=1.1e+03 Score=29.61 Aligned_cols=130 Identities=10% Similarity=0.091 Sum_probs=80.3
Q ss_pred cCChHHHHHHHHHHHHh-CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1652 NEQDPQAIAALSKCLSI-EPK-----NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1652 lGdyeEALe~yeKALeL-dPd-----naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
.+.-++-++-+.+.++. ..+ ..+++.++|..|.+.++.+.+.+.+.+.++. .-. .... -+.
T Consensus 88 ~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~----a~s------tg~K---iDv 154 (412)
T COG5187 88 LKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRD----AMS------TGLK---IDV 154 (412)
T ss_pred HHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH----HHh------cccc---hhh
Confidence 34444555556444433 222 3578999999999999999999999888776 111 1100 112
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.-.-..+|.+|....-.++.++.....++...+-.-.-......|.......++.+|...+-..+....
T Consensus 155 ~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 155 FLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 223345677776666667777777777766543211123334456666777888888888888776543
No 456
>KOG1497|consensus
Probab=21.96 E-value=1.7e+03 Score=28.33 Aligned_cols=100 Identities=14% Similarity=0.060 Sum_probs=68.0
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ-----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ--VRPDDS 1797 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n-----~~~a~a~~~LG~ly~~lGdyeEAie~fekALe--l~Pdna 1797 (1956)
.......+|.+|.+.+++..|...+.-. .++... ......+..+|.+|...++..+|..+..++-- .+..+.
T Consensus 102 v~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~Ne 180 (399)
T KOG1497|consen 102 VASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSNE 180 (399)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccCH
Confidence 3456678999999999999998776443 222111 12355678899999999999999999888642 234555
Q ss_pred HHHHHH----HHHHHHCCChHHHHHHHHHHHh
Q psy8682 1798 RLWNRL----GASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1798 eA~~nL----G~ay~qlGryeEAie~yeKALe 1825 (1956)
.....+ |+++-..+++-+|...|.+...
T Consensus 181 ~Lqie~kvc~ARvlD~krkFlEAAqrYyels~ 212 (399)
T KOG1497|consen 181 QLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ 212 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554443 4555567777777777766544
No 457
>PF12854 PPR_1: PPR repeat
Probab=21.60 E-value=1.6e+02 Score=24.54 Aligned_cols=23 Identities=26% Similarity=0.404 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHCCChHHHHHHHH
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYH 1821 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~ye 1821 (1956)
.|..+-..|.+.|+.++|.+.|+
T Consensus 9 ty~~lI~~~Ck~G~~~~A~~l~~ 31 (34)
T PF12854_consen 9 TYNTLIDGYCKAGRVDEAFELFD 31 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34444444444444444444443
No 458
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.04 E-value=1.8e+02 Score=30.72 Aligned_cols=45 Identities=22% Similarity=0.366 Sum_probs=38.4
Q ss_pred CCChHHHHHHHHHHhhcccHHHHHHHHHHHHhhCCCCHHHHHHHHhhcc
Q psy8682 729 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLD 777 (1956)
Q Consensus 729 ~~d~dV~~~La~Ly~~sgeyEkArelFerALkkfP~d~~IWl~ylsfL~ 777 (1956)
++.|-.|-+||.||..+|+-|.|..-|++--..||.+- .|+.||+
T Consensus 69 ~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~----~fmDFLm 113 (121)
T COG4259 69 AVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG----VFMDFLM 113 (121)
T ss_pred CCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch----hHHHHHH
Confidence 46799999999999999999999999999888899883 3456665
No 459
>KOG0687|consensus
Probab=20.49 E-value=7e+02 Score=31.63 Aligned_cols=105 Identities=11% Similarity=0.107 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchh
Q psy8682 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEP------KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712 (1956)
Q Consensus 1639 aeAl~~LA~ay~~lGdyeEALe~yeKALeLdP------dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~ea 1712 (1956)
.+++..+|..|.+.|+-+.|++.+.+..+..- +-.-....+|..|....-..+.++..+..++. .-+
T Consensus 104 ~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~----GgD--- 176 (393)
T KOG0687|consen 104 REAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEE----GGD--- 176 (393)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh----CCC---
Confidence 57899999999999999999999988766431 22223456777777766666777777777766 222
Q ss_pred hhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1713 y~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
|..-. .. -..-|...+...++.+|..+|..++......
T Consensus 177 WeRrN-------Rl--KvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~ 214 (393)
T KOG0687|consen 177 WERRN-------RL--KVYQGLYCMSVRNFKEAADLFLDSVSTFTSY 214 (393)
T ss_pred hhhhh-------hH--HHHHHHHHHHHHhHHHHHHHHHHHcccccce
Confidence 22211 11 1224556667788999999998887665443
No 460
>KOG4322|consensus
Probab=20.20 E-value=6.5e+02 Score=32.90 Aligned_cols=179 Identities=11% Similarity=-0.022 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCC
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSI------EPK 1671 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeL------dPd 1671 (1956)
..+..+..+.++....++..|...+.++.-....- ..++..++.++.+.+..-.+..+.-+++.. +-.
T Consensus 272 svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl 351 (482)
T KOG4322|consen 272 SVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYL 351 (482)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchh
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH------hcCCHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS------SREIHQQV 1745 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~------~lGdyeEA 1745 (1956)
...+-..+|.....+|..++|+..+..++.. +.....+.+.+.++...++++. ...+.+.+
T Consensus 352 ~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~-------------Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~ 418 (482)
T KOG4322|consen 352 EANENLDLALEHLALGSPKAALPLLHTAVHL-------------ILVQGGLDDRARAIFVFANCTLAFALSCANESLDGF 418 (482)
T ss_pred hhhchHHHHHHHHHcCChHHHHHHHHhhhhH-------------HHhccchhhcceeEEEEEeeeecchhhhhhhhHHhh
Q ss_pred HHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCC
Q psy8682 1746 LSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDE---YDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1746 le~LekALel~P~n---~~~a~a~~~LG~ly~~lGd---yeEAie~fekALel~Pd 1795 (1956)
...+++|-.....- +...++.+.++..|-..|+ -+++...|+++..--|.
T Consensus 419 ~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~le~ 474 (482)
T KOG4322|consen 419 PRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRYLEL 474 (482)
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHhcCC
Done!