Query psy8682
Match_columns 1956
No_of_seqs 1232 out of 4950
Neff 5.3
Searched_HMMs 29240
Date Sat Aug 17 01:07:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8682.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8682hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1fch_A Peroxisomal targeting s 100.0 3.1E-29 1.1E-33 291.5 28.4 329 1549-1893 13-357 (368)
2 1w3b_A UDP-N-acetylglucosamine 100.0 3.3E-28 1.1E-32 287.7 34.9 334 1505-1899 5-338 (388)
3 1w3b_A UDP-N-acetylglucosamine 100.0 3.7E-28 1.3E-32 287.3 33.2 331 1507-1898 41-371 (388)
4 4eqf_A PEX5-related protein; a 100.0 1.1E-28 3.7E-33 289.0 28.0 315 1549-1882 15-344 (365)
5 3ieg_A DNAJ homolog subfamily 100.0 1.3E-25 4.5E-30 257.4 36.2 297 1574-1899 12-339 (359)
6 3ieg_A DNAJ homolog subfamily 99.9 3E-25 1E-29 254.3 34.1 313 1506-1878 10-353 (359)
7 3hym_B Cell division cycle pro 99.9 1.5E-25 5E-30 255.1 30.5 278 1576-1881 33-321 (330)
8 3hym_B Cell division cycle pro 99.9 3.3E-25 1.1E-29 252.2 32.8 276 1597-1899 18-303 (330)
9 2y4t_A DNAJ homolog subfamily 99.9 6E-25 2.1E-29 263.1 34.8 297 1574-1899 35-362 (450)
10 2y4t_A DNAJ homolog subfamily 99.9 4.3E-25 1.5E-29 264.4 33.2 310 1506-1875 33-373 (450)
11 2xpi_A Anaphase-promoting comp 99.9 1.4E-24 4.7E-29 270.0 35.6 310 1506-1876 279-595 (597)
12 2xpi_A Anaphase-promoting comp 99.9 7.4E-25 2.5E-29 272.4 32.1 297 1573-1899 280-583 (597)
13 3cv0_A Peroxisome targeting si 99.9 4.6E-25 1.6E-29 250.7 26.9 293 1593-1896 9-316 (327)
14 2gw1_A Mitochondrial precursor 99.9 2.3E-24 8E-29 260.9 24.6 347 1506-1899 13-482 (514)
15 3uq3_A Heat shock protein STI1 99.9 2.6E-23 9E-28 228.2 26.9 238 1604-1872 4-254 (258)
16 3fp2_A TPR repeat-containing p 99.9 2.8E-23 9.6E-28 253.9 29.9 285 1604-1898 24-410 (537)
17 3fp2_A TPR repeat-containing p 99.9 4.7E-23 1.6E-27 251.9 31.9 297 1573-1899 33-461 (537)
18 1fch_A Peroxisomal targeting s 99.9 1.8E-23 6.1E-28 243.2 26.8 262 1574-1862 73-361 (368)
19 4g1t_A Interferon-induced prot 99.9 3.7E-23 1.3E-27 250.1 26.9 345 1506-1898 58-462 (472)
20 2gw1_A Mitochondrial precursor 99.9 9.3E-23 3.2E-27 246.9 30.3 305 1573-1899 14-405 (514)
21 2h6f_A Protein farnesyltransfe 99.9 2.5E-23 8.6E-28 252.7 25.2 250 1604-1876 96-364 (382)
22 3u4t_A TPR repeat-containing p 99.9 3.9E-23 1.3E-27 230.6 23.6 251 1604-1877 2-267 (272)
23 3cv0_A Peroxisome targeting si 99.9 6.4E-23 2.2E-27 233.0 24.5 261 1576-1864 32-319 (327)
24 4eqf_A PEX5-related protein; a 99.9 4.4E-23 1.5E-27 241.5 23.6 260 1574-1859 74-355 (365)
25 2ooe_A Cleavage stimulation fa 99.9 1E-20 3.5E-25 235.7 45.6 156 754-924 1-177 (530)
26 4g1t_A Interferon-induced prot 99.9 2.7E-21 9.1E-26 233.9 29.8 342 1573-1943 59-446 (472)
27 2pl2_A Hypothetical conserved 99.9 1.7E-21 5.9E-26 215.8 23.5 209 1604-1858 4-212 (217)
28 3sf4_A G-protein-signaling mod 99.9 4.7E-22 1.6E-26 232.9 17.8 295 1574-1883 18-365 (406)
29 3sf4_A G-protein-signaling mod 99.9 1.8E-21 6.2E-26 227.9 22.0 283 1601-1897 5-338 (406)
30 2pl2_A Hypothetical conserved 99.9 5.2E-21 1.8E-25 212.0 24.4 197 1576-1824 16-212 (217)
31 2h6f_A Protein farnesyltransfe 99.9 1.1E-21 3.6E-26 238.5 20.4 226 1631-1879 89-323 (382)
32 4e6h_A MRNA 3'-END-processing 99.9 2.3E-21 7.7E-26 251.1 22.1 252 681-953 298-580 (679)
33 4a1s_A PINS, partner of inscut 99.9 2.6E-21 8.9E-26 229.3 20.4 281 1604-1898 47-375 (411)
34 3ro2_A PINS homolog, G-protein 99.9 3.3E-21 1.1E-25 217.4 20.1 281 1604-1898 4-335 (338)
35 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-20 6.6E-25 204.5 24.1 216 1604-1841 22-237 (243)
36 2q7f_A YRRB protein; TPR, prot 99.9 1.9E-20 6.4E-25 204.6 23.8 220 1638-1879 22-241 (243)
37 3uq3_A Heat shock protein STI1 99.9 9.6E-20 3.3E-24 199.9 28.8 231 1573-1840 13-256 (258)
38 3u4t_A TPR repeat-containing p 99.9 1.5E-20 5.1E-25 209.7 22.7 242 1638-1899 2-254 (272)
39 3mkr_A Coatomer subunit epsilo 99.9 5.7E-20 2E-24 214.0 28.1 260 1575-1869 9-273 (291)
40 4a1s_A PINS, partner of inscut 99.9 8.9E-21 3E-25 224.7 21.5 276 1573-1863 56-375 (411)
41 3ro2_A PINS homolog, G-protein 99.9 6.3E-21 2.2E-25 215.1 19.1 277 1573-1864 13-336 (338)
42 4e6h_A MRNA 3'-END-processing 99.9 7.1E-18 2.4E-22 218.6 49.3 228 1605-1866 343-576 (679)
43 1ouv_A Conserved hypothetical 99.9 3.4E-19 1.2E-23 201.3 32.2 234 1604-1871 5-262 (273)
44 3mkr_A Coatomer subunit epsilo 99.8 8.1E-20 2.8E-24 212.7 24.6 261 1612-1900 6-269 (291)
45 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.4E-20 3.2E-24 202.8 23.7 248 1578-1854 18-269 (275)
46 2ond_A Cleavage stimulation fa 99.8 9E-20 3.1E-24 211.9 24.1 243 682-945 5-272 (308)
47 2ho1_A Type 4 fimbrial biogene 99.8 7.8E-19 2.7E-23 194.1 30.3 214 1600-1835 32-247 (252)
48 2vq2_A PILW, putative fimbrial 99.8 6.7E-19 2.3E-23 189.1 27.7 210 1604-1867 7-218 (225)
49 2ho1_A Type 4 fimbrial biogene 99.8 3.5E-19 1.2E-23 196.8 26.2 215 1634-1870 31-248 (252)
50 2vq2_A PILW, putative fimbrial 99.8 2.2E-18 7.5E-23 185.1 31.4 199 1576-1802 19-221 (225)
51 1xnf_A Lipoprotein NLPI; TPR, 99.8 9.3E-20 3.2E-24 202.8 20.7 243 1616-1885 16-266 (275)
52 3vtx_A MAMA; tetratricopeptide 99.8 4.9E-19 1.7E-23 188.0 24.2 179 1672-1874 4-182 (184)
53 4abn_A Tetratricopeptide repea 99.8 3.9E-19 1.3E-23 220.5 24.3 216 1619-1857 82-318 (474)
54 2uy1_A Cleavage stimulation fa 99.8 7.8E-19 2.7E-23 219.9 25.4 233 684-945 171-415 (493)
55 3vtx_A MAMA; tetratricopeptide 99.8 1.9E-18 6.6E-23 183.4 24.6 172 1638-1831 4-175 (184)
56 3nf1_A KLC 1, kinesin light ch 99.8 1.9E-19 6.5E-24 203.0 17.4 252 1597-1863 20-310 (311)
57 1ouv_A Conserved hypothetical 99.8 1.5E-17 5.1E-22 187.8 30.0 228 1635-1897 2-253 (273)
58 2ond_A Cleavage stimulation fa 99.8 1.6E-17 5.5E-22 193.0 28.7 223 1622-1866 33-276 (308)
59 4i17_A Hypothetical protein; T 99.8 1.9E-17 6.5E-22 182.0 26.1 156 1604-1774 6-164 (228)
60 4abn_A Tetratricopeptide repea 99.8 2.6E-18 9E-23 213.1 20.8 215 1580-1823 83-318 (474)
61 2ooe_A Cleavage stimulation fa 99.8 6.7E-18 2.3E-22 210.4 24.2 243 683-945 228-494 (530)
62 4i17_A Hypothetical protein; T 99.8 2.6E-17 8.8E-22 181.0 25.9 219 1636-1876 4-225 (228)
63 3ulq_A Response regulator aspa 99.8 6.6E-18 2.2E-22 200.7 21.8 240 1607-1863 105-371 (383)
64 2xm6_A Protein corresponding t 99.8 2.8E-16 9.5E-21 194.0 34.4 273 1579-1896 129-433 (490)
65 2xm6_A Protein corresponding t 99.8 3.7E-16 1.3E-20 192.9 34.4 273 1578-1895 92-396 (490)
66 2uy1_A Cleavage stimulation fa 99.8 9.7E-18 3.3E-22 210.0 20.1 246 684-950 46-401 (493)
67 4gyw_A UDP-N-acetylglucosamine 99.8 1.4E-17 4.9E-22 217.4 21.7 173 1670-1864 6-178 (723)
68 3ulq_A Response regulator aspa 99.7 2E-17 6.7E-22 196.6 20.0 244 1641-1898 105-371 (383)
69 4gyw_A UDP-N-acetylglucosamine 99.7 2E-17 6.8E-22 216.1 21.7 172 1635-1828 5-176 (723)
70 3qky_A Outer membrane assembly 99.7 9.5E-17 3.2E-21 180.7 21.3 214 1633-1882 9-249 (261)
71 3nf1_A KLC 1, kinesin light ch 99.7 5.3E-18 1.8E-22 191.2 11.0 250 1635-1896 23-308 (311)
72 3q15_A PSP28, response regulat 99.7 1.2E-16 4.2E-21 190.0 22.2 242 1605-1863 101-368 (378)
73 3qky_A Outer membrane assembly 99.7 1.2E-16 4.2E-21 179.8 19.9 200 1666-1899 8-228 (261)
74 1qqe_A Vesicular transport pro 99.7 9E-17 3.1E-21 185.8 18.5 223 1620-1869 32-278 (292)
75 3edt_B KLC 2, kinesin light ch 99.7 9.6E-17 3.3E-21 177.6 17.0 231 1617-1861 13-282 (283)
76 1hz4_A MALT regulatory protein 99.7 1.3E-15 4.5E-20 179.4 27.0 282 1604-1897 13-324 (373)
77 3as5_A MAMA; tetratricopeptide 99.7 2.7E-15 9.1E-20 155.5 23.8 175 1673-1869 8-182 (186)
78 3dra_A Protein farnesyltransfe 99.7 3.3E-15 1.1E-19 176.9 26.4 242 1610-1873 37-301 (306)
79 2pzi_A Probable serine/threoni 99.7 5.6E-16 1.9E-20 200.8 20.7 193 1606-1824 395-596 (681)
80 1hz4_A MALT regulatory protein 99.7 4.2E-15 1.4E-19 175.1 26.0 274 1574-1863 23-325 (373)
81 2pzi_A Probable serine/threoni 99.7 2.8E-16 9.5E-21 203.7 17.3 200 1633-1858 388-596 (681)
82 3q15_A PSP28, response regulat 99.7 1.7E-15 5.8E-20 180.3 22.5 241 1641-1895 103-365 (378)
83 1qqe_A Vesicular transport pro 99.7 1.2E-15 4.1E-20 176.4 20.1 218 1611-1841 43-284 (292)
84 3as5_A MAMA; tetratricopeptide 99.7 4.4E-15 1.5E-19 153.9 21.5 170 1604-1795 7-176 (186)
85 3e4b_A ALGK; tetratricopeptide 99.7 9.8E-16 3.3E-20 189.0 19.0 288 1578-1894 16-350 (452)
86 4ga2_A E3 SUMO-protein ligase 99.7 1E-16 3.4E-21 168.3 8.5 147 1731-1880 2-149 (150)
87 3edt_B KLC 2, kinesin light ch 99.6 4.8E-15 1.7E-19 164.0 18.8 213 1604-1827 42-282 (283)
88 2yhc_A BAMD, UPF0169 lipoprote 99.6 1.3E-14 4.5E-19 161.0 21.0 209 1604-1867 3-220 (225)
89 3urz_A Uncharacterized protein 99.6 7.7E-15 2.6E-19 161.5 18.3 99 1604-1702 3-117 (208)
90 2yhc_A BAMD, UPF0169 lipoprote 99.6 3.7E-14 1.3E-18 157.4 22.3 211 1638-1901 3-219 (225)
91 3e4b_A ALGK; tetratricopeptide 99.6 2.8E-14 9.7E-19 176.0 22.9 272 1579-1895 88-387 (452)
92 4ga2_A E3 SUMO-protein ligase 99.6 6.1E-15 2.1E-19 154.7 14.1 147 1678-1846 2-149 (150)
93 3dra_A Protein farnesyltransfe 99.6 6.9E-14 2.4E-18 165.6 24.5 231 1582-1840 50-302 (306)
94 3urz_A Uncharacterized protein 99.6 1.6E-14 5.6E-19 158.8 17.9 185 1672-1864 3-190 (208)
95 2ifu_A Gamma-SNAP; membrane fu 99.6 1.1E-14 3.9E-19 169.5 14.7 210 1618-1866 4-229 (307)
96 4gco_A Protein STI-1; structur 99.6 1.7E-14 5.9E-19 147.6 12.9 119 1753-1874 6-124 (126)
97 3dss_A Geranylgeranyl transfer 99.5 7.5E-13 2.6E-17 158.3 28.5 236 1614-1871 38-315 (331)
98 2ifu_A Gamma-SNAP; membrane fu 99.5 1.1E-13 3.9E-18 161.0 18.1 228 1579-1852 5-253 (307)
99 1xi4_A Clathrin heavy chain; a 99.5 5.5E-13 1.9E-17 178.9 26.5 223 1604-1877 1104-1326(1630)
100 2vsy_A XCC0866; transferase, g 99.5 1.8E-13 6.3E-18 172.1 20.5 165 1686-1872 2-169 (568)
101 3qou_A Protein YBBN; thioredox 99.5 3.1E-13 1.1E-17 156.4 20.4 168 1636-1825 114-283 (287)
102 4gco_A Protein STI-1; structur 99.5 3.5E-13 1.2E-17 137.9 17.3 116 1723-1841 10-125 (126)
103 3qou_A Protein YBBN; thioredox 99.5 3.6E-13 1.2E-17 155.9 18.9 170 1669-1860 113-284 (287)
104 2vsy_A XCC0866; transferase, g 99.5 3.2E-13 1.1E-17 169.9 19.9 163 1619-1803 3-168 (568)
105 2r5s_A Uncharacterized protein 99.5 1.8E-13 6.2E-18 145.9 13.8 63 1640-1702 7-69 (176)
106 2r5s_A Uncharacterized protein 99.5 1.7E-13 5.7E-18 146.2 13.2 164 1606-1825 7-172 (176)
107 2fo7_A Synthetic consensus TPR 99.5 1.8E-12 6.1E-17 126.7 19.2 134 1727-1863 2-135 (136)
108 3q7a_A Farnesyltransferase alp 99.5 4.5E-12 1.5E-16 152.5 26.0 230 1615-1866 64-338 (349)
109 3gyz_A Chaperone protein IPGC; 99.5 5.8E-14 2E-18 149.5 8.5 118 1745-1865 21-138 (151)
110 3rjv_A Putative SEL1 repeat pr 99.5 2.9E-12 9.9E-17 141.7 21.5 174 1623-1826 4-197 (212)
111 3rjv_A Putative SEL1 repeat pr 99.4 1.7E-12 6E-17 143.5 18.8 184 1656-1871 3-206 (212)
112 3dss_A Geranylgeranyl transfer 99.4 1.3E-11 4.6E-16 147.5 27.6 232 1582-1841 47-319 (331)
113 1xi4_A Clathrin heavy chain; a 99.4 3.9E-12 1.3E-16 170.9 24.6 255 1574-1885 1114-1375(1630)
114 1p5q_A FKBP52, FK506-binding p 99.4 4.7E-14 1.6E-18 167.4 4.8 138 1723-1861 144-295 (336)
115 2vgx_A Chaperone SYCD; alterna 99.4 3.4E-13 1.2E-17 141.5 10.7 120 1746-1868 7-126 (148)
116 4f3v_A ESX-1 secretion system 99.4 8.4E-13 2.9E-17 154.5 14.8 222 1642-1873 10-249 (282)
117 4f3v_A ESX-1 secretion system 99.4 4.3E-13 1.5E-17 156.9 11.5 210 1605-1837 7-247 (282)
118 2xcb_A PCRH, regulatory protei 99.4 8.6E-13 2.9E-17 136.1 10.9 122 1747-1871 5-126 (142)
119 1b89_A Protein (clathrin heavy 99.4 6.6E-13 2.3E-17 163.4 11.7 258 1573-1887 40-304 (449)
120 2c2l_A CHIP, carboxy terminus 99.4 9.4E-13 3.2E-17 152.2 12.3 99 1604-1702 3-101 (281)
121 2c2l_A CHIP, carboxy terminus 99.4 1.2E-12 4.1E-17 151.3 13.0 199 1636-1863 1-202 (281)
122 1hh8_A P67PHOX, NCF-2, neutrop 99.4 6.8E-12 2.3E-16 135.5 17.7 134 1726-1865 6-155 (213)
123 1p5q_A FKBP52, FK506-binding p 99.4 2.9E-13 9.9E-18 160.7 7.3 155 1739-1896 126-295 (336)
124 3gyz_A Chaperone protein IPGC; 99.4 1.8E-12 6.1E-17 138.0 12.6 112 1590-1709 25-136 (151)
125 1b89_A Protein (clathrin heavy 99.4 6.2E-13 2.1E-17 163.7 9.9 222 1605-1877 32-253 (449)
126 1a17_A Serine/threonine protei 99.4 1.8E-11 6.1E-16 125.9 19.1 137 1724-1863 11-149 (166)
127 2e2e_A Formate-dependent nitri 99.4 3.2E-12 1.1E-16 135.1 13.0 130 1736-1868 20-152 (177)
128 2qfc_A PLCR protein; TPR, HTH, 99.3 3E-11 1E-15 139.2 21.2 177 1674-1863 76-269 (293)
129 2fo7_A Synthetic consensus TPR 99.3 4.8E-11 1.6E-15 116.5 19.5 133 1607-1758 3-135 (136)
130 3upv_A Heat shock protein STI1 99.3 6.8E-12 2.3E-16 125.5 13.4 109 1763-1871 4-118 (126)
131 3q7a_A Farnesyltransferase alp 99.3 6.2E-11 2.1E-15 142.6 23.3 232 1581-1840 70-346 (349)
132 3upv_A Heat shock protein STI1 99.3 3E-11 1E-15 120.9 17.2 118 1724-1844 2-125 (126)
133 3sz7_A HSC70 cochaperone (SGT) 99.3 1.1E-11 3.9E-16 130.0 14.7 112 1763-1874 11-122 (164)
134 2qfc_A PLCR protein; TPR, HTH, 99.3 5.8E-11 2E-15 136.7 21.8 178 1636-1826 72-266 (293)
135 2vyi_A SGTA protein; chaperone 99.3 5.7E-11 1.9E-15 116.1 17.4 122 1723-1847 9-130 (131)
136 2lni_A Stress-induced-phosphop 99.3 1.3E-11 4.3E-16 122.1 12.9 114 1763-1876 16-129 (133)
137 2fbn_A 70 kDa peptidylprolyl i 99.3 2E-12 6.7E-17 140.0 7.3 144 1735-1881 13-172 (198)
138 2vyi_A SGTA protein; chaperone 99.3 3.5E-11 1.2E-15 117.6 15.4 119 1763-1881 12-130 (131)
139 1dce_A Protein (RAB geranylger 99.3 6.1E-12 2.1E-16 160.4 12.6 188 1655-1864 45-271 (567)
140 2fbn_A 70 kDa peptidylprolyl i 99.3 7.8E-12 2.7E-16 135.3 11.3 135 1723-1857 35-183 (198)
141 1hh8_A P67PHOX, NCF-2, neutrop 99.3 8.4E-11 2.9E-15 127.0 19.4 150 1674-1860 7-172 (213)
142 1kt0_A FKBP51, 51 kDa FK506-bi 99.3 1.5E-12 5.1E-17 161.1 6.4 153 1741-1896 249-416 (457)
143 3u3w_A Transcriptional activat 99.3 9.5E-11 3.2E-15 135.0 20.7 176 1605-1792 75-266 (293)
144 1dce_A Protein (RAB geranylger 99.3 7.4E-12 2.5E-16 159.6 12.5 192 1616-1829 39-270 (567)
145 3mv2_B Coatomer subunit epsilo 99.3 8.3E-11 2.8E-15 139.4 20.5 248 1575-1868 23-290 (310)
146 3u3w_A Transcriptional activat 99.3 8.7E-11 3E-15 135.3 20.3 174 1677-1863 79-269 (293)
147 2lni_A Stress-induced-phosphop 99.3 4E-11 1.4E-15 118.4 14.9 121 1723-1846 13-133 (133)
148 2vgx_A Chaperone SYCD; alterna 99.3 1.6E-11 5.5E-16 128.8 12.4 109 1723-1834 18-126 (148)
149 3sz7_A HSC70 cochaperone (SGT) 99.2 7.4E-11 2.5E-15 123.8 15.7 116 1723-1841 8-123 (164)
150 3q49_B STIP1 homology and U bo 99.2 6.1E-11 2.1E-15 119.1 14.1 101 1763-1863 9-109 (137)
151 1a17_A Serine/threonine protei 99.2 2.3E-10 7.7E-15 117.6 18.3 135 1604-1755 12-146 (166)
152 1na0_A Designed protein CTPR3; 99.2 1.2E-10 4.3E-15 112.7 15.5 112 1764-1875 10-121 (125)
153 2xcb_A PCRH, regulatory protei 99.2 7.4E-11 2.5E-15 121.6 14.3 116 1723-1841 15-130 (142)
154 1elw_A TPR1-domain of HOP; HOP 99.2 1E-10 3.4E-15 112.5 14.2 111 1763-1873 4-114 (118)
155 4gcn_A Protein STI-1; structur 99.2 6.6E-11 2.3E-15 120.8 13.6 101 1763-1863 8-115 (127)
156 1hxi_A PEX5, peroxisome target 99.2 6.5E-11 2.2E-15 120.0 12.7 102 1765-1866 19-120 (121)
157 1na0_A Designed protein CTPR3; 99.2 4.6E-10 1.6E-14 108.7 18.1 117 1726-1845 9-125 (125)
158 3rkv_A Putative peptidylprolyl 99.2 3.8E-11 1.3E-15 125.8 10.7 101 1765-1865 13-131 (162)
159 4b4t_Q 26S proteasome regulato 99.2 5.2E-11 1.8E-15 142.4 13.2 224 1607-1860 6-245 (434)
160 2hr2_A Hypothetical protein; a 99.2 6.6E-11 2.3E-15 127.7 12.5 109 1765-1873 13-144 (159)
161 1elw_A TPR1-domain of HOP; HOP 99.2 4.4E-10 1.5E-14 108.0 16.8 114 1725-1841 3-116 (118)
162 4gcn_A Protein STI-1; structur 99.2 2.5E-10 8.5E-15 116.5 15.6 104 1723-1829 5-115 (127)
163 2dba_A Smooth muscle cell asso 99.2 1.8E-10 6.2E-15 116.1 14.1 112 1763-1874 28-142 (148)
164 1wao_1 Serine/threonine protei 99.2 1E-11 3.4E-16 154.9 5.7 144 1726-1872 6-162 (477)
165 3rkv_A Putative peptidylprolyl 99.2 1.3E-10 4.5E-15 121.7 13.2 121 1724-1847 9-148 (162)
166 3gw4_A Uncharacterized protein 99.2 2.5E-10 8.6E-15 121.5 15.2 166 1615-1792 2-176 (203)
167 1hxi_A PEX5, peroxisome target 99.2 9.5E-11 3.2E-15 118.8 11.3 110 1596-1709 8-117 (121)
168 2e2e_A Formate-dependent nitri 99.2 1.2E-10 4.2E-15 123.0 12.5 125 1616-1759 21-148 (177)
169 3q49_B STIP1 homology and U bo 99.2 2.7E-10 9.2E-15 114.4 13.9 119 1724-1845 7-130 (137)
170 2kck_A TPR repeat; tetratricop 99.1 1.7E-10 5.7E-15 110.3 11.3 107 1756-1865 2-111 (112)
171 3gw4_A Uncharacterized protein 99.1 4.6E-10 1.6E-14 119.5 15.8 165 1649-1826 2-176 (203)
172 2if4_A ATFKBP42; FKBP-like, al 99.1 7.7E-11 2.6E-15 140.2 9.4 139 1724-1865 177-333 (338)
173 2xev_A YBGF; tetratricopeptide 99.1 3.8E-10 1.3E-14 112.1 13.0 105 1765-1869 4-114 (129)
174 4h7y_A Dual specificity protei 99.1 1.8E-10 6.2E-15 121.9 11.1 118 761-886 8-133 (161)
175 1kt0_A FKBP51, 51 kDa FK506-bi 99.1 4.5E-10 1.5E-14 139.0 16.0 134 1723-1857 265-412 (457)
176 3ro3_A PINS homolog, G-protein 99.1 5.5E-10 1.9E-14 112.5 13.5 140 1724-1863 7-161 (164)
177 1elr_A TPR2A-domain of HOP; HO 99.1 4.3E-10 1.5E-14 110.1 12.2 110 1763-1873 4-120 (131)
178 1elr_A TPR2A-domain of HOP; HO 99.1 8.5E-10 2.9E-14 108.0 13.7 118 1724-1845 2-126 (131)
179 2xev_A YBGF; tetratricopeptide 99.1 1.7E-09 5.8E-14 107.4 16.0 118 1728-1845 4-124 (129)
180 2hr2_A Hypothetical protein; a 99.1 3.3E-10 1.1E-14 122.4 10.5 116 1724-1839 9-144 (159)
181 4h7y_A Dual specificity protei 99.1 6.7E-10 2.3E-14 117.7 12.2 98 810-908 10-121 (161)
182 2dba_A Smooth muscle cell asso 99.0 1.2E-09 4.2E-14 109.9 13.0 121 1723-1843 25-145 (148)
183 1ihg_A Cyclophilin 40; ppiase 99.0 1.3E-09 4.5E-14 131.7 15.2 124 1725-1851 222-361 (370)
184 1ihg_A Cyclophilin 40; ppiase 99.0 4.2E-10 1.4E-14 136.0 10.8 123 1763-1885 223-361 (370)
185 2if4_A ATFKBP42; FKBP-like, al 99.0 3E-10 1E-14 135.0 9.0 136 1763-1898 179-331 (338)
186 3ro3_A PINS homolog, G-protein 99.0 1.7E-09 5.9E-14 108.8 13.0 143 1603-1758 7-161 (164)
187 3mv2_B Coatomer subunit epsilo 99.0 1.2E-08 4E-13 121.0 21.5 191 1624-1835 85-291 (310)
188 2kck_A TPR repeat; tetratricop 99.0 2E-09 6.8E-14 102.7 11.8 99 1604-1702 5-106 (112)
189 4b4t_Q 26S proteasome regulato 99.0 2.5E-09 8.5E-14 127.9 14.9 216 1674-1894 5-244 (434)
190 1wao_1 Serine/threonine protei 99.0 2.3E-10 7.9E-15 142.7 6.2 126 1764-1890 7-134 (477)
191 3k9i_A BH0479 protein; putativ 99.0 3.6E-10 1.2E-14 112.6 6.3 94 1775-1868 2-98 (117)
192 3k9i_A BH0479 protein; putativ 98.9 1.2E-09 4.1E-14 108.8 7.1 95 1738-1835 2-99 (117)
193 1zu2_A Mitochondrial import re 98.9 1.7E-09 6E-14 116.6 7.8 93 1777-1869 16-129 (158)
194 1zu2_A Mitochondrial import re 98.8 7.8E-09 2.7E-13 111.5 9.4 92 1737-1831 13-125 (158)
195 2l6j_A TPR repeat-containing p 98.8 6.6E-09 2.3E-13 100.2 6.2 93 1763-1855 4-102 (111)
196 2l6j_A TPR repeat-containing p 98.7 1.1E-08 3.8E-13 98.6 5.8 95 1604-1698 3-103 (111)
197 2kat_A Uncharacterized protein 98.7 5.9E-08 2E-12 95.7 11.0 84 1781-1864 3-86 (115)
198 1na3_A Designed protein CTPR2; 98.7 1.9E-07 6.6E-12 86.8 12.9 84 1604-1687 8-91 (91)
199 1na3_A Designed protein CTPR2; 98.7 1.9E-07 6.6E-12 86.8 12.8 83 1763-1845 9-91 (91)
200 2kat_A Uncharacterized protein 98.7 1.3E-07 4.3E-12 93.3 11.9 97 1744-1843 3-101 (115)
201 2kc7_A BFR218_protein; tetratr 98.6 8E-08 2.7E-12 91.8 7.6 92 1767-1866 4-96 (99)
202 3n71_A Histone lysine methyltr 98.6 2.5E-07 8.7E-12 116.2 13.8 139 1607-1756 311-465 (490)
203 3n71_A Histone lysine methyltr 98.5 3.6E-07 1.2E-11 114.8 14.3 137 1644-1791 314-463 (490)
204 1klx_A Cysteine rich protein B 98.5 9.9E-07 3.4E-11 91.6 14.6 121 1740-1873 9-137 (138)
205 3ma5_A Tetratricopeptide repea 98.5 2.9E-07 9.9E-12 89.8 8.0 71 1793-1863 3-73 (100)
206 3ma5_A Tetratricopeptide repea 98.4 8.1E-07 2.8E-11 86.6 9.6 71 1756-1829 3-73 (100)
207 2kc7_A BFR218_protein; tetratr 98.4 5.1E-07 1.7E-11 86.2 7.1 87 1608-1702 3-90 (99)
208 1klx_A Cysteine rich protein B 98.2 1.1E-05 3.8E-10 83.7 14.7 120 1687-1838 9-136 (138)
209 3u64_A Protein TP_0956; tetrat 98.2 1.9E-05 6.5E-10 92.6 15.9 107 1755-1864 147-273 (301)
210 3ly7_A Transcriptional activat 98.2 1.3E-05 4.5E-10 97.0 14.7 123 1740-1866 213-345 (372)
211 3ly7_A Transcriptional activat 98.0 7.4E-05 2.5E-09 90.5 16.5 47 1604-1650 195-244 (372)
212 3u64_A Protein TP_0956; tetrat 97.9 0.00034 1.2E-08 82.2 19.9 88 1741-1829 178-272 (301)
213 3qwp_A SET and MYND domain-con 97.9 3.6E-05 1.2E-09 95.2 12.0 121 1607-1738 289-425 (429)
214 3bee_A Putative YFRE protein; 97.9 4.8E-05 1.6E-09 74.7 10.4 73 1793-1865 2-77 (93)
215 3qwp_A SET and MYND domain-con 97.9 5.3E-05 1.8E-09 93.7 12.7 117 1647-1774 295-424 (429)
216 3qww_A SET and MYND domain-con 97.9 4E-05 1.4E-09 95.0 11.5 87 1616-1702 309-411 (433)
217 1pc2_A Mitochondria fission pr 97.8 4.8E-05 1.6E-09 81.6 9.6 93 1779-1871 14-111 (152)
218 3qww_A SET and MYND domain-con 97.8 6.9E-05 2.4E-09 92.9 11.7 94 1651-1755 310-411 (433)
219 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00017 5.8E-09 71.3 11.7 77 1604-1680 4-87 (104)
220 4g26_A Pentatricopeptide repea 97.7 0.0019 6.5E-08 81.4 23.8 165 1642-1826 29-204 (501)
221 4g26_A Pentatricopeptide repea 97.7 0.0013 4.6E-08 82.7 22.1 166 1675-1860 28-204 (501)
222 2v5f_A Prolyl 4-hydroxylase su 97.7 0.00024 8.3E-09 70.2 11.9 76 1763-1838 5-87 (104)
223 3bee_A Putative YFRE protein; 97.6 0.00026 8.8E-09 69.5 10.9 68 1604-1671 5-75 (93)
224 1pc2_A Mitochondria fission pr 97.5 0.0005 1.7E-08 73.8 12.1 94 1741-1837 13-111 (152)
225 4a1g_A Mitotic checkpoint seri 97.4 0.00078 2.7E-08 72.2 12.4 122 795-923 6-147 (152)
226 3esl_A Checkpoint serine/threo 97.4 0.0015 5E-08 73.0 14.3 128 794-922 7-160 (202)
227 4aez_C MAD3, mitotic spindle c 97.2 0.0011 3.7E-08 75.1 11.2 125 791-921 47-194 (223)
228 2wvi_A Mitotic checkpoint seri 97.0 0.0016 5.3E-08 70.8 9.4 120 799-924 3-143 (164)
229 3esl_A Checkpoint serine/threo 97.0 0.011 3.7E-07 66.1 15.9 139 746-893 6-162 (202)
230 1nzn_A CGI-135 protein, fissio 96.8 0.004 1.4E-07 64.9 9.5 93 1779-1871 17-114 (126)
231 4aez_C MAD3, mitotic spindle c 96.7 0.014 4.7E-07 66.2 13.7 133 747-893 50-197 (223)
232 4a1g_A Mitotic checkpoint seri 96.6 0.016 5.5E-07 62.2 12.7 129 749-894 7-149 (152)
233 1nzn_A CGI-135 protein, fissio 96.0 0.041 1.4E-06 57.4 11.7 99 1739-1840 14-117 (126)
234 2wvi_A Mitotic checkpoint seri 95.8 0.051 1.7E-06 59.1 11.9 127 753-894 4-144 (164)
235 3ffl_A Anaphase-promoting comp 95.7 0.029 9.8E-07 61.0 9.1 93 1607-1699 22-148 (167)
236 3mkq_A Coatomer beta'-subunit; 95.1 1.4 4.8E-05 56.9 24.1 77 1608-1700 632-708 (814)
237 3ffl_A Anaphase-promoting comp 95.1 0.052 1.8E-06 59.0 8.9 63 1640-1702 21-92 (167)
238 3o48_A Mitochondria fission 1 94.9 0.11 3.9E-06 54.5 10.3 78 1604-1681 39-120 (134)
239 3mkq_A Coatomer beta'-subunit; 94.4 0.58 2E-05 60.5 17.8 100 1613-1752 607-707 (814)
240 1y8m_A FIS1; mitochondria, unk 94.4 0.27 9.2E-06 52.3 11.8 77 1604-1680 38-118 (144)
241 1y8m_A FIS1; mitochondria, unk 93.9 0.37 1.3E-05 51.2 11.7 78 1794-1871 36-117 (144)
242 3txn_A 26S proteasome regulato 93.8 1.2 4E-05 54.8 17.8 173 1675-1861 21-211 (394)
243 3o48_A Mitochondria fission 1 93.4 0.23 7.9E-06 52.2 9.0 77 1796-1872 39-119 (134)
244 1qsa_A Protein (soluble lytic 93.4 4.9 0.00017 52.1 23.3 127 1732-1859 220-347 (618)
245 4gns_B Protein CSD3, chitin bi 93.3 0.26 9E-06 65.0 11.5 116 1738-1857 260-397 (754)
246 3txn_A 26S proteasome regulato 93.2 0.61 2.1E-05 57.2 13.9 194 1606-1812 20-235 (394)
247 3kae_A CDC27, possible protein 92.6 14 0.00049 40.4 23.7 221 1616-1863 13-240 (242)
248 3kae_A CDC27, possible protein 91.4 9.8 0.00034 41.6 18.4 91 1607-1702 35-143 (242)
249 4gns_B Protein CSD3, chitin bi 90.5 1.2 4E-05 59.0 12.7 59 1765-1823 339-397 (754)
250 4b4t_P 26S proteasome regulato 90.4 11 0.00039 46.7 21.0 174 1604-1792 55-247 (445)
251 2ff4_A Probable regulatory pro 90.4 2.4 8.1E-05 51.7 14.6 96 1607-1702 117-234 (388)
252 2ff4_A Probable regulatory pro 89.9 2.3 7.9E-05 51.7 13.9 112 1732-1859 121-233 (388)
253 4b4t_P 26S proteasome regulato 89.6 15 0.0005 45.7 21.0 198 1619-1826 30-247 (445)
254 1ya0_A SMG-7 transcript varian 87.5 1.8 6.3E-05 54.6 11.0 81 1726-1809 152-232 (497)
255 1zbp_A Hypothetical protein VP 86.5 8 0.00027 45.2 14.6 123 1734-1866 5-135 (273)
256 1ya0_A SMG-7 transcript varian 84.3 3.6 0.00012 51.9 11.4 81 1763-1843 152-232 (497)
257 1qsa_A Protein (soluble lytic 83.8 81 0.0028 40.9 23.7 257 1627-1892 57-345 (618)
258 4fhn_B Nucleoporin NUP120; pro 83.7 26 0.0009 48.4 20.5 148 1610-1779 817-987 (1139)
259 3mkq_B Coatomer subunit alpha; 83.6 14 0.00049 40.5 14.3 42 1618-1664 18-59 (177)
260 3spa_A Mtrpol, DNA-directed RN 83.4 7.2 0.00025 53.1 14.0 100 1724-1827 125-231 (1134)
261 3spa_A Mtrpol, DNA-directed RN 82.6 19 0.00064 49.3 17.3 108 1606-1715 128-241 (1134)
262 3mkq_B Coatomer subunit alpha; 82.1 15 0.00052 40.3 13.8 103 1734-1857 13-115 (177)
263 1zbp_A Hypothetical protein VP 81.2 7.1 0.00024 45.6 11.3 129 1613-1759 5-133 (273)
264 4b4t_S RPN3, 26S proteasome re 79.6 4.6 0.00016 51.2 9.7 71 1724-1796 229-303 (523)
265 4b4t_R RPN7, 26S proteasome re 77.1 6.9 0.00024 48.2 10.3 100 1728-1827 133-238 (429)
266 4b4t_R RPN7, 26S proteasome re 75.8 3.9 0.00013 50.4 7.5 102 1675-1792 133-237 (429)
267 4fhn_B Nucleoporin NUP120; pro 75.1 29 0.001 48.0 16.6 56 1642-1701 815-870 (1139)
268 4b4t_S RPN3, 26S proteasome re 70.2 5.4 0.00018 50.6 6.8 130 1735-1866 145-305 (523)
269 3lpz_A GET4 (YOR164C homolog); 69.0 2E+02 0.0069 34.6 26.8 25 1725-1749 135-159 (336)
270 2wpv_A GET4, UPF0363 protein Y 65.5 2.2E+02 0.0076 33.8 20.8 26 1725-1750 133-158 (312)
271 4ady_A RPN2, 26S proteasome re 62.5 27 0.00091 47.4 11.5 10 1138-1147 39-48 (963)
272 4ady_A RPN2, 26S proteasome re 58.3 74 0.0025 43.2 14.5 215 1607-1845 457-679 (963)
273 2wpv_A GET4, UPF0363 protein Y 57.6 1.9E+02 0.0064 34.4 16.5 66 1795-1860 132-217 (312)
274 3lvg_A Clathrin heavy chain 1; 55.0 0.00073 2.5E-08 83.5 -30.5 231 1590-1875 41-273 (624)
275 3lpz_A GET4 (YOR164C homolog); 40.4 5.6E+02 0.019 30.8 23.5 80 1761-1859 134-215 (336)
276 4gq2_M Nucleoporin NUP120; bet 32.8 1.5E+02 0.0051 40.3 11.6 88 1611-1702 816-926 (950)
277 4gq2_M Nucleoporin NUP120; bet 31.0 2.4E+02 0.0081 38.4 13.1 52 1732-1790 816-867 (950)
278 3uzd_A 14-3-3 protein gamma; s 23.7 7.8E+02 0.027 28.4 13.7 58 1605-1662 4-63 (248)
No 1
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.97 E-value=3.1e-29 Score=291.55 Aligned_cols=329 Identities=43% Similarity=0.720 Sum_probs=262.2
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHh-chhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHH
Q psy8682 1549 EPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQR-SSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILY 1627 (1956)
Q Consensus 1549 d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs-~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~ 1627 (1956)
+...|..+...|+.+.+.+. ..+.|+++|++|+. . |++++.+.+.+|..+...++.+|..+...|++++|+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~a~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 13 DVDFWDKLQAELEEMAKRDA----EAHPWLSDYDDLTSAT--YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp -------------------------------------CHH--HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHcCCc----hhhHHHHHHHHHHhhh--hhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 66789999999999987763 48999999999999 7 89999999998876677899999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Q psy8682 1628 LEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESN 1707 (1956)
Q Consensus 1628 fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~d 1707 (1956)
|+++++.+|.++.++..+|.++...|++++|+..|+++++++|++..++..+|.+|...|++++|+..+++++.. .
T Consensus 87 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~ 162 (368)
T 1fch_A 87 FEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY----T 162 (368)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----S
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred CCchhhhhhcCcc----hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1708 PRPSAYKADALPS----KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783 (1956)
Q Consensus 1708 Pd~eay~~Ll~~~----Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAi 1783 (1956)
|. ........ ...........++.++ ..|++++|+..|+++++..|.. ..+.++..+|.++...|++++|+
T Consensus 163 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~ 237 (368)
T 1fch_A 163 PA---YAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTS-IDPDVQCGLGVLFNLSGEYDKAV 237 (368)
T ss_dssp TT---TGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTS-CCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cC---cHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCc-ccHHHHHHHHHHHHHcCCHHHHH
Confidence 77 22222000 0001111222456666 8999999999999999999992 12899999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1784 e~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+|++++.+.|+++.++..+|.++...|++++|+..|++++++.|++..++..+|.++..+|++++|+.+|++++.+.|+
T Consensus 238 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 238 DCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-----------hhchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1864 T-----------HDGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1864 n-----------~dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+ ..+|..+|.++..+|++.++. ..+++++
T Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l 357 (368)
T 1fch_A 318 SRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG-AADARDL 357 (368)
T ss_dssp C------CCCCCHHHHHHHHHHHHHHTCGGGHH-HHHTTCH
T ss_pred CCCccccccchhhHHHHHHHHHHHHhCChHhHH-HhHHHHH
Confidence 8 789999999999999987766 4444443
No 2
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=3.3e-28 Score=287.69 Aligned_cols=334 Identities=16% Similarity=0.154 Sum_probs=273.1
Q ss_pred CcchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHH
Q psy8682 1505 VPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRN 1584 (1956)
Q Consensus 1505 v~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeA 1584 (1956)
....+...++|++|++.+....... |. +...+. .++ ..+...+++++|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~---------------~~~~~~-------~l~--------~~~~~~~~~~~a 52 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PD---------------NTGVLL-------LLS--------SIHFQCRRLDRS 52 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TT---------------CHHHHH-------HHH--------HHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CC---------------CHHHHH-------HHH--------HHHHHcCCHHHH
Confidence 3466778899999999976543221 11 111222 122 233445677888
Q ss_pred HhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1585 QRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1585 Ls~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
+.. +++++...|. ++.+++.+|.++...|++++|+..|++++..+|++..++..+|.++...|++++|+..|++
T Consensus 53 ~~~--~~~a~~~~p~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 53 AHF--STLAIKQNPL----LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHH--HHHHHHHCTT----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred HHH--HHHHHhcCCC----chHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877 7777766544 4558999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHH
Q psy8682 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQ 1744 (1956)
Q Consensus 1665 ALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeE 1744 (1956)
+++.+|+...++..+|.++...|++++|+..|+++++. +|+ ...++..+|.++...|++++
T Consensus 127 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~l~~~~~~~g~~~~ 187 (388)
T 1w3b_A 127 ALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPN---------------FAVAWSNLGCVFNAQGEIWL 187 (388)
T ss_dssp HHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCHHH
T ss_pred HHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999988 665 34567778888888888888
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
|+..|+++++.+|++ ..++..+|.++...|++++|+..|++++.+.|+++.++..+|.++...|++++|+..|++++
T Consensus 188 A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 264 (388)
T 1w3b_A 188 AIHHFEKAVTLDPNF---LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAI 264 (388)
T ss_dssp HHHHHHHHHHHCTTC---HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888888888888887 88888888888888888888888888888888888888888888888888888888888888
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1825 eL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++.+++ ..+++++...+..
T Consensus 265 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~al~~~p~~ 338 (388)
T 1w3b_A 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RLYRKALEVFPEF 338 (388)
T ss_dssp HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHTTSCTTC
T ss_pred hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCc
Confidence 8888888888888888888888888888888888888888888888888888888887777 7777777765553
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=3.7e-28 Score=287.35 Aligned_cols=331 Identities=17% Similarity=0.191 Sum_probs=298.4
Q ss_pred chhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHh
Q psy8682 1507 NTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQR 1586 (1956)
Q Consensus 1507 n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs 1586 (1956)
.++...+++++|+..+....... +. .... |..++ ..+...+++++|+.
T Consensus 41 ~~~~~~~~~~~a~~~~~~a~~~~--p~---------------~~~~-------~~~lg--------~~~~~~g~~~~A~~ 88 (388)
T 1w3b_A 41 SIHFQCRRLDRSAHFSTLAIKQN--PL---------------LAEA-------YSNLG--------NVYKERGQLQEAIE 88 (388)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--TT---------------CHHH-------HHHHH--------HHHHHHTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CC---------------chHH-------HHHHH--------HHHHHCCCHHHHHH
Confidence 45677889999999876543221 11 1112 33333 34556678999999
Q ss_pred chhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy8682 1587 SSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666 (1956)
Q Consensus 1587 ~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKAL 1666 (1956)
. |++++.+.|++ ..+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+..|++++
T Consensus 89 ~--~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 162 (388)
T 1w3b_A 89 H--YRHALRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp H--HHHHHHHCTTC----HHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred H--HHHHHHcCcch----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8 99999886654 45899999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1667 eLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
+.+|++..++..+|.++...|++++|+..|+++++. +|+ ...++..+|.++...|++++|+
T Consensus 163 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~lg~~~~~~~~~~~A~ 223 (388)
T 1w3b_A 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL----DPN---------------FLDAYINLGNVLKEARIFDRAV 223 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCTTHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCC---------------cHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999999999999 666 4456788999999999999999
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|++++..+|++ ..++..+|.++...|++++|+..|+++++..|+++.++..+|.++...|++++|+..|+++++.
T Consensus 224 ~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 300 (388)
T 1w3b_A 224 AAYLRALSLSPNH---AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300 (388)
T ss_dssp HHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.|.+..++..+|.++...|++++|+.+|+++++++|++..++..+|.++...|++.+++ ..++.++...+.
T Consensus 301 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~p~ 371 (388)
T 1w3b_A 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEAL-MHYKEAIRISPT 371 (388)
T ss_dssp CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHH-HHHHHHHTTCTT
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCC
Confidence 99999999999999999999999999999999999999999999999999999998888 778877776554
No 4
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.96 E-value=1.1e-28 Score=288.97 Aligned_cols=315 Identities=43% Similarity=0.752 Sum_probs=241.7
Q ss_pred chHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHHhc---hhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHH
Q psy8682 1549 EPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRS---SVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAI 1625 (1956)
Q Consensus 1549 d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeALs~---s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAI 1625 (1956)
...+|++++..|+.+...+ |+.+|+..... ..+.+++.+.+.+|..++..++.+|..+...|++++|+
T Consensus 15 ~~~~~~~l~~~~~~~~~~~---------wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 85 (365)
T 4eqf_A 15 DTEFWDKMQAEWEEMARRN---------WISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTI 85 (365)
T ss_dssp -----------------------------------------------CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---------HHHHhhhhhhhhhhHHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHH
Confidence 5678999999999988433 99988876511 12566777788888767788999999999999999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Q psy8682 1626 LYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQE 1705 (1956)
Q Consensus 1626 e~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e 1705 (1956)
.+|+++++.+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.+|...|++++|+.+++++++.
T Consensus 86 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--- 162 (365)
T 4eqf_A 86 LFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQ--- 162 (365)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1706 SNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1706 ~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
.|+ ....... .......+..+|.++...|++++|+.+|+++++..|.. ..+.++..+|.++...|++++|+.+
T Consensus 163 -~p~---~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 235 (365)
T 4eqf_A 163 -NPK---YKYLVKN--KKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDA 235 (365)
T ss_dssp -CHH---HHCC---------------------CCHHHHHHHHHHHHHHHHSCSS-CCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred -Ccc---chHHHhh--hccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCc-cCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 666 2222200 01223455678999999999999999999999999992 2289999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT- 1864 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn- 1864 (1956)
|+++++..|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.+|..+|++++|+.+|++++++.|++
T Consensus 236 ~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 315 (365)
T 4eqf_A 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSR 315 (365)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred -----------hhchhccccchhhhcccH
Q psy8682 1865 -----------HDGLTPHGLEPRAVKEMS 1882 (1956)
Q Consensus 1865 -----------~dA~~~LG~l~~~lg~~s 1882 (1956)
..+|..+|.++..+|+..
T Consensus 316 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 316 NQQQVPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp -----------CHHHHHHHHHHHHHTCHH
T ss_pred CCcccchhhhHHHHHHHHHHHHHHcCcHH
Confidence 455666666666666553
No 5
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=1.3e-25 Score=257.37 Aligned_cols=297 Identities=12% Similarity=0.070 Sum_probs=272.9
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.++|++|+.. |++++...|.+ +.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 12 ~~~~~g~~~~A~~~--~~~~l~~~p~~----~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 85 (359)
T 3ieg_A 12 KLLAAGQLADALSQ--FHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG 85 (359)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHH--HHHHHhhCccc----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence 44556789999998 99999876654 4599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1654 QDPQAIAALSKCLSIEP---KNLEALMAI------------SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdP---dnaeAl~~L------------A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
++++|+..|+++++.+| ++..++..+ |.++...|++++|+..++++++. .|.
T Consensus 86 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--------- 152 (359)
T 3ieg_A 86 KLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV----CVW--------- 152 (359)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---------
T ss_pred ChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCC---------
Confidence 99999999999999999 888888777 78999999999999999999998 665
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
...++..+|.++...|++++|+..++++++..|.+ +.++..+|.++...|++++|+..|+++++..|++..
T Consensus 153 ------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 223 (359)
T 3ieg_A 153 ------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 223 (359)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCccchH
Confidence 34567889999999999999999999999999998 999999999999999999999999999999999988
Q ss_pred HHH------------HHHHHHHHCCChHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1799 LWN------------RLGASLANGNRPEEAVEAYHTALQLSPGFVR----ARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1799 A~~------------nLG~ay~qlGryeEAie~yeKALeL~Pdnae----A~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
++. .+|.++...|++++|+..|+++++..|++.. ++..+|.++...|++++|+.+|+++++++|
T Consensus 224 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 303 (359)
T 3ieg_A 224 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEP 303 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence 654 4488899999999999999999999999874 467899999999999999999999999999
Q ss_pred CChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+++.++..+|.++...|++.+++ ..++.++...+..
T Consensus 304 ~~~~~~~~~~~~~~~~g~~~~A~-~~~~~a~~~~p~~ 339 (359)
T 3ieg_A 304 DNVNALKDRAEAYLIEEMYDEAI-QDYEAAQEHNEND 339 (359)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTCTTC
T ss_pred ccHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCCC
Confidence 99999999999999999998888 8888888877664
No 6
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.95 E-value=3e-25 Score=254.35 Aligned_cols=313 Identities=14% Similarity=0.089 Sum_probs=273.1
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
++.+...+++++|++++....... +. +.. .|..++ ..+..++++++|+
T Consensus 10 ~~~~~~~g~~~~A~~~~~~~l~~~--p~---------------~~~-------~~~~~a--------~~~~~~~~~~~A~ 57 (359)
T 3ieg_A 10 GKKLLAAGQLADALSQFHAAVDGD--PD---------------NYI-------AYYRRA--------TVFLAMGKSKAAL 57 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TT---------------CHH-------HHHHHH--------HHHHHHTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC--cc---------------cHH-------HHHHHH--------HHHHHccCHHHHH
Confidence 356778899999999987653321 10 111 133333 3556678899999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEP---DNAEVWLSL------------GISLA 1650 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldP---dnaeAl~~L------------A~ay~ 1650 (1956)
.. +++++.+.|.+ ..+++.+|.++...|++++|+..|+++++.+| ++..++..+ |.++.
T Consensus 58 ~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 131 (359)
T 3ieg_A 58 PD--LTKVIALKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131 (359)
T ss_dssp HH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHhCCCc----chHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 99999886654 45999999999999999999999999999999 888888777 78999
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
..|++++|+..|+++++..|++..++..+|.++...|++++|+..+++++.. .|. ...++.
T Consensus 132 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~ 192 (359)
T 3ieg_A 132 DGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KSD---------------NTEAFY 192 (359)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CSC---------------CHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 666 345678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN------------GLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~------------~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
.+|.++...|++++|+..++++++..|.+ ..++. .+|.++...|++++|+..+++++...|+++.
T Consensus 193 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 269 (359)
T 3ieg_A 193 KISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAE 269 (359)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCccc---hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH
Confidence 89999999999999999999999999998 55443 4488899999999999999999999999874
Q ss_pred ----HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1799 ----LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1799 ----A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
++..+|.++...|++++|+..|+++++.+|+++.++..+|.++...|++++|+.+|+++++++|+++.++..++.+
T Consensus 270 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 270 YTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence 4667999999999999999999999999999999999999999999999999999999999999999988888765
Q ss_pred hhhh
Q psy8682 1875 PRAV 1878 (1956)
Q Consensus 1875 ~~~l 1878 (1956)
...+
T Consensus 350 ~~~~ 353 (359)
T 3ieg_A 350 QRLL 353 (359)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 7
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=1.5e-25 Score=255.07 Aligned_cols=278 Identities=17% Similarity=0.107 Sum_probs=241.6
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-C
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-Q 1654 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-d 1654 (1956)
...++|++|+.. +++++...|.++. .+..++.++...|++++|+..++++++.+|+++.++..+|.++...| +
T Consensus 33 ~~~g~~~~A~~~--~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 33 YYNCDFKMCYKL--TSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHTTCHHHHHHH--HHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHcCCHHHHHHH--HHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 344678888888 8888887777665 78888888899999999999999999999999999999999999999 8
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
+++|+.+|+++++.+|++..++..+|.++...|++++|+..++++++. .|. ....+..+|.
T Consensus 107 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~---------------~~~~~~~l~~ 167 (330)
T 3hym_B 107 NEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKG---------------CHLPMLYIGL 167 (330)
T ss_dssp HHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTT---------------CSHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccc---------------cHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999988 555 2334566889
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHHHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR---------PDDSRLWNRLGA 1805 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~---------PdnaeA~~nLG~ 1805 (1956)
++...|++++|+.+++++++..|.+ +.++..+|.++...|++++|+..+++++... |..+.++..+|.
T Consensus 168 ~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~ 244 (330)
T 3hym_B 168 EYGLTNNSKLAERFFSQALSIAPED---PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGH 244 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHH
Confidence 9999999999999999999999988 8889999999999999999999999999876 666788999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccch-hhhccc
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEP-RAVKEM 1881 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~-~~lg~~ 1881 (1956)
++...|++++|+.+|+++++..|++..++..+|.++..+|++++|+.+|+++++++|+++.++..+|.++ ...|+.
T Consensus 245 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 245 VCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 9999999999999999999999999999999999999999999999999999999999998888888876 344443
No 8
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.94 E-value=3.3e-25 Score=252.16 Aligned_cols=276 Identities=14% Similarity=0.134 Sum_probs=259.0
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
.+.++. .++.+|..++..|++++|+..|+++++.+|.+..++..++.++...|++++|+..++++++.+|+++.++
T Consensus 18 ~~~~~~----~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 93 (330)
T 3hym_B 18 LQENLD----VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSW 93 (330)
T ss_dssp --CCCT----THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred chhhHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHH
Confidence 344554 8999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1677 MAISICFTNEA-CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1677 ~~LA~aY~~lG-dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
..+|.++...| ++++|+.++++++.. +|. ...++..+|.++...|++++|+..++++++.
T Consensus 94 ~~l~~~~~~~~~~~~~A~~~~~~a~~~----~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 154 (330)
T 3hym_B 94 FAVGCYYLMVGHKNEHARRYLSKATTL----EKT---------------YGPAWIAYGHSFAVESEHDQAMAAYFTAAQL 154 (330)
T ss_dssp HHHHHHHHHSCSCHHHHHHHHHHHHTT----CTT---------------CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHh----CCc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999 999999999999999 665 3456788999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--------
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-------- 1827 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-------- 1827 (1956)
.|.+ ..++..+|.++...|++++|+..+++++...|.++.++..+|.++...|++++|+..|+++++..
T Consensus 155 ~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 231 (330)
T 3hym_B 155 MKGC---HLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT 231 (330)
T ss_dssp TTTC---SHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT
T ss_pred cccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc
Confidence 9998 88899999999999999999999999999999999999999999999999999999999999986
Q ss_pred -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1828 -PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1828 -PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
|....++..+|.++...|++++|+.+|+++++++|+++.++..+|.++...|++.+++ .++++++...+..
T Consensus 232 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~~~p~~ 303 (330)
T 3hym_B 232 VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAV-DYFHTALGLRRDD 303 (330)
T ss_dssp TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHH-HHHHTTTTTCSCC
T ss_pred ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHH-HHHHHHHccCCCc
Confidence 6677899999999999999999999999999999999999999999999999998888 8888888877654
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=6e-25 Score=263.07 Aligned_cols=297 Identities=12% Similarity=0.075 Sum_probs=263.8
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+...++|++|+.. |++++...|. ++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|
T Consensus 35 ~~~~~g~~~~A~~~--~~~~l~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 108 (450)
T 2y4t_A 35 KLLAAGQLADALSQ--FHAAVDGDPD----NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQG 108 (450)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHH--HHHHHHhCCc----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcC
Confidence 45556789999998 9999877655 45699999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1654 QDPQAIAALSKCLSIEPKNL---EALMAI------------SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdna---eAl~~L------------A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
++++|+..|+++++.+|++. .++..+ |.++...|++++|+..+++++.. .|.
T Consensus 109 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--------- 175 (450)
T 2y4t_A 109 KLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVW--------- 175 (450)
T ss_dssp CHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT---------
T ss_pred CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------
Confidence 99999999999999999988 766555 66699999999999999999998 665
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
...++..+|.+|...|++++|+..|+++++.+|.+ +.++..+|.+|...|++++|+..|++++...|++..
T Consensus 176 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~ 246 (450)
T 2y4t_A 176 ------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDN---TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKR 246 (450)
T ss_dssp ------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred ------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH
Confidence 34567788999999999999999999999999988 889999999999999999999999999999999888
Q ss_pred HHHHH------------HHHHHHCCChHHHHHHHHHHHhhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1799 LWNRL------------GASLANGNRPEEAVEAYHTALQLSPGFV----RARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1799 A~~nL------------G~ay~qlGryeEAie~yeKALeL~Pdna----eA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.+..+ |.++...|++++|+.+|+++++..|+++ .++..+|.++...|++++|+.++++++.++|
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 326 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP 326 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 77666 8899999999999999999999999874 4788899999999999999999999999999
Q ss_pred CChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+++.++..+|.++...|++.+++ ..+++++.+.+..
T Consensus 327 ~~~~~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~ 362 (450)
T 2y4t_A 327 DNVNALKDRAEAYLIEEMYDEAI-QDYETAQEHNEND 362 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHTTSSSC
T ss_pred ccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhCcch
Confidence 99999999999999999988887 7788887776664
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=4.3e-25 Score=264.38 Aligned_cols=310 Identities=15% Similarity=0.088 Sum_probs=272.2
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
+..+...+++++|+.+|....... +. +... |..++ ..+..++++++|+
T Consensus 33 ~~~~~~~g~~~~A~~~~~~~l~~~--p~---------------~~~~-------~~~l~--------~~~~~~g~~~~A~ 80 (450)
T 2y4t_A 33 GKKLLAAGQLADALSQFHAAVDGD--PD---------------NYIA-------YYRRA--------TVFLAMGKSKAAL 80 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TT---------------CHHH-------HHHHH--------HHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--Cc---------------cHHH-------HHHHH--------HHHHHCCCHHHHH
Confidence 356788899999999987653221 10 1122 33333 3455678899999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA---EVWLSL------------GISLA 1650 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdna---eAl~~L------------A~ay~ 1650 (1956)
.. |++++...|.+ ..+++.+|.++...|++++|+..|+++++.+|++. .++..+ |.++.
T Consensus 81 ~~--~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 154 (450)
T 2y4t_A 81 PD--LTKVIQLKMDF----TAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF 154 (450)
T ss_dssp HH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHhcCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 98 99999886654 55999999999999999999999999999999988 776655 66799
Q ss_pred HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
..|++++|+..|+++++..|.+..++..+|.+|...|++++|+..|+++++. +|. ...++.
T Consensus 155 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------~~~~~~ 215 (450)
T 2y4t_A 155 GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL----KND---------------NTEAFY 215 (450)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----HCS---------------CHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC---------------CHHHHH
Confidence 9999999999999999999999999999999999999999999999999998 555 456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL------------GVLFNLSDEYDKAVDCFRSALQVRPDDS- 1797 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~L------------G~ly~~lGdyeEAie~fekALel~Pdna- 1797 (1956)
.+|.++...|++++|+..|+++++..|++ ...+..+ |.++...|++++|+.+|++++.+.|+++
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~ 292 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLDQDH---KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE 292 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH
Confidence 89999999999999999999999999998 7766555 9999999999999999999999999985
Q ss_pred ---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1798 ---RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1798 ---eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.++..+|.++...|++++|+..+++++++.|++..++..+|.++...|++++|+.+|+++++++|+++.++..++.+
T Consensus 293 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 293 YTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999998854
Q ss_pred h
Q psy8682 1875 P 1875 (1956)
Q Consensus 1875 ~ 1875 (1956)
.
T Consensus 373 ~ 373 (450)
T 2y4t_A 373 Q 373 (450)
T ss_dssp H
T ss_pred H
Confidence 3
No 11
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.4e-24 Score=270.01 Aligned_cols=310 Identities=15% Similarity=0.092 Sum_probs=277.4
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
+..|...+++++|++++...... + . +... |..++ ..+...+++++|+
T Consensus 279 ~~~~~~~g~~~~A~~~~~~~~~~---~---~------------~~~~-------~~~l~--------~~~~~~g~~~~A~ 325 (597)
T 2xpi_A 279 LNKTSHEDELRRAEDYLSSINGL---E---K------------SSDL-------LLCKA--------DTLFVRSRFIDVL 325 (597)
T ss_dssp SCTTTTHHHHHHHHHHHHTSTTG---G---G------------CHHH-------HHHHH--------HHHHHTTCHHHHH
T ss_pred HHHHcCcchHHHHHHHHHHhhcC---C---c------------hHHH-------HHHHH--------HHHHHhcCHHHHH
Confidence 45677889999999997644322 1 1 2222 33333 3455667899999
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKC 1665 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKA 1665 (1956)
.. |++++...|.+.. ++..++.++...|++++|+..|+++++..|++..++..+|.+|...|++++|+..|+++
T Consensus 326 ~~--~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 326 AI--TTKILEIDPYNLD----VYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HH--HHHHHHHCTTCCT----THHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH--HHHHHHcCcccHH----HHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 98 9999988777666 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHH
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEA 1745 (1956)
++.+|.+..++..+|.+|...|++++|++.|+++++. .|+ ...++..+|.+|...|++++|
T Consensus 400 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l~~~~~~~g~~~~A 460 (597)
T 2xpi_A 400 STMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL----FQG---------------THLPYLFLGMQHMQLGNILLA 460 (597)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TTT---------------CSHHHHHHHHHHHHHTCHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc---------------chHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999998 554 345677899999999999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHHHHHHHHCCChHHHHH
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDD-SRLWNRLGASLANGNRPEEAVE 1818 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel------~Pdn-aeA~~nLG~ay~qlGryeEAie 1818 (1956)
+.+|+++++..|.+ +.++..+|.+|...|++++|+..|+++++. +|+. ..++..+|.+|...|++++|+.
T Consensus 461 ~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 461 NEYLQSSYALFQYD---PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999999999998 999999999999999999999999999998 5654 7899999999999999999999
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.|+++++..|++..++..+|.+|...|++++|+.+|+++++++|+++.++..++.+|.
T Consensus 538 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 538 ALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988764
No 12
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.94 E-value=7.4e-25 Score=272.42 Aligned_cols=297 Identities=15% Similarity=0.100 Sum_probs=275.8
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
..+...+++++|+.. |++++.. + . +...++.+|..+...|++++|+..|+++++.+|++..++..++.++...
T Consensus 280 ~~~~~~g~~~~A~~~--~~~~~~~-~---~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 352 (597)
T 2xpi_A 280 NKTSHEDELRRAEDY--LSSINGL-E---K-SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHES 352 (597)
T ss_dssp CTTTTHHHHHHHHHH--HHTSTTG-G---G-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHH--HHHhhcC-C---c-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHh
Confidence 455567889999988 7777765 2 2 6779999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
|++++|+..++++++..|++..++..+|.+|...|++++|+.+|+++++. +|. ...++..+
T Consensus 353 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l 413 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM----DPQ---------------FGPAWIGF 413 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC---------------CHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 555 34567889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
+.+|...|++++|++.|+++++..|.+ ..++..+|.+|...|++++|+..|+++++..|.++.++..+|.+|...|+
T Consensus 414 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 490 (597)
T 2xpi_A 414 AHSFAIEGEHDQAISAYTTAARLFQGT---HLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSD 490 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHTTTTC---SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence 999999999999999999999999988 89999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhh------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1813 PEEAVEAYHTALQL------SPGF-VRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1813 yeEAie~yeKALeL------~Pdn-aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+++|+..|+++++. +|+. ..++..+|.+|...|++++|+.+|+++++++|+++.++..+|.++...|++.+++
T Consensus 491 ~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 570 (597)
T 2xpi_A 491 MQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAI 570 (597)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH
Confidence 99999999999998 6665 7899999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhccccCCCC
Q psy8682 1886 WYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1886 ws~Lr~Al~l~gr~ 1899 (1956)
..+++++.+.+..
T Consensus 571 -~~~~~~l~~~p~~ 583 (597)
T 2xpi_A 571 -THLHESLAISPNE 583 (597)
T ss_dssp -HHHHHHHHHCTTC
T ss_pred -HHHHHHHhcCCCC
Confidence 7788887776654
No 13
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.94 E-value=4.6e-25 Score=250.67 Aligned_cols=293 Identities=30% Similarity=0.501 Sum_probs=255.6
Q ss_pred HhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Q psy8682 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672 (1956)
Q Consensus 1593 AlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn 1672 (1956)
.+.+.+.+|..+...++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+..|+++++.+|++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~ 88 (327)
T 3cv0_A 9 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKD 88 (327)
T ss_dssp TSCCCSSCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hccchhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCC
Confidence 35566777866778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc-hhhhhHHHHHHH-HH-HHHhcCCHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS-KLTRLANHTLTF-RS-PLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~-Kl~e~a~a~lnL-A~-ay~~lGdyeEAle~L 1749 (1956)
..++..+|.++...|++++|+..+++++.. .|. ........ ...........+ +. ++...|++++|+.++
T Consensus 89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 161 (327)
T 3cv0_A 89 IAVHAALAVSHTNEHNANAALASLRAWLLS----QPQ---YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLL 161 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----STT---TTTC--------------------CCTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCc---cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHH
Confidence 999999999999999999999999999999 666 22211000 000001111233 33 588899999999999
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+++++..|.+ ..++..+|.++...|++++|+.++++++...|+++.++..+|.++...|++++|+..|+++++..|+
T Consensus 162 ~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 238 (327)
T 3cv0_A 162 HAALEMNPND---AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPG 238 (327)
T ss_dssp HHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHhhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 9999999998 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC------------ChhchhccccchhhhcccHHHHHHHHHhccccC
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA------------THDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPd------------n~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~ 1896 (1956)
+..++..+|.++..+|++++|+.+|++++.+.|+ ++.++..+|.++..+|++.++. ..++.++...
T Consensus 239 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~l~~~ 316 (327)
T 3cv0_A 239 YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE-LTYAQNVEPF 316 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH-HHTTCCSHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHhc
Confidence 9999999999999999999999999999999999 7889999999999999987776 5555554443
No 14
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.3e-24 Score=260.92 Aligned_cols=347 Identities=14% Similarity=0.041 Sum_probs=258.4
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
++.+...++|++|+.+|....... + +... |..++ ..+..+++|++|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~al~~~--p----------------~~~~-------~~~la--------~~~~~~g~~~~A~ 59 (514)
T 2gw1_A 13 GNQFFRNKKYDDAIKYYNWALELK--E----------------DPVF-------YSNLS--------ACYVSVGDLKKVV 59 (514)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHHHC--C----------------CHHH-------HHHHH--------HHHHHHTCHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhcC--c----------------cHHH-------HHhHH--------HHHHHHhhHHHHH
Confidence 356778899999999987554322 1 1112 22222 3445566788888
Q ss_pred hchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------------------------
Q psy8682 1586 RSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN--------------------------- 1638 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn--------------------------- 1638 (1956)
.. +++++...|.+ ..+++.+|.++...|++++|+..|++++...|.+
T Consensus 60 ~~--~~~al~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 133 (514)
T 2gw1_A 60 EM--STKALELKPDY----SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDI 133 (514)
T ss_dssp HH--HHHHHHHCSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----
T ss_pred HH--HHHHhccChHH----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77 77777765543 4478888888888888888888888887766522
Q ss_pred ----------------------------------------------------HHHHHHHHHHHHH---cCChHHHHHHHH
Q psy8682 1639 ----------------------------------------------------AEVWLSLGISLAE---NEQDPQAIAALS 1663 (1956)
Q Consensus 1639 ----------------------------------------------------aeAl~~LA~ay~~---lGdyeEALe~ye 1663 (1956)
..++..+|.++.. .|++++|+..|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 213 (514)
T 2gw1_A 134 DTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFT 213 (514)
T ss_dssp -----------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHH
T ss_pred HHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHH
Confidence 5556666666665 777777777777
Q ss_pred HHHH-----h--C-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCc-------c--
Q psy8682 1664 KCLS-----I--E-------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP-------S-- 1720 (1956)
Q Consensus 1664 KALe-----L--d-------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~-------~-- 1720 (1956)
++++ + . |....++..+|.++...|++++|+.++++++.. +|....+..+... .
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~l~~~~~~~~~~~~A 289 (514)
T 2gw1_A 214 KAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL----FPRVNSYIYMALIMADRNDSTEY 289 (514)
T ss_dssp HHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH----CCCHHHHHHHHHHHHTSSCCTTG
T ss_pred HHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CccHHHHHHHHHHHHHCCCHHHH
Confidence 7777 4 3 334556777777777777788887777777776 4431111110000 0
Q ss_pred ---------hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1721 ---------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1721 ---------Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..+....++..+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..|+++++
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 366 (514)
T 2gw1_A 290 YNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPEN---IFPYIQLACLAYRENKFDDCETLFSEAKR 366 (514)
T ss_dssp GGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC---SHHHHHHHHHTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 013455677888888888899999999999998888887 77888888888888999999999999988
Q ss_pred hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH------HHHHHHHHHHH---cCCHHHHHHHHHHHHHhcC
Q psy8682 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR------ARYNLGITCVH---LGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1792 l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae------A~~~LA~ay~k---lGdyEEAie~yekALeLdP 1862 (1956)
..|+++.++..+|.++...|++++|+..|++++...|++.. ++..+|.++.. .|++++|+.+|++++.++|
T Consensus 367 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 367 KFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 88888888888999999999999999999998888777644 88888998888 8999999999999999988
Q ss_pred CChhchhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1863 ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1863 dn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
+++.++..+|.++...|++.+++ ..++.++...+..
T Consensus 447 ~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~~~~~~~ 482 (514)
T 2gw1_A 447 RSEQAKIGLAQMKLQQEDIDEAI-TLFEESADLARTM 482 (514)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHCSSH
T ss_pred ccHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHhcccc
Confidence 88888888888888888887777 7778887777664
No 15
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.6e-23 Score=228.18 Aligned_cols=238 Identities=15% Similarity=0.142 Sum_probs=224.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN-------LEAL 1676 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn-------aeAl 1676 (1956)
.++.++.+|..++..|++++|+.+|+++++.+ .++.++..+|.++...|++++|+..+++++++.|++ ..++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 56789999999999999999999999999999 999999999999999999999999999999998876 7899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC 1756 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~ 1756 (1956)
..+|.++...|++++|+.++++++.. .|. +.++...|++++|+..+++++...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~-----------------------~~~~~~~~~~~~a~~~~~~~~~~~ 135 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE----HRT-----------------------ADILTKLRNAEKELKKAEAEAYVN 135 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CCC-----------------------HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc----Cch-----------------------hHHHHHHhHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999998 665 356778889999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHH
Q psy8682 1757 PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1757 P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~ 1836 (1956)
|.. ..++..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+..|+++++.+|++..++..
T Consensus 136 ~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 212 (258)
T 3uq3_A 136 PEK---AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR 212 (258)
T ss_dssp HHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cch---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 988 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc------CCChhchhccc
Q psy8682 1837 LGITCVHLGANTQAVEHFLTALNQQ------AATHDGLTPHG 1872 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~yekALeLd------Pdn~dA~~~LG 1872 (1956)
+|.++..+|++++|+.+|+++++++ |++..++..++
T Consensus 213 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 213 KATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHH
Confidence 9999999999999999999999999 77665554443
No 16
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=2.8e-23 Score=253.91 Aligned_cols=285 Identities=13% Similarity=0.063 Sum_probs=248.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.++.++.+|..++..|++++|+..|++++..+|+++.++..+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchh---------------------------------------------------
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSA--------------------------------------------------- 1712 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~ea--------------------------------------------------- 1712 (1956)
...|++++|+..|+ ++.. +|+...
T Consensus 104 ~~~g~~~~A~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (537)
T 3fp2_A 104 ESLGNFTDAMFDLS-VLSL----NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL 178 (537)
T ss_dssp HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred HHcCCHHHHHHHHH-HHhc----CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence 99999999999885 6654 333000
Q ss_pred ---------------------------------------h-------hhhcCcc-----hhhhhHHHHHHHHHHHHhcCC
Q psy8682 1713 ---------------------------------------Y-------KADALPS-----KLTRLANHTLTFRSPLSSREI 1741 (1956)
Q Consensus 1713 ---------------------------------------y-------~~Ll~~~-----Kl~e~a~a~lnLA~ay~~lGd 1741 (1956)
+ ..+.... -....+.++..+|.++...|+
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp HHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc
Confidence 0 0000000 001124467888999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Q psy8682 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821 (1956)
Q Consensus 1742 yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~ye 1821 (1956)
+++|+..++++++..|. ..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+..|+
T Consensus 259 ~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 334 (537)
T 3fp2_A 259 LLDAQVLLQESINLHPT----PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQ 334 (537)
T ss_dssp HHHHHHHHHHHHHHCCC----HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCC----chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999999999887 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1822 KALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
++++.+|++..++..+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++.+++ ..+..++...+.
T Consensus 335 ~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~a~~~~~~ 410 (537)
T 3fp2_A 335 KAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAI-KQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHH-HHHHHHHHcCCc
Confidence 9999999999999999999999999999999999999999999999999999999999998887 777777666543
No 17
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.92 E-value=4.7e-23 Score=251.93 Aligned_cols=297 Identities=15% Similarity=0.133 Sum_probs=256.3
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
..+.-.++|++|+.. |++++...|.+ +.+++.+|.++...|++++|+..|+++++.+|+++.+++.+|.++...
T Consensus 33 ~~~~~~g~~~~A~~~--~~~al~~~p~~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~ 106 (537)
T 3fp2_A 33 NHFFTAKNFNEAIKY--YQYAIELDPNE----PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106 (537)
T ss_dssp HHHHHTTCCC-CHHH--HHHHHHHCTTC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH--HHHHHhhCCCC----cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHc
Confidence 455667889999998 99999887665 459999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHH---------------------------------------------------------------------
Q psy8682 1653 EQDPQAIAALS--------------------------------------------------------------------- 1663 (1956)
Q Consensus 1653 GdyeEALe~ye--------------------------------------------------------------------- 1663 (1956)
|++++|+..|+
T Consensus 107 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (537)
T 3fp2_A 107 GNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTS 186 (537)
T ss_dssp TCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCC
T ss_pred CCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhc
Confidence 99888887663
Q ss_pred ----------------------------------------HHHHhCCCCHH-------HHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1664 ----------------------------------------KCLSIEPKNLE-------ALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1664 ----------------------------------------KALeLdPdnae-------Al~~LA~aY~~lGdydEALe~l 1696 (1956)
++++.+|++.. ++..+|.++...|++++|+..+
T Consensus 187 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~ 266 (537)
T 3fp2_A 187 SNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLL 266 (537)
T ss_dssp CSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 22333455433 3556666777777777777777
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l 1776 (1956)
++++.. +|+ ..++..+|.++...|++++|+.+++++++..|.+ +.++..+|.++...
T Consensus 267 ~~~~~~----~~~----------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 323 (537)
T 3fp2_A 267 QESINL----HPT----------------PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEY---PPTYYHRGQMYFIL 323 (537)
T ss_dssp HHHHHH----CCC----------------HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHT
T ss_pred HHHHhc----CCC----------------chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCC---HHHHHHHHHHHHhc
Confidence 777776 433 4567789999999999999999999999999998 99999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLT 1856 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yek 1856 (1956)
|++++|+..|++++...|++..++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|++
T Consensus 324 ~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 324 QDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhchhccc------cchhhh----------cccHHHHHHHHHhccccCCCC
Q psy8682 1857 ALNQQAATHDGLTPHG------LEPRAV----------KEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1857 ALeLdPdn~dA~~~LG------~l~~~l----------g~~seAIws~Lr~Al~l~gr~ 1899 (1956)
++++.|++...+..+| .++... |++.+++ ..+++++...+..
T Consensus 404 a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~-~~~~~a~~~~p~~ 461 (537)
T 3fp2_A 404 AKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAI-KLLTKACELDPRS 461 (537)
T ss_dssp HHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHH-HHHHHHHHHCTTC
T ss_pred HHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHH-HHHHHHHHhCCCC
Confidence 9999999888777664 666667 8887777 7788887776654
No 18
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.92 E-value=1.8e-23 Score=243.17 Aligned_cols=262 Identities=17% Similarity=0.146 Sum_probs=239.9
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+...++|++|+.. |++++...|. +..+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|
T Consensus 73 ~~~~~g~~~~A~~~--~~~al~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 146 (368)
T 1fch_A 73 RRLQEGDLPNAVLL--FEAAVQQDPK----HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNES 146 (368)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHSCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHH--HHHHHHhCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 44556789999998 9999987655 45599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALM----------------AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~----------------~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
++++|+..|+++++..|++...+. .++.++ ..|++++|+.+++++++. +|. .
T Consensus 147 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~----~p~---~---- 214 (368)
T 1fch_A 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRL----DPT---S---- 214 (368)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHH----STT---S----
T ss_pred CHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHh----CcC---c----
Confidence 999999999999999998876654 466666 999999999999999999 665 1
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
.....+..+|.++...|++++|+.+|+++++..|.+ +.++..+|.++...|++++|+..|++++++.|++.
T Consensus 215 ------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 285 (368)
T 1fch_A 215 ------IDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND---YLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI 285 (368)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred ------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 135677889999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-----------VRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-----------aeA~~~LA~ay~klGdyEEAie~yekALeLdP 1862 (1956)
.++..+|.++..+|++++|+.+|++++++.|++ ..++..+|.++..+|++++|..+++++++..+
T Consensus 286 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~ 361 (368)
T 1fch_A 286 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLL 361 (368)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHHHHHH
Confidence 999999999999999999999999999999887 89999999999999999999999998877643
No 19
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.91 E-value=3.7e-23 Score=250.11 Aligned_cols=345 Identities=13% Similarity=0.105 Sum_probs=263.9
Q ss_pred cchhhccCChHHHHHHHHHhcCCCCCCCCCcCCCcCCCCCCCCchHHHHHHHHHHHHHHHhcCCCCCChhhhhhhHHHHH
Q psy8682 1506 PNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQ 1585 (1956)
Q Consensus 1506 ~n~yg~l~~fDEAIevfk~f~g~~i~~qa~es~~s~~~t~~~~d~~yWdkLq~~we~l~kr~~s~~~~a~~WL~dYeeAL 1585 (1956)
+.++...|++++|++.+............... +. .....|..++ .++..+++|++|+
T Consensus 58 g~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-----------~~----~~~~~~~nla--------~~y~~~g~~~~A~ 114 (472)
T 4g1t_A 58 AYLKHLKGQNEAALECLRKAEELIQQEHADQA-----------EI----RSLVTWGNYA--------WVYYHMGRLSDVQ 114 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-----------TT----TTHHHHHHHH--------HHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-----------ch----HHHHHHHHHH--------HHHHHcCChHHHH
Confidence 35688889999999998654332200000000 00 0011233333 4667788999999
Q ss_pred hchhhHhHhhhhccCC----CccHHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCChH
Q psy8682 1586 RSSVSMHEYTFAEDNP----MQNETNAFALGQEKLRQ--GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE---NEQDP 1656 (1956)
Q Consensus 1586 s~s~ydKAlqL~p~NP----~~daeall~LG~aylk~--GdydEAIe~fekALeldPdnaeAl~~LA~ay~~---lGdye 1656 (1956)
.. |++++.+.+..+ ...+.++..+|.++... ++|++|+.+|+++++++|+++.++..+|.++.. .++++
T Consensus 115 ~~--~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~ 192 (472)
T 4g1t_A 115 IY--VDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQ 192 (472)
T ss_dssp HH--HHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HH--HHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHH
Confidence 88 999988765422 12577888898887765 479999999999999999999999999988654 57889
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1657 QAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1657 EALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+|++.|+++++++|++..++..+|..+.. .+++++|..++++++.. +|. ...++..+
T Consensus 193 ~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~---------------~~~~~~~l 253 (472)
T 4g1t_A 193 NAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK----APG---------------VTDVLRSA 253 (472)
T ss_dssp CTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH----CSS---------------CHHHHHHH
T ss_pred HHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh----Ccc---------------HHHHHHHH
Confidence 99999999999999999999988877655 46788999999999998 666 44567889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-------------------CCHHHHHHHHHHHHHhC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-------------------DEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-------------------GdyeEAie~fekALel~ 1793 (1956)
|.+|...|++++|+..++++++..|++ +.++..+|.+|... +.+++|+..|++++.++
T Consensus 254 g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~ 330 (472)
T 4g1t_A 254 AKFYRRKDEPDKAIELLKKALEYIPNN---AYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN 330 (472)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCchHHHHHHHHHHHHhCCCh---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Confidence 999999999999999999999999999 99999999988643 34678999999999999
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH---HHHHHHHH-HHHcCCHHHHHHHHHHHHHh---------
Q psy8682 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR---ARYNLGIT-CVHLGANTQAVEHFLTALNQ--------- 1860 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae---A~~~LA~a-y~klGdyEEAie~yekALeL--------- 1860 (1956)
|.+..++..+|.++...|++++|+.+|++++++.|+... .+..+|.+ +...|++++|+.+|++++++
T Consensus 331 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~ 410 (472)
T 4g1t_A 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK 410 (472)
T ss_dssp TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999999999999999887654 45667654 45789999999999998866
Q ss_pred ---------------cCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1861 ---------------QAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1861 ---------------dPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
+|+++.++..+|.++...|++.+|+ .++++|+..-+.
T Consensus 411 ~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~-~~y~kALe~~~~ 462 (472)
T 4g1t_A 411 MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD-EDSERGLESGSL 462 (472)
T ss_dssp HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----------------
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhcCCC
Confidence 5667789999999999999999988 788888776544
No 20
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.3e-23 Score=246.95 Aligned_cols=305 Identities=11% Similarity=-0.002 Sum_probs=272.7
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
..+...++|++|+.. |++++...| ++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...
T Consensus 14 ~~~~~~g~~~~A~~~--~~~al~~~p-----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKY--YNWALELKE-----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHTSCHHHHHHH--HHHHHHHCC-----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHhccHHHHHHH--HHHHHhcCc-----cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 355667899999998 999998764 3669999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhCCCC------------------------------------------------------------
Q psy8682 1653 EQDPQAIAALSKCLSIEPKN------------------------------------------------------------ 1672 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdn------------------------------------------------------------ 1672 (1956)
|++++|+..|+++++..|.+
T Consensus 87 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMAS 166 (514)
T ss_dssp TCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHH
Confidence 99999999999999887632
Q ss_pred -------------------HHHHHHHHHHHHH---cCCHHHHHHHHHHHHh-----cCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1673 -------------------LEALMAISICFTN---EACLHDALDTLKDKIR-----PGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1673 -------------------aeAl~~LA~aY~~---lGdydEALe~leKALe-----lg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
..++..+|.++.. .|++++|+.++++++. . ..+|+ ... ..+..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~---~~~-----~~~~~ 236 (514)
T 2gw1_A 167 FFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL--DKNNE---DEK-----LKEKL 236 (514)
T ss_dssp HHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHT--TTSTT---CHH-----HHHHH
T ss_pred HHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhh--ccCcc---ccc-----cChHH
Confidence 6667778887776 8999999999999998 3 11222 000 01456
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
..++..+|.++...|++++|+..++++++..|. ..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 312 (514)
T 2gw1_A 237 AISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR----VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQ 312 (514)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC----HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHH
Confidence 778899999999999999999999999999886 7899999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++...|++++|+..|+++++..|.+..++..+|.++...|++++|+.+|+++++..|+++.++..+|.++...|++.+++
T Consensus 313 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 392 (514)
T 2gw1_A 313 MNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKAL 392 (514)
T ss_dssp HHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred HHHHHhccccCCCC
Q psy8682 1886 WYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1886 ws~Lr~Al~l~gr~ 1899 (1956)
..+..++...+..
T Consensus 393 -~~~~~a~~~~~~~ 405 (514)
T 2gw1_A 393 -KQYDLAIELENKL 405 (514)
T ss_dssp -HHHHHHHHHHHTS
T ss_pred -HHHHHHHHhhhcc
Confidence 6677776655443
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.91 E-value=2.5e-23 Score=252.67 Aligned_cols=250 Identities=12% Similarity=0.027 Sum_probs=234.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ-DPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd-yeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
...++..+|.++...|++++|+..|++++.++|++..+|+.+|.++..+|+ +++|+..|+++++++|++..+|+++|.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 566999999999999999999999999999999999999999999999997 9999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
+..+|++++|+.+|++++++ +|+ ...++.++|.++...|++++|+.+|+++++++|.+
T Consensus 176 ~~~~g~~~eAl~~~~kal~l----dP~---------------~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~--- 233 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQ----DAK---------------NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--- 233 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---
T ss_pred HHHccCHHHHHHHHHHHHHh----Ccc---------------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---
Confidence 99999999999999999999 777 45678899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHhCCCCHHHHHHHHHHHHHCC--ChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1763 PDVQNGLGVLFNL-SDEYDKA-----VDCFRSALQVRPDDSRLWNRLGASLANGN--RPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1763 a~a~~~LG~ly~~-lGdyeEA-----ie~fekALel~PdnaeA~~nLG~ay~qlG--ryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
..+|+++|.++.. .|.+++| +.+|++++.++|++..+|+++|.++...| ++++|+..++++ +.+|++..++
T Consensus 234 ~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al 312 (382)
T 2h6f_A 234 NSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLI 312 (382)
T ss_dssp HHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHH
Confidence 9999999999999 5555788 59999999999999999999999999988 699999999998 9999999999
Q ss_pred HHHHHHHHHcC---------CHHHHHHHHHHH-HHhcCCChhchhccccchh
Q psy8682 1835 YNLGITCVHLG---------ANTQAVEHFLTA-LNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1835 ~~LA~ay~klG---------dyEEAie~yekA-LeLdPdn~dA~~~LG~l~~ 1876 (1956)
..||.+|.++| .+++|+.+|+++ ++++|.....|..++..+.
T Consensus 313 ~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 313 AFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 99999999985 259999999999 9999999998888876554
No 22
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.91 E-value=3.9e-23 Score=230.62 Aligned_cols=251 Identities=11% Similarity=0.095 Sum_probs=224.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN----LEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn----aeAl~~L 1679 (1956)
+++.++..|..++..|++++|+..|+++++.+|+++.++..+|.++...|++++|+..|+++++ .|.+ ..++..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 3458899999999999999999999999999999999999999999999999999999999999 4433 4568999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
|.++...|++++|+.+++++++. +|. ...++..+|.++...|++++|+.+|+++++.+|.+
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~----~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~ 141 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDR----DTT---------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH----STT---------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc----Ccc---------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999 666 34567889999999999999999999999999998
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhC---CC----
Q psy8682 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR---PEEAVEAYHTALQLS---PG---- 1829 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr---yeEAie~yeKALeL~---Pd---- 1829 (1956)
..++..+|......+++++|+..|+++++..|++..++..+|.++...|+ +++|+..|+++++.. |+
T Consensus 142 ---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 218 (272)
T 3u4t_A 142 ---PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218 (272)
T ss_dssp ---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchH
Confidence 99999999445556799999999999999999999999999999999999 999999999999875 44
Q ss_pred -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1830 -FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1830 -naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
...++..+|.+|...|++++|+.+|+++++++|+++.++-.++.+...
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 246899999999999999999999999999999999998888775543
No 23
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.90 E-value=6.4e-23 Score=233.02 Aligned_cols=261 Identities=15% Similarity=0.130 Sum_probs=238.1
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
...++|++|+.. |++++...|. +..+++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++
T Consensus 32 ~~~~~~~~A~~~--~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~ 105 (327)
T 3cv0_A 32 LKLANLAEAALA--FEAVCQAAPE----REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNA 105 (327)
T ss_dssp HHTTCHHHHHHH--HHHHHHHCTT----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHhccHHHHHHH--HHHHHHhCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCH
Confidence 345688999988 8888877655 4569999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcc
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAI--------------SI-CFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~L--------------A~-aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~ 1720 (1956)
++|+..|+++++..|.+...+..+ +. ++...|++++|+.+++++++. .|.
T Consensus 106 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~----------- 170 (327)
T 3cv0_A 106 NAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM----NPN----------- 170 (327)
T ss_dssp HHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH----STT-----------
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh----CCC-----------
Confidence 999999999999999988777776 66 688899999999999999998 555
Q ss_pred hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW 1800 (1956)
Q Consensus 1721 Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~ 1800 (1956)
...++..+|.++...|++++|+.+++++++..|.+ ..++..+|.++...|++++|+..|+++++..|++..++
T Consensus 171 ----~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 243 (327)
T 3cv0_A 171 ----DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD---AQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVM 243 (327)
T ss_dssp ----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHH
Confidence 34567889999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQLSPG------------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALeL~Pd------------naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
..+|.++...|++++|+..|++++...|+ +..++..+|.++..+|++++|..++++++...|+.
T Consensus 244 ~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 244 YNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcchh
Confidence 99999999999999999999999999999 89999999999999999999999999999887763
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.90 E-value=4.4e-23 Score=241.49 Aligned_cols=260 Identities=17% Similarity=0.145 Sum_probs=229.1
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
.+.-.++|++|+.. |++++...|.+ +.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.+|...|
T Consensus 74 ~~~~~g~~~~A~~~--~~~al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 74 KRLKEGDLPVTILF--MEAAILQDPGD----AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHH--HHHHHHhCcCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccc
Confidence 34456789999998 99999886654 5599999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhh
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMA----------ISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLT 1723 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~----------LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~ 1723 (1956)
++++|+..|++++++.|++..++.. +|.++...|++++|+.+++++++. +|. .
T Consensus 148 ~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~---~---------- 210 (365)
T 4eqf_A 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGD---M---------- 210 (365)
T ss_dssp CHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----SCS---S----------
T ss_pred cHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----CcC---c----------
Confidence 9999999999999999876665554 499999999999999999999999 665 1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
....++..+|.++...|++++|+.+|+++++..|.+ +.++..+|.+|...|++++|+.+|++++++.|+++.++..+
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l 287 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED---YSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNL 287 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHH
Confidence 135578889999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG------------FVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd------------naeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
|.+|..+|++++|+.+|++++++.|+ +..+|..++.++..+|+.+.|..+..+.+.
T Consensus 288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l~ 355 (365)
T 4eqf_A 288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLD 355 (365)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCCG
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhHH
Confidence 99999999999999999999999877 357899999999999999998877766443
No 25
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.90 E-value=1e-20 Score=235.74 Aligned_cols=156 Identities=17% Similarity=0.205 Sum_probs=131.1
Q ss_pred HHHHHHhhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Q psy8682 754 CFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRAR 833 (1956)
Q Consensus 754 lFerALkkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErAR 833 (1956)
+|+++++.+|.+...|..++..+. .++ ..+|+.+|++++..+|.+..+|..|+.++.+.|++++|+
T Consensus 1 ~le~al~~~P~~~~~w~~l~~~~~-------~~~-------~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~ 66 (530)
T 2ooe_A 1 MAEKKLEENPYDLDAWSILIREAQ-------NQP-------IDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVE 66 (530)
T ss_dssp CHHHHHHHCTTCHHHHHHHHHHHH-------SSC-------HHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred ChhhHhhhCCCCHHHHHHHHHHHH-------hCC-------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 478999999999999999997532 222 557899999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCHHHHHHHHHHHH-HcCChHHHHH----HHHHHHHh---CCCCHHHHHHHHHHHHH---------cCC
Q psy8682 834 SIYERALDVDHRNITLWLKYTELEM-RNRQVNHARN----LWDRAVTI---LPRANQFWYKYTYMEEM---------LEN 896 (1956)
Q Consensus 834 sIfERALs~~Pk~~dLWl~YadfE~-k~gnierARs----LFERAL~~---~Pks~~LW~kYidfE~k---------~Gd 896 (1956)
.+|+|+|...| +.++|..|+.++. ..|+++.||. +|++++.. .|.+..+|..|+.||.+ .|+
T Consensus 67 ~~~~ral~~~p-~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 145 (530)
T 2ooe_A 67 KLFQRCLMKVL-HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQR 145 (530)
T ss_dssp HHHHHHTTTCC-CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHH
T ss_pred HHHHHHHhcCC-ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhH
Confidence 99999999999 6899999998764 4677766655 89999875 45668999999999987 789
Q ss_pred HHHHHHHHHhhc--cCc--hHHHHHHHHhhcc
Q psy8682 897 VAGKLFVFHRDS--ISQ--VTLWLGALTLSLE 924 (1956)
Q Consensus 897 ~e~aR~VfERAL--~~~--~~LWl~Yi~fEle 924 (1956)
.++||.+|+|++ |.. ..+|..|..|+..
T Consensus 146 ~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~ 177 (530)
T 2ooe_A 146 ITAVRRVYQRGCVNPMINIEQLWRDYNKYEEG 177 (530)
T ss_dssp HHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhHHHHHHHHHHHHHh
Confidence 999999999999 322 4688888766543
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.7e-21 Score=233.89 Aligned_cols=342 Identities=15% Similarity=0.096 Sum_probs=264.9
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhcc------CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCC
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAED------NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE--------PDN 1638 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~------NP~~daeall~LG~aylk~GdydEAIe~fekALeld--------Pdn 1638 (1956)
.++..+++|++|+.. |++++++.+. +|. .+.++.++|.+|...|++++|+.+|++++++. +..
T Consensus 59 ~~~~~~G~~~eAl~~--~~kAl~~~~~~~~~~~~~~-~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 59 YLKHLKGQNEAALEC--LRKAEELIQQEHADQAEIR-SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHHHHHSGGGCTTT-THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHCCCHHHHHHH--HHHHHHHHHhcCccccchH-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 345567899999998 9999887432 344 67789999999999999999999999999863 456
Q ss_pred HHHHHHHHHHHHHc--CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhcCCCCCCCchhh
Q psy8682 1639 AEVWLSLGISLAEN--EQDPQAIAALSKCLSIEPKNLEALMAISICFTN---EACLHDALDTLKDKIRPGQESNPRPSAY 1713 (1956)
Q Consensus 1639 aeAl~~LA~ay~~l--GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~---lGdydEALe~leKALelg~e~dPd~eay 1713 (1956)
+.++..+|.++... ++|++|+.+|+++++++|+++.++..++.++.. .+++++|++.+++++++ +|+
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l----~p~---- 207 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL----NPD---- 207 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH----CSS----
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc----CCc----
Confidence 78899998887765 479999999999999999999999999988654 57788999999999999 777
Q ss_pred hhhcCcchhhhhHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1714 KADALPSKLTRLANHTLTFRS----PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1714 ~~Ll~~~Kl~e~a~a~lnLA~----ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...++..+|. ++...+++++|..++++++..+|.. ..++..+|.+|...|++++|+..|+++
T Consensus 208 -----------~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 208 -----------NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV---TDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp -----------CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccH---HHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 2223344444 4445678899999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHC-------------------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH
Q psy8682 1790 LQVRPDDSRLWNRLGASLANG-------------------NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~ql-------------------GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA 1850 (1956)
++..|+++.++..+|.+|... +.+++|+..|+++++++|.+..++..+|.++...|++++|
T Consensus 274 l~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A 353 (472)
T 4g1t_A 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEA 353 (472)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHH
T ss_pred HHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHH
Confidence 999999999999999998643 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChh---chhccccch-hhhcccHHHHHHHHHhccccCCCCcccccccCcchhHHHHHHhhcCCCCCC
Q psy8682 1851 VEHFLTALNQQAATHD---GLTPHGLEP-RAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCSDDDDD 1926 (1956)
Q Consensus 1851 ie~yekALeLdPdn~d---A~~~LG~l~-~~lg~~seAIws~Lr~Al~l~gr~~~al~Laq~~~~~~~~Ra~~~~~dde~ 1926 (1956)
+.+|++++.++|++.. .+..+|.++ ...|++.+|+ .++.+++.+.++.......... ...... ..+...+.+
T Consensus 354 ~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai-~~y~kal~i~~~~~~~~~~~~~-l~~~~~--~~l~~~p~~ 429 (472)
T 4g1t_A 354 EYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI-HHFIEGVKINQKSREKEKMKDK-LQKIAK--MRLSKNGAD 429 (472)
T ss_dssp HHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH-HHHHHHHHSCCCCHHHHHHHHH-HHHHHH--HHHHHCC-C
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHhcCcccHHHHHHHHH-HHHHHH--HHHHhCCCC
Confidence 9999999999987654 355666544 4567777777 7788888877664221111000 000001 112223455
Q ss_pred CCCcchhHHHHHHHhhh
Q psy8682 1927 PSGYQPCTKLHNLSGVL 1943 (1956)
Q Consensus 1927 peg~q~~~kL~~lsG~l 1943 (1956)
+..+..+..++...|-.
T Consensus 430 ~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 430 SEALHVLAFLQELNEKM 446 (472)
T ss_dssp TTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCH
Confidence 66666666666665543
No 27
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.88 E-value=1.7e-21 Score=215.84 Aligned_cols=209 Identities=21% Similarity=0.244 Sum_probs=169.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
++.+++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34578888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...+ ... +. .....|++++|+..|+++++++|++ +
T Consensus 84 ~~~~------------~~~-----~~-------------------------~~~~~g~~~~A~~~~~~al~~~P~~---~ 118 (217)
T 2pl2_A 84 VALY------------RQA-----ED-------------------------RERGKGYLEQALSVLKDAERVNPRY---A 118 (217)
T ss_dssp HHHH------------HTC-----SS-------------------------HHHHHHHHHHHHHHHHHHHHHCTTC---H
T ss_pred HHhh------------hhh-----hh-------------------------hcccccCHHHHHHHHHHHHHhCccc---H
Confidence 6542 001 00 1223589999999999999999999 9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.++..+|.++..+|++++|+..|+++++++ +++.++.++|.++..+|++++|+..|+++++++|++..++..+|.++..
T Consensus 119 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 119 PLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence 999999999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHH
Q psy8682 1844 LGANTQAVEHFLTAL 1858 (1956)
Q Consensus 1844 lGdyEEAie~yekAL 1858 (1956)
+|++++|+..|+++-
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999998764
No 28
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=4.7e-22 Score=232.86 Aligned_cols=295 Identities=13% Similarity=0.063 Sum_probs=250.7
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHH
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGI 1647 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA~ 1647 (1956)
.....++|++|+.. |++++.+.|.++...+.+++.+|.++...|++++|+.+|++++.. .|..+.++..+|.
T Consensus 18 ~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 95 (406)
T 3sf4_A 18 RLCKSGDCRAGVSF--FEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN 95 (406)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHH--HHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 45556789999998 999999877776545678999999999999999999999999877 3445778999999
Q ss_pred HHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHh
Q psy8682 1648 SLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEAC--------------------LHDALDTLKDKIR 1701 (1956)
Q Consensus 1648 ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~LA~aY~~lGd--------------------ydEALe~leKALe 1701 (1956)
++...|++++|+.++++++++.+.. ..++..+|.+|...|+ +++|+.++++++.
T Consensus 96 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 175 (406)
T 3sf4_A 96 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLS 175 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986543 4588999999999999 9999999999988
Q ss_pred cCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCC
Q psy8682 1702 PGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDE 1778 (1956)
Q Consensus 1702 lg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGd 1778 (1956)
+ ..... ..+....++..+|.++...|++++|+.++++++++.+.. .....++..+|.++...|+
T Consensus 176 ~----------~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 242 (406)
T 3sf4_A 176 L----------VTALG---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGE 242 (406)
T ss_dssp H----------HHHTT---CHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred H----------HHhcc---CcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 7 33322 124566788999999999999999999999999886654 1123489999999999999
Q ss_pred HHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCC
Q psy8682 1779 YDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1779 yeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGd 1846 (1956)
+++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++++.+.. ..++..+|.+|..+|+
T Consensus 243 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 322 (406)
T 3sf4_A 243 FETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGN 322 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCC
Confidence 999999999999887655 6789999999999999999999999999875433 6689999999999999
Q ss_pred HHHHHHHHHHHHHhcCCC------hhchhccccchhhhcccHH
Q psy8682 1847 NTQAVEHFLTALNQQAAT------HDGLTPHGLEPRAVKEMSD 1883 (1956)
Q Consensus 1847 yEEAie~yekALeLdPdn------~dA~~~LG~l~~~lg~~se 1883 (1956)
+++|+.+|++++++.+.. ..++..+|.++...|+...
T Consensus 323 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 323 HDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 999999999999985543 4577778887777776643
No 29
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.87 E-value=1.8e-21 Score=227.93 Aligned_cols=283 Identities=14% Similarity=0.111 Sum_probs=243.3
Q ss_pred CCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------C
Q psy8682 1601 PMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSIE------P 1670 (1956)
Q Consensus 1601 P~~daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~lGdyeEALe~yeKALeLd------P 1670 (1956)
+...+..++.+|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+|++++.+. |
T Consensus 5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 84 (406)
T 3sf4_A 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL 84 (406)
T ss_dssp CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH
Confidence 33467789999999999999999999999999999998 4688999999999999999999999998873 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC---------
Q psy8682 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI--------- 1741 (1956)
Q Consensus 1671 dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd--------- 1741 (1956)
....++..+|.+|...|++++|+.++++++.+ .| .... ......++..+|.++...|+
T Consensus 85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~------~~~~---~~~~~~~~~~l~~~~~~~g~~~~~~~~~~ 151 (406)
T 3sf4_A 85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI----SR------ELND---KVGEARALYNLGNVYHAKGKSFGCPGPQD 151 (406)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HH------HHTC---HHHHHHHHHHHHHHHHHHHHTCC------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HH------hccc---ccchHHHHHHHHHHHHHcCCcccccccch
Confidence 45678999999999999999999999999998 22 2221 13456788999999999999
Q ss_pred -----------HHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHH
Q psy8682 1742 -----------HQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS------RLWN 1801 (1956)
Q Consensus 1742 -----------yeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna------eA~~ 1801 (1956)
+++|+.++.+++.+.+.. .....++..+|.++...|++++|+.++++++.+.+... .++.
T Consensus 152 ~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 231 (406)
T 3sf4_A 152 VGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYS 231 (406)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 999999999998873221 11256899999999999999999999999998865443 4899
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------hhchh
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT------HDGLT 1869 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn------~dA~~ 1869 (1956)
.+|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++.
T Consensus 232 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 311 (406)
T 3sf4_A 232 NLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 99999999999999999999999886654 6789999999999999999999999999997765 56899
Q ss_pred ccccchhhhcccHHHHHHHHHhccccCC
Q psy8682 1870 PHGLEPRAVKEMSDSIWYSLRGFHPPFG 1897 (1956)
Q Consensus 1870 ~LG~l~~~lg~~seAIws~Lr~Al~l~g 1897 (1956)
.+|.++...|++.+++ .++..++.+..
T Consensus 312 ~la~~~~~~g~~~~A~-~~~~~al~~~~ 338 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAM-HFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHTCHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHH-HHHHHHHHHHH
Confidence 9999999999998887 77777766643
No 30
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.87 E-value=5.2e-21 Score=212.01 Aligned_cols=197 Identities=18% Similarity=0.179 Sum_probs=161.8
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy 1655 (1956)
.-.++|++|+.. |+++++.+|.++ .+++.+|.++...|++++|+..|+++++++|+++.++..+|.++...+..
T Consensus 16 ~~~g~~~~A~~~--~~~al~~~p~~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 89 (217)
T 2pl2_A 16 YALGRYDAALTL--FERALKENPQDP----EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQ 89 (217)
T ss_dssp HHTTCHHHHHHH--HHHHHTTSSSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHH--HHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhh
Confidence 345688999998 999998877655 49999999999999999999999999999999999999999999876211
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
... .+...|++++|+..+++++++ +|+ ...++..+|.+
T Consensus 90 -------------~~~----------~~~~~g~~~~A~~~~~~al~~----~P~---------------~~~~~~~lg~~ 127 (217)
T 2pl2_A 90 -------------AED----------RERGKGYLEQALSVLKDAERV----NPR---------------YAPLHLQRGLV 127 (217)
T ss_dssp -------------CSS----------HHHHHHHHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHH
T ss_pred -------------hhh----------hcccccCHHHHHHHHHHHHHh----Ccc---------------cHHHHHHHHHH
Confidence 011 233568899999999999999 776 45567899999
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+...|++++|+..|+++++++ ++ +.++..+|.++..+|++++|+..|+++++++|+++.++..+|.++...|++++
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~-~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~ 203 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE-DT---PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEE 203 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------
T ss_pred HHHcCChHHHHHHHHHHHhcc-cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence 999999999999999999999 77 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy8682 1816 AVEAYHTAL 1824 (1956)
Q Consensus 1816 Aie~yeKAL 1824 (1956)
|+..|+++-
T Consensus 204 A~~~~~~~~ 212 (217)
T 2pl2_A 204 AARAAALEH 212 (217)
T ss_dssp ---------
T ss_pred HHHHHHHHh
Confidence 999998864
No 31
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.87 E-value=1.1e-21 Score=238.48 Aligned_cols=226 Identities=12% Similarity=0.056 Sum_probs=214.3
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCC
Q psy8682 1631 AAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEAC-LHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1631 ALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd-ydEALe~leKALelg~e~dPd 1709 (1956)
++..+|++..++..+|.++...|++++|+..|+++++++|++..+|+.+|.++..+|+ +++|+..|++++.+ +|+
T Consensus 89 ai~~~p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~ 164 (382)
T 2h6f_A 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPK 164 (382)
T ss_dssp EECCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTT
T ss_pred hhhCChhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCC
Confidence 4567888999999999999999999999999999999999999999999999999997 99999999999999 777
Q ss_pred chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1710 PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1710 ~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...+++++|.++..+|++++|+..|+++++++|++ ..+|+++|.++..+|++++|+.+|+++
T Consensus 165 ---------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~---~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 165 ---------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKN---YHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp ---------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccC---HHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45678999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHH-CCChHHH-----HHHHHHHHhhCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhc
Q psy8682 1790 LQVRPDDSRLWNRLGASLAN-GNRPEEA-----VEAYHTALQLSPGFVRARYNLGITCVHLG--ANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~q-lGryeEA-----ie~yeKALeL~PdnaeA~~~LA~ay~klG--dyEEAie~yekALeLd 1861 (1956)
++++|++..+|+++|.++.. .|.+++| +.+|+++++++|++..+|+++|.++...| ++++|++.++++ +.+
T Consensus 227 l~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~ 305 (382)
T 2h6f_A 227 LKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS 305 (382)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT
T ss_pred HHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC
Confidence 99999999999999999999 5665888 59999999999999999999999999988 699999999998 999
Q ss_pred CCChhchhccccchhhhc
Q psy8682 1862 AATHDGLTPHGLEPRAVK 1879 (1956)
Q Consensus 1862 Pdn~dA~~~LG~l~~~lg 1879 (1956)
|+++.++..+|.++..++
T Consensus 306 p~~~~al~~La~~~~~~~ 323 (382)
T 2h6f_A 306 HSSPYLIAFLVDIYEDML 323 (382)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999998875
No 32
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.87 E-value=2.3e-21 Score=251.08 Aligned_cols=252 Identities=10% Similarity=0.069 Sum_probs=210.2
Q ss_pred cccccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHH-HHHHHHH
Q psy8682 681 AHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV-DCFRSAL 759 (1956)
Q Consensus 681 ~~k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkAr-elFerAL 759 (1956)
-++...+|..|++.++.. ..........+++..+|++|+..+|. ++++|+.++.++...|+.+.|+ ++|++|+
T Consensus 298 ~~~ql~lW~~yi~fEk~~---~~~l~~~~~~~Rv~~~Ye~aL~~~p~---~~~lW~~ya~~~~~~~~~~~a~r~il~rAi 371 (679)
T 4e6h_A 298 DVQQLLIWLEWIRWESDN---KLELSDDLHKARMTYVYMQAAQHVCF---APEIWFNMANYQGEKNTDSTVITKYLKLGQ 371 (679)
T ss_dssp CHHHHHHHHHHHHHHHTC---TTCCCHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHHSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhC---CccccchhhHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 355689999999998841 11111112456788999999999998 8999999999999999999996 9999999
Q ss_pred hhCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhc-----------CC-----------CHHHHH
Q psy8682 760 QVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKN-----------RM-----------VISNWI 817 (1956)
Q Consensus 760 kkfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~-----------~~-----------s~~lWl 817 (1956)
..+|.+..+|+.|+.+.. ..++ .++||.+|++++... |. ...+|+
T Consensus 372 ~~~P~s~~Lwl~~a~~ee------~~~~-------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi 438 (679)
T 4e6h_A 372 QCIPNSAVLAFSLSEQYE------LNTK-------IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYC 438 (679)
T ss_dssp HHCTTCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHH------HhCC-------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHH
Confidence 999999999999997765 2233 456777788777642 22 245899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 818 KYAQWEESQKQVDRARSIYERALDV-DHRNITLWLKYTELEMRNRQ-VNHARNLWDRAVTILPRANQFWYKYTYMEEMLE 895 (1956)
Q Consensus 818 kYAqfE~~~Gd~ErARsIfERALs~-~Pk~~dLWl~YadfE~k~gn-ierARsLFERAL~~~Pks~~LW~kYidfE~k~G 895 (1956)
.|+++|.+.|+.++||.||++|+.. .+....+|+.++.+|.+.++ +++||.||+++++.+|+...+|..|++||...|
T Consensus 439 ~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~ 518 (679)
T 4e6h_A 439 VYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVN 518 (679)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCC
Confidence 9999999999999999999999987 55668999999999999865 999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhc---c---CchHHHHHHHHhhcccccchHHHHHHHHHHHhccccCccceeee
Q psy8682 896 NVAGKLFVFHRDS---I---SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECCCGQVVSTV 953 (1956)
Q Consensus 896 d~e~aR~VfERAL---~---~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~~g~~~~~~ 953 (1956)
+.++||.+|+||+ + ....+|..|++||.+++ +.....+..+|.++.||-.+-++..
T Consensus 519 ~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G--~~~~~~~v~~R~~~~~P~~~~~~~f 580 (679)
T 4e6h_A 519 EESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVG--SLNSVRTLEKRFFEKFPEVNKLEEF 580 (679)
T ss_dssp CHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTC--CSHHHHHHHHHHHHHSTTCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 9999999999999 3 35689999999999965 5677888899999999865444433
No 33
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=2.6e-21 Score=229.29 Aligned_cols=281 Identities=13% Similarity=0.112 Sum_probs=245.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA----EVWLSLGISLAENEQDPQAIAALSKCLSI------EPKNL 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdna----eAl~~LA~ay~~lGdyeEALe~yeKALeL------dPdna 1673 (1956)
.+..++.+|..++..|++++|+.+|+++++..|++. .++..+|.+|...|++++|+.+|++++++ .|...
T Consensus 47 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 47 MCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 567888999999999999999999999999999986 58999999999999999999999999998 46677
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC------------
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI------------ 1741 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd------------ 1741 (1956)
.++..+|.+|...|++++|+.++++++.. ..... ..+....++..+|.++...|+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~ 193 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTL----------ARQLG---DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGD 193 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHT---CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHhh---chHHHHHHHHHHHHHHHHcCcccccccchhhhh
Confidence 88999999999999999999999999988 33322 124567788999999999999
Q ss_pred -----HHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHH
Q psy8682 1742 -----HQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS------RLWNRLGASL 1807 (1956)
Q Consensus 1742 -----yeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna------eA~~nLG~ay 1807 (1956)
+++|+.++++++++.+.. .....++..+|.+|...|++++|+.+|++++++.+... .++..+|.+|
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 273 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSH 273 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 999999999998864321 11256899999999999999999999999999876432 3899999999
Q ss_pred HHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------hhchhccccch
Q psy8682 1808 ANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT------HDGLTPHGLEP 1875 (1956)
Q Consensus 1808 ~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn------~dA~~~LG~l~ 1875 (1956)
..+|++++|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++.+.+.. ..++..+|.++
T Consensus 274 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 274 IFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAH 353 (411)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHH
Confidence 99999999999999999986643 6789999999999999999999999999987654 34899999999
Q ss_pred hhhcccHHHHHHHHHhccccCCC
Q psy8682 1876 RAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1876 ~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
...|++.+++ .+++.++.+...
T Consensus 354 ~~~g~~~~A~-~~~~~al~~~~~ 375 (411)
T 4a1s_A 354 SAIGGHERAL-KYAEQHLQLAXX 375 (411)
T ss_dssp HHTTCHHHHH-HHHHHHHHHCCH
T ss_pred HHhccHHHHH-HHHHHHHHHHhh
Confidence 9999998887 888888777765
No 34
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.86 E-value=3.3e-21 Score=217.40 Aligned_cols=281 Identities=15% Similarity=0.125 Sum_probs=238.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSI------EPKNL 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn----aeAl~~LA~ay~~lGdyeEALe~yeKALeL------dPdna 1673 (1956)
....++..|..++..|++++|+.+|+++++..|++ ..++..+|.++...|++++|+.++++++++ .+...
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 83 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 83 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHH
Confidence 34578889999999999999999999999999998 468889999999999999999999999887 34456
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC------------
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI------------ 1741 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd------------ 1741 (1956)
.++..+|.+|...|++++|+.+++++++. ...... ......++..+|.++...|+
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 150 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDI----------SRELND---KVGEARALYNLGNVYHAKGKSFGCPGPQDTGE 150 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHHHHTSSSSSCC----
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH----------HHHhcC---chHHHHHHHHHHHHHHHcCcccccchhhhhhh
Confidence 78999999999999999999999999988 222210 13456688899999999999
Q ss_pred --------HHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy8682 1742 --------HQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------SRLWNRLG 1804 (1956)
Q Consensus 1742 --------yeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------aeA~~nLG 1804 (1956)
+++|+.++++++...+.. .....++..+|.++...|++++|+.++++++.+.+.. ..++..+|
T Consensus 151 ~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~ 230 (338)
T 3ro2_A 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG 230 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 999999999998763221 1125688999999999999999999999999875432 34899999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC------hhchhccc
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT------HDGLTPHG 1872 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn------~dA~~~LG 1872 (1956)
.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+|++++.+.+.. ..++..+|
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la 310 (338)
T 3ro2_A 231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG 310 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 99999999999999999999876554 6789999999999999999999999999987764 34888999
Q ss_pred cchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1873 LEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1873 ~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
.++...|++.+++ .++++++.+..+
T Consensus 311 ~~~~~~g~~~~A~-~~~~~a~~~~~~ 335 (338)
T 3ro2_A 311 NAYTALGNHDQAM-HFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHTCHHHHH-HHHHHHHHC---
T ss_pred HHHHHcCChHHHH-HHHHHHHHHHHh
Confidence 9999999998887 778887776544
No 35
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.9e-20 Score=204.49 Aligned_cols=216 Identities=14% Similarity=0.168 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+|.++
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVY 101 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 56688888888888888888888888888888888888888888888888888888888888888888888888888877
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|++++|+.+++++++. .|. ....+..+|.++...|++++|+.+++++++..|.+ .
T Consensus 102 ~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 159 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA----GME---------------NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND---T 159 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH----TCC---------------SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC---H
T ss_pred HHhccHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc---H
Confidence 7777777777777777776 444 12234445555555555555555555555555554 5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
.++..+|.++...|++++|+..|++++...|++..++..+|.++...|++++|+.+|+++++++|++..++..++.+.
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~ 237 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLG 237 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555555555555554444443
No 36
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.86 E-value=1.9e-20 Score=204.58 Aligned_cols=220 Identities=16% Similarity=0.153 Sum_probs=187.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
.+.+++.+|.++...|++++|+..|+++++.+|++..++..+|.++...|++++|+.+++++++. .|.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~-------- 89 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALEL----DSS-------- 89 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCc--------
Confidence 35678999999999999999999999999999999999999999999999999999999999998 555
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
...++..+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..++++++..|.+.
T Consensus 90 -------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 159 (243)
T 2q7f_A 90 -------AATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMEN---GDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT 159 (243)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCS---HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH
T ss_pred -------chHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH
Confidence 34567889999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
.++..+|.++...|++++|+..|+++++..|++..++..+|.++...|++++|+.+|+++++++|+++.++..++.+...
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~ 239 (243)
T 2q7f_A 160 EARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHH 239 (243)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988876544
Q ss_pred hc
Q psy8682 1878 VK 1879 (1956)
Q Consensus 1878 lg 1879 (1956)
.+
T Consensus 240 ~~ 241 (243)
T 2q7f_A 240 HH 241 (243)
T ss_dssp --
T ss_pred cc
Confidence 33
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.86 E-value=9.6e-20 Score=199.85 Aligned_cols=231 Identities=12% Similarity=0.076 Sum_probs=212.4
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-------HHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-------AEVWLSL 1645 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdn-------aeAl~~L 1645 (1956)
..+...++|++|+.. |++++... .+ +.+++.+|.++...|++++|+.+|+++++.+|.+ +.++..+
T Consensus 13 ~~~~~~~~~~~A~~~--~~~a~~~~-~~----~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 13 NKFYKARQFDEAIEH--YNKAWELH-KD----ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHS-CC----THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH--HHHHHHhh-cc----HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 455667899999998 99999887 44 4599999999999999999999999999998876 7899999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1646 GISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1646 A~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
|.++...|++++|+..|++++++.|. +.++...|++++|+..+++++.. +| ..
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~~~~~~a~~~~~~~~~~----~~---------------~~ 138 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTEHRT--------ADILTKLRNAEKELKKAEAEAYV----NP---------------EK 138 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHHHHHC----CH---------------HH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCch--------hHHHHHHhHHHHHHHHHHHHHHc----Cc---------------ch
Confidence 99999999999999999999999987 45677888899999999999988 43 35
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
..++..+|.++...|++++|+.+|+++++..|.+ +.++..+|.++...|++++|+.+|+++++..|+++.++..+|.
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~ 215 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKAT 215 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 6678899999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGIT 1840 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~------PdnaeA~~~LA~a 1840 (1956)
++..+|++++|+.+|++++++. |++..++..++.+
T Consensus 216 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 216 AQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 9999999999999999999999 8888888877765
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.86 E-value=1.5e-20 Score=209.75 Aligned_cols=242 Identities=11% Similarity=0.082 Sum_probs=218.2
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
+++.++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+..+++++.. ..++.
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------- 71 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--VNATK-------- 71 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT--SCTTT--------
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--cCchh--------
Confidence 35678899999999999999999999999999999999999999999999999999999999986 11222
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
....++..+|.++...|++++|+.+|+++++.+|.+ ..++..+|.+|...|++++|+.+|+++++.+|.++
T Consensus 72 ------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 142 (272)
T 3u4t_A 72 ------AKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR---LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP 142 (272)
T ss_dssp ------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH
T ss_pred ------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH
Confidence 235567899999999999999999999999999998 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhc---CCC-----hh
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA---NTQAVEHFLTALNQQ---AAT-----HD 1866 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd---yEEAie~yekALeLd---Pdn-----~d 1866 (1956)
.++..+|......+++++|+..|+++++..|++..++..+|.++..+|+ +++|+.+|++++++. |+. ..
T Consensus 143 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 222 (272)
T 3u4t_A 143 KVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE 222 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHH
Confidence 9999999555556699999999999999999999999999999999999 999999999999987 442 25
Q ss_pred chhccccchhhhcccHHHHHHHHHhccccCCCC
Q psy8682 1867 GLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1867 A~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~ 1899 (1956)
++..+|.++...|++.+++ .++++++.+.+..
T Consensus 223 ~~~~l~~~~~~~~~~~~A~-~~~~~al~~~p~~ 254 (272)
T 3u4t_A 223 ANEYIAYYYTINRDKVKAD-AAWKNILALDPTN 254 (272)
T ss_dssp HHHHHHHHHHHTTCHHHHH-HHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHcCCHHHHH-HHHHHHHhcCccH
Confidence 8889999999999998888 8889888887775
No 39
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.86 E-value=5.7e-20 Score=213.98 Aligned_cols=260 Identities=13% Similarity=0.048 Sum_probs=222.4
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..+.+.|+.++.. .++.. ..+|....+..+.++++|...|++++|+..++. .+|....++..++..+...++
T Consensus 9 ~~~~g~y~~ai~~--~~~~~---~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~ 80 (291)
T 3mkr_A 9 AFYIGSYQQCINE--AQRVK---PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSR 80 (291)
T ss_dssp HHHTTCHHHHHHH--HHHSC---CCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTT
T ss_pred HHHHHHHHHHHHH--HHhcc---cCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCc
Confidence 3567888888887 33333 334442356778889999999999999998866 256567788999999999999
Q ss_pred hHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSI--EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALeL--dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+++|++.+++++.. +|+++.+++.+|.++...|++++|+..+++ |. ...++..+
T Consensus 81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~---------~~---------------~~~~~~~l 136 (291)
T 3mkr_A 81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ---------GD---------------SLECMAMT 136 (291)
T ss_dssp HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT---------CC---------------SHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC---------CC---------------CHHHHHHH
Confidence 99999999999976 599999999999999999999999999876 12 33467889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG--VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG--~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
|.++...|++++|+..|+++++.+|++ .......+ .++...|++++|+..|+++++..|+++.+++++|.++..+
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~p~~---~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~ 213 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQDEDA---TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQ 213 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999987 43333323 3344558999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhcCCChhchh
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ-AVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEE-Aie~yekALeLdPdn~dA~~ 1869 (1956)
|++++|+..|+++++.+|+++.++.++|.++..+|+..+ |..+++++++++|+++.+..
T Consensus 214 g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d 273 (291)
T 3mkr_A 214 GRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE 273 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence 999999999999999999999999999999999999976 57899999999999998654
No 40
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.86 E-value=8.9e-21 Score=224.73 Aligned_cols=276 Identities=13% Similarity=0.089 Sum_probs=240.2
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLG 1646 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA 1646 (1956)
..+...++|++|+.. |++++++.+.++...+.+++.+|.++...|++++|+.+|+++++. .|....++..+|
T Consensus 56 ~~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAF--FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHH--HHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 355667899999999 999999887776545678999999999999999999999999987 466778999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSI------EPKNLEALMAISICFTNEAC-----------------LHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeL------dPdnaeAl~~LA~aY~~lGd-----------------ydEALe~leKALelg 1703 (1956)
.+|...|++++|+.+|++++++ .+....++..+|.+|...|+ +++|+.++++++++
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~- 212 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL- 212 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH-
Confidence 9999999999999999999998 45667789999999999999 99999999999887
Q ss_pred CCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHH
Q psy8682 1704 QESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYD 1780 (1956)
Q Consensus 1704 ~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdye 1780 (1956)
..... ..+....++..+|.++...|++++|+.++++++++.+.. .....++..+|.+|..+|+++
T Consensus 213 ---------~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 280 (411)
T 4a1s_A 213 ---------MRDLG---DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280 (411)
T ss_dssp ---------HHHHT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHH
T ss_pred ---------HHHcC---CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHH
Confidence 33222 124566788999999999999999999999999987654 011348899999999999999
Q ss_pred HHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHH
Q psy8682 1781 KAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANT 1848 (1956)
Q Consensus 1781 EAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyE 1848 (1956)
+|+.+|++++.+.+.. ..++..+|.++..+|++++|+.+|++++.+.+. ...++..+|.+|..+|+++
T Consensus 281 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 360 (411)
T 4a1s_A 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHE 360 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHH
Confidence 9999999999987644 678999999999999999999999999987543 3568999999999999999
Q ss_pred HHHHHHHHHHHhcCC
Q psy8682 1849 QAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1849 EAie~yekALeLdPd 1863 (1956)
+|+.+|++++++.+.
T Consensus 361 ~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 361 RALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999999876
No 41
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.85 E-value=6.3e-21 Score=215.08 Aligned_cols=277 Identities=14% Similarity=0.090 Sum_probs=234.3
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHH
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLG 1646 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel------dPdnaeAl~~LA 1646 (1956)
......++|++|+.. |++++...|.++...+..+..+|.++...|++++|+.++++++.. .+..+.++..+|
T Consensus 13 ~~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKSGDCRAGVSF--FEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHTTCHHHHHHH--HHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHH--HHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 355667899999999 999999877766545678999999999999999999999999887 344577899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEAC--------------------LHDALDTLKDKI 1700 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~LA~aY~~lGd--------------------ydEALe~leKAL 1700 (1956)
.++...|++++|+..+++++++.+.. ..++..+|.+|...|+ +++|+.++++++
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999886543 3488999999999999 999999999998
Q ss_pred hcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcC
Q psy8682 1701 RPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSD 1777 (1956)
Q Consensus 1701 elg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lG 1777 (1956)
.. ..... ..+....++..+|.++...|++++|+.+++++++..+.. .....++..+|.++...|
T Consensus 171 ~~----------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g 237 (338)
T 3ro2_A 171 SL----------VTALG---DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLG 237 (338)
T ss_dssp HH----------HHHHT---CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HH----------HHhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcC
Confidence 87 32222 123556788999999999999999999999999876543 112348899999999999
Q ss_pred CHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHHHHcC
Q psy8682 1778 EYDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITCVHLG 1845 (1956)
Q Consensus 1778 dyeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay~klG 1845 (1956)
++++|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++++.+.. ..++..+|.++..+|
T Consensus 238 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g 317 (338)
T 3ro2_A 238 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALG 317 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcC
Confidence 9999999999999886654 6789999999999999999999999999875432 558899999999999
Q ss_pred CHHHHHHHHHHHHHhcCCC
Q psy8682 1846 ANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn 1864 (1956)
++++|..+|++++++.+..
T Consensus 318 ~~~~A~~~~~~a~~~~~~~ 336 (338)
T 3ro2_A 318 NHDQAMHFAEKHLEISREV 336 (338)
T ss_dssp CHHHHHHHHHHHHHC----
T ss_pred ChHHHHHHHHHHHHHHHhh
Confidence 9999999999999998763
No 42
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.85 E-value=7.1e-18 Score=218.55 Aligned_cols=228 Identities=11% Similarity=0.074 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHHHcCChHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAI-LYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAI-e~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+.|+..|..+...|+.++|. ..|++|+...|.+...|..++......|++++|...|+++++.-+..... +-
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~------~~ 416 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAA------LM 416 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhh------hh
Confidence 346777777777777776775 77777777777766666677777777777777777766666532110000 00
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCCCC
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-CPSQSID 1762 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-~P~n~~~ 1762 (1956)
.. .|... ..+. ........+|...+......|..+.|..+|.+|++. .+..
T Consensus 417 -----------------~~----~p~~~--~~~~--~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~--- 468 (679)
T 4e6h_A 417 -----------------ED----DPTNE--SAIN--QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT--- 468 (679)
T ss_dssp -----------------HH----STTCH--HHHH--HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC---
T ss_pred -----------------hc----cCcch--hhhh--hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC---
Confidence 00 01100 0000 000123445777778888889999999999999987 3333
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---CcHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSD-EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP---GFVRARYNLG 1838 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lG-dyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P---dnaeA~~~LA 1838 (1956)
..+|...|.+....+ +++.|...|+.+++..|+++..|...+......|+.+.|...|++|+...| .....|....
T Consensus 469 ~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~ 548 (679)
T 4e6h_A 469 PDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI 548 (679)
T ss_dssp THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 567777777776665 499999999999999999999999999999999999999999999999887 3567888888
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
..-...|+.+.+...++++++..|+++.
T Consensus 549 ~fE~~~G~~~~~~~v~~R~~~~~P~~~~ 576 (679)
T 4e6h_A 549 FFESKVGSLNSVRTLEKRFFEKFPEVNK 576 (679)
T ss_dssp HHHHHTCCSHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCcH
Confidence 8899999999999999999999999764
No 43
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.85 E-value=3.4e-19 Score=201.25 Aligned_cols=234 Identities=16% Similarity=0.198 Sum_probs=215.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE----NEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~----lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
++.+++.+|..+...|++++|+.+|+++++ |+++.+++.+|.+|.. .+++++|+.+|+++++.. ++.+++.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l 80 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL 80 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence 567999999999999999999999999998 7889999999999999 999999999999999985 78999999
Q ss_pred HHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q psy8682 1680 SICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLN 1751 (1956)
Q Consensus 1680 A~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~Lek 1751 (1956)
|.+|.. .+++++|+.+|+++++. ....++..+|.+|.. .+++++|+.+|++
T Consensus 81 g~~~~~g~~~~~~~~~A~~~~~~a~~~---------------------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~ 139 (273)
T 1ouv_A 81 GNLYYSGQGVSQNTNKALQYYSKACDL---------------------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK 139 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHH
T ss_pred HHHHhCCCCcccCHHHHHHHHHHHHHc---------------------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 999999 99999999999999987 134578899999999 9999999999999
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKA 1823 (1956)
+++.. + ..++..+|.+|.. .+++++|+.+|+++++. .++.++..+|.+|.. .+++++|+.+|+++
T Consensus 140 a~~~~--~---~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 212 (273)
T 1ouv_A 140 ACDLN--D---GDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYSKA 212 (273)
T ss_dssp HHHTT--C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred HHhcC--c---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHH
Confidence 99975 4 6799999999999 99999999999999987 468999999999999 99999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1824 LQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1824 LeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++..| ..+++.+|.+|.. .+++++|+.+|++++++.|+++..+...
T Consensus 213 ~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~ 262 (273)
T 1ouv_A 213 CELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDILKQ 262 (273)
T ss_dssp HHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99866 8899999999999 9999999999999999998866544443
No 44
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.84 E-value=8.1e-20 Score=212.71 Aligned_cols=261 Identities=9% Similarity=0.013 Sum_probs=229.6
Q ss_pred HHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Q psy8682 1612 GQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH 1690 (1956)
Q Consensus 1612 G~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd 1690 (1956)
...++..|+|.+|+..++++...+|++ .++...++.+|...|++++|+..++. .+|....++..++..+...++++
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 345678999999999999988877776 46788899999999999999998866 25666778889999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHH
Q psy8682 1691 DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG 1770 (1956)
Q Consensus 1691 EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG 1770 (1956)
+|++.+++++.. ..+|+ ....++.+|.++...|++++|+..+++ |.+ ..++..+|
T Consensus 83 ~A~~~l~~ll~~--~~~P~---------------~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~---~~~~~~l~ 137 (291)
T 3mkr_A 83 AIVAELDREMSR--SVDVT---------------NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDS---LECMAMTV 137 (291)
T ss_dssp HHHHHHHHHHHS--CCCCS---------------CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCS---HHHHHHHH
T ss_pred HHHHHHHHHHhc--ccCCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCC---HHHHHHHH
Confidence 999999999876 01344 455678899999999999999999998 777 89999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHH
Q psy8682 1771 VLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG--ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848 (1956)
Q Consensus 1771 ~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG--~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyE 1848 (1956)
.++..+|++++|+..|+++++.+|++.......+ .++...|++++|+..|+++++..|+++.+++++|.++..+|+++
T Consensus 138 ~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~ 217 (291)
T 3mkr_A 138 QILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWE 217 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999999999999875544433 34445699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCCCc
Q psy8682 1849 QAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL 1900 (1956)
Q Consensus 1849 EAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr~~ 1900 (1956)
+|+.+|++++.++|++++++.++|.++...|+..+++..++++++...+.+.
T Consensus 218 eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 218 AAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 9999999999999999999999999999999998888788999888888763
No 45
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.84 E-value=9.4e-20 Score=202.76 Aligned_cols=248 Identities=13% Similarity=-0.010 Sum_probs=202.3
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
.++|++|+.. |++++...+.++...+.+++.+|.++...|++++|+.+|+++++.+|+++.++..+|.++...|++++
T Consensus 18 ~~~~~~A~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILAR--MEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHH--HHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHH--HHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 4688888888 88888765444434678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~ 1737 (1956)
|+.+|+++++++|++..++..+|.+|...|++++|+.+++++++. .|+ .. .... ....+.
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~----~~~---~~------------~~~~-~~~~~~ 155 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD----DPN---DP------------FRSL-WLYLAE 155 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---CH------------HHHH-HHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCC---Ch------------HHHH-HHHHHH
Confidence 999999999999999999999999999999999999999999998 676 11 1111 222335
Q ss_pred hcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHCCCh
Q psy8682 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD----DSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd----naeA~~nLG~ay~qlGry 1813 (1956)
..|++++|+..+.+++...|.+ ... ..++.++...++.++|+..+++++...|. ++.++..+|.++...|++
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 156 QKLDEKQAKEVLKQHFEKSDKE---QWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp HHHCHHHHHHHHHHHHHHSCCC---STH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HhcCHHHHHHHHHHHHhcCCcc---hHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 6689999999999999988876 333 34677778888899999999998877664 368888999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~y 1854 (1956)
++|+.+|++++..+|++... .+.++..+|++++|+..|
T Consensus 232 ~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 232 DSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 99999999999998876443 377888888899988877
No 46
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.84 E-value=9e-20 Score=211.92 Aligned_cols=243 Identities=11% Similarity=0.148 Sum_probs=209.6
Q ss_pred ccccchhhHHHhhhcccccccCCCCch-hHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhh-------cccH-----
Q psy8682 682 HKADALPSKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL-------SDEY----- 748 (1956)
Q Consensus 682 ~k~~~l~~~~~~l~~~~l~~en~~~~~-~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~-------sgey----- 748 (1956)
+++.++|..|++.+.+. ....+.. ...+++..+|.+|++.+|. ++++|..+|.++.. .|++
T Consensus 5 ~~~~~~W~~yi~~E~~~---~~~~~~~~~~~~~a~~~~~~al~~~p~---~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~ 78 (308)
T 2ond_A 5 AQQVDMWKKYIQWEKSN---PLRTEDQTLITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKL 78 (308)
T ss_dssp HHHHHHHHHHHHHHHTC---TTCCCCHHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHhC---cccCCchHHHHHHHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhchhhhhccchhhccc
Confidence 46789999999998752 1111111 1227888999999999998 89999999999874 4775
Q ss_pred --HHHHHHHHHHHh-hCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCHH-HHHHHHHHHH
Q psy8682 749 --DKAVDCFRSALQ-VRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVIS-NWIKYAQWEE 824 (1956)
Q Consensus 749 --EkArelFerALk-kfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~~-lWlkYAqfE~ 824 (1956)
++|+++|++|++ ..|++..+|..|+.++. ..++ ..+|+.+|++++...|.+.. +|..|+.++.
T Consensus 79 ~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~------~~~~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 145 (308)
T 2ond_A 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEE------SRMK-------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR 145 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCcccHHHHHHHHHHHH------hcCC-------HHHHHHHHHHHHhccccCccHHHHHHHHHHH
Confidence 899999999999 68999999999998766 2233 45788999999998777776 9999999999
Q ss_pred HcCCHHHHHHHHHHhhcccCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 825 SQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-NRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFV 903 (1956)
Q Consensus 825 ~~Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~k-~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~V 903 (1956)
+.|++++|+.+|++|+...|....+|..++.+|.. .|+++.|+.+|+++++..|+...+|..|++++.+.|+.++|+.+
T Consensus 146 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~ 225 (308)
T 2ond_A 146 RAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225 (308)
T ss_dssp HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999999876 69999999999999999999999999999999999999999999
Q ss_pred HHhhcc-------CchHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 904 FHRDSI-------SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 904 fERAL~-------~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
|+||+. ....+|..|+.|+.+. ++......++.++++.+|
T Consensus 226 ~~~al~~~~l~p~~~~~l~~~~~~~~~~~--g~~~~a~~~~~~a~~~~p 272 (308)
T 2ond_A 226 FERVLTSGSLPPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFR 272 (308)
T ss_dssp HHHHHHSSSSCGGGCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHcc
Confidence 999983 2567999999999884 467888899999999888
No 47
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.84 E-value=7.8e-19 Score=194.07 Aligned_cols=214 Identities=15% Similarity=0.095 Sum_probs=170.9
Q ss_pred CCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1600 NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
+|...+..++.+|..+...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++.+|.+..++..+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l 111 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNY 111 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHH
Confidence 44424778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1680 SICFTNEACLHDALDTLKDKIR--PGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALe--lg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
|.+|...|++++|+.++++++. . .|. ...++..+|.++...|++++|+.+++++++..|
T Consensus 112 a~~~~~~g~~~~A~~~~~~~~~~~~----~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~ 172 (252)
T 2ho1_A 112 GGFLYEQKRYEEAYQRLLEASQDTL----YPE---------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHTTCTT----CTT---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHhHHHHHHHHHHHHHhCcc----Ccc---------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc
Confidence 9999999999999999999887 4 333 344556677777777777777777777777777
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
.+ ..++..+|.++...|++++|+..++++++..|.+..++..++.++...|++++|..+++++++..|++..+..
T Consensus 173 ~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 247 (252)
T 2ho1_A 173 NQ---PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQE 247 (252)
T ss_dssp CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHH
T ss_pred cc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 66 6677777777777777777777777777777777777777777777777777777777777777776665543
No 48
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=6.7e-19 Score=189.13 Aligned_cols=210 Identities=14% Similarity=0.100 Sum_probs=122.1
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
++..++.+|..+...|++++|+.+|+++++.+|++..++..+|.++...|++++|+.+|+++++..|++..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 55566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHc-CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC
Q psy8682 1684 TNE-ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762 (1956)
Q Consensus 1684 ~~l-GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~ 1762 (1956)
... |++++|+.+++++++. | ..|..
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-----~----------------------------------------------~~~~~--- 112 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-----P----------------------------------------------TYPTP--- 112 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-----T----------------------------------------------TCSCH---
T ss_pred HHhcCcHHHHHHHHHHHHcC-----c----------------------------------------------CCcch---
Confidence 666 6666666666666551 0 11222
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC-CcHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP-GFVRARYNLGITC 1841 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P-dnaeA~~~LA~ay 1841 (1956)
..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+..++++++..| .+..++..++.++
T Consensus 113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T 2vq2_A 113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA 192 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555555555555555555555555 5555555555555
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
...|++++|..+++.++...|+++.+
T Consensus 193 ~~~~~~~~a~~~~~~~~~~~p~~~~~ 218 (225)
T 2vq2_A 193 KALGNAQAAYEYEAQLQANFPYSEEL 218 (225)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhcCcHHHHHHHHHHHHHhCCCCHHH
Confidence 55555555555555555555555443
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.83 E-value=3.5e-19 Score=196.82 Aligned_cols=215 Identities=16% Similarity=0.142 Sum_probs=201.5
Q ss_pred hCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchh
Q psy8682 1634 QEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712 (1956)
Q Consensus 1634 ldPdn-aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~ea 1712 (1956)
.+|.+ +.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++|+.+++++++. +|.
T Consensus 31 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~--- 103 (252)
T 2ho1_A 31 KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSR--- 103 (252)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT---
T ss_pred cchHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcC---
Confidence 45554 7889999999999999999999999999999999999999999999999999999999999998 665
Q ss_pred hhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR--QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1713 y~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe--l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
....+..+|.++...|++++|+.+++++++ ..|.. ..++..+|.++...|++++|+.+|++++
T Consensus 104 ------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~~ 168 (252)
T 2ho1_A 104 ------------NARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPER---SRVFENLGLVSLQMKKPAQAKEYFEKSL 168 (252)
T ss_dssp ------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTH---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ------------cHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999 66766 8899999999999999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1791 el~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
+..|.+..++..+|.++...|++++|+.+|+++++..|.+..++..++.++...|++++|..++++++++.|+++.++..
T Consensus 169 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~ 248 (252)
T 2ho1_A 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF 248 (252)
T ss_dssp HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred hcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998876543
No 50
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.83 E-value=2.2e-18 Score=185.13 Aligned_cols=199 Identities=14% Similarity=0.026 Sum_probs=159.7
Q ss_pred hhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CC
Q psy8682 1576 QWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN-EQ 1654 (1956)
Q Consensus 1576 ~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l-Gd 1654 (1956)
...+++++|+.. +++++...|.+ ...++.+|.++...|++++|+.+|++++..+|.+..++..+|.++... |+
T Consensus 19 ~~~~~~~~A~~~--~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 92 (225)
T 2vq2_A 19 MRGQDYRQATAS--IEDALKSDPKN----ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNR 92 (225)
T ss_dssp HHTTCHHHHHHH--HHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHhhHHHHHHH--HHHHHHhCccc----hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCc
Confidence 345688899988 89988876654 559999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1655 DPQAIAALSKCLS--IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1655 yeEALe~yeKALe--LdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
+++|+..|+++++ ..|....++..+|.++...|++++|+.+++++++. .|. ....+..+
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~l 153 (225)
T 2vq2_A 93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA----QPQ---------------FPPAFKEL 153 (225)
T ss_dssp HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STT---------------CHHHHHHH
T ss_pred HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------CchHHHHH
Confidence 9999999999999 66666788888888888888888888888888877 444 23455667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCP-SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P-~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
|.++...|++++|+.+++++++..| .+ ..++..++.++...|++++|..+++.++...|+++.+...
T Consensus 154 a~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 221 (225)
T 2vq2_A 154 ARTKMLAGQLGDADYYFKKYQSRVEVLQ---ADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTV 221 (225)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHCSCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 7777777777777777777777776 65 6666666666677777777777777766667766665443
No 51
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.83 E-value=9.3e-20 Score=202.78 Aligned_cols=243 Identities=13% Similarity=0.120 Sum_probs=212.3
Q ss_pred HHcCChHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQE----PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALeld----PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
...|++++|+..|+++++.. |.++.+++.+|.++...|++++|+..|+++++.+|++..++..+|.+|...|++++
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence 34578999999999999974 45678999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ 1771 (1956)
|+.+++++++. +|. ...++..+|.++...|++++|+.+|+++++..|.+ ......++.
T Consensus 96 A~~~~~~al~~----~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~---~~~~~~~~~ 153 (275)
T 1xnf_A 96 AYEAFDSVLEL----DPT---------------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND---PFRSLWLYL 153 (275)
T ss_dssp HHHHHHHHHHH----CTT---------------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHH
T ss_pred HHHHHHHHHhc----Ccc---------------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC---hHHHHHHHH
Confidence 99999999999 665 34567889999999999999999999999999998 655555554
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC----cHHHHHHHHHHHHHcCCH
Q psy8682 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG----FVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1772 ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd----naeA~~~LA~ay~klGdy 1847 (1956)
. ...|++++|+..+++++...|.+...+. ++.++...++.++|+..+++++...|. +..++..+|.++..+|++
T Consensus 154 ~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 231 (275)
T 1xnf_A 154 A-EQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDL 231 (275)
T ss_dssp H-HHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred H-HHhcCHHHHHHHHHHHHhcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCH
Confidence 4 6679999999999999999998866654 777888899999999999999987664 368999999999999999
Q ss_pred HHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1848 TQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1848 EEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++|+.+|++++.++|++... .+.++..++++.+++
T Consensus 232 ~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~ 266 (275)
T 1xnf_A 232 DSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQ 266 (275)
T ss_dssp HHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhH
Confidence 99999999999999986543 355666777777766
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.83 E-value=4.9e-19 Score=187.97 Aligned_cols=179 Identities=18% Similarity=0.253 Sum_probs=136.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
++.+|+++|.+|...|++++|+..|++++++ +|+ ...++..+|.++...|++++|+..+.+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~la~~~~~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA----DPN---------------NVETLLKLGKTYMDIGLPNDAIESLKK 64 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455666666666666666666666666666 444 234455666666666666666666677
Q ss_pred HHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH
Q psy8682 1752 AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1752 ALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna 1831 (1956)
++...|.. ..++..+|.++...++++.|+..+.+++...|.+..++..+|.++..+|++++|+..|+++++++|+++
T Consensus 65 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 65 FVVLDTTS---AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp HHHHCCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHhcCchh---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 77777777 778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1832 RARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1832 eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.+++++|.+|..+|++++|+.+|++|++++|+++ .+.+|.+
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a--~~~lali 182 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA--KYELALV 182 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH--HHCSCCS
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH--HHHHHhh
Confidence 8888888888888888888888888888888753 4566654
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.82 E-value=3.9e-19 Score=220.48 Aligned_cols=216 Identities=14% Similarity=0.088 Sum_probs=204.9
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD-PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697 (1956)
Q Consensus 1619 GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdy-eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~le 1697 (1956)
+.+++|+..++++....|.++.+++.+|.++...|++ ++|+.+|+++++++|++..+++.+|.+|...|++++|+.+|+
T Consensus 82 ~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 82 EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 4478899999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCCCCHHHHHH
Q psy8682 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR---------EIHQQVLSLYLNAARQCPSQSIDPDVQNG 1768 (1956)
Q Consensus 1698 KALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l---------GdyeEAle~LekALel~P~n~~~a~a~~~ 1768 (1956)
+++++ +|+ ..++.++|.++... |++++|+..|+++++++|++ ..+++.
T Consensus 162 ~al~~----~p~----------------~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~ 218 (474)
T 4abn_A 162 GALTH----CKN----------------KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLD---GRSWYI 218 (474)
T ss_dssp HHHTT----CCC----------------HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTC---HHHHHH
T ss_pred HHHhh----CCC----------------HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCC---HHHHHH
Confidence 99999 665 24678899999999 99999999999999999999 999999
Q ss_pred HHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1769 LGVLFNLS--------DEYDKAVDCFRSALQVRP---DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1769 LG~ly~~l--------GdyeEAie~fekALel~P---dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
+|.+|..+ |++++|+.+|+++++++| .++.+++++|.+|..+|++++|+..|+++++++|++..++..+
T Consensus 219 lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l 298 (474)
T 4abn_A 219 LGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQRE 298 (474)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 99999999 999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHH
Q psy8682 1838 GITCVHLGANTQAVEHFLTA 1857 (1956)
Q Consensus 1838 A~ay~klGdyEEAie~yekA 1857 (1956)
+.++..+|++++|+..+.+.
T Consensus 299 ~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 299 QQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999999876543
No 54
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.81 E-value=7.8e-19 Score=219.89 Aligned_cols=233 Identities=7% Similarity=0.022 Sum_probs=190.6
Q ss_pred ccchhhHHHhhhcccccccCCCCchh--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhhcccHHHHHHHHHHHHhh
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSRE--IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 761 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~--~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~sgeyEkArelFerALkk 761 (1956)
+.++|..|++++++ ++.+..+ ..+++..+|++|+...|. ++++|+.++.++...|+.++|+++|++|+..
T Consensus 171 s~~~W~~y~~~E~~-----~~~~~~~~~~~~Rv~~~ye~al~~~p~---~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 171 SVKNAARLIDLEME-----NGMKLGGRPHESRMHFIHNYILDSFYY---AEEVYFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp SHHHHHHHHHHHHT-----CTTCCCHHHHHHHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc-----CCccCcchhhHHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 44799999999862 2222211 267899999999999997 7999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHH---------hhcCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 762 RPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNI---------RKNRMVISNWIKYAQWEESQKQVDRA 832 (1956)
Q Consensus 762 fP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL---------~~~~~s~~lWlkYAqfE~~~Gd~ErA 832 (1956)
|.+..+|+.|..+.. . ++. ..+ ++++.+ ........+|+.|++|+.+.+++++|
T Consensus 243 -P~~~~l~~~y~~~~e-------~---~~~---~~~---l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~A 305 (493)
T 2uy1_A 243 -SDGMFLSLYYGLVMD-------E---EAV---YGD---LKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELF 305 (493)
T ss_dssp -CCSSHHHHHHHHHTT-------C---THH---HHH---HHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -CCcHHHHHHHHhhcc-------h---hHH---HHH---HHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999987643 1 111 111 222211 00112357899999999999999999
Q ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhccCc
Q psy8682 833 RSIYERALDVDHRNITLWLKYTELEMRNR-QVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDSISQ 911 (1956)
Q Consensus 833 RsIfERALs~~Pk~~dLWl~YadfE~k~g-nierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL~~~ 911 (1956)
|.||++| ...+....+|+.++.+|...+ ++++||.||+++++..|+..++|..|++||.+.|+.+++|.+|+|+ ..+
T Consensus 306 R~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~-~k~ 383 (493)
T 2uy1_A 306 RKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL-EKT 383 (493)
T ss_dssp HHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS-CCB
T ss_pred HHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHH
Confidence 9999999 544457789999999999887 5999999999999999999999999999999999999999999998 457
Q ss_pred hHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 912 VTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 912 ~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
..+|..|++||..++ +.+.....++++++.|.
T Consensus 384 ~~lw~~~~~fE~~~G--~~~~~r~v~~~~~~~~~ 415 (493)
T 2uy1_A 384 SRMWDSMIEYEFMVG--SMELFRELVDQKMDAIK 415 (493)
T ss_dssp HHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHhc
Confidence 899999999999964 67888888888877553
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.81 E-value=1.9e-18 Score=183.38 Aligned_cols=172 Identities=19% Similarity=0.291 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhc
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADA 1717 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll 1717 (1956)
++.+|+.+|.+|...|++++|+..|+++++++|+++.++..+|.+|...|++++|+..+.+++.. .|+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----~~~-------- 71 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL----DTT-------- 71 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCC--------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----Cch--------
Confidence 44556666666666666666666666666666666666666666666666666666666666655 443
Q ss_pred CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1718 ~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna 1797 (1956)
...++..+|.++...++++.|...+.+++...|.+ ..++..+|.+|..+|++++|+..|+++++++|.++
T Consensus 72 -------~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~ 141 (184)
T 3vtx_A 72 -------SAEAYYILGSANFMIDEKQAAIDALQRAIALNTVY---ADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFI 141 (184)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred -------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc---hHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhh
Confidence 23344555666666666666777777777777776 77777777777777788888888887777777777
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna 1831 (1956)
.++.++|.+|..+|++++|+.+|+++++++|+++
T Consensus 142 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 142 RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence 7777888888888888888888888877777653
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=203.00 Aligned_cols=252 Identities=15% Similarity=0.129 Sum_probs=202.6
Q ss_pred hccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh
Q psy8682 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ--------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668 (1956)
Q Consensus 1597 ~p~NP~~daeall~LG~aylk~GdydEAIe~fekALel--------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL 1668 (1956)
.+++|. .+.+++.+|..+...|++++|+.+|+++++. .|....++..+|.++...|++++|+.+|+++++.
T Consensus 20 ~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 20 GYEIPA-RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp CTTSCH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 344555 7889999999999999999999999999985 5667889999999999999999999999999987
Q ss_pred --------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC
Q psy8682 1669 --------EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740 (1956)
Q Consensus 1669 --------dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG 1740 (1956)
.|....++..+|.+|...|++++|+.+++++++. +....... .+....++..+|.++...|
T Consensus 99 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~~ 167 (311)
T 3nf1_A 99 REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEI----------REKVLGKD-HPDVAKQLNNLALLCQNQG 167 (311)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HHHHHCTT-CHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH----------HHHhcCCC-ChHHHHHHHHHHHHHHHcC
Confidence 3556678999999999999999999999999988 33221111 2456778899999999999
Q ss_pred CHHHHHHHHHHHHHh--------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------C------H
Q psy8682 1741 IHQQVLSLYLNAARQ--------CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD---------D------S 1797 (1956)
Q Consensus 1741 dyeEAle~LekALel--------~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd---------n------a 1797 (1956)
++++|+.+++++++. .|.. ..++..+|.+|..+|++++|+.+|++++...+. . .
T Consensus 168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~ 244 (311)
T 3nf1_A 168 KYEEVEYYYQRALEIYQTKLGPDDPNV---AKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHA 244 (311)
T ss_dssp CHHHHHHHHHHHHHHHHHTSCTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHH
Confidence 999999999999988 4444 778999999999999999999999999976432 2 2
Q ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..+..++..+...+.+.+|+..+++++...|....++..+|.+|..+|++++|+.+|++++++.|+
T Consensus 245 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 245 EEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 344455556667788888999999999999999999999999999999999999999999999886
No 57
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.80 E-value=1.5e-17 Score=187.83 Aligned_cols=228 Identities=16% Similarity=0.155 Sum_probs=207.1
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCc
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRP 1710 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~ 1710 (1956)
+|+++.+++.+|.++...|++++|+.+|+++++ |++..+++.+|.+|.. .+++++|+.+|+++++.
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-------- 71 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-------- 71 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC--------
Confidence 478899999999999999999999999999998 7889999999999999 99999999999999988
Q ss_pred hhhhhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q psy8682 1711 SAYKADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKA 1782 (1956)
Q Consensus 1711 eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEA 1782 (1956)
....++..+|.+|.. .+++++|+.+|+++++.. + +.++..+|.+|.. .+++++|
T Consensus 72 -------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~---~~a~~~lg~~~~~~~~~~~~~~~A 133 (273)
T 1ouv_A 72 -------------NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--Y---AEGCASLGGIYHDGKVVTRDFKKA 133 (273)
T ss_dssp -------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred -------------CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--C---ccHHHHHHHHHHcCCCcccCHHHH
Confidence 134578889999999 999999999999999874 5 8899999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHF 1854 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~y 1854 (1956)
+.+|+++++.. ++.++..+|.+|.. .+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|+.+|
T Consensus 134 ~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~ 209 (273)
T 1ouv_A 134 VEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARY 209 (273)
T ss_dssp HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHH
Confidence 99999999975 78899999999999 99999999999999987 468899999999999 99999999999
Q ss_pred HHHHHhcCCChhchhccccchhh----hcccHHHHHHHHHhccccCC
Q psy8682 1855 LTALNQQAATHDGLTPHGLEPRA----VKEMSDSIWYSLRGFHPPFG 1897 (1956)
Q Consensus 1855 ekALeLdPdn~dA~~~LG~l~~~----lg~~seAIws~Lr~Al~l~g 1897 (1956)
+++++..| +.+++.+|.++.. .+++.+++ .++++++..-+
T Consensus 210 ~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~-~~~~~a~~~~~ 253 (273)
T 1ouv_A 210 SKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAI-ENFKKGCKLGA 253 (273)
T ss_dssp HHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHH-HHHHHHHHHTC
T ss_pred HHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHH-HHHHHHHHcCC
Confidence 99999866 7899999999998 88888887 77887766644
No 58
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=1.6e-17 Score=193.02 Aligned_cols=223 Identities=9% Similarity=0.021 Sum_probs=174.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------cCCh-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc
Q psy8682 1622 PSAILYLEAAAKQEPDNAEVWLSLGISLAE-------NEQD-------PQAIAALSKCLS-IEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1622 dEAIe~fekALeldPdnaeAl~~LA~ay~~-------lGdy-------eEALe~yeKALe-LdPdnaeAl~~LA~aY~~l 1686 (1956)
++|+..|++++..+|.++.+|+.+|..+.. .|++ ++|+..|+++++ +.|++..+|..+|.++...
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 677788888888888888888888887763 4775 788888888888 6888888888888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLAN-HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~-a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
|++++|...|+++++. .|. ... ++..+|.++...|++++|+..|+++++..|.. ..+
T Consensus 113 ~~~~~A~~~~~~al~~----~p~---------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~---~~~ 170 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI----EDI---------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTR---HHV 170 (308)
T ss_dssp TCHHHHHHHHHHHHTS----SSS---------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCC---THH
T ss_pred CCHHHHHHHHHHHHhc----ccc---------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC---HHH
Confidence 8888888888888887 555 111 56777788888888888888888888887776 666
Q ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCC-cHHHHHHHHHH
Q psy8682 1766 QNGLGVLFNL-SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL---SPG-FVRARYNLGIT 1840 (1956)
Q Consensus 1766 ~~~LG~ly~~-lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL---~Pd-naeA~~~LA~a 1840 (1956)
+...+.+... .|++++|+.+|+++++..|+++.+|..+|.++..+|++++|+..|++++.. .|+ ...+|..++..
T Consensus 171 ~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 171 YVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 6655555433 688888888888888888888888888888888888888888888888885 443 66778888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1841 CVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1841 y~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
+...|++++|..+++++++..|++.+
T Consensus 251 ~~~~g~~~~a~~~~~~a~~~~p~~~~ 276 (308)
T 2ond_A 251 ESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHcCCHHHHHHHHHHHHHHcccccc
Confidence 88888888888888888888887654
No 59
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=1.9e-17 Score=182.04 Aligned_cols=156 Identities=14% Similarity=0.114 Sum_probs=96.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEP-DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldP-dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
++..++.+|..++..|++++|+..|+++++.+| .+..+++.+|.++...|++++|+..|+++++.+|++..++..+|.+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 445777777777777777777777777777776 6666777777777777777777777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CC
Q psy8682 1683 FTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS--QS 1760 (1956)
Q Consensus 1683 Y~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~--n~ 1760 (1956)
|..+|++++|+..++++++. +|+ ...+. ......+..+|.++...|++++|+..|+++++++|+ +
T Consensus 86 ~~~~~~~~~A~~~~~~al~~----~p~---~~~~~-----~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~- 152 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKA----VPG---NATIE-----KLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWK- 152 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHH----STT---CHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHH-
T ss_pred HHHcccHHHHHHHHHHHHHH----CCC---cHHHH-----HHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCccc-
Confidence 77777777777777777766 555 11111 223344444555555555555555555555555444 4
Q ss_pred CCHHHHHHHHHHHH
Q psy8682 1761 IDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~ 1774 (1956)
+.++..+|.+|.
T Consensus 153 --~~~~~~l~~~~~ 164 (228)
T 4i17_A 153 --TDALYSLGVLFY 164 (228)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 444445554443
No 60
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.78 E-value=2.6e-18 Score=213.08 Aligned_cols=215 Identities=19% Similarity=0.199 Sum_probs=195.5
Q ss_pred hHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Q psy8682 1580 DFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDL-PSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658 (1956)
Q Consensus 1580 dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~Gdy-dEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEA 1658 (1956)
.+++++.. ++.... ..|. ++..++.+|.++...|++ ++|+.+|+++++.+|+++.+++.+|.+|...|++++|
T Consensus 83 ~~~~al~~--l~~~~~---~~~~-~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A 156 (474)
T 4abn_A 83 EMEKTLQQ--MEEVLG---SAQV-EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSA 156 (474)
T ss_dssp HHHHHHHH--HHHHHT---TCCC-CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHH--HHHHhc---cCch-hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 34555554 443332 2333 788999999999999999 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1659 IAALSKCLSIEPKNLEALMAISICFTNE---------ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1659 Le~yeKALeLdPdnaeAl~~LA~aY~~l---------GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
+.+|+++++++|+ ..++..+|.+|... |++++|+..|++++++ +|+ ...++
T Consensus 157 ~~~~~~al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~p~---------------~~~~~ 216 (474)
T 4abn_A 157 HTCFSGALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----DVL---------------DGRSW 216 (474)
T ss_dssp HHHHHHHHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----CTT---------------CHHHH
T ss_pred HHHHHHHHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----CCC---------------CHHHH
Confidence 9999999999999 79999999999999 9999999999999999 666 45577
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHhCC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q psy8682 1730 LTFRSPLSSR--------EIHQQVLSLYLNAARQCP---SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR 1798 (1956)
Q Consensus 1730 lnLA~ay~~l--------GdyeEAle~LekALel~P---~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae 1798 (1956)
..+|.+|... |++++|+.+|+++++++| .+ +.+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 293 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSN---PDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 8899999999 999999999999999999 87 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
++..++.++..+|++++|+..+.+.
T Consensus 294 a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 294 PQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999877554
No 61
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.78 E-value=6.7e-18 Score=210.40 Aligned_cols=243 Identities=10% Similarity=0.133 Sum_probs=204.7
Q ss_pred cccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHhh-------cccHH------
Q psy8682 683 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL-------SDEYD------ 749 (1956)
Q Consensus 683 k~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~~-------sgeyE------ 749 (1956)
+...+|..|++.+...- ...-+.....+++..+|++|++.+|. ++++|+.+|.++.. .|+++
T Consensus 228 ~~~~~w~~~~~~e~~~~--~~~~~~~~~~~~a~~~y~~al~~~p~---~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~ 302 (530)
T 2ooe_A 228 QQVDMWKKYIQWEKSNP--LRTEDQTLITKRVMFAYEQCLLVLGH---HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFS 302 (530)
T ss_dssp HHHHHHHHHHHHHHHCS--SCCSCSHHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC--ccCCcchhHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhchhhhhccchhhhhhhh
Confidence 45689999998876411 00001111345788999999999997 89999999999986 69987
Q ss_pred -HHHHHHHHHHh-hCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCCH-HHHHHHHHHHHHc
Q psy8682 750 -KAVDCFRSALQ-VRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVI-SNWIKYAQWEESQ 826 (1956)
Q Consensus 750 -kArelFerALk-kfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s~-~lWlkYAqfE~~~ 826 (1956)
+|+++|++|++ .+|++..+|..|+.++. ..++ .++|+.+|++++...+.+. .+|+.|+.++.+.
T Consensus 303 ~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~------~~g~-------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~ 369 (530)
T 2ooe_A 303 DEAANIYERAISTLLKKNMLLYFAYADYEE------SRMK-------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA 369 (530)
T ss_dssp HHHHHHHHHHTTTTCSSCHHHHHHHHHHHH------HTTC-------HHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHH------hcCC-------HHHHHHHHHHHhCccccCchHHHHHHHHHHHHh
Confidence 89999999998 78999999999997765 2233 5578899999999767665 6999999999999
Q ss_pred CCHHHHHHHHHHhhcccCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy8682 827 KQVDRARSIYERALDVDHRNITLWLKYTELEM-RNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFH 905 (1956)
Q Consensus 827 Gd~ErARsIfERALs~~Pk~~dLWl~YadfE~-k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~Gd~e~aR~VfE 905 (1956)
|++++|+.+|++|+...|....+|...+.+|. ..|++++||.+|+++++.+|+...+|..|+++|.+.|+.++||.+|+
T Consensus 370 ~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 370 EGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 99999999999999998888888777666654 48999999999999999999999999999999999999999999999
Q ss_pred hhc---c----CchHHHHHHHHhhcccccchHHHHHHHHHHHhcccc
Q psy8682 906 RDS---I----SQVTLWLGALTLSLEGLGSNLQSWVRFLARDVGECC 945 (1956)
Q Consensus 906 RAL---~----~~~~LWl~Yi~fEle~~~~~lk~~~r~l~ralkec~ 945 (1956)
||+ + ....+|..|++||.++ ++.+...++..++++.||
T Consensus 450 ~al~~~~~~~~~~~~lw~~~~~~e~~~--G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 450 RVLTSGSLPPEKSGEIWARFLAFESNI--GDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHSCCSCGGGCHHHHHHHHHHHHHS--SCHHHHHHHHHHHHHHTH
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHCc
Confidence 998 2 2345999999999985 478888999999999888
No 62
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.78 E-value=2.6e-17 Score=181.00 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=169.5
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP-KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdP-dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
+.++.+++.+|.++...|++++|+..|+++++++| .+..+++.+|.++...|++++|+.+++++++. +|+ ..
T Consensus 4 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~p~---~~ 76 (228)
T 4i17_A 4 TTDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK----NYN---LA 76 (228)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCS---HH
T ss_pred ccCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh----Ccc---hH
Confidence 45678999999999999999999999999999998 88899999999999999999999999999999 888 32
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
... ...+.++..++..-.....+++|+.....-....... ..++..+|.++..+|++++|+..|+++++++|
T Consensus 77 ~~~-----~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 148 (228)
T 4i17_A 77 NAY-----IGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLY---AIYYLKEGQKFQQAGNIEKAEENYKHATDVTS 148 (228)
T ss_dssp HHH-----HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSC
T ss_pred HHH-----HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHH---HHHHHHHhHHHHHhccHHHHHHHHHHHHhcCC
Confidence 222 1233444444544444445555555432221111122 55789999999999999999999999999999
Q ss_pred C--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1795 D--DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1795 d--naeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
+ ++.++.++|.+|...| ...++++..+.+.....+ .+......+.+++|+.+|+++++++|+++++...++
T Consensus 149 ~~~~~~~~~~l~~~~~~~~-----~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~ 221 (228)
T 4i17_A 149 KKWKTDALYSLGVLFYNNG-----ADVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD 221 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHH-----HHHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHH-----HHHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 9 8999999999997654 455677777776665443 444556678899999999999999999999888777
Q ss_pred cchh
Q psy8682 1873 LEPR 1876 (1956)
Q Consensus 1873 ~l~~ 1876 (1956)
.+..
T Consensus 222 ~i~~ 225 (228)
T 4i17_A 222 QVKA 225 (228)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6543
No 63
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.77 E-value=6.6e-18 Score=200.71 Aligned_cols=240 Identities=14% Similarity=0.091 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------CH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ---EPD---NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK-------NL 1673 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel---dPd---naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd-------na 1673 (1956)
.++.+|..+...|++++|+.+|++++++ .++ .+.+++.+|.+|...|++++|+.++++++++.+. ..
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 184 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHH
Confidence 4556999999999999999999999987 232 4678999999999999999999999999998543 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.++..+|.+|...|++++|+.++++++++ ..... .....+.++.++|.+|...|++++|+.++++++
T Consensus 185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------~~~~~---~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 185 QCHSLFATNFLDLKQYEDAISHFQKAYSM----------AEAEK---QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTT---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------HHHcC---ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 57899999999999999999999999988 22221 123456788999999999999999999999999
Q ss_pred Hh-----C-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHHCCC---hHHHHHH
Q psy8682 1754 RQ-----C-PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-----PDDSRLWNRLGASLANGNR---PEEAVEA 1819 (1956)
Q Consensus 1754 el-----~-P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-----PdnaeA~~nLG~ay~qlGr---yeEAie~ 1819 (1956)
++ + |.. +.++..+|.++..+|++++|+.++++++.+. |.....+..+|.++...|+ +++|+..
T Consensus 252 ~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 252 AVFEESNILPSL---PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHTTCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHhhccchhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 94 4 444 8899999999999999999999999999874 3333446789999999999 8888888
Q ss_pred HHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1820 YHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1820 yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++++ ...|....++..+|.+|..+|++++|..+|++++++...
T Consensus 329 ~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 371 (383)
T 3ulq_A 329 LESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371 (383)
T ss_dssp HHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred HHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 8776 334445678899999999999999999999999998876
No 64
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=2.8e-16 Score=193.95 Aligned_cols=273 Identities=15% Similarity=0.091 Sum_probs=227.2
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLR----QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE--- 1651 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk----~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~--- 1651 (1956)
+++++|+.. |+++... . ++.+++.+|.+|.. .+++++|+.+|+++++. .++.+++.+|.+|..
T Consensus 129 ~~~~~A~~~--~~~a~~~--~----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g 198 (490)
T 2xm6_A 129 VDKAESVKW--FRLAAEQ--G----RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLG 198 (490)
T ss_dssp CCHHHHHHH--HHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred CCHHHHHHH--HHHHHHC--C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCC
Confidence 467777777 7776643 2 45578888888887 77888888888888775 567888888888887
Q ss_pred -cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhH
Q psy8682 1652 -NEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLA 1726 (1956)
Q Consensus 1652 -lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a 1726 (1956)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. ...
T Consensus 199 ~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------~~~ 255 (490)
T 2xm6_A 199 VERNDAISAQWYRKSATS--GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ---------------------GNS 255 (490)
T ss_dssp SCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT---------------------TCH
T ss_pred CCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---------------------CCH
Confidence 78888888888888765 467788888888886 77888888888888766 234
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCH
Q psy8682 1727 NHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-----DEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1727 ~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-----GdyeEAie~fekALel~Pdna 1797 (1956)
.+++.+|.+|.. .+++++|+.+|+++++. .+ +.+++.+|.+|... +++++|+.+|+++++. .++
T Consensus 256 ~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~---~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 256 IAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GN---SDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp HHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TC---HHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CC---HHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 567889999998 89999999999999875 44 77999999999988 9999999999999986 568
Q ss_pred HHHHHHHHHHHHCC---ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhc
Q psy8682 1798 RLWNRLGASLANGN---RPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTP 1870 (1956)
Q Consensus 1798 eA~~nLG~ay~qlG---ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~ 1870 (1956)
.+++.+|.+|...| ++++|+.+|+++++. .++.++++||.+|.. .+++++|+.+|+++++. .++.+++.
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~ 404 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQ 404 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHH
Confidence 89999999999977 899999999999987 678999999999999 89999999999999886 46889999
Q ss_pred cccchhh----hcccHHHHHHHHHhccccC
Q psy8682 1871 HGLEPRA----VKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1871 LG~l~~~----lg~~seAIws~Lr~Al~l~ 1896 (1956)
+|.++.. .+++.+++ .++++|...-
T Consensus 405 Lg~~y~~g~g~~~d~~~A~-~~~~~A~~~~ 433 (490)
T 2xm6_A 405 LGEIYYYGLGVERDYVQAW-AWFDTASTND 433 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHH-HHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCHHHHH-HHHHHHHHCC
Confidence 9999987 77877776 7777777665
No 65
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=3.7e-16 Score=192.85 Aligned_cols=273 Identities=18% Similarity=0.109 Sum_probs=240.6
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHH----cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLR----QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-- 1651 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk----~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~-- 1651 (1956)
.+++++|+.. |.++... . ++.+++.+|..|.. .+++++|+..|+++.+. +++.+++.+|.+|..
T Consensus 92 ~~~~~~A~~~--~~~a~~~--~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~ 161 (490)
T 2xm6_A 92 PQDYAQAVIW--YKKAALK--G----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGD 161 (490)
T ss_dssp CCCHHHHHHH--HHHHHHT--T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHH--HHHHHHC--C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCC
Confidence 4678888888 8888743 2 45699999999999 89999999999999875 589999999999998
Q ss_pred --cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhh
Q psy8682 1652 --NEQDPQAIAALSKCLSIEPKNLEALMAISICFTN----EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRL 1725 (1956)
Q Consensus 1652 --lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~----lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~ 1725 (1956)
.+++++|+.+|+++++. .++.+++.+|.+|.. .+++++|+.+|+++++. ..
T Consensus 162 g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---------------------~~ 218 (490)
T 2xm6_A 162 GVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS---------------------GD 218 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---------------------TC
T ss_pred CCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC---------------------CC
Confidence 88999999999999986 578999999999998 89999999999999877 13
Q ss_pred HHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q psy8682 1726 ANHTLTFRSPLSS----REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRPDDS 1797 (1956)
Q Consensus 1726 a~a~lnLA~ay~~----lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~Pdna 1797 (1956)
..+++.+|.+|.. .+++++|+.+|+++++. .+ +.+++.+|.+|.. .+++++|+.+|+++++. .++
T Consensus 219 ~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~---~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~ 291 (490)
T 2xm6_A 219 ELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ--GN---SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNS 291 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT--TC---HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCH
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCH
Confidence 3567889999987 89999999999999876 34 7799999999998 99999999999999875 678
Q ss_pred HHHHHHHHHHHHC-----CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1798 RLWNRLGASLANG-----NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG---ANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1798 eA~~nLG~ay~ql-----GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG---dyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.+++.+|.+|... +++++|+.+|+++++. .+..++++||.+|...| ++++|+.+|+++++. +++.+++
T Consensus 292 ~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~ 367 (490)
T 2xm6_A 292 DGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQF 367 (490)
T ss_dssp HHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHH
Confidence 9999999999998 9999999999999986 56789999999999977 899999999999987 6889999
Q ss_pred ccccchhh----hcccHHHHHHHHHhcccc
Q psy8682 1870 PHGLEPRA----VKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1870 ~LG~l~~~----lg~~seAIws~Lr~Al~l 1895 (1956)
.+|.++.. .+++.+++ .+++++...
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~-~~~~~A~~~ 396 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAA-IWMRKAAEQ 396 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHH-HHHHHHHHT
T ss_pred HHHHHHHcCCCCCCCHHHHH-HHHHHHHhC
Confidence 99999988 77887777 777777654
No 66
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.75 E-value=9.7e-18 Score=210.02 Aligned_cols=246 Identities=11% Similarity=0.041 Sum_probs=184.9
Q ss_pred ccchhhHHHhhhcccccccCCCCchhHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHh----hcccHHHHHHHHHHHH
Q psy8682 684 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN----LSDEYDKAVDCFRSAL 759 (1956)
Q Consensus 684 ~~~l~~~~~~l~~~~l~~en~~~~~~~~e~v~~vF~~A~q~n~~~~~d~dV~~~La~Ly~----~sgeyEkArelFerAL 759 (1956)
|.+||..|++.....- +..+.+.++|++|+..-.....++++|..++.++. .++++++++.+|++|+
T Consensus 46 s~~LW~~Y~~f~~~~~---------~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL 116 (493)
T 2uy1_A 46 NLDLWMLYIEYVRKVS---------QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRAL 116 (493)
T ss_dssp CHHHHHHHHHHHHHHC-------------CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC---------chHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHH
Confidence 7889999999876421 12357899999999973211226899999999986 3578999999999999
Q ss_pred hhCCCC--HH------------------------------------------------HHHHHHhhccCCCCCCCCCChH
Q psy8682 760 QVRPDF--TE------------------------------------------------LLVYLFSSLDFQPPKQKISDPD 789 (1956)
Q Consensus 760 kkfP~d--~~------------------------------------------------IWl~ylsfL~~~~~~~ki~d~E 789 (1956)
.. |.. .. +|..|+.+....+ ...+
T Consensus 117 ~~-P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~-----~~~~ 190 (493)
T 2uy1_A 117 QT-PMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENG-----MKLG 190 (493)
T ss_dssp TS-CCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCT-----TCCC
T ss_pred hC-hhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCC-----ccCc
Confidence 84 432 33 4555554433110 0001
Q ss_pred HhhHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHhhcccCCCH----------------------
Q psy8682 790 ELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNI---------------------- 847 (1956)
Q Consensus 790 ea~~~~~RAR~lyEraL~~~~~s~~lWlkYAqfE~~~Gd~ErARsIfERALs~~Pk~~---------------------- 847 (1956)
. .....|++.+|++||..+|....+|+.|++|+...|++++||.||+||+.. |.+.
T Consensus 191 ~-~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~ 268 (493)
T 2uy1_A 191 G-RPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRK 268 (493)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHH
T ss_pred c-hhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHH
Confidence 1 113567889999999999999999999999999999999999999999998 8764
Q ss_pred ------------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhhc
Q psy8682 848 ------------------TLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLE-NVAGKLFVFHRDS 908 (1956)
Q Consensus 848 ------------------dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~kYidfE~k~G-d~e~aR~VfERAL 908 (1956)
.+|+.|++|+.+.+++++||.||++| ...+....+|..|+.+|...| |.++||.||++++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al 347 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGL 347 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 35666777777888999999999999 543445789999999999877 6999999999998
Q ss_pred ---cCchHHHHHHHHhhccccc------------chHHHHHHHHHHHhccccCccce
Q psy8682 909 ---ISQVTLWLGALTLSLEGLG------------SNLQSWVRFLARDVGECCCGQVV 950 (1956)
Q Consensus 909 ---~~~~~LWl~Yi~fEle~~~------------~~lk~~~r~l~ralkec~~g~~~ 950 (1956)
+..+++|+.|++||.+.+. ++...|.+|++.+.+ .|+.-
T Consensus 348 ~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~~~lw~~~~~fE~~---~G~~~ 401 (493)
T 2uy1_A 348 LKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKTSRMWDSMIEYEFM---VGSME 401 (493)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCBHHHHHHHHHHHHH---HSCHH
T ss_pred HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCHH
Confidence 6778999999999877432 124557777777433 56644
No 67
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.75 E-value=1.4e-17 Score=217.39 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=106.7
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
|++++++++||.+|..+|++++|+.+|++++++ +|+ ...++.++|.+|..+|++++|+..|
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----~P~---------------~~~a~~nLg~~l~~~g~~~eA~~~~ 66 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEV----FPE---------------FAAAHSNLASVLQQQGKLQEALMHY 66 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSC---------------CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 444445555555555555555555555555554 333 2334445555555555555555555
Q ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1750 ekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+++++++|++ +.+++++|.+|..+|++++|+++|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|+
T Consensus 67 ~~Al~l~P~~---~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 67 KEAIRISPTF---ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 5555556665 6666666666666666666666666666666666666666666666667777777777777766776
Q ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1830 FVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1830 naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
+..++.+||.+|..+|++++|.+.|++++++.|+.
T Consensus 144 ~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred ChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 66667777777777777777777777766666553
No 68
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.75 E-value=2e-17 Score=196.63 Aligned_cols=244 Identities=12% Similarity=0.025 Sum_probs=204.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSI---EPK---NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeL---dPd---naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.++.+|.++...|++++|+.+|++++++ .++ .+.++..+|.+|...|++++|+.++++++++ +.
T Consensus 105 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------~~ 174 (383)
T 3ulq_A 105 FNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEI----------YK 174 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HH
Confidence 3455999999999999999999999987 232 4578999999999999999999999999998 33
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
.... ..+..+.++.++|.+|...|++++|+.+|++++++.+.. .....++.++|.+|..+|++++|+.+|++++.
T Consensus 175 ~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 175 EHEA--YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp TCST--THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCcc--chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2221 024567789999999999999999999999999886543 11235899999999999999999999999999
Q ss_pred -----hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHH
Q psy8682 1792 -----VR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-----PGFVRARYNLGITCVHLGA---NTQAVEHFLTA 1857 (1956)
Q Consensus 1792 -----l~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-----PdnaeA~~~LA~ay~klGd---yEEAie~yekA 1857 (1956)
.+ |..+.++.++|.++..+|++++|+.++++++++. |.....+..+|.++...|+ +++|+.+++++
T Consensus 253 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~ 332 (383)
T 3ulq_A 253 VFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK 332 (383)
T ss_dssp HHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT
T ss_pred HHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 45 7778999999999999999999999999999873 3344456789999999999 88888888877
Q ss_pred HHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1858 LNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1858 LeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
...|....++..+|.++...|++.+|+ .++++++.+...
T Consensus 333 -~~~~~~~~~~~~la~~y~~~g~~~~A~-~~~~~al~~~~~ 371 (383)
T 3ulq_A 333 -MLYADLEDFAIDVAKYYHERKNFQKAS-AYFLKVEQVRQL 371 (383)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTS
T ss_pred -cCHHHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHHHH
Confidence 455566678999999999999998888 778877666544
No 69
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.74 E-value=2e-17 Score=216.06 Aligned_cols=172 Identities=20% Similarity=0.243 Sum_probs=123.8
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.|++++++++||.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|++++++ +|+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----~P~----- 75 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI----SPT----- 75 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-----
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC-----
Confidence 46666666677777777777777777777777777776666777777777777777777777777666 554
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.+.++.++|.++..+|++++|++.|+++++++|++ +.+++++|.+|..+|++++|+.+|+++++++|
T Consensus 76 ----------~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~---~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P 142 (723)
T 4gyw_A 76 ----------FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF---ADAHSNLASIHKDSGNIPEAIASYRTALKLKP 142 (723)
T ss_dssp ----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred ----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34456666777777777777777777777777777 77777777777777777777777777777777
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
+++.++.++|.+|..+|++++|++.|++++++.|
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~ 176 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVA 176 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHHhCh
Confidence 7777777777777777877777777777776544
No 70
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.73 E-value=9.5e-17 Score=180.73 Aligned_cols=214 Identities=9% Similarity=0.028 Sum_probs=142.0
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1633 KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN---LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1633 eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn---aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
...|.++..++.+|..+...|++++|+..|+++++..|++ ..+++.+|.+|...|++++|+..|+++++. .|+
T Consensus 9 ~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~p~ 84 (261)
T 3qky_A 9 RLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI----YQI 84 (261)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----CCC
Confidence 4456677777777777777777777777777777777777 677777777777777777777777777777 665
Q ss_pred chhhhhhcCcchhhhhHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1710 PSAYKADALPSKLTRLANHTLTFRSPLSS--------REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781 (1956)
Q Consensus 1710 ~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~--------lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE 1781 (1956)
.+....+++.+|.++.. .|++++|+..|+++++.+|++ ..+...++.+....+
T Consensus 85 ------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~~~~~~~~---- 145 (261)
T 3qky_A 85 ------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH---ELVDDATQKIRELRA---- 145 (261)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC---TTHHHHHHHHHHHHH----
T ss_pred ------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc---hhHHHHHHHHHHHHH----
Confidence 12344567778888887 999999999999999999988 333322222111111
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---cHHHHHHHHHHHHHc----------CCHH
Q psy8682 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---FVRARYNLGITCVHL----------GANT 1848 (1956)
Q Consensus 1782 Aie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---naeA~~~LA~ay~kl----------GdyE 1848 (1956)
.....++.+|.+|...|++++|+..|+++++..|+ ...+++.+|.+|..+ |+++
T Consensus 146 -------------~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~ 212 (261)
T 3qky_A 146 -------------KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYR 212 (261)
T ss_dssp -------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHH
T ss_pred -------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHH
Confidence 11223566666666666666666666666666665 445666666666655 6666
Q ss_pred HHHHHHHHHHHhcCCCh---hchhccccchhhhcccH
Q psy8682 1849 QAVEHFLTALNQQAATH---DGLTPHGLEPRAVKEMS 1882 (1956)
Q Consensus 1849 EAie~yekALeLdPdn~---dA~~~LG~l~~~lg~~s 1882 (1956)
+|+.+|+++++..|+++ .+...++.++..++++.
T Consensus 213 ~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 213 RAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 67777777777766664 34444555555555443
No 71
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=191.20 Aligned_cols=250 Identities=13% Similarity=0.079 Sum_probs=197.9
Q ss_pred CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Q psy8682 1635 EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--------EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQES 1706 (1956)
Q Consensus 1635 dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--------dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~ 1706 (1956)
+|..+.++..+|.++...|++++|+.+|++++++ .|....++..+|.+|...|++++|+.++++++..
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---- 98 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAI---- 98 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----
Confidence 4666889999999999999999999999999995 5667788999999999999999999999999988
Q ss_pred CCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1707 NPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC-----PSQSIDPDVQNGLGVLFNLSDEYDK 1781 (1956)
Q Consensus 1707 dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~-----P~n~~~a~a~~~LG~ly~~lGdyeE 1781 (1956)
+....... .+....++..+|.++...|++++|+.+++++++.. +.......++..+|.++...|++++
T Consensus 99 ------~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 99 ------REKTLGKD-HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp ------HHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred ------HHHHhCCC-ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 33321111 24567788999999999999999999999999874 2221236789999999999999999
Q ss_pred HHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC---------------cHHHHHHHH
Q psy8682 1782 AVDCFRSALQV--------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---------------FVRARYNLG 1838 (1956)
Q Consensus 1782 Aie~fekALel--------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd---------------naeA~~~LA 1838 (1956)
|+.+|++++.. .|....++..+|.++..+|++++|+.+|+++++..+. ....+..++
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999999998 6667788999999999999999999999999986432 233455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccC
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPF 1896 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~ 1896 (1956)
..+...+.+.+|...+++++...|..+.++..+|.++...|++.+|+ .++++++.+.
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al~l~ 308 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAE-TLEEAAMRSR 308 (311)
T ss_dssp ------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHHh
Confidence 66677778888899999999999999999999999999999998887 7777776553
No 72
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.72 E-value=1.2e-16 Score=190.01 Aligned_cols=242 Identities=16% Similarity=0.118 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-------
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEP------DNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK------- 1671 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldP------dnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd------- 1671 (1956)
...++.+|..+...|++++|+.+|+++++..+ ..+.+++.+|.+|...|++++|+.++++++++.+.
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 180 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR 180 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh
Confidence 34677899999999999999999999998742 24678999999999999999999999999987542
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
...++..+|.+|...|++++|+.++++++++ ...... ....+.++.++|.+|...|++++|+.++++
T Consensus 181 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~----------~~~~~~---~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~ 247 (378)
T 3q15_A 181 TIQSLFVIAGNYDDFKHYDKALPHLEAALEL----------AMDIQN---DRFIAISLLNIANSYDRSGDDQMAVEHFQK 247 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----------HHHcCC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2457889999999999999999999999998 222211 124567889999999999999999999999
Q ss_pred HHH-----hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHCCC---hHHHHH
Q psy8682 1752 AAR-----QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP-----DDSRLWNRLGASLANGNR---PEEAVE 1818 (1956)
Q Consensus 1752 ALe-----l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P-----dnaeA~~nLG~ay~qlGr---yeEAie 1818 (1956)
++. .+|.. ..++..+|.++..+|++++|+.++++++.+.+ .....+..++.++...++ +.+|+.
T Consensus 248 al~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 248 AAKVSREKVPDLL---PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHCGGGH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHhhCChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 999 55655 88999999999999999999999999999854 334567788888989998 888888
Q ss_pred HHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1819 ~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.+++. ...+....++..+|.+|...|++++|+.+|++++++...
T Consensus 325 ~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~ 368 (378)
T 3q15_A 325 YFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQED 368 (378)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhC-CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 88772 223445567889999999999999999999999987654
No 73
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.72 E-value=1.2e-16 Score=179.82 Aligned_cols=200 Identities=11% Similarity=0.059 Sum_probs=157.7
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHH
Q psy8682 1666 LSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQV 1745 (1956)
Q Consensus 1666 LeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEA 1745 (1956)
....|.++..++.+|..+...|++++|+..|++++.. .|. .+....+++.+|.++...|++++|
T Consensus 8 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~----~p~------------~~~~~~a~~~lg~~~~~~~~~~~A 71 (261)
T 3qky_A 8 GRLRHSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY----GRT------------HEWAADAQFYLARAYYQNKEYLLA 71 (261)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG----CSC------------STTHHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCC------------CcchHHHHHHHHHHHHHhCcHHHH
Confidence 3457888888899999999999999999999999888 666 123356778888888889999999
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHH
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNL--------SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~--------lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAi 1817 (1956)
+..|+++++..|++.....+++.+|.++.. +|++++|+..|++++...|++..+...++.+....
T Consensus 72 ~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~------- 144 (261)
T 3qky_A 72 ASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELR------- 144 (261)
T ss_dssp HHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHH-------
Confidence 999999988888664446788888888888 88888888888888888888765554443322211
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC---hhchhccccchhhh----------cccHHH
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT---HDGLTPHGLEPRAV----------KEMSDS 1884 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn---~dA~~~LG~l~~~l----------g~~seA 1884 (1956)
+.....++.+|.+|...|++++|+..|+++++..|++ +++++.+|.++..+ |++.++
T Consensus 145 ----------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A 214 (261)
T 3qky_A 145 ----------AKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRA 214 (261)
T ss_dssp ----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHH
Confidence 1123447899999999999999999999999999994 56999999999877 777777
Q ss_pred HHHHHHhccccCCCC
Q psy8682 1885 IWYSLRGFHPPFGDK 1899 (1956)
Q Consensus 1885 Iws~Lr~Al~l~gr~ 1899 (1956)
+ ..++.++...+..
T Consensus 215 ~-~~~~~~~~~~p~~ 228 (261)
T 3qky_A 215 V-ELYERLLQIFPDS 228 (261)
T ss_dssp H-HHHHHHHHHCTTC
T ss_pred H-HHHHHHHHHCCCC
Confidence 7 7888888888776
No 74
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.71 E-value=9e-17 Score=185.85 Aligned_cols=223 Identities=13% Similarity=0.089 Sum_probs=181.6
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK------NLEALMAISICFTNEACLHDAL 1693 (1956)
Q Consensus 1620 dydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd------naeAl~~LA~aY~~lGdydEAL 1693 (1956)
++++|+.+|+++ |.+|...|++++|+.+|.+++++.+. ...++.++|.+|..+|++++|+
T Consensus 32 ~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 97 (292)
T 1qqe_A 32 KFEEAADLCVQA--------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAV 97 (292)
T ss_dssp HHHHHHHHHHHH--------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 489999999887 66788999999999999999998532 2568999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCCCC---CHHHHHHH
Q psy8682 1694 DTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR-EIHQQVLSLYLNAARQCPSQSI---DPDVQNGL 1769 (1956)
Q Consensus 1694 e~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l-GdyeEAle~LekALel~P~n~~---~a~a~~~L 1769 (1956)
.+|++++.+ +..... ....+.++.++|.+|... |++++|+.+|++++++.|.... ...++..+
T Consensus 98 ~~~~~Al~l----------~~~~g~---~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 164 (292)
T 1qqe_A 98 DSLENAIQI----------FTHRGQ---FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKC 164 (292)
T ss_dssp HHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHH----------HHHcCC---HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 999999998 333321 223467788999999996 9999999999999999875411 14578999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH-----HHHH
Q psy8682 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSR-------LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-----RYNL 1837 (1956)
Q Consensus 1770 G~ly~~lGdyeEAie~fekALel~Pdnae-------A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-----~~~L 1837 (1956)
|.++..+|++++|+.+|++++.+.|++.. ++.++|.++..+|++++|+.+|+++++++|+...+ +..+
T Consensus 165 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l 244 (292)
T 1qqe_A 165 ADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSL 244 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Confidence 99999999999999999999999887643 68899999999999999999999999999986553 4556
Q ss_pred HHHHH--HcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1838 GITCV--HLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1838 A~ay~--klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
+.++. ..+++++|+..|++++.++|.+...+.
T Consensus 245 ~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~ 278 (292)
T 1qqe_A 245 IDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILN 278 (292)
T ss_dssp HHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHH
Confidence 66664 467899999999999999987654433
No 75
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.71 E-value=9.6e-17 Score=177.60 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=185.3
Q ss_pred HcCChHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHH
Q psy8682 1617 RQGDLPSAILYLEAAAKQ--------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE--------PKNLEALMAIS 1680 (1956)
Q Consensus 1617 k~GdydEAIe~fekALel--------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd--------PdnaeAl~~LA 1680 (1956)
..|++++|+.+|+++++. .|..+.++..+|.++...|++++|+.+|++++++. |....++..+|
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 356777777777777763 25567889999999999999999999999999873 55667899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----
Q psy8682 1681 ICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ----- 1755 (1956)
Q Consensus 1681 ~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel----- 1755 (1956)
.+|...|++++|+.++++++.. +....... .+....++.++|.++...|++++|+.+++++++.
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 161 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEI----------REKVLGKF-HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRL 161 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHH----------HHHHHCTT-CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHhccHHHHHHHHHHHHHH----------HHHHcCCC-ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999988 43332111 2566788999999999999999999999999998
Q ss_pred ---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHCCChH------HHH
Q psy8682 1756 ---CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV---------RPDDSRLWNRLGASLANGNRPE------EAV 1817 (1956)
Q Consensus 1756 ---~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel---------~PdnaeA~~nLG~ay~qlGrye------EAi 1817 (1956)
.|.. ..++..+|.++..+|++++|+.+|++++++ .+....++..++..+...+... ++.
T Consensus 162 ~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (283)
T 3edt_B 162 GPDDPNV---AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYG 238 (283)
T ss_dssp CTTCHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC--------
T ss_pred CCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 5554 788999999999999999999999999987 4555667778887777655544 333
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLd 1861 (1956)
..++......|....++..+|.+|..+|++++|+.+|++++++.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 239 SWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp ----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 34443333456677899999999999999999999999999763
No 76
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.70 E-value=1.3e-15 Score=179.37 Aligned_cols=282 Identities=11% Similarity=-0.062 Sum_probs=227.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH-----
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA-----EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL----- 1673 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdna-----eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna----- 1673 (1956)
..+.+..+|..+...|++++|+..+++++...|... .++..+|.++...|++++|+..+++++.+.+...
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 92 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYA 92 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 356778899999999999999999999999887552 2678999999999999999999999998765332
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1674 -EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1674 -eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
.++..+|.++...|++++|+.++++++.. ........ .+.....+.++|.++...|++++|..+++++
T Consensus 93 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 93 LWSLIQQSEILFAQGFLQTAWETQEKAFQL----------INEQHLEQ-LPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTCTT-STHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHhcccc-CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34788999999999999999999999988 22221100 1235567788999999999999999999999
Q ss_pred HHhCCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C-HHHH----HHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1753 ARQCPSQ--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--D-SRLW----NRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1753 Lel~P~n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd--n-aeA~----~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+...+.. .....++..+|.++...|++++|..++++++.+.+. . .... ..++.++...|++++|...++++
T Consensus 162 l~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 241 (373)
T 1hz4_A 162 IEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHT 241 (373)
T ss_dssp HHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 9998764 112467889999999999999999999999987432 2 2211 13456688999999999999999
Q ss_pred HhhCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh------hchhccccchhhhcccHHHHHHHHHhcc
Q psy8682 1824 LQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTALNQQAATH------DGLTPHGLEPRAVKEMSDSIWYSLRGFH 1893 (1956)
Q Consensus 1824 LeL~Pdn----aeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~------dA~~~LG~l~~~lg~~seAIws~Lr~Al 1893 (1956)
+...+.. ...+..+|.++...|++++|...+++++...+... .++..+|.++...|+..++. ..++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~l~~al 320 (373)
T 1hz4_A 242 AKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQ-RVLLDAL 320 (373)
T ss_dssp CCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred CCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHH-HHHHHHH
Confidence 9876643 34678899999999999999999999998865422 47788899999999988776 7777776
Q ss_pred ccCC
Q psy8682 1894 PPFG 1897 (1956)
Q Consensus 1894 ~l~g 1897 (1956)
....
T Consensus 321 ~~~~ 324 (373)
T 1hz4_A 321 KLAN 324 (373)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.69 E-value=2.7e-15 Score=155.52 Aligned_cols=175 Identities=18% Similarity=0.222 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
...+..+|.++...|++++|+..+++++.. .|. ...++..+|.++...|++++|+.+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAF---------------DVDVALHLGIAYVKTGAVDRGTELLERS 68 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSC---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----Ccc---------------ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457888999999999999999999999888 555 3456788999999999999999999999
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
++..|.+ ..++..+|.++...|++++|+.++++++...|.+..++..+|.++...|++++|+.+++++++..|.+..
T Consensus 69 ~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 145 (186)
T 3as5_A 69 LADAPDN---VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145 (186)
T ss_dssp HHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HhcCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
++..+|.++...|++++|+.++++++++.|++.....
T Consensus 146 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 182 (186)
T 3as5_A 146 VHRAIAFSYEQMGRHEEALPHFKKANELDEGASVELA 182 (186)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCCGGGG
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCchhhHh
Confidence 9999999999999999999999999999999776543
No 78
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.68 E-value=3.3e-15 Score=176.90 Aligned_cols=242 Identities=10% Similarity=-0.003 Sum_probs=216.5
Q ss_pred HHHHHHHHcCCh-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---
Q psy8682 1610 ALGQEKLRQGDL-PSAILYLEAAAKQEPDNAEVWLSLGISLAENE--QDPQAIAALSKCLSIEPKNLEALMAISICF--- 1683 (1956)
Q Consensus 1610 ~LG~aylk~Gdy-dEAIe~fekALeldPdnaeAl~~LA~ay~~lG--dyeEALe~yeKALeLdPdnaeAl~~LA~aY--- 1683 (1956)
.........|.+ ++|+.++.++|.++|++..+|+..+.++...| ++++++..+.+++..+|++..+|+..+.++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~ 116 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQI 116 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHH
Confidence 334444555555 68999999999999999999999999999999 999999999999999999999999999999
Q ss_pred -HHc---CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCC
Q psy8682 1684 -TNE---ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ--QVLSLYLNAARQCP 1757 (1956)
Q Consensus 1684 -~~l---GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye--EAle~LekALel~P 1757 (1956)
... +++++++.++.++++. +|+ ...++...+.++...|.++ ++++++.++++.+|
T Consensus 117 ~~~l~~~~~~~~EL~~~~~~l~~----~pk---------------ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~ 177 (306)
T 3dra_A 117 MELNNNDFDPYREFDILEAMLSS----DPK---------------NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL 177 (306)
T ss_dssp HHHTTTCCCTHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT
T ss_pred HHhccccCCHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC
Confidence 777 7899999999999999 777 4456677888888999998 99999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH-HHHHHHHHHhhC---
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDE------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE-AVEAYHTALQLS--- 1827 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGd------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE-Aie~yeKALeL~--- 1827 (1956)
.+ ..+|..++.++...++ ++++++++++++..+|++..+|+.++.++...|+..+ ....+.+++.+.
T Consensus 178 ~N---~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~ 254 (306)
T 3dra_A 178 KN---NSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ 254 (306)
T ss_dssp TC---HHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred CC---HHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence 99 9999999999999988 9999999999999999999999999999999999666 445777777766
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hcCCChhchhcccc
Q psy8682 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALN-QQAATHDGLTPHGL 1873 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klGdyEEAie~yekALe-LdPdn~dA~~~LG~ 1873 (1956)
|.+..++..+|.+|.+.|+.++|+++|+.+.+ ++|-....|..++.
T Consensus 255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHh
Confidence 88899999999999999999999999999997 89997777766543
No 79
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.67 E-value=5.6e-16 Score=200.84 Aligned_cols=193 Identities=11% Similarity=-0.010 Sum_probs=171.0
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAA--------KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekAL--------eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~ 1677 (1956)
.+++..| ...|++++|+..|++++ +.+|++..+++.+|.++...|++++|+..|+++++.+|++..+++
T Consensus 395 ~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~ 471 (681)
T 2pzi_A 395 AASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVW 471 (681)
T ss_dssp THHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred chHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHH
Confidence 3666666 78899999999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.+|.+|...|++++|+..|++++++ +|+ ...+++++|.++...|++++ +..|+++++++|
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l----~P~---------------~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P 531 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDT----FPG---------------ELAPKLALAATAELAGNTDE-HKFYQTVWSTND 531 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----STT---------------CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCC---------------ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC
Confidence 9999999999999999999999999 776 34567899999999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHH-HHHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA-VEAYHTAL 1824 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEA-ie~yeKAL 1824 (1956)
++ ..+++++|.++..+|++++|+..|+++++++|++..++.++|.++...++.++| ...+++|+
T Consensus 532 ~~---~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 532 GV---ISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred ch---HHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 99 999999999999999999999999999999999999999999999887764433 33344333
No 80
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.67 E-value=4.2e-15 Score=175.10 Aligned_cols=274 Identities=11% Similarity=0.005 Sum_probs=219.7
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCC-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHH
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPM-QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLG 1646 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~-~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA 1646 (1956)
.....+++++|+.. +++++...+.+.. ....++..+|.++...|++++|+..+++++...+.. ..++..+|
T Consensus 23 ~~~~~g~~~~A~~~--~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 23 VAINDGNPDEAERL--AKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHTTCHHHHHHH--HHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHH--HHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44556789999988 8888877654332 134578889999999999999999999999876533 23578899
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIE--------PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLd--------PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.++...|++++|+.++++++++. |....++..+|.++...|++++|..++++++.. .+. . .
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----~~~---~---~- 169 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV----LSS---Y---Q- 169 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTT---S---C-
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----hhc---c---C-
Confidence 99999999999999999999875 334567888999999999999999999999998 443 1 1
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ----NGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~----~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.+.....+..+|.++...|++++|..++++++.+.+......... ..++.++...|++++|...+++++...+
T Consensus 170 ---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 170 ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp ---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred ---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 112345678899999999999999999999998754321111111 1345668899999999999999998776
Q ss_pred CC----HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1795 DD----SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1795 dn----aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd------naeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
.. ...+..+|.++...|++++|+..+++++...+. ...++..+|.++...|++++|...|++++.+.+.
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~ 325 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 325 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc
Confidence 53 346788999999999999999999999886432 2357889999999999999999999999998765
No 81
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.67 E-value=2.8e-16 Score=203.70 Aligned_cols=200 Identities=11% Similarity=0.010 Sum_probs=177.6
Q ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Q psy8682 1633 KQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL--------SIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQ 1704 (1956)
Q Consensus 1633 eldPdnaeAl~~LA~ay~~lGdyeEALe~yeKAL--------eLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~ 1704 (1956)
..+|+++.+++..| ...|++++|++.|++++ +.+|++..+++.+|.+|...|++++|+..|+++++.
T Consensus 388 ~~~p~~~~a~~~~a---~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~-- 462 (681)
T 2pzi_A 388 LVDPTDVAASVLQA---TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER-- 462 (681)
T ss_dssp CCCTTSTTHHHHHH---TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--
T ss_pred cCCCCCcchHHhhc---ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--
Confidence 45788888887777 78899999999999999 899999999999999999999999999999999999
Q ss_pred CCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy8682 1705 ESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 1784 (1956)
Q Consensus 1705 e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie 1784 (1956)
+|+ ...+++++|.++...|++++|+..|+++++++|++ ..+++++|.++..+|++++ +.
T Consensus 463 --~p~---------------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~---~~~~~~lg~~~~~~g~~~~-~~ 521 (681)
T 2pzi_A 463 --VGW---------------RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE---LAPKLALAATAELAGNTDE-HK 521 (681)
T ss_dssp --HCC---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC---SHHHHHHHHHHHHHTCCCT-TC
T ss_pred --Ccc---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCChHH-HH
Confidence 666 45678999999999999999999999999999999 9999999999999999999 99
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q psy8682 1785 CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA-VEHFLTAL 1858 (1956)
Q Consensus 1785 ~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA-ie~yekAL 1858 (1956)
.|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..+++++|.++...++.++| ...+++|+
T Consensus 522 ~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 522 FYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999887763333 33444443
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.67 E-value=1.7e-15 Score=180.26 Aligned_cols=241 Identities=11% Similarity=0.024 Sum_probs=201.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1641 VWLSLGISLAENEQDPQAIAALSKCLSIEP------KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1641 Al~~LA~ay~~lGdyeEALe~yeKALeLdP------dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.++.+|..+...|++++|+..|++++++.+ ..+.++..+|.+|...|++++|+.++++++++ +.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~----------~~ 172 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI----------YQ 172 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH----------HH
Confidence 577899999999999999999999998742 24568999999999999999999999999998 32
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..... ....+.++.++|.++...|++++|+.+|.+++++.+.. .....++.++|.+|..+|++++|+.+|++++.
T Consensus 173 ~~~~~--~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 173 NHPLY--SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp TSTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hCCCc--hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22210 12467788999999999999999999999999875422 12356889999999999999999999999999
Q ss_pred -----hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHH
Q psy8682 1792 -----VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-----PGFVRARYNLGITCVHLGA---NTQAVEHFLTAL 1858 (1956)
Q Consensus 1792 -----l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~-----PdnaeA~~~LA~ay~klGd---yEEAie~yekAL 1858 (1956)
.+|..+.++..+|.++..+|++++|+.++++++++. +.....+..++.++...|+ +.+|+.++++ .
T Consensus 251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~-~ 329 (378)
T 3q15_A 251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK-K 329 (378)
T ss_dssp HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH-T
T ss_pred HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-C
Confidence 677788999999999999999999999999999984 4445567788889999998 8888888887 2
Q ss_pred HhcCCChhchhccccchhhhcccHHHHHHHHHhcccc
Q psy8682 1859 NQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1859 eLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l 1895 (1956)
...|.....+..+|.++...|++.+|+ .++++++.+
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~-~~~~~al~~ 365 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAA-AFYRKVLKA 365 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHHH
Confidence 344555668889999999999998888 777776544
No 83
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.67 E-value=1.2e-15 Score=176.42 Aligned_cols=218 Identities=9% Similarity=0.026 Sum_probs=175.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHH
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPD------NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------LEALMA 1678 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPd------naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------aeAl~~ 1678 (1956)
.|.++...|++++|+.+|++++.+.+. .+.++..+|.+|..+|++++|+.+|++++++.+.. ..++.+
T Consensus 43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~ 122 (292)
T 1qqe_A 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (292)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 366788999999999999999988532 26789999999999999999999999999987643 457899
Q ss_pred HHHHHHHc-CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1679 ISICFTNE-ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1679 LA~aY~~l-GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
+|.+|... |++++|+.+|++++++ .|. ... ......++.++|.++..+|++++|+.+|++++++.|
T Consensus 123 lg~~~~~~lg~~~~A~~~~~~Al~~----~~~------~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 189 (292)
T 1qqe_A 123 LGEILENDLHDYAKAIDCYELAGEW----YAQ------DQS---VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSM 189 (292)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHH----HHH------TTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHH----HHh------CCC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 99999996 9999999999999998 332 110 112356788999999999999999999999999998
Q ss_pred CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHH--HCCChHHHHHHHHHHHhh
Q psy8682 1758 SQSI----DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR-----LWNRLGASLA--NGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1758 ~n~~----~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdnae-----A~~nLG~ay~--qlGryeEAie~yeKALeL 1826 (1956)
.+.. ...++..+|.++..+|++++|+.+|++++.++|.... .+..++.++. ..+++++|+..|++++.+
T Consensus 190 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l 269 (292)
T 1qqe_A 190 GNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL 269 (292)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred cCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCcc
Confidence 7611 1236889999999999999999999999999998654 3455666665 567899999999999999
Q ss_pred CCCcHHHHHHHHHHH
Q psy8682 1827 SPGFVRARYNLGITC 1841 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay 1841 (1956)
+|.....+..+-..+
T Consensus 270 ~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 270 DKWKITILNKIKESI 284 (292)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 988766666555444
No 84
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.66 E-value=4.4e-15 Score=153.90 Aligned_cols=170 Identities=15% Similarity=0.219 Sum_probs=105.7
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
....++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..++++++..|++..++..+|.++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 45566677777777777777777777777777777777777777777777777777777777777777766666666666
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
...|++++|+.++++++.. .|. ....+..+|.++...|++++|+.+++++++..|.+ .
T Consensus 87 ~~~~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~---~ 144 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA----NPI---------------NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNE---G 144 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---H
T ss_pred HHhcCHHHHHHHHHHHHhc----CcH---------------hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccc---h
Confidence 6666666666666666665 333 12234445555555555555555555555555544 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
.++..+|.++...|++++|+.++++++...|+
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 55555555555555555555555555544443
No 85
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=9.8e-16 Score=188.98 Aligned_cols=288 Identities=13% Similarity=0.089 Sum_probs=186.5
Q ss_pred hhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-
Q psy8682 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDL---PSAILYLEAAAKQEPDNAEVWLSLGISLAENE- 1653 (1956)
Q Consensus 1578 L~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~Gdy---dEAIe~fekALeldPdnaeAl~~LA~ay~~lG- 1653 (1956)
.+++++|+.. |.++.+ +.++. +++.+|.++...|+. ++|+..|+++++. ++.+++.+|.++...+
T Consensus 16 ~g~~~~A~~~--~~~aa~--~g~~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 16 RGDTVTAQQN--YQQLAE--LGYSE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHH--HHHHHH--HTCCT----GGGTCC-------------------------------CHHHHHHHHHTC--
T ss_pred CCCHHHHHHH--HHHHHH--CCCHH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCC
Confidence 3567777776 666653 34444 677788887777777 7888888888755 6677788888666655
Q ss_pred ----ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH---HHHHHHHHHHhcCCCCCCCch-----hhhhhc----
Q psy8682 1654 ----QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH---DALDTLKDKIRPGQESNPRPS-----AYKADA---- 1717 (1956)
Q Consensus 1654 ----dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd---EALe~leKALelg~e~dPd~e-----ay~~Ll---- 1717 (1956)
++++|+.+|+++++.. ++.+++.||.+|...+... ++...+.++... .+|... .|....
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~---g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA---GYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH---TCTTHHHHHHHHHHHHTCGGG
T ss_pred CCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCccc
Confidence 6778888888887743 3336677777776655432 233333333322 011100 000000
Q ss_pred --------CcchhhhhHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc----CCHHHH
Q psy8682 1718 --------LPSKLTRLANHTLTFRSPLSSRE---IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS----DEYDKA 1782 (1956)
Q Consensus 1718 --------~~~Kl~e~a~a~lnLA~ay~~lG---dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l----GdyeEA 1782 (1956)
...-......+++.+|.+|...| ++++|+.+|+++.+..+.. +..++.+|.+|... +++++|
T Consensus 160 ~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~---a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT---AQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC---HHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH---HHHHHHHHHHHhCCCCCCCCHHHH
Confidence 00000123347888999999999 9999999999999999887 77778999998665 799999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHH-H--HHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-----CHHHHHHHH
Q psy8682 1783 VDCFRSALQVRPDDSRLWNRLGAS-L--ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG-----ANTQAVEHF 1854 (1956)
Q Consensus 1783 ie~fekALel~PdnaeA~~nLG~a-y--~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG-----dyEEAie~y 1854 (1956)
+.+|+++. |.++.++++||.+ + ...+++++|+.+|+++.+. +++.++++||.+|. .| ++++|+.+|
T Consensus 237 ~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~ 310 (452)
T 3e4b_A 237 QALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHF 310 (452)
T ss_dssp HHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHH
T ss_pred HHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHH
Confidence 99999987 8899999999998 4 4689999999999999865 47899999999998 56 999999999
Q ss_pred HHHHHhcCCChhchhccccchhh----hcccHHHHHHHHHhccc
Q psy8682 1855 LTALNQQAATHDGLTPHGLEPRA----VKEMSDSIWYSLRGFHP 1894 (1956)
Q Consensus 1855 ekALeLdPdn~dA~~~LG~l~~~----lg~~seAIws~Lr~Al~ 1894 (1956)
+++. ++++.+++++|.+|.. ..++.+++ .+++++..
T Consensus 311 ~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~-~~~~~Aa~ 350 (452)
T 3e4b_A 311 EKAV---GREVAADYYLGQIYRRGYLGKVYPQKAL-DHLLTAAR 350 (452)
T ss_dssp HTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHH-HHHHHHHT
T ss_pred HHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHH-HHHHHHHh
Confidence 9998 8899999999988865 23555565 66777655
No 86
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.65 E-value=1e-16 Score=168.34 Aligned_cols=147 Identities=13% Similarity=0.068 Sum_probs=134.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1731 nLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
.||.++...|++++|+..+++++...|++ +..++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|...
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~---~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 78 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQK---SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELE 78 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHH---HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCccc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 37888999999999999999999998887 888999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHhcCCChhchhccccchhhhcc
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH-FLTALNQQAATHDGLTPHGLEPRAVKE 1880 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~-yekALeLdPdn~dA~~~LG~l~~~lg~ 1880 (1956)
|++++|+.+|+++++++|+++.+++++|.+|..+|++++|... +++|++++|+++.++..++.++...|+
T Consensus 79 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 79 ENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred CchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999887765 599999999999999998888777664
No 87
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.63 E-value=4.8e-15 Score=163.96 Aligned_cols=213 Identities=15% Similarity=0.084 Sum_probs=169.3
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-------
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQE--------PDNAEVWLSLGISLAENEQDPQAIAALSKCLSI------- 1668 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeld--------PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL------- 1668 (1956)
.+.++..+|.++...|++++|+.+|+++++.. |....++..+|.++...|++++|+.+|++++++
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999999999873 556779999999999999999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1669 -EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1669 -dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
+|....++..+|.+|...|++++|+.+++++++. +....... .+....++..+|.++...|++++|+.
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~----------~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 190 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI----------YATRLGPD-DPNVAKTKNNLASCYLKQGKYQDAET 190 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------HHHHSCTT-CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4666788999999999999999999999999987 33332111 34567788999999999999999999
Q ss_pred HHHHHHHhCCC------CCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Q psy8682 1748 LYLNAARQCPS------QSIDPDVQNGLGVLFNLSDE------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1748 ~LekALel~P~------n~~~a~a~~~LG~ly~~lGd------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE 1815 (1956)
+++++++..+. .......+..++..+...+. +.++...++.+....|....++..+|.+|..+|++++
T Consensus 191 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 270 (283)
T 3edt_B 191 LYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEA 270 (283)
T ss_dssp HHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999987321 11225567777777665544 3344444444333445667889999999999999999
Q ss_pred HHHHHHHHHhhC
Q psy8682 1816 AVEAYHTALQLS 1827 (1956)
Q Consensus 1816 Aie~yeKALeL~ 1827 (1956)
|+.+|+++++..
T Consensus 271 A~~~~~~al~~~ 282 (283)
T 3edt_B 271 AHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHHhh
Confidence 999999998753
No 88
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.62 E-value=1.3e-14 Score=160.98 Aligned_cols=209 Identities=17% Similarity=0.126 Sum_probs=163.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH---HHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE---ALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnae---Al~ 1677 (1956)
.+..++.+|..++..|++++|+..|++++...|.+ ..+++.+|.+|...|++++|+..|+++++.+|++.. +++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 46789999999999999999999999999999876 478999999999999999999999999999998864 788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.+|.++...+.. .+ . .+..++..+...|++++|+..|+++++..|
T Consensus 83 ~~g~~~~~~~~~-----~~----~--------------------------~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL----Q--------------------------GFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp HHHHHHHHHHC-------------------------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHhhhhh-----hh----h--------------------------hhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 999988776532 11 1 123345677788999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH---HHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV---RAR 1834 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna---eA~ 1834 (1956)
++.....+...++.+... .......+|.+|...|++++|+..|+++++..|+++ .++
T Consensus 128 ~~~~a~~a~~~l~~~~~~--------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 187 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLKDR--------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDAL 187 (225)
T ss_dssp TCTTHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHH
Confidence 982222222233322211 112346789999999999999999999999999875 689
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhc
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDG 1867 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA 1867 (1956)
+.+|.++.++|++++|+..++++....|++.+-
T Consensus 188 ~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 188 PLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 999999999999999999999999999987653
No 89
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.61 E-value=7.7e-15 Score=161.46 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=65.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLS----------------LGISLAENEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~----------------LA~ay~~lGdyeEALe~yeKALe 1667 (1956)
+++.++..|..++..|++++|+..|+++++.+|+++.+++. +|.+|...|++++|+..|+++++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 82 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ 82 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45678888999999999999999999999999988888887 55555555555555555555555
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1668 LdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++|++..++..+|.+|...|++++|+.+|++++++
T Consensus 83 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 83 KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 55555555555555555555555555555554444
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.60 E-value=3.7e-14 Score=157.43 Aligned_cols=211 Identities=12% Similarity=0.013 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhh
Q psy8682 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714 (1956)
Q Consensus 1638 naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~ 1714 (1956)
.+..++.+|..+...|++++|+..|+++++..|++. .+++.+|.+|...|++++|+..|+++++. .|+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~----~P~----- 73 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL----NPT----- 73 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT-----
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----CcC-----
Confidence 345666777777777777777777777777777764 46667777777777777777777777766 555
Q ss_pred hhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q psy8682 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794 (1956)
Q Consensus 1715 ~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P 1794 (1956)
.+....+++.+|.++...+.. . ...+..++..+...|++++|+..|+++++..|
T Consensus 74 -------~~~~~~a~~~~g~~~~~~~~~----------------~---~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P 127 (225)
T 2yhc_A 74 -------HPNIDYVMYMRGLTNMALDDS----------------A---LQGFFGVDRSDRDPQQARAAFSDFSKLVRGYP 127 (225)
T ss_dssp -------CTTHHHHHHHHHHHHHHHHC---------------------------------CCHHHHHHHHHHHHHHTTCT
T ss_pred -------CCcHHHHHHHHHHHHHhhhhh----------------h---hhhhhccchhhcCcHHHHHHHHHHHHHHHHCc
Confidence 223445666666666554421 1 12233445555567788888888888888888
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh---hchhcc
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH---DGLTPH 1871 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~---dA~~~L 1871 (1956)
++..++..+..+.... .......+.+|.+|...|++++|+..|+++++..|+++ +++..+
T Consensus 128 ~~~~a~~a~~~l~~~~-----------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l 190 (225)
T 2yhc_A 128 NSQYTTDATKRLVFLK-----------------DRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLM 190 (225)
T ss_dssp TCTTHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHH
Confidence 8765543322211110 01122446789999999999999999999999999986 689999
Q ss_pred ccchhhhcccHHHHHHHHHhccccCCCCcc
Q psy8682 1872 GLEPRAVKEMSDSIWYSLRGFHPPFGDKLP 1901 (1956)
Q Consensus 1872 G~l~~~lg~~seAIws~Lr~Al~l~gr~~~ 1901 (1956)
|.++..+|++.+++ ..++.+....+...+
T Consensus 191 ~~~~~~~g~~~~A~-~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 191 ENAYRQMQMNAQAE-KVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHTTCHHHHH-HHHHHHHHCCSCCCC
T ss_pred HHHHHHcCCcHHHH-HHHHHHHhhCCCchh
Confidence 99999999999887 777777666665543
No 91
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.60 E-value=2.8e-14 Score=175.96 Aligned_cols=272 Identities=11% Similarity=0.071 Sum_probs=215.4
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQE-PDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeld-PdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
+++++|+.. |.++.. +.++. +++.+|..|...+...++...++...... +.++.+++.+|.+|...+.+++
T Consensus 88 ~~~~~A~~~--~~~Aa~--~g~~~----A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~ 159 (452)
T 3e4b_A 88 AEHHEAESL--LKKAFA--NGEGN----TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQ 159 (452)
T ss_dssp HHHHHHHHH--HHHHHH--TTCSS----CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGG
T ss_pred cCHHHHHHH--HHHHHH--CCCHH----HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCccc
Confidence 477888887 888875 44555 88999999998776555444444333322 3567889999999999986554
Q ss_pred HH----HHHHHHHHhCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1658 AI----AALSKCLSIEPKNLEALMAISICFTNEA---CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1658 AL----e~yeKALeLdPdnaeAl~~LA~aY~~lG---dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
++ .+++.+...+|. +++.||.+|...| ++++|+..|+++.+. .|. .+..++
T Consensus 160 ~~~~a~~~~~~a~~~~~~---a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~---------------~a~~~~ 217 (452)
T 3e4b_A 160 HLDDVERICKAALNTTDI---CYVELATVYQKKQQPEQQAELLKQMEAGVSR----GTV---------------TAQRVD 217 (452)
T ss_dssp GHHHHHHHHHHHTTTCTT---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCS---------------CHHHHH
T ss_pred CHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCH---------------HHHHHH
Confidence 44 445555554554 9999999999999 999999999999998 444 334457
Q ss_pred HHHHHHHhc----CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1731 TFRSPLSSR----EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL-F--NLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1731 nLA~ay~~l----GdyeEAle~LekALel~P~n~~~a~a~~~LG~l-y--~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
++|.+|... +++++|+.+|+++. |.+ +.+++.+|.+ + ...+++++|+.+|+++.+. .++.++++|
T Consensus 218 ~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~---~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~L 289 (452)
T 3e4b_A 218 SVARVLGDATLGTPDEKTAQALLEKIA---PGY---PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLL 289 (452)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHG---GGS---THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHHHHc---CCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHH
Confidence 888998765 79999999999998 777 8899999998 4 5789999999999999865 589999999
Q ss_pred HHHHHHCC-----ChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1804 GASLANGN-----RPEEAVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1804 G~ay~qlG-----ryeEAie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
|.+|. .| ++++|+.+|+++. +.++.++++||.+|.. ..++++|+.+|+++.+ +.++.+.+++|.+
T Consensus 290 g~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~ 363 (452)
T 3e4b_A 290 GKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQL 363 (452)
T ss_dssp HHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHH
T ss_pred HHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHH
Confidence 99998 55 9999999999998 8999999999999887 4499999999999987 5678899999998
Q ss_pred hhh----hcccHHHHHHHHHhcccc
Q psy8682 1875 PRA----VKEMSDSIWYSLRGFHPP 1895 (1956)
Q Consensus 1875 ~~~----lg~~seAIws~Lr~Al~l 1895 (1956)
|.. ..+...++ .++++|...
T Consensus 364 y~~G~g~~~d~~~A~-~~~~~A~~~ 387 (452)
T 3e4b_A 364 FSQGKGTKPDPLNAY-VFSQLAKAQ 387 (452)
T ss_dssp HHSCTTBCCCHHHHH-HHHHHHHTT
T ss_pred HHhCCCCCCCHHHHH-HHHHHHHHC
Confidence 864 23444454 777777554
No 92
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.59 E-value=6.1e-15 Score=154.75 Aligned_cols=147 Identities=14% Similarity=0.183 Sum_probs=132.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q psy8682 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P 1757 (1956)
.||.++...|++++|+..+++++.. + +.....++.+|.+|...|++++|+.+|+++++++|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~----~---------------p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p 62 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS----P---------------RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE 62 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS----H---------------HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc----C---------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4788889999999999999999888 3 33555678899999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHH-HHHHHhhCCCcHHHHHH
Q psy8682 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA-YHTALQLSPGFVRARYN 1836 (1956)
Q Consensus 1758 ~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~-yeKALeL~PdnaeA~~~ 1836 (1956)
++ +.++..+|.+|..+|++++|+.+|+++++++|+++.++.++|.+|...|++++|... ++++++++|+++.++..
T Consensus 63 ~~---~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l 139 (150)
T 4ga2_A 63 RD---PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKL 139 (150)
T ss_dssp TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHH
T ss_pred CC---HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHH
Confidence 99 999999999999999999999999999999999999999999999999999887766 59999999999999999
Q ss_pred HHHHHHHcCC
Q psy8682 1837 LGITCVHLGA 1846 (1956)
Q Consensus 1837 LA~ay~klGd 1846 (1956)
++.++...|+
T Consensus 140 ~~~ll~~~G~ 149 (150)
T 4ga2_A 140 KEQLLDCEGE 149 (150)
T ss_dssp HHHHHHTCCC
T ss_pred HHHHHHHhCc
Confidence 9999988885
No 93
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.59 E-value=6.9e-14 Score=165.60 Aligned_cols=231 Identities=13% Similarity=0.002 Sum_probs=207.6
Q ss_pred HHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHc---
Q psy8682 1582 SRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG--DLPSAILYLEAAAKQEPDNAEVWLSLGISL----AEN--- 1652 (1956)
Q Consensus 1582 eeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G--dydEAIe~fekALeldPdnaeAl~~LA~ay----~~l--- 1652 (1956)
++|+.. +++++.++|++.. +|+.++.++...| ++++++.++.+++..+|++..+|+..+.++ ...
T Consensus 50 ~~aL~~--t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 50 ERALHI--TELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp HHHHHH--HHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHH--HHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhcccc
Confidence 578877 8888888776554 9999999999999 999999999999999999999999999999 777
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLH--DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd--EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~l 1730 (1956)
+++++++.++.++++.+|.+..+|...+.++...|.++ ++++++.++++. +|+ ...++.
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~----d~~---------------N~sAW~ 184 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT----DLK---------------NNSAWS 184 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH----CTT---------------CHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh----CCC---------------CHHHHH
Confidence 89999999999999999999999999999999999999 999999999999 776 344567
Q ss_pred HHHHHHHhcCC------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhC---CCCHHHH
Q psy8682 1731 TFRSPLSSREI------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK-AVDCFRSALQVR---PDDSRLW 1800 (1956)
Q Consensus 1731 nLA~ay~~lGd------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE-Aie~fekALel~---PdnaeA~ 1800 (1956)
..+.++...++ ++++++++.+++..+|.+ ..+|+.++.++...|+..+ ....+.+++.+. +.++.++
T Consensus 185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n---~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al 261 (306)
T 3dra_A 185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN---PSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFAL 261 (306)
T ss_dssp HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC---HHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHH
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC---ccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHH
Confidence 77788888877 999999999999999999 9999999999999998555 555777777766 8899999
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHh-hCCCcHHHHHHHHHH
Q psy8682 1801 NRLGASLANGNRPEEAVEAYHTALQ-LSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1801 ~nLG~ay~qlGryeEAie~yeKALe-L~PdnaeA~~~LA~a 1840 (1956)
..+|.+|.+.|+.++|+++|+++.+ .+|-....|...+..
T Consensus 262 ~~la~~~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 262 ETLAKIYTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHT
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHhccChHHHHHHHHHHhh
Confidence 9999999999999999999999997 799999999877654
No 94
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.59 E-value=1.6e-14 Score=158.80 Aligned_cols=185 Identities=11% Similarity=0.096 Sum_probs=146.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1672 naeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd-~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
..+.++..|..+...|++++|+..|+++++. +|+ ...+..................+|.++...|++++|+..|+
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4556778888888888888888888888888 665 11111100000011222333449999999999999999999
Q ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC--hHHHHHHHHHHHhhCC
Q psy8682 1751 NAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR--PEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1751 kALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr--yeEAie~yeKALeL~P 1828 (1956)
++++++|++ +.++..+|.++...|++++|+.+|+++++++|+++.+++++|.+|...|+ ...+...|++++...|
T Consensus 79 ~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (208)
T 3urz_A 79 ELLQKAPNN---VDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK 155 (208)
T ss_dssp HHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH
T ss_pred HHHHHCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc
Confidence 999999999 99999999999999999999999999999999999999999999987764 4567778888764333
Q ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC
Q psy8682 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1829 dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn 1864 (1956)
...+++.+|.++..+|++++|+.+|+++++++|+.
T Consensus 156 -~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 156 -MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp -HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred -hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 23478889999999999999999999999999984
No 95
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.57 E-value=1.1e-14 Score=169.45 Aligned_cols=210 Identities=13% Similarity=0.092 Sum_probs=152.3
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTL 1696 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~-lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~l 1696 (1956)
.|++++|..+++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++|+.+|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~----------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTS----------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcccc----------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 467788888888887765532 111 47788888777765 45677788888888888
Q ss_pred HHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHH
Q psy8682 1697 KDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLF 1773 (1956)
Q Consensus 1697 eKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly 1773 (1956)
.+++.+ +..... ....+.++.++|.+|...|++++|+.+|++++++.+.. .....++.++|.+|
T Consensus 60 ~~al~~----------~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~ 126 (307)
T 2ifu_A 60 LQEAEA----------HANNRS---LFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM 126 (307)
T ss_dssp HHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHH----------HHHcCC---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 888877 333221 12445677788888888888888888888888775432 01245677888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHHHHHHH
Q psy8682 1774 NLSDEYDKAVDCFRSALQVRPDD------SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYNLGITC 1841 (1956)
Q Consensus 1774 ~~lGdyeEAie~fekALel~Pdn------aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~LA~ay 1841 (1956)
.. |++++|+.+|++++.+.+.. ..++.++|.+|..+|++++|+.+|++++.+.|.+ ..++..+|.++
T Consensus 127 ~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~ 205 (307)
T 2ifu_A 127 EP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQ 205 (307)
T ss_dssp TT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH
Confidence 77 88888888888888776543 4677888888888888888888888888765432 34677788888
Q ss_pred HHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1842 VHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1842 ~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
..+|++++|+.+|++++ ++|+...
T Consensus 206 ~~~g~~~~A~~~~~~al-~~p~~~~ 229 (307)
T 2ifu_A 206 LHRADYVAAQKCVRESY-SIPGFSG 229 (307)
T ss_dssp HHTTCHHHHHHHHHHHT-TSTTSTT
T ss_pred HHcCCHHHHHHHHHHHh-CCCCCCC
Confidence 88888888888888888 8887654
No 96
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.55 E-value=1.7e-14 Score=147.60 Aligned_cols=119 Identities=15% Similarity=0.212 Sum_probs=96.6
Q ss_pred HHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHH
Q psy8682 1753 ARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832 (1956)
Q Consensus 1753 Lel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdnae 1832 (1956)
..++|+. +..+..+|..|+..|+|++|+.+|+++++++|.++.++.++|.+|..+|++++|+..|+++++++|++..
T Consensus 6 a~inP~~---a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~ 82 (126)
T 4gco_A 6 AYINPEL---AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIK 82 (126)
T ss_dssp -CCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhH
Confidence 3456666 7778888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1833 A~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
+++++|.++..+|++++|+.+|+++++++|++.+++..++.+
T Consensus 83 a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 83 GYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888888888888888888888877766543
No 97
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.55 E-value=7.5e-13 Score=158.29 Aligned_cols=236 Identities=15% Similarity=0.109 Sum_probs=203.1
Q ss_pred HHHHcCChH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1614 EKLRQGDLP-SAILYLEAAAKQEPDNAEVWLSLGISLAENEQ----------DPQAIAALSKCLSIEPKNLEALMAISIC 1682 (1956)
Q Consensus 1614 aylk~Gdyd-EAIe~fekALeldPdnaeAl~~LA~ay~~lGd----------yeEALe~yeKALeLdPdnaeAl~~LA~a 1682 (1956)
...+.|.++ +|+.++.+++..+|++..+|+..+.++...+. +++++.++..++..+|.+..+|...+.+
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wl 117 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 117 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 334566665 89999999999999999999999999988776 7899999999999999999999999999
Q ss_pred HHHcCC--HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCC
Q psy8682 1683 FTNEAC--LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREI-HQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1683 Y~~lGd--ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGd-yeEAle~LekALel~P~n 1759 (1956)
+...+. +++++.++.++++. +|+ ...++...+.++...|. ++++++++.++++.+|.+
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~----dpr---------------Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N 178 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEA----DER---------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN 178 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC
T ss_pred HhccCcccHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC
Confidence 999994 99999999999999 777 34456777888888888 699999999999999999
Q ss_pred CCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-----------CChH
Q psy8682 1760 SIDPDVQNGLGVLFNLS--------------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG-----------NRPE 1814 (1956)
Q Consensus 1760 ~~~a~a~~~LG~ly~~l--------------GdyeEAie~fekALel~PdnaeA~~nLG~ay~ql-----------Grye 1814 (1956)
..+|..++.++... +.++++++++.+++..+|++..+|+.+..++... +.++
T Consensus 179 ---~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~ 255 (331)
T 3dss_A 179 ---YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQ 255 (331)
T ss_dssp ---HHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHH
Confidence 99999999998877 5689999999999999999999998776666655 4589
Q ss_pred HHHHHHHHHHhhCCCcHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1815 EAVEAYHTALQLSPGFVRARYNLGITCV---HLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~~LA~ay~---klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
++++++++++++.|++..++..++.+.. ..|..+++..++.+.++++|....-|..+
T Consensus 256 ~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~ 315 (331)
T 3dss_A 256 SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 315 (331)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred HHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHH
Confidence 9999999999999999766555554433 35788999999999999999865544433
No 98
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.52 E-value=1.1e-13 Score=161.02 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=179.1
Q ss_pred hhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Q psy8682 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLR-QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657 (1956)
Q Consensus 1579 ~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk-~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeE 1657 (1956)
++|++|... ++++.+..+.. ++. .+++++|+.+|.++ |.+|...|++++
T Consensus 5 ~~~~eA~~~--~~~a~k~~~~~--------------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~ 54 (307)
T 2ifu_A 5 QKISEAHEH--IAKAEKYLKTS--------------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQ 54 (307)
T ss_dssp HHHHHHHHH--HHHHHHHHCCC--------------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHH
T ss_pred chHHHHHHH--HHHHHHHcccc--------------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHH
Confidence 566777766 66666554421 111 58899999999876 668889999999
Q ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHH
Q psy8682 1658 AIAALSKCLSIEPKN------LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731 (1956)
Q Consensus 1658 ALe~yeKALeLdPdn------aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ln 1731 (1956)
|+.+|.+++++.+.. ..++.++|.+|..+|++++|+.+|++++.+ +..... ....+.++.+
T Consensus 55 A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l----------~~~~g~---~~~~a~~~~~ 121 (307)
T 2ifu_A 55 AKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVM----------YVENGT---PDTAAMALDR 121 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH----------HHTTTC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----------HHHcCC---HHHHHHHHHH
Confidence 999999999886432 457889999999999999999999999998 433321 1245678889
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHH
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQS---IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------SRLWNR 1802 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~---~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------aeA~~n 1802 (1956)
+|.+|.. |++++|+.+|++++++.+... ....++.++|.+|..+|+|++|+.+|++++.+.+.+ ..++..
T Consensus 122 lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 122 AGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHH
Confidence 9999999 999999999999999876531 125688999999999999999999999999986543 357889
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHH-----HHHHHHHHHHHcCCHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVR-----ARYNLGITCVHLGANTQAVE 1852 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~Pdnae-----A~~~LA~ay~klGdyEEAie 1852 (1956)
+|.++..+|++++|+.+|++++ ++|.... ....++.++ ..|+.+.+..
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 9999999999999999999999 9987532 344555555 5666554433
No 99
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.52 E-value=5.5e-13 Score=178.94 Aligned_cols=223 Identities=16% Similarity=0.129 Sum_probs=190.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
...+|+.+|.++...|++++|+..|.++ +++..+..+|.++.+.|++++|+++|..|.+..++. .+-..+|.+|
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHH
Confidence 4569999999999999999999999885 789999999999999999999999999999988542 2334699999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a 1763 (1956)
.+++++++ ++.| +. .++ ...+..+|..+...|+|++|+.+|.++ .
T Consensus 1178 AKl~rlee-le~f---I~-----~~n----------------~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~----- 1222 (1630)
T 1xi4_A 1178 AKTNRLAE-LEEF---IN-----GPN----------------NAHIQQVGDRCYDEKMYDAAKLLYNNV-----S----- 1222 (1630)
T ss_pred HhhcCHHH-HHHH---Hh-----CCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHhh-----h-----
Confidence 99999885 4444 22 222 124567999999999999999999996 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.|..+|.+|.++|++++|++++++| .+..+|...+.++...|+|..|..+... +..+ ++.+..++..|..
T Consensus 1223 -ny~rLA~tLvkLge~q~AIEaarKA-----~n~~aWkev~~acve~~Ef~LA~~cgl~-Iiv~---~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1223 -NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVH---ADELEELINYYQD 1292 (1630)
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHh-----CCHHHHHHHHHHHhhhhHHHHHHHHHHh-hhcC---HHHHHHHHHHHHH
Confidence 4899999999999999999999998 6679999999999999999999998874 4444 4556689999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
.|.+++|+.++++++.+++.+...+..+|.++.+
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence 9999999999999999999999999899888853
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.52 E-value=1.8e-13 Score=172.14 Aligned_cols=165 Identities=18% Similarity=0.077 Sum_probs=140.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
.|++++|+..|+++++. +|+ ...++..+|.++...|++++|+..|+++++.+|++ ..+
T Consensus 2 ~g~~~~A~~~~~~al~~----~p~---------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~---~~~ 59 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH----RPQ---------------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH---PEA 59 (568)
T ss_dssp -----------------------C---------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTC---HHH
T ss_pred CccHHHHHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Confidence 47899999999999998 665 45678899999999999999999999999999998 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL- 1844 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl- 1844 (1956)
+..+|.+|..+|++++|+.+|+++++++|++..++.++|.+|..+|++++|+.+|+++++++|++..++.++|.++..+
T Consensus 60 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~ 139 (568)
T 2vsy_A 60 VARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLC 139 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHhcCCChhchhccc
Q psy8682 1845 --GANTQAVEHFLTALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1845 --GdyEEAie~yekALeLdPdn~dA~~~LG 1872 (1956)
|++++|+..|+++++.+|++...+..++
T Consensus 140 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 140 DWRALDVLSAQVRAAVAQGVGAVEPFAFLS 169 (568)
T ss_dssp CCTTHHHHHHHHHHHHHHTCCCSCHHHHTT
T ss_pred ccccHHHHHHHHHHHHhcCCcccChHHHhC
Confidence 9999999999999999999988888777
No 101
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.51 E-value=3.1e-13 Score=156.44 Aligned_cols=168 Identities=12% Similarity=0.120 Sum_probs=136.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|.+...++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++.. +|+
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~----~p~------ 183 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ----DQD------ 183 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG----GCS------
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh----hcc------
Confidence 7888889999999999999999999999999999999999999999999999999999999988887 565
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd 1795 (1956)
........+..+...++.++|+..|++++..+|++ ..+++.+|.++...|++++|+..|+++++.+|+
T Consensus 184 ---------~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~---~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 184 ---------TRYQGLVAQIELLXQAADTPEIQQLQQQVAENPED---AALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp ---------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred ---------hHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCcc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 11223445555666777777888888888888887 778888888888888888888888888888877
Q ss_pred C--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1796 D--SRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1796 n--aeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+ ..++..+|.++..+|+.++|+..|++++.
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 7 77778888888888888888877777764
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.50 E-value=3.5e-13 Score=137.91 Aligned_cols=116 Identities=17% Similarity=0.155 Sum_probs=112.4
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
|+.+.++.++|..++..|++++|+..|+++++++|.+ +.++..+|.+|..+|++++|+..|+++++++|+++.+|..
T Consensus 10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPEN---AILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 5678889999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|.++..+|++++|+..|+++++++|++..++..|+.++
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 999999999999999999999999999999999998764
No 103
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.49 E-value=3.6e-13 Score=155.91 Aligned_cols=170 Identities=15% Similarity=0.126 Sum_probs=152.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1669 dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
.|++...+..+|..+...|++++|+..|+++++. +|+ ...+++.+|.++...|++++|+..
T Consensus 113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~---------------~~~a~~~la~~~~~~g~~~~A~~~ 173 (287)
T 3qou_A 113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQL----SNQ---------------NGEIGLLLAETLIALNRSEDAEAV 173 (287)
T ss_dssp SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTS---------------CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----CCc---------------chhHHHHHHHHHHHCCCHHHHHHH
Confidence 3888889999999999999999999999999999 776 456778899999999999999999
Q ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC
Q psy8682 1749 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828 (1956)
Q Consensus 1749 LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P 1828 (1956)
+++++..+|+. .......+..+...++.++|+..|++++..+|+++.+++++|.++...|++++|+..|+++++.+|
T Consensus 174 l~~~~~~~p~~---~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p 250 (287)
T 3qou_A 174 LXTIPLQDQDT---RYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDL 250 (287)
T ss_dssp HTTSCGGGCSH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHhCchhhcch---HHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccc
Confidence 99999999976 666667777788888999999999999999999999999999999999999999999999999999
Q ss_pred Cc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1829 GF--VRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1829 dn--aeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
++ ..++.+++.++..+|+.++|...|++++..
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 88 889999999999999999999999998863
No 104
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.49 E-value=3.2e-13 Score=169.92 Aligned_cols=163 Identities=18% Similarity=0.179 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1619 GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leK 1698 (1956)
|++++|+..|+++++.+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.+|..+|++++|+.+|++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 82 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ 82 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45555666666666555655555666666666666666666666666655555555555555555555555555555555
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc--
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-- 1776 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-- 1776 (1956)
+++. +|+ ...++.++|.++...|++++|+..|+++++.+|++ ..++..+|.++..+
T Consensus 83 al~~----~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~~~ 140 (568)
T 2vsy_A 83 ASDA----APE---------------HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE---PYITAQLLNWRRRLCD 140 (568)
T ss_dssp HHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTC
T ss_pred HHhc----CCC---------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhhc
Confidence 5555 333 22334445555555555555555555555555544 44555555555555
Q ss_pred -CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1777 -DEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1777 -GdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
|++++|+..|+++++.+|.+...+..+
T Consensus 141 ~g~~~~A~~~~~~al~~~p~~~~~~~~l 168 (568)
T 2vsy_A 141 WRALDVLSAQVRAAVAQGVGAVEPFAFL 168 (568)
T ss_dssp CTTHHHHHHHHHHHHHHTCCCSCHHHHT
T ss_pred cccHHHHHHHHHHHHhcCCcccChHHHh
Confidence 555555555555555555444443333
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=1.8e-13 Score=145.91 Aligned_cols=63 Identities=14% Similarity=0.065 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1640 eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
..++.+|..+...|++++|+..|+++++.+|++..+++.+|.++...|++++|+..+++++..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 345555555555555555555555555555555555555555555555555555555555444
No 106
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.48 E-value=1.7e-13 Score=146.21 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~ 1685 (1956)
+.++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|++++...| ++..+..++.+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELH 85 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHH
Confidence 46778888888888888888888888888888888888888888888888888888888888887 66544333322110
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHH
Q psy8682 1686 EACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765 (1956)
Q Consensus 1686 lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a 1765 (1956)
. .+...+|+..++++++.+|++ +.+
T Consensus 86 ~----------------------------------------------------~~~~~~a~~~~~~al~~~P~~---~~~ 110 (176)
T 2r5s_A 86 Q----------------------------------------------------QAAESPELKRLEQELAANPDN---FEL 110 (176)
T ss_dssp H----------------------------------------------------HHTSCHHHHHHHHHHHHSTTC---HHH
T ss_pred h----------------------------------------------------hcccchHHHHHHHHHHhCCCC---HHH
Confidence 0 000112456666666677766 667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQVRPDD--SRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel~Pdn--aeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
++.+|.++...|++++|+..|+++++.+|+. ..++..+|.++..+|+.++|+..|++++.
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 7777777777777777777777777776654 44666777777777777777777766653
No 107
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.47 E-value=1.8e-12 Score=126.66 Aligned_cols=134 Identities=24% Similarity=0.415 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1727 ~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
.+++.+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..+++++...|.+..++..+|.+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 78 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNA 78 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHH
Confidence 357789999999999999999999999999988 89999999999999999999999999999999999999999999
Q ss_pred HHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1807 LANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1807 y~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+...|++++|+..+++++...|.+..++..+|.++...|++++|+.+|++++..+|+
T Consensus 79 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 79 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 999999999999999999999999999999999999999999999999999999986
No 108
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.46 E-value=4.5e-12 Score=152.46 Aligned_cols=230 Identities=10% Similarity=0.011 Sum_probs=193.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-CHHH
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE-QDPQAIAALSKCLSIEPKNLEALMAISICFTNE-A-CLHD 1691 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG-dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l-G-dydE 1691 (1956)
....+..++|+.++.+++.++|++..+|+..+.++...| .+++++..+.+++..+|++..+|+..+.++... + ++++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 334455679999999999999999999999999999999 599999999999999999999999999999998 8 8999
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCCCCH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQ--------QVLSLYLNAARQCPSQSIDP 1763 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdye--------EAle~LekALel~P~n~~~a 1763 (1956)
++.++.++++. +|+ ...++...+.++...|.++ ++++++.++++.+|.+ .
T Consensus 144 EL~~~~k~L~~----dpk---------------Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N---~ 201 (349)
T 3q7a_A 144 EIEYIHGSLLP----DPK---------------NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRN---N 201 (349)
T ss_dssp HHHHHHHHTSS----CTT---------------CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTC---H
T ss_pred HHHHHHHHHHh----CCC---------------CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCC---H
Confidence 99999999999 777 3345566666666666666 9999999999999999 9
Q ss_pred HHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh--------------------HHH
Q psy8682 1764 DVQNGLGVLFNLSDE-------YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP--------------------EEA 1816 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGd-------yeEAie~fekALel~PdnaeA~~nLG~ay~qlGry--------------------eEA 1816 (1956)
.+|..++.++...++ ++++++++++++.++|++..+|+.+..++...|+. .+-
T Consensus 202 SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3q7a_A 202 SAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV 281 (349)
T ss_dssp HHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence 999999999999987 79999999999999999999999999999988875 122
Q ss_pred HHHHHHHHhhC------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HhcCCChh
Q psy8682 1817 VEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL-NQQAATHD 1866 (1956)
Q Consensus 1817 ie~yeKALeL~------PdnaeA~~~LA~ay~klGdyEEAie~yekAL-eLdPdn~d 1866 (1956)
.......+... +....++..|+.+|...|+.++|+++|+... +.+|-...
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~ 338 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAG 338 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHH
Confidence 22222222222 4678899999999999999999999999986 56775333
No 109
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.46 E-value=5.8e-14 Score=149.45 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=111.1
Q ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1745 VLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1745 Ale~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
+-..++++++++|++ ..+++.+|.++...|++++|+..|++++.++|+++.+|.++|.+|..+|++++|+.+|++++
T Consensus 21 ~~~~l~~al~l~p~~---~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al 97 (151)
T 3gyz_A 21 SGATLKDINAIPDDM---MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97 (151)
T ss_dssp TSCCTGGGCCSCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHhCCCHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 334566778888988 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1825 eL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+++|+++.+++++|.+|..+|++++|+.+|++++++.|+.+
T Consensus 98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999854
No 110
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.45 E-value=2.9e-12 Score=141.73 Aligned_cols=174 Identities=13% Similarity=0.090 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHH
Q psy8682 1623 SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA----CLHDALDTLKD 1698 (1956)
Q Consensus 1623 EAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG----dydEALe~leK 1698 (1956)
+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. .++.+++.||.+|.. + ++++|+.+|++
T Consensus 4 eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~ 78 (212)
T 3rjv_A 4 EPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEK 78 (212)
T ss_dssp CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHH
Confidence 455666666553 55666666666666666666666666666553 456666666666665 4 56666666666
Q ss_pred HHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC--CCCCCHHHHHHHHHH
Q psy8682 1699 KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS----REIHQQVLSLYLNAARQCP--SQSIDPDVQNGLGVL 1772 (1956)
Q Consensus 1699 ALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~----lGdyeEAle~LekALel~P--~n~~~a~a~~~LG~l 1772 (1956)
+.+. ..+.+++++|.+|.. .+++++|+.+|+++++..+ .. +.+++.||.+
T Consensus 79 A~~~---------------------g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~---~~a~~~Lg~~ 134 (212)
T 3rjv_A 79 AVEA---------------------GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAA---VDAQMLLGLI 134 (212)
T ss_dssp HHHT---------------------TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHH---HHHHHHHHHH
T ss_pred HHHC---------------------CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcch---HHHHHHHHHH
Confidence 6544 123345555666655 5566666666666665554 12 4556666666
Q ss_pred HHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC-C-----ChHHHHHHHHHHHhh
Q psy8682 1773 FNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG-N-----RPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1773 y~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql-G-----ryeEAie~yeKALeL 1826 (1956)
|.. .+++++|+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++++.
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 665 55666666666666655 44455566666665543 2 566666666666554
No 111
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.44 E-value=1.7e-12 Score=143.50 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH
Q psy8682 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735 (1956)
Q Consensus 1656 eEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a 1735 (1956)
.+|+..|+++.+. .++.+++.+|.+|...+++++|+.+|+++++. ..+.+++++|.+
T Consensus 3 ~eA~~~~~~aa~~--g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---------------------g~~~a~~~lg~~ 59 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---------------------GDGDALALLAQL 59 (212)
T ss_dssp -CTTHHHHHHHHT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---------------------TCHHHHHHHHHH
T ss_pred chHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---------------------CCHHHHHHHHHH
Confidence 3578899999876 78999999999999999999999999999877 245678899999
Q ss_pred HHhcC----CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Q psy8682 1736 LSSRE----IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL----SDEYDKAVDCFRSALQVRP--DDSRLWNRLGA 1805 (1956)
Q Consensus 1736 y~~lG----dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~----lGdyeEAie~fekALel~P--dnaeA~~nLG~ 1805 (1956)
|.. + ++++|+.+|+++.+. .+ +.+++.+|.+|.. .+++++|+.+|+++++..+ .++.++++||.
T Consensus 60 y~~-~g~~~~~~~A~~~~~~A~~~--g~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~ 133 (212)
T 3rjv_A 60 KIR-NPQQADYPQARQLAEKAVEA--GS---KSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGL 133 (212)
T ss_dssp TTS-STTSCCHHHHHHHHHHHHHT--TC---HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHH
T ss_pred HHc-CCCCCCHHHHHHHHHHHHHC--CC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHH
Confidence 998 7 999999999999764 55 8899999999987 8999999999999999887 35899999999
Q ss_pred HHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1806 SLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL-G-----ANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1806 ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl-G-----dyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
+|.. .+++++|+.+|+++++. +.++.++++||.+|... | ++++|+.+|+++.+.. +..+...+
T Consensus 134 ~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~A~~~l 206 (212)
T 3rjv_A 134 IYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDTGCEEF 206 (212)
T ss_dssp HHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHHHHHHH
Confidence 9999 89999999999999998 67788999999999875 3 8999999999999884 33444433
No 112
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.44 E-value=1.3e-11 Score=147.53 Aligned_cols=232 Identities=11% Similarity=0.018 Sum_probs=194.4
Q ss_pred HHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q psy8682 1582 SRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGD----------LPSAILYLEAAAKQEPDNAEVWLSLGISLAE 1651 (1956)
Q Consensus 1582 eeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~Gd----------ydEAIe~fekALeldPdnaeAl~~LA~ay~~ 1651 (1956)
++|+.. +++++.++|++. .+|..++.++...+. +++++.++..++..+|.+..+|+..+.++..
T Consensus 47 ~eaL~~--t~~~L~~nP~~y----taWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~ 120 (331)
T 3dss_A 47 ESVLEL--TSQILGANPDFA----TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR 120 (331)
T ss_dssp HHHHHH--HHHHHTTCTTCH----HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHCchhH----HHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhc
Confidence 366776 777887766654 599999999988776 7899999999999999999999999999999
Q ss_pred cCC--hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHH
Q psy8682 1652 NEQ--DPQAIAALSKCLSIEPKNLEALMAISICFTNEAC-LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728 (1956)
Q Consensus 1652 lGd--yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd-ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a 1728 (1956)
.++ +++++.++.++++.+|.+..+|...+.++...|. ++++++++.++++. +|. ...+
T Consensus 121 l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~----~p~---------------N~SA 181 (331)
T 3dss_A 121 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR----NFS---------------NYSS 181 (331)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CSC---------------CHHH
T ss_pred cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----CCC---------------CHHH
Confidence 994 8999999999999999999999999999999998 69999999999999 777 3345
Q ss_pred HHHHHHHHHhc--------------CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-----------CCHHHHH
Q psy8682 1729 TLTFRSPLSSR--------------EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-----------DEYDKAV 1783 (1956)
Q Consensus 1729 ~lnLA~ay~~l--------------GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-----------GdyeEAi 1783 (1956)
+..++.++... +.++++++++.+++..+|++ ..+|+.+..++... +.+++++
T Consensus 182 W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d---~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el 258 (331)
T 3dss_A 182 WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND---QSAWFYHRWLLGAGSGRCELSVEKSTVLQSEL 258 (331)
T ss_dssp HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhccCccccchHHHHHHHHHH
Confidence 55666666554 56899999999999999999 99997666665554 4689999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHH---HCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1784 DCFRSALQVRPDDSRLWNRLGASLA---NGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1784 e~fekALel~PdnaeA~~nLG~ay~---qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+++++++++.|++...+..++.+.. ..|..+++..++.+.++++|....-|..++.-+
T Consensus 259 ~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 259 ESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 9999999999999655544444332 367889999999999999999887777766544
No 113
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.43 E-value=3.9e-12 Score=170.90 Aligned_cols=255 Identities=15% Similarity=0.067 Sum_probs=209.6
Q ss_pred hhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1574 PHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653 (1956)
Q Consensus 1574 a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lG 1653 (1956)
+....++|++|+.+ |.++ + ++..++..|.++.+.|++++|+++|..+.+..++ +.+...+|.+|.+++
T Consensus 1114 Aql~~G~~kEAIds--YiKA-----d----D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~ 1181 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDS--YIKA-----D----DPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTN 1181 (1630)
T ss_pred HHHhCCCHHHHHHH--HHhc-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhc
Confidence 44556789999998 7664 3 4559999999999999999999999999988754 233445999999999
Q ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHH
Q psy8682 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFR 1733 (1956)
Q Consensus 1654 dyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA 1733 (1956)
++++ ++.|. ..+ +...+..+|..+...|+|++|+.+|.++- .|..+|
T Consensus 1182 rlee-le~fI----~~~-n~ad~~~iGd~le~eg~YeeA~~~Y~kA~---------------------------ny~rLA 1228 (1630)
T 1xi4_A 1182 RLAE-LEEFI----NGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------------------------NFGRLA 1228 (1630)
T ss_pred CHHH-HHHHH----hCC-CHHHHHHHHHHHHhcCCHHHHHHHHHhhh---------------------------HHHHHH
Confidence 9885 44442 233 44567789999999999999999998862 246678
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.++.++|++++|++.+++| .+ ..+|...+.++...|+|..|..+... +.. +++.+..++..|...|.+
T Consensus 1229 ~tLvkLge~q~AIEaarKA-----~n---~~aWkev~~acve~~Ef~LA~~cgl~-Iiv---~~deLeeli~yYe~~G~f 1296 (1630)
T 1xi4_A 1229 STLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGYF 1296 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHh-----CC---HHHHHHHHHHHhhhhHHHHHHHHHHh-hhc---CHHHHHHHHHHHHHcCCH
Confidence 9999999999999999998 34 67899999999999999999998774 433 455566889999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC-----CChhchhccccchhhhcccHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVH--LGANTQAVEHFLTALNQQA-----ATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~yekALeLdP-----dn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
++|+.++++++.+++.+...+..||.+|.+ -++..+++++|...+.+.| .++..|..+..+|..-+++..|+
T Consensus 1297 eEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1297 EELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred HHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999999999999999998899888888765 4578889999998888877 77778888888888888888777
No 114
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.42 E-value=4.7e-14 Score=167.44 Aligned_cols=138 Identities=13% Similarity=0.098 Sum_probs=116.8
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-------------PDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~-------------a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
+..+.++..+|.++...|++++|+..|++++++.|.+ .. ..++.++|.+|..+|++++|+.+|+++
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYE-SSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTC-CCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcc-ccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566778889999999999999999999999998886 10 478888888888888888888888888
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhc
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA-VEHFLTALNQQ 1861 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEA-ie~yekALeLd 1861 (1956)
++++|+++.+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..+|++++| ...|++++...
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888888888888 55677776543
No 115
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.42 E-value=3.4e-13 Score=141.51 Aligned_cols=120 Identities=15% Similarity=0.079 Sum_probs=114.0
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
-..|++++.++|.+ ..+++.+|.++...|++++|+..|++++..+|.++.+|..+|.++..+|++++|+.+|++++.
T Consensus 7 ~~~~~~al~~~p~~---~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 7 GGTIAMLNEISSDT---LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp CCSHHHHTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhh---HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 35678889999988 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
++|+++.+++++|.+|..+|++++|+.+|+++++++|+++...
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 9999999999999999999999999999999999999987653
No 116
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.42 E-value=8.4e-13 Score=154.48 Aligned_cols=222 Identities=11% Similarity=0.027 Sum_probs=177.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhcCCCCCCC-chhh
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI-------SICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY 1713 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L-------A~aY~~lGdydEALe~leKALelg~e~dPd-~eay 1713 (1956)
++..|..+ ..+++..|.+.|.+++.++|+..++|..+ +.++...+++.+++..+.+.+.+ .|. ....
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l----~p~~l~a~ 84 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQI----SMSTLNAR 84 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTC----CGGGGCCE
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcC----Chhhhhhh
Confidence 34444444 46788888888888888888888888888 77888888888888888888887 665 0001
Q ss_pred hh---hc--CcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1714 KA---DA--LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788 (1956)
Q Consensus 1714 ~~---Ll--~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fek 1788 (1956)
.. ++ ..............++.++...|++++|.+.|..++...|.. . +.+.+|.++...+++++|+.+|++
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~---~-~~~~~a~l~~~~~r~~dA~~~l~~ 160 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEH---L-VAWMKAVVYGAAERWTDVIDQVKS 160 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHH---H-HHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCch---H-HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 00 000112345667788999999999999999999999888887 6 999999999999999999999998
Q ss_pred HHHhCCCC--HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1789 ALQVRPDD--SRLWNRLGASLANGNRPEEAVEAYHTALQLS--PG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1789 ALel~Pdn--aeA~~nLG~ay~qlGryeEAie~yeKALeL~--Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+....+.. ..+++.+|.++..+|++++|+.+|++++... |. ...+++++|.++.++|+.++|...|++++..+|+
T Consensus 161 a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 161 AGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred hhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 87653221 3589999999999999999999999998654 65 6789999999999999999999999999999999
Q ss_pred Chhchhcccc
Q psy8682 1864 THDGLTPHGL 1873 (1956)
Q Consensus 1864 n~dA~~~LG~ 1873 (1956)
+.++..|..
T Consensus 241 -~~~~~aL~~ 249 (282)
T 4f3v_A 241 -PKVAAALKD 249 (282)
T ss_dssp -HHHHHHHHC
T ss_pred -HHHHHHHhC
Confidence 777666544
No 117
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=99.41 E-value=4.3e-13 Score=156.92 Aligned_cols=210 Identities=11% Similarity=0.071 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH-------HHHHHHcCChHHHHHHHHHHHHhCCCCH----
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSL-------GISLAENEQDPQAIAALSKCLSIEPKNL---- 1673 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~L-------A~ay~~lGdyeEALe~yeKALeLdPdna---- 1673 (1956)
...+|..|..+ ..+++..|...|.+++..+|+.+++|..+ +.++...+++.+++..+++++.+.|...
T Consensus 7 ~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~ 85 (282)
T 4f3v_A 7 LASLFESAVSM-LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARI 85 (282)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEE
T ss_pred HHHHHHHHhcc-cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhh
Confidence 34667777776 58999999999999999999999999999 8999999999999999999999876533
Q ss_pred -----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHH
Q psy8682 1674 -----------------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPL 1736 (1956)
Q Consensus 1674 -----------------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay 1736 (1956)
++...++.++...|+|++|.+.|..++.. .|. .. ..+.+|.++
T Consensus 86 ~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~----~p~---------------~~-~~~~~a~l~ 145 (282)
T 4f3v_A 86 AIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA----GSE---------------HL-VAWMKAVVY 145 (282)
T ss_dssp ECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT----TCH---------------HH-HHHHHHHHH
T ss_pred ccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCc---------------hH-HHHHHHHHH
Confidence 44556889999999999999999888776 444 33 678899999
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHCCCh
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--PD-DSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~--Pd-naeA~~nLG~ay~qlGry 1813 (1956)
...+++++|+.+|+++....+.. ....+++.+|.++..+|++++|+.+|++++.-. |. .+.+++.+|.++.++|+.
T Consensus 146 ~~~~r~~dA~~~l~~a~~~~d~~-~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~ 224 (282)
T 4f3v_A 146 GAAERWTDVIDQVKSAGKWPDKF-LAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE 224 (282)
T ss_dssp HHTTCHHHHHHHHTTGGGCSCHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred HHcCCHHHHHHHHHHhhccCCcc-cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence 99999999999999776643211 113589999999999999999999999998654 55 667999999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~L 1837 (1956)
++|...|++++..+|+ ..+...|
T Consensus 225 deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 225 SAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHhcCCc-HHHHHHH
Confidence 9999999999999999 7766555
No 118
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.39 E-value=8.6e-13 Score=136.07 Aligned_cols=122 Identities=17% Similarity=0.121 Sum_probs=110.7
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
..|++++..+|.+ ...++.+|.++...|++++|+..|++++..+|+++.+|..+|.++...|++++|+.+|++++.+
T Consensus 5 ~~l~~al~~~p~~---~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 5 GTLAMLRGLSEDT---LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp ----CCTTCCHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcCCHHH---HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4667778888887 8899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
+|+++.+++.+|.+|..+|++++|+.+|+++++++|+++.....+
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 126 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALA 126 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHH
Confidence 999999999999999999999999999999999999988765443
No 119
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.39 E-value=6.6e-13 Score=163.45 Aligned_cols=258 Identities=14% Similarity=0.048 Sum_probs=145.7
Q ss_pred ChhhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1573 LPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652 (1956)
Q Consensus 1573 ~a~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~l 1652 (1956)
.+..-.+++++|+.. |.++ .+ ...+...+..+...|++++|+.+++.+++..+ ++.+...++.+|.+.
T Consensus 40 ~A~l~~g~~~eAIds--fika-----~D----~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~-~~~i~~~Li~~Y~Kl 107 (449)
T 1b89_A 40 KAQLQKGMVKEAIDS--YIKA-----DD----PSSYMEVVQAANTSGNWEELVKYLQMARKKAR-ESYVETELIFALAKT 107 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHcCCHHHHHHH--HHcC-----CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHh
Confidence 344556778888887 6442 23 33888899999999999999999999888544 377788899999999
Q ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHH
Q psy8682 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732 (1956)
Q Consensus 1653 GdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnL 1732 (1956)
|++.++.++++. |+ ..++..+|..+...|+|++|+.+|.++ .. +..+
T Consensus 108 g~l~e~e~f~~~-----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a-~n--------------------------~~~L 154 (449)
T 1b89_A 108 NRLAELEEFING-----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV-SN--------------------------FGRL 154 (449)
T ss_dssp -CHHHHTTTTTC-----C-----------------CTTTHHHHHHHT-TC--------------------------HHHH
T ss_pred CCHHHHHHHHcC-----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh-hh--------------------------HHHH
Confidence 999998888752 43 358999999999999999999999865 11 4667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Q psy8682 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1733 A~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr 1812 (1956)
|.++..+|++++|++.++++ .+ +.+|...+.++...|+++.|..+... +.. +++-...+..+|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA-----~~---~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~---~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA-----NS---TRTWKEVCFACVDGKEFRLAQMCGLH-IVV---HADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH-----TC---HHHHHHHHHHHHHTTCHHHHHHTTTT-TTT---CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc-----CC---chhHHHHHHHHHHcCcHHHHHHHHHH-HHh---CHhhHHHHHHHHHHCCC
Confidence 89999999999999999999 35 78899999999999999999877765 323 34445568889999999
Q ss_pred hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhcC-----CChhchhccccchhhhcccHHHH
Q psy8682 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVH--LGANTQAVEHFLTALNQQA-----ATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1813 yeEAie~yeKALeL~PdnaeA~~~LA~ay~k--lGdyEEAie~yekALeLdP-----dn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+++|+.++++++.+++.....+..||.+|.+ .++..++++.|...+.+.| .++..|..+..+|...+++..|+
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 9999999999999999999999999988865 4678888888888888888 88889999999999999998887
Q ss_pred HH
Q psy8682 1886 WY 1887 (1956)
Q Consensus 1886 ws 1887 (1956)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 120
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=9.4e-13 Score=152.19 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=84.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
++..++.+|..++..|++++|+..|++++..+|+++.+++.+|.+|...|++++|+..|+++++++|++..+++.+|.+|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 45678888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHhc
Q psy8682 1684 TNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALel 1702 (1956)
..+|++++|+..|++++++
T Consensus 83 ~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887
No 121
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.38 E-value=1.2e-12 Score=151.26 Aligned_cols=199 Identities=12% Similarity=0.063 Sum_probs=164.8
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
|.++.++..+|..+...|++++|+..|+++++.+|++..++.++|.+|...|++++|+..+++++++ +|+
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~------ 70 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQ------ 70 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTT------
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCC------
Confidence 5678899999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS--IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~--~~a~a~~~LG~ly~~lGdyeEAie~fekALel~ 1793 (1956)
...+++.+|.++...|++++|+..|+++++++|++. ....++..+ +..++...........
T Consensus 71 ---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 133 (281)
T 2c2l_A 71 ---------SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--------RIAKKKRWNSIEERRI 133 (281)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--------HHHHHHHHHHHHHTCC
T ss_pred ---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--------HHHHHHHHHHHHHHHH
Confidence 455778999999999999999999999999988651 111222211 1222333344444567
Q ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhcCC
Q psy8682 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL-GANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl-GdyEEAie~yekALeLdPd 1863 (1956)
+.+..+...++.++ .|++++|++.|+++++.+|++......++.++... +.+++|.+.|.++.+..+.
T Consensus 134 ~~~~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~ 202 (281)
T 2c2l_A 134 HQESELHSYLTRLI--AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKK 202 (281)
T ss_dssp CCCCHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSC
T ss_pred hhhHHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 78888888887765 69999999999999999999988888888888777 7789999999998875433
No 122
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.38 E-value=6.8e-12 Score=135.53 Aligned_cols=134 Identities=12% Similarity=0.135 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...++.+|..+...|++++|+..|++++ .| + +.+++.+|.+|...|++++|+..|++++.++|+++.++.++|.
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~ 79 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H---SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGM 79 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 4457889999999999999999999995 33 4 7899999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFV----------------RARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~Pdna----------------eA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
++..+|++++|+..|+++++..|.+. .+++++|.++..+|++++|+.+|+++++++|++.
T Consensus 80 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 155 (213)
T 1hh8_A 80 LYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155 (213)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence 99999999999999999999888765 9999999999999999999999999999999853
No 123
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.38 E-value=2.9e-13 Score=160.71 Aligned_cols=155 Identities=10% Similarity=0.050 Sum_probs=142.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHH
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---------------SRLWNRL 1803 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---------------aeA~~nL 1803 (1956)
++++++|+..+++++...|.. +.++..+|.++...|++++|+.+|++++.+.|.+ ..++.++
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~---a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nl 202 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQ---STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNL 202 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHH---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHH
Confidence 455667777788888888887 8899999999999999999999999999999998 6999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHH
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSD 1883 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~se 1883 (1956)
|.+|..+|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..+|.++..++++.+
T Consensus 203 a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHhccccC
Q psy8682 1884 SIWYSLRGFHPPF 1896 (1956)
Q Consensus 1884 AIws~Lr~Al~l~ 1896 (1956)
+....++..+..+
T Consensus 283 a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 283 REKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8666666665444
No 124
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.38 E-value=1.8e-12 Score=137.99 Aligned_cols=112 Identities=11% Similarity=0.113 Sum_probs=106.9
Q ss_pred hHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC
Q psy8682 1590 SMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669 (1956)
Q Consensus 1590 ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd 1669 (1956)
+++++.++|++ +++++.+|..++..|++++|+..|++++..+|+++.+|+.+|.+|...|++++|+.+|+++++++
T Consensus 25 l~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 25 LKDINAIPDDM----MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100 (151)
T ss_dssp TGGGCCSCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHhCCCHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC
Confidence 77888776664 55999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1670 PdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
|+++.+++++|.+|..+|++++|+.+|++++++ .|+
T Consensus 101 P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l----~~~ 136 (151)
T 3gyz_A 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH----SND 136 (151)
T ss_dssp SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCC
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC
Confidence 999999999999999999999999999999999 777
No 125
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.37 E-value=6.2e-13 Score=163.69 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=112.6
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
+.+|..+|.++.+.|++++|+..|.++ .++..+...+.++...|++++|+.+++.+.+..++ +.+...++.+|.
T Consensus 32 ~~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~-~~i~~~Li~~Y~ 105 (449)
T 1b89_A 32 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCcc-chhHHHHHHHHH
Confidence 349999999999999999999999774 46678999999999999999999999999886444 667889999999
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
++|++.++.++++ .|+ ..++..+|..+...|++++|..+|.++ .+
T Consensus 106 Klg~l~e~e~f~~---------~pn----------------~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n----- 150 (449)
T 1b89_A 106 KTNRLAELEEFIN---------GPN----------------NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SN----- 150 (449)
T ss_dssp ---CHHHHTTTTT---------CC--------------------------------CTTTHHHHHHHT-----TC-----
T ss_pred HhCCHHHHHHHHc---------CCc----------------HHHHHHHHHHHHHcCCHHHHHHHHHHh-----hh-----
Confidence 9999999876663 233 126788999999999999999999977 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
|..+|.++.++|+|++|+++++++ .++.+|..++.++...|+++.|..+... +...|+. ...++.+|.+.
T Consensus 151 -~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~ 220 (449)
T 1b89_A 151 -FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDR 220 (449)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHT
T ss_pred -HHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHC
Confidence 899999999999999999999999 5789999999999999999999887775 3344443 55688999999
Q ss_pred CCHHHHHHHHHHHHHhcCCChhchhccccchhh
Q psy8682 1845 GANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~dA~~~LG~l~~~ 1877 (1956)
|++++|+.++++++.+++.+..++..+|.++.+
T Consensus 221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 221 GYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998853
No 126
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.37 E-value=1.8e-11 Score=125.88 Aligned_cols=137 Identities=15% Similarity=0.082 Sum_probs=126.1
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..+|..+...|++++|+..|.++++..|.+ ..++..+|.++...|++++|+.++++++..+|.++.++..+
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 87 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRR 87 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 456778899999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG--ITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA--~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
|.++..+|++++|+.+|+++++++|.+..++..++ ..+...|++++|+..+.++..+.+.
T Consensus 88 a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 88 AASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhcc
Confidence 99999999999999999999999999998885544 4488899999999999998876543
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.35 E-value=3.2e-12 Score=135.13 Aligned_cols=130 Identities=17% Similarity=0.258 Sum_probs=120.2
Q ss_pred HHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHCCCh-
Q psy8682 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGAS-LANGNRP- 1813 (1956)
Q Consensus 1736 y~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~a-y~qlGry- 1813 (1956)
+...|++++|+..++++++.+|.+ +.++..+|.+|...|++++|+.+|++++.++|+++.++..+|.+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQN---SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCSC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcc
Confidence 456889999999999999999998 99999999999999999999999999999999999999999999 8899999
Q ss_pred -HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1814 -EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1814 -eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
++|+.+|+++++.+|++..+++.+|.++...|++++|+.+|++++.++|++....
T Consensus 97 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 97 TAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999999999999999999999999999999999999999999999976543
No 128
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.34 E-value=3e-11 Score=139.18 Aligned_cols=177 Identities=10% Similarity=0.091 Sum_probs=135.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
..+...+..+...|++++|+..+.++++. .+. ... .......++.+|.++...|++++|+.++++++
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~----~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKK----EEY---HPE------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----CCC---CHH------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcc----ccC---Chh------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 34556667777788888888888887776 333 000 11233345668888888899999999999998
Q ss_pred HhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1754 RQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL---QVRPDDS----RLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1754 el~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekAL---el~Pdna----eA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+..+.. .....++..+|.+|..+|++++|+.+|++++ +..+++. .+++++|.+|..+|++++|+.+|+++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 776543 1125588899999999999999999999998 4455543 68899999999999999999999999
Q ss_pred HhhCCC------cHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhcCC
Q psy8682 1824 LQLSPG------FVRARYNLGITCVHLGANTQA-VEHFLTALNQQAA 1863 (1956)
Q Consensus 1824 LeL~Pd------naeA~~~LA~ay~klGdyEEA-ie~yekALeLdPd 1863 (1956)
+++.+. ...+++++|.+|..+|++++| ..+|++|+.+...
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~ 269 (293)
T 2qfc_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 987532 367899999999999999999 8889999987543
No 129
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=4.8e-11 Score=116.45 Aligned_cols=133 Identities=22% Similarity=0.379 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
+++.+|..+...|++++|+..|+++++.+|.+..++..+|.++...|++++|+..+++++...|.+..++..+|.++...
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 45666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS 1758 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~ 1758 (1956)
|++++|+..+++++.. .|. ....+..+|.++...|++++|...+++++..+|.
T Consensus 83 ~~~~~A~~~~~~~~~~----~~~---------------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 83 GDYDEAIEYYQKALEL----DPR---------------SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp TCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHh----CCC---------------ChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 6666666666666655 333 1223445555566666666666666666555553
No 130
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.34 E-value=6.8e-12 Score=125.54 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|..+...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++..+++.+|.++.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 45666777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HcCCHHHHHHHHHHHHHhc------CCChhchhcc
Q psy8682 1843 HLGANTQAVEHFLTALNQQ------AATHDGLTPH 1871 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLd------Pdn~dA~~~L 1871 (1956)
.+|++++|+.+|+++++++ |++..++..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l 118 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLY 118 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHH
Confidence 7777777777777777777 5555444443
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.33 E-value=6.2e-11 Score=142.62 Aligned_cols=232 Identities=13% Similarity=-0.024 Sum_probs=195.0
Q ss_pred HHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-ChHH
Q psy8682 1581 FSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQG-DLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN-E-QDPQ 1657 (1956)
Q Consensus 1581 YeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~G-dydEAIe~fekALeldPdnaeAl~~LA~ay~~l-G-dyeE 1657 (1956)
.++|+.. +++++.++|++.. +|..++.++...| .+++++.++++++..+|++..+|+..+.++... + ++++
T Consensus 70 se~AL~l--t~~~L~~nP~~yt----aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 70 SERALEL--TEIIVRMNPAHYT----VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp SHHHHHH--HHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred CHHHHHH--HHHHHHhCchhHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 3567777 8888888776554 9999999999999 599999999999999999999999999999998 8 9999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHH
Q psy8682 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLH--------DALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHT 1729 (1956)
Q Consensus 1658 ALe~yeKALeLdPdnaeAl~~LA~aY~~lGdyd--------EALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~ 1729 (1956)
+++++.++++.+|.+..+|...+.++...|.++ +++++++++++. +|. ...++
T Consensus 144 EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~----dp~---------------N~SAW 204 (349)
T 3q7a_A 144 EIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV----DGR---------------NNSAW 204 (349)
T ss_dssp HHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH----CTT---------------CHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh----CCC---------------CHHHH
Confidence 999999999999999999999999999988888 999999999999 776 44567
Q ss_pred HHHHHHHHhcCC-------HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH--------------------HHH
Q psy8682 1730 LTFRSPLSSREI-------HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY--------------------DKA 1782 (1956)
Q Consensus 1730 lnLA~ay~~lGd-------yeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy--------------------eEA 1782 (1956)
...+.++...++ ++++++++.+++..+|.+ ..+|+.+..++...|+. .+-
T Consensus 205 ~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n---~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (349)
T 3q7a_A 205 GWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN---VSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETV 281 (349)
T ss_dssp HHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCCSGGGHHHHGGGTC----------
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhcCCCcccccccccccccccccccchhH
Confidence 778888888886 799999999999999999 99999988888877764 222
Q ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH-hhCCCcHHHHHHHHHH
Q psy8682 1783 VDCFRSALQVR------PDDSRLWNRLGASLANGNRPEEAVEAYHTAL-QLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1783 ie~fekALel~------PdnaeA~~nLG~ay~qlGryeEAie~yeKAL-eL~PdnaeA~~~LA~a 1840 (1956)
.......+... +..+.++..|+.+|...|+.++|+++|+... +.+|-....|...+..
T Consensus 282 ~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~ 346 (349)
T 3q7a_A 282 EAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE 346 (349)
T ss_dssp ----CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence 22222222222 4678899999999999999999999999987 6788888777766543
No 132
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=3e-11 Score=120.92 Aligned_cols=118 Identities=9% Similarity=0.022 Sum_probs=111.6
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..+|..+...|++++|+..|+++++.+|.+ +.++..+|.++..+|++++|+..|+++++++|+++.++..+
T Consensus 2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~---~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED---ARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 356678899999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhC------CCcHHHHHHHHHHHHHc
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~------PdnaeA~~~LA~ay~kl 1844 (1956)
|.++..+|++++|+..|+++++++ |.+..++..++.+..++
T Consensus 79 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999999999 99999998888877653
No 133
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.32 E-value=1.1e-11 Score=130.04 Aligned_cols=112 Identities=21% Similarity=0.314 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..++.+|.++...|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|++..+++.+|.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 67888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
.+|++++|+.+|+++++++|++..++..++..
T Consensus 91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 122 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE 122 (164)
T ss_dssp HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 99999999999999999999998887777653
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.32 E-value=5.8e-11 Score=136.74 Aligned_cols=178 Identities=11% Similarity=0.077 Sum_probs=142.7
Q ss_pred CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL------EALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1636 PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdna------eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
|.....+...+..+...|++++|++.+.++++..+... ..++.+|.++...|++++|+.++++++.. .+.
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----~~~ 147 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ----QLT 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTT----CCC
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH----Hhc
Confidence 33445566778888888888888888888888776654 23567888899999999999999999987 332
Q ss_pred chhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1710 PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA---RQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1710 ~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL---el~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
... ......++.++|.+|...|++++|+.+|++++ +..|.+ .....+++++|.+|..+|+|++|+.+
T Consensus 148 ---~~~------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~ 218 (293)
T 2qfc_A 148 ---GID------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQ 218 (293)
T ss_dssp ---SSC------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ---CCc------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHH
Confidence 000 11245678999999999999999999999999 445553 01126899999999999999999999
Q ss_pred HHHHHHhCCC------CHHHHHHHHHHHHHCCChHHH-HHHHHHHHhh
Q psy8682 1786 FRSALQVRPD------DSRLWNRLGASLANGNRPEEA-VEAYHTALQL 1826 (1956)
Q Consensus 1786 fekALel~Pd------naeA~~nLG~ay~qlGryeEA-ie~yeKALeL 1826 (1956)
+++++.+.+. ...+++++|.+|..+|++++| ..+|++|+.+
T Consensus 219 ~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 219 VNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 9999987532 278899999999999999999 8889999875
No 135
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.30 E-value=5.7e-11 Score=116.12 Aligned_cols=122 Identities=23% Similarity=0.252 Sum_probs=88.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....+..+|..+...|++++|+..+++++...|.+ ..++..+|.++...|++++|+.++++++...|+++.++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 85 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPAN---AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGR 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHH
Confidence 3455566677777777777777777777777777766 6777777777777777777777777777777777777777
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdy 1847 (1956)
+|.++...|++++|+.+|+++++..|++..++..+|.++..+|++
T Consensus 86 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 777777777777777777777777777777777777777766654
No 136
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.30 E-value=1.3e-11 Score=122.05 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|+++++.+|.+..+++.+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 34444445555555555555555555555545444555555555555555555555555555555554555555555555
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchh
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPR 1876 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~ 1876 (1956)
.+|++++|+.+|++++.++|++..++..++.++.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 129 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 5555555555555555555544444444444433
No 137
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.30 E-value=2e-12 Score=140.04 Aligned_cols=144 Identities=17% Similarity=0.128 Sum_probs=76.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------H
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----------------R 1798 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----------------e 1798 (1956)
.....|++++|.+.+.......+.. ...+..+|..+...|+|++|+..|++++.+.|.++ .
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~ 89 (198)
T 2fbn_A 13 GRENLYFQGAKKSIYDYTDEEKVQS---AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS 89 (198)
T ss_dssp ---------CCCSGGGCCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhccccCchhhCCHHHHHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence 3334444444444444333333333 44455555555555555555555555555555544 5
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAV 1878 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~l 1878 (1956)
++.++|.++..+|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+.+|+++++++|+++.++..++.++...
T Consensus 90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence 56666666666666666666666666666666666666666666666666666666666666666666666665555544
Q ss_pred ccc
Q psy8682 1879 KEM 1881 (1956)
Q Consensus 1879 g~~ 1881 (1956)
++.
T Consensus 170 ~~~ 172 (198)
T 2fbn_A 170 KEA 172 (198)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 138
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.29 E-value=3.5e-11 Score=117.63 Aligned_cols=119 Identities=15% Similarity=0.229 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++..+|.++...|++++|+..|++++...|+++.++..+|.++...|++++|+.++++++...|++..+++.+|.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~ 1881 (1956)
..|++++|+.+|++++.++|+++.++..+|.++...|++
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999988877765
No 139
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.29 E-value=6.1e-12 Score=160.38 Aligned_cols=188 Identities=12% Similarity=0.006 Sum_probs=164.2
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhh
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEAC----------LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGd----------ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e 1724 (1956)
.++|++.+.+++..+|++..+|+..+.++...|+ +++|+..++++++. +|+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK--------------- 105 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPK--------------- 105 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTT---------------
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCC---------------
Confidence 3577888888888888888888888888887777 89999999999999 777
Q ss_pred hHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHH
Q psy8682 1725 LANHTLTFRSPLSSRE--IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD-EYDKAVDCFRSALQVRPDDSRLWN 1801 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lG--dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG-dyeEAie~fekALel~PdnaeA~~ 1801 (1956)
...+|...+.++...+ ++++|++++.++++.+|.+ ..+|..++.++...| .+++++++++++++.+|.+..+|+
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N---~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~ 182 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERN---FHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWH 182 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccc---ccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHH
Confidence 4456777888888999 7799999999999999999 999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHC--------------CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHH------------HHHHHH
Q psy8682 1802 RLGASLANG--------------NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ------------AVEHFL 1855 (1956)
Q Consensus 1802 nLG~ay~ql--------------GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEE------------Aie~ye 1855 (1956)
.+|.++..+ +++++|++++.+|+.++|++..+|++++.++.+.+++++ |+.+|.
T Consensus 183 ~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~f~ 262 (567)
T 1dce_A 183 YRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFS 262 (567)
T ss_dssp HHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCceEEEEec
Confidence 999998875 567999999999999999999999999999999998777 666788
Q ss_pred HHHHhcCCC
Q psy8682 1856 TALNQQAAT 1864 (1956)
Q Consensus 1856 kALeLdPdn 1864 (1956)
+++.++|..
T Consensus 263 ~~i~~~~~~ 271 (567)
T 1dce_A 263 RPLTVGSRM 271 (567)
T ss_dssp EEECTTBTT
T ss_pred cceeccccc
Confidence 888888764
No 140
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.29 E-value=7.8e-12 Score=135.34 Aligned_cols=135 Identities=17% Similarity=0.136 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCC--CC-----------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS--ID-----------PDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~--~~-----------a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
...+..+..+|..+...|++++|+..|.+++.+.|.+. .. ..++.++|.++..+|++++|+.+++++
T Consensus 35 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 35 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 45667788999999999999999999999999988870 00 289999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH-HHHHHH
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV-EHFLTA 1857 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi-e~yekA 1857 (1956)
+.++|++..+++.+|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..++. ..|.+.
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988887776 334433
No 141
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.29 E-value=8.4e-11 Score=126.98 Aligned_cols=150 Identities=12% Similarity=0.078 Sum_probs=129.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
..++.+|.++...|++++|+..|++++.. . ..++.++|.++...|++++|+..|++++
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~----------------~~~~~~lg~~~~~~g~~~~A~~~~~~al 64 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAVQDP------H----------------SRICFNIGCMYTILKNMTEAEKAFTRSI 64 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSSSC------C----------------HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHcCC------C----------------hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35678899999999999999999887422 2 3467889999999999999999999999
Q ss_pred HhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHCCChHHHH
Q psy8682 1754 RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----------------RLWNRLGASLANGNRPEEAV 1817 (1956)
Q Consensus 1754 el~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna----------------eA~~nLG~ay~qlGryeEAi 1817 (1956)
+.+|.+ ..+++.+|.+|..+|++++|+..|+++++..|.+. .++.++|.++..+|++++|+
T Consensus 65 ~~~~~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 65 NRDKHL---AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCccc---hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 999998 99999999999999999999999999999888766 99999999999999999999
Q ss_pred HHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1818 e~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
.+|++++++.|++. .+..++|+..+.+....
T Consensus 142 ~~~~~al~~~p~~~------------~~~~~~a~~~~~~~~~~ 172 (213)
T 1hh8_A 142 EQLALATSMKSEPR------------HSKIDKAMECVWKQKLY 172 (213)
T ss_dssp HHHHHHHTTCCSGG------------GGHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHcCcccc------------cchHHHHHHHHHhcccc
Confidence 99999999999863 23455666666544433
No 142
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.29 E-value=1.5e-12 Score=161.13 Aligned_cols=153 Identities=13% Similarity=0.106 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---------------SRLWNRLGA 1805 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---------------aeA~~nLG~ 1805 (1956)
++++|+..+..++...|.. +..+..+|.+++.+|+|++|+..|++|+++.|.+ ..+++++|.
T Consensus 249 ~~~~A~~~~~~~~~~~~~~---a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 325 (457)
T 1kt0_A 249 SFEKAKESWEMDTKEKLEQ---AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM 325 (457)
T ss_dssp EEECCCCGGGSCHHHHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhcCHHHHHHH---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555554 5556666666666666666666666666666655 577777777
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+|.++|++++|+.+|+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..++.++..++++.++.
T Consensus 326 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 326 CYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777776666
Q ss_pred HHHHHhccccC
Q psy8682 1886 WYSLRGFHPPF 1896 (1956)
Q Consensus 1886 ws~Lr~Al~l~ 1896 (1956)
...++..+..+
T Consensus 406 ~~~~~~~f~k~ 416 (457)
T 1kt0_A 406 RRIYANMFKKF 416 (457)
T ss_dssp HHHHHHC----
T ss_pred HHHHHHHHhhh
Confidence 55555554443
No 143
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.28 E-value=9.5e-11 Score=134.96 Aligned_cols=176 Identities=12% Similarity=-0.004 Sum_probs=136.9
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE------VWLSLGISLAENEQDPQAIAALSKCLSIEPKN------ 1672 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdnae------Al~~LA~ay~~lGdyeEALe~yeKALeLdPdn------ 1672 (1956)
...+...+..+...|++++|+..+++++...+..+. .+..+|.++...+++++|+.+|++++++.+..
T Consensus 75 ~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~ 154 (293)
T 3u3w_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHH
Confidence 345556788899999999999999999998777655 33458888988999999999999999975432
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1673 aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
..++.++|.+|...|++++|+.+|+++++. +..... ..+....+++++|.+|..+|++++|+.+++++
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~----------~~~~~~--~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQ----------LEALHD--NEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHSSC--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHhccc--chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 347899999999999999999999999976 322210 12455667888888888888888888888888
Q ss_pred HHhCCCC---CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHh
Q psy8682 1753 ARQCPSQ---SIDPDVQNGLGVLFNLSD-EYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1753 Lel~P~n---~~~a~a~~~LG~ly~~lG-dyeEAie~fekALel 1792 (1956)
+++.+.. ...+.+++.+|.+|..+| .+++|+.+|++|+.+
T Consensus 223 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 223 IEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 8765432 123667788888888888 468888888887764
No 144
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=7.4e-12 Score=159.64 Aligned_cols=192 Identities=14% Similarity=0.102 Sum_probs=174.4
Q ss_pred HHcCC-hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC----------hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1616 LRQGD-LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ----------DPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1616 lk~Gd-ydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd----------yeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
...|+ .++|+..+.+++..+|++..+|+..+.++...|+ +++|++.++++++.+|++..+|+..+.++.
T Consensus 39 ~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~ 118 (567)
T 1dce_A 39 RQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 118 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34454 4678999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HcC--CHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCCC
Q psy8682 1685 NEA--CLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE-IHQQVLSLYLNAARQCPSQSI 1761 (1956)
Q Consensus 1685 ~lG--dydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lG-dyeEAle~LekALel~P~n~~ 1761 (1956)
..+ ++++|+++++++++. +|+ ...+|...+.++...| .++++++++.++++.+|.+
T Consensus 119 ~l~~~~~~~el~~~~k~l~~----d~~---------------N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n-- 177 (567)
T 1dce_A 119 RLPEPNWARELELCARFLEA----DER---------------NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN-- 177 (567)
T ss_dssp TCSSCCHHHHHHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCC--
T ss_pred HcccccHHHHHHHHHHHHhh----ccc---------------cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCC--
Confidence 999 779999999999999 777 3456777888888999 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH------------
Q psy8682 1762 DPDVQNGLGVLFNLS--------------DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE------------ 1815 (1956)
Q Consensus 1762 ~a~a~~~LG~ly~~l--------------GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE------------ 1815 (1956)
..+|..++.++..+ +.+++|++++.+|+.++|++..+|+.++.++...+++++
T Consensus 178 -~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~~~~~~~~~~~~~ 256 (567)
T 1dce_A 178 -YSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEAC 256 (567)
T ss_dssp -HHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSCEEEEEEETTTTE
T ss_pred -ccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccceeeeeeccCCce
Confidence 99999999998875 568999999999999999999999999999999999777
Q ss_pred HHHHHHHHHhhCCC
Q psy8682 1816 AVEAYHTALQLSPG 1829 (1956)
Q Consensus 1816 Aie~yeKALeL~Pd 1829 (1956)
|+.+|.+++.++|.
T Consensus 257 ~~~~f~~~i~~~~~ 270 (567)
T 1dce_A 257 LSVCFSRPLTVGSR 270 (567)
T ss_dssp EEEEEEEEECTTBT
T ss_pred EEEEeccceecccc
Confidence 66778888877765
No 145
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.28 E-value=8.3e-11 Score=139.36 Aligned_cols=248 Identities=11% Similarity=-0.039 Sum_probs=191.8
Q ss_pred hhhhhhHHHHHhchhhHhHhhhhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q psy8682 1575 HQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654 (1956)
Q Consensus 1575 ~~WL~dYeeALs~s~ydKAlqL~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGd 1654 (1956)
..|++.|..++.. +-++.+.++. ...+.+.+++..+|++.... ..+....+...++..+. ++
T Consensus 23 ~fy~G~yq~~i~e-----~~~~~~~~~~---~~~~~~~Rs~iAlg~~~~~~--------~~~~~~~a~~~la~~~~--~~ 84 (310)
T 3mv2_B 23 NYYTGNFVQCLQE-----IEKFSKVTDN---TLLFYKAKTLLALGQYQSQD--------PTSKLGKVLDLYVQFLD--TK 84 (310)
T ss_dssp HHTTTCHHHHTHH-----HHTSSCCCCH---HHHHHHHHHHHHTTCCCCCC--------SSSTTHHHHHHHHHHHT--TT
T ss_pred HHHhhHHHHHHHH-----HHhcCccchH---HHHHHHHHHHHHcCCCccCC--------CCCHHHHHHHHHHHHhc--cc
Confidence 4578889988875 3344555443 46777888888899887421 12223335555555442 32
Q ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHH
Q psy8682 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734 (1956)
Q Consensus 1655 yeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ 1734 (1956)
|+..+++.++..+....++..+|.++...|++++|++.+.+.+.. +|. .....+...++.
T Consensus 85 ---a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~-------------~~~lea~~l~vq 144 (310)
T 3mv2_B 85 ---NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDN----DEA-------------EGTTELLLLAIE 144 (310)
T ss_dssp ---CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCS-------------TTHHHHHHHHHH
T ss_pred ---HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCC-------------cCcHHHHHHHHH
Confidence 889999988876666777889999999999999999999999887 542 134566778899
Q ss_pred HHHhcCCHHHHHHHHHHHHHhCCC----CCCCHHHHHHHH--HHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q psy8682 1735 PLSSREIHQQVLSLYLNAARQCPS----QSIDPDVQNGLG--VLFNLSD--EYDKAVDCFRSALQVRPD--DSRLWNRLG 1804 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALel~P~----n~~~a~a~~~LG--~ly~~lG--dyeEAie~fekALel~Pd--naeA~~nLG 1804 (1956)
++...|+.+.|.+.++++.+.+|+ + -.+...++ .+....| ++.+|...|+++....|+ ....+.+
T Consensus 145 i~L~~~r~d~A~k~l~~~~~~~~d~~~~~---d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-- 219 (310)
T 3mv2_B 145 VALLNNNVSTASTIFDNYTNAIEDTVSGD---NEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-- 219 (310)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSCHHHHHH---HHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--
T ss_pred HHHHCCCHHHHHHHHHHHHhcCccccccc---hHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--
Confidence 999999999999999999999982 1 23444444 4466566 999999999999888886 3344444
Q ss_pred HHHHHCCChHHHHHHHHHHHhh----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhch
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQL----------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL----------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~ 1868 (1956)
++..+|++++|...++.+++. +|+++.++.+++.+...+|+ +|.+++.++.+.+|+++-+.
T Consensus 220 -~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~ 290 (310)
T 3mv2_B 220 -LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK 290 (310)
T ss_dssp -HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred -HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence 899999999999999988876 48899999999999999998 89999999999999998754
No 146
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.28 E-value=8.7e-11 Score=135.28 Aligned_cols=174 Identities=10% Similarity=0.070 Sum_probs=139.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q psy8682 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC 1756 (1956)
Q Consensus 1677 ~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~ 1756 (1956)
...+..+...|++++|+..+++++.. .+. ... .......+..+|.++...+++++|+.+|++++...
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~----~~~---~~~------~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~ 145 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKK----EEY---HPE------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ 145 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT----CCC---CHH------HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhcc----ccC---ChH------HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHh
Confidence 34566788889999999999999887 443 000 01123345568999999999999999999999976
Q ss_pred CCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1757 PSQSI---DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1757 P~n~~---~a~a~~~LG~ly~~lGdyeEAie~fekALel~-------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+.... ...++..+|.+|..+|++++|+.+|+++++.. +....+++++|.+|..+|++++|+.++++++++
T Consensus 146 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 146 LTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp CCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 55411 24479999999999999999999999999532 223468999999999999999999999999987
Q ss_pred CCC------cHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhcCC
Q psy8682 1827 SPG------FVRARYNLGITCVHLGA-NTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1827 ~Pd------naeA~~~LA~ay~klGd-yEEAie~yekALeLdPd 1863 (1956)
.+. .+.+++++|.+|..+|+ +++|+.+|++|+.+...
T Consensus 226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 543 37899999999999995 69999999999987653
No 147
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.28 E-value=4e-11 Score=118.42 Aligned_cols=121 Identities=16% Similarity=0.142 Sum_probs=116.2
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+....++..+|.++...|++++|+..|+++++..|.+ ..++..+|.++...|++++|+.+++++++..|.+..++..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD---AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTC---HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc---HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 4577889999999999999999999999999999998 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCC
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGd 1846 (1956)
+|.++...|++++|+.+|+++++.+|.+..++..++.++..+|+
T Consensus 90 la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999988774
No 148
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.27 E-value=1.6e-11 Score=128.81 Aligned_cols=109 Identities=11% Similarity=0.061 Sum_probs=103.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....++.+|.++...|++++|+..|++++..+|.+ +.++..+|.++..+|++++|+.+|++++.++|+++.++++
T Consensus 18 p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~ 94 (148)
T 2vgx_A 18 SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYD---SRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFH 94 (148)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCccc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH
Confidence 4567788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
+|.+|..+|++++|+.+|++++++.|+++...
T Consensus 95 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 126 (148)
T 2vgx_A 95 AAECLLQXGELAEAESGLFLAQELIANXPEFX 126 (148)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCCCcch
Confidence 99999999999999999999999998876543
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.24 E-value=7.4e-11 Score=123.84 Aligned_cols=116 Identities=20% Similarity=0.233 Sum_probs=109.1
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+..+..++.+|.++...|++++|+.+|+++++++|.+ +.+++.+|.+|..+|++++|+.+|+++++++|++..+++.
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPAN---PIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 3567788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|.+|..+|++++|+.+|+++++++|++..+++.++...
T Consensus 85 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999999988777666544
No 150
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.24 E-value=6.1e-11 Score=119.07 Aligned_cols=101 Identities=18% Similarity=0.280 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|.++...|++++|+.+|++++..+|+++.++..+|.++..+|++++|+..|+++++++|++..+++.+|.++.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhcCC
Q psy8682 1843 HLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPd 1863 (1956)
.+|++++|+.+|++++.++|+
T Consensus 89 ~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999998
No 151
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.23 E-value=2.3e-10 Score=117.64 Aligned_cols=135 Identities=11% Similarity=0.133 Sum_probs=120.5
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..++..|++++|+..|++++..+|.+..++..+|.++...|++++|+..|+++++.+|++..++..+|.++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1684 TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1684 ~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
...|++++|+.++++++.. +|. ... ......++..+...|++++|+..+.++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~----~p~---~~~----------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV----KPH---DKD----------AKMKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH----STT---CHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh----CCC---CHH----------HHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 9999999999999999999 776 111 112345566678889999999999887654
No 152
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.23 E-value=1.2e-10 Score=112.75 Aligned_cols=112 Identities=27% Similarity=0.487 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
.++..+|.++...|++++|+..|++++...|.+..++..+|.++...|++++|+.+|++++...|.+..++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
.|++++|+.+|++++.++|+++.++..+|.++
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 121 (125)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 55555555555555555555555555544433
No 153
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.23 E-value=7.4e-11 Score=121.59 Aligned_cols=116 Identities=8% Similarity=-0.012 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....++.+|..+...|++++|+..|++++..+|.+ +.++..+|.++..+|++++|+.+|++++.++|+++.+++.
T Consensus 15 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 91 (142)
T 2xcb_A 15 EDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYD---ARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH 91 (142)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4567788999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
+|.+|..+|++++|+.+|++++++.|+++.....+..+.
T Consensus 92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 130 (142)
T 2xcb_A 92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAG 130 (142)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHH
Confidence 999999999999999999999999998776554444433
No 154
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.22 E-value=1e-10 Score=112.55 Aligned_cols=111 Identities=15% Similarity=0.171 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
+..+..+|.++...|++++|+..|++++...|.++.++..+|.++...|++++|+..++++++..|++..++..+|.++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 44566666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1843 HLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1843 klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
..|++++|+.+|+++++++|+++.++..++.
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666666666666666666666665555443
No 155
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.22 E-value=6.6e-11 Score=120.80 Aligned_cols=101 Identities=17% Similarity=0.220 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------HHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-------VRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-------aeA~~ 1835 (1956)
+.++..+|..++..|+|++|+.+|+++++++|+++.++.++|.+|..+|++++|+..|+++++++|++ ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666666666666666666666666666666666666666666666666666666666665543 24666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
++|.++..+|++++|+++|++++...|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 7777777777777777777777777664
No 156
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.21 E-value=6.5e-11 Score=120.02 Aligned_cols=102 Identities=18% Similarity=0.194 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHc
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~kl 1844 (1956)
.++.+|..+...|++++|+..|+++++.+|+++.+|+.+|.++...|++++|+.+|+++++++|++..+++.+|.++...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 36777888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHHHHHHhcCCChh
Q psy8682 1845 GANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1845 GdyEEAie~yekALeLdPdn~d 1866 (1956)
|++++|+..|+++++++|++..
T Consensus 99 g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp HHHHHHHHHHHHHHC-------
T ss_pred CCHHHHHHHHHHHHHhCcCCCC
Confidence 8888888888888888887543
No 157
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.21 E-value=4.6e-10 Score=108.70 Aligned_cols=117 Identities=24% Similarity=0.431 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...+..+|.++...|++++|+..++++++..|.+ ..++..+|.++...|++++|+..+++++...|.+..++..+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN---AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCc---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence 5678889999999999999999999999999988 8999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
++...|++++|+..|+++++.+|++..++..+|.++...|
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999987765
No 158
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.20 E-value=3.8e-11 Score=125.79 Aligned_cols=101 Identities=18% Similarity=0.182 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQV------------------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel------------------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
.+..+|..++..|+|++|+..|.+++.+ +|....++.++|.+|..+|++++|+..+++++++
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444444444445555555555544444 4555566677777777777777777777777777
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+|+++.+++.+|.+|..+|++++|+.+|++++.++|+++
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 777777777777777777777777777777777777665
No 159
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.20 E-value=5.2e-11 Score=142.37 Aligned_cols=224 Identities=6% Similarity=-0.002 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
+.+..|..+...|+|++|+..|.++++..|.........+...... .... .++..+|.+|...
T Consensus 6 ~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~-------~~~~----------~al~~l~~~y~~~ 68 (434)
T 4b4t_Q 6 SKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRR-------NEQE----------TSILELGQLYVTM 68 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHH-------HHHH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHh-------hhHH----------HHHHHHHHHHHHC
Confidence 6778888888889999999999999888776533211111111111 1111 1234555556666
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDP 1763 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a 1763 (1956)
|++++|++++.+++.. ...+. +..........++.++...|++++|+.++++++...+.. ....
T Consensus 69 ~~~~~a~~~~~~~~~~----------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 135 (434)
T 4b4t_Q 69 GAKDKLREFIPHSTEY----------MMQFA---KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH 135 (434)
T ss_dssp TCHHHHHHHHHHTHHH----------HHTSC---HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH
T ss_pred CCHHHHHHHHHHHHHH----------HHHcc---chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH
Confidence 6666666666555554 11111 001122233445555555666666666666665543211 1224
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC---Cc----
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVR------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP---GF---- 1830 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~P---dn---- 1830 (1956)
.++..+|.+|...|+|++|+..+++++... +....++..+|.+|..+|++++|..+|++++...+ ..
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 215 (434)
T 4b4t_Q 136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV 215 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence 556666666666666666666666665431 22345566666666666666666666666665421 11
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1831 aeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
...+..+|.++...|++++|..+|.+++..
T Consensus 216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~ 245 (434)
T 4b4t_Q 216 AELDLMSGILHCEDKDYKTAFSYFFESFES 245 (434)
T ss_dssp HHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 234555666666666666666666666654
No 160
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.19 E-value=6.6e-11 Score=127.72 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------C-----HHHHHHHHHHHHHCCChHHHHHHHHHHHhh------
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD-------D-----SRLWNRLGASLANGNRPEEAVEAYHTALQL------ 1826 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pd-------n-----aeA~~nLG~ay~qlGryeEAie~yeKALeL------ 1826 (1956)
.+..+|..+...|+|++|+..|+++++++|+ + ..+|.++|.++..+|++++|+.+|++++++
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3444555555555555555555555555554 3 338888888888888888888888888888
Q ss_pred -CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1827 -SPGFVRAR----YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1827 -~PdnaeA~----~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999 999999999999999999999999999998877665543
No 161
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.19 E-value=4.4e-10 Score=108.01 Aligned_cols=114 Identities=19% Similarity=0.152 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG 1804 (1956)
.+..+..+|..+...|++++|+..|++++...|.+ +.++..+|.++...|++++|+..+++++...|+++.++..+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN---HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc---HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 35678889999999999999999999999999998 999999999999999999999999999999999999999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay 1841 (1956)
.++...|++++|+..|+++++.+|++..++..++.+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999999999999888775
No 162
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.18 E-value=2.5e-10 Score=116.55 Aligned_cols=104 Identities=16% Similarity=0.178 Sum_probs=97.5
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------ 1796 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------ 1796 (1956)
.+.+.++.++|..+...|++++|+.+|+++++++|++ +.++.++|.+|..+|++++|+..|+++++++|++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~---~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 81 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN---ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKL 81 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHH
Confidence 4667788999999999999999999999999999999 9999999999999999999999999999998765
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1797 -SRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1797 -aeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
..++.++|.++..+|++++|+.+|++++...|+
T Consensus 82 ~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 82 IAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 368899999999999999999999999999886
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=1.8e-10 Score=116.10 Aligned_cols=112 Identities=16% Similarity=0.087 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
...++.+|..+...|++++|+.+|+++++..|++ ..++..+|.++...|++++|+.+|+++++.+|++..+++.+|.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 7778888888888888888888888888888876 7888888888888888888888888888888888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhcCCChhchhccccc
Q psy8682 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLE 1874 (1956)
Q Consensus 1840 ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l 1874 (1956)
++..+|++++|+.+|++++.++|++..++..++.+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 88888888888888888888888887776665543
No 164
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.17 E-value=1e-11 Score=154.90 Aligned_cols=144 Identities=15% Similarity=0.093 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
+.++..+|..+...|++++|+.+|+++++.+|.+ ..++..+|.+|..+|++++|+.+|+++++++|+++.+++++|.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~ 82 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSN---AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAA 82 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3445667888999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHHhcCCChhchhccc
Q psy8682 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT--CVHLGANTQAVEHFL-----------TALNQQAATHDGLTPHG 1872 (1956)
Q Consensus 1806 ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~a--y~klGdyEEAie~ye-----------kALeLdPdn~dA~~~LG 1872 (1956)
+|..+|++++|+.+|+++++++|++..++..++.+ +...|++++|++.++ +++.++|+...++...+
T Consensus 83 ~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 162 (477)
T 1wao_1 83 SNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDG 162 (477)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGG
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccccccccccc
Confidence 99999999999999999999999999999999998 889999999999999 99999999887777665
No 165
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.17 E-value=1.3e-10 Score=121.72 Aligned_cols=121 Identities=10% Similarity=0.054 Sum_probs=109.3
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------CCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQ------------------CPSQSIDPDVQNGLGVLFNLSDEYDKAVDC 1785 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel------------------~P~n~~~a~a~~~LG~ly~~lGdyeEAie~ 1785 (1956)
..+..+..+|..+...|++++|+..|.+++.+ .|.. ..++.++|.+|..+|++++|+..
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~~~~~~A~~~ 85 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKN---IPLYANMSQCYLNIGDLHEAEET 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTH---HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHH---HHHHHHHHHHHHhcCcHHHHHHH
Confidence 35667889999999999999999999999998 5555 78999999999999999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcH-HHHHHHHHHHHHcCCH
Q psy8682 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV-RARYNLGITCVHLGAN 1847 (1956)
Q Consensus 1786 fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdna-eA~~~LA~ay~klGdy 1847 (1956)
+++++.++|+++.+++.+|.+|..+|++++|+..|+++++++|++. .+...++.+....++.
T Consensus 86 ~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 86 SSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 6677777776554433
No 166
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.16 E-value=2.5e-10 Score=121.49 Aligned_cols=166 Identities=11% Similarity=-0.020 Sum_probs=122.3
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC
Q psy8682 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI------EPKNLEALMAISICFTNEAC 1688 (1956)
Q Consensus 1615 ylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL------dPdnaeAl~~LA~aY~~lGd 1688 (1956)
++..|++++|...++.+....+..+.++..+|.++...|++++|+.++++++++ .+....++..+|.+|...|+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 456899999999666555433366889999999999999999999999999984 34456789999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHH
Q psy8682 1689 LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDV 1765 (1956)
Q Consensus 1689 ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a 1765 (1956)
+++|+.++++++.. ....... ......++.++|.++...|++++|+.++++++...+.. .....+
T Consensus 82 ~~~A~~~~~~al~~----------~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 149 (203)
T 3gw4_A 82 WDAARRCFLEEREL----------LASLPED--PLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACA 149 (203)
T ss_dssp HHHHHHHHHHHHHH----------HHHSCCC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHH----------HHHcCcc--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 99999999999988 3222100 11345667888888888889999988888888764322 011234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
+..+|.++..+|++++|+.++++++.+
T Consensus 150 ~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 150 FRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 567777777777777777777777765
No 167
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.16 E-value=9.5e-11 Score=118.82 Aligned_cols=110 Identities=34% Similarity=0.549 Sum_probs=99.1
Q ss_pred hhccCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHH
Q psy8682 1596 FAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675 (1956)
Q Consensus 1596 L~p~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeA 1675 (1956)
+...+|......++.+|..+...|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++..+
T Consensus 8 ~~~~~p~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 87 (121)
T 1hxi_A 8 FEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAV 87 (121)
T ss_dssp CCSSCGGGGCSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CcCCCccccchhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 34455543445789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCC
Q psy8682 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709 (1956)
Q Consensus 1676 l~~LA~aY~~lGdydEALe~leKALelg~e~dPd 1709 (1956)
+..+|.+|...|++++|+..++++++. +|+
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~----~P~ 117 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS----QPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CcC
Confidence 999999999999999999999999999 776
No 168
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.16 E-value=1.2e-10 Score=123.00 Aligned_cols=125 Identities=13% Similarity=0.174 Sum_probs=90.3
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHcCCH--HHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC-FTNEACL--HDA 1692 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~a-Y~~lGdy--dEA 1692 (1956)
...|++++|+..|++++..+|+++.+++.+|.+|...|++++|+.+|+++++++|++..++..+|.+ +...|++ ++|
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 4567777788888888888888888888888888888888888888888888888777777777777 6677777 777
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1693 LDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1693 Le~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
+.+++++++. +|. ...++..+|.++...|++++|+..|+++++..|.+
T Consensus 101 ~~~~~~al~~----~p~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 101 RAMIDKALAL----DSN---------------EITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHH----CTT---------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHh----CCC---------------cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 7777777777 554 23455667777777777777777777777777765
No 169
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.15 E-value=2.7e-10 Score=114.39 Aligned_cols=119 Identities=14% Similarity=0.024 Sum_probs=109.0
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nL 1803 (1956)
..+..+..+|.++...|++++|+.+|.+++..+|.+ +.++..+|.++..+|++++|+..|++++.++|+++.++..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---AVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCc---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 356778999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred HHHHHHCCChHHHHHHHHHHHhhCCC-----cHHHHHHHHHHHHHcC
Q psy8682 1804 GASLANGNRPEEAVEAYHTALQLSPG-----FVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1804 G~ay~qlGryeEAie~yeKALeL~Pd-----naeA~~~LA~ay~klG 1845 (1956)
|.++..+|++++|+..|++++++.|+ +..+...+..+..+..
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~ 130 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW 130 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999887 6666666666655443
No 170
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.14 E-value=1.7e-10 Score=110.26 Aligned_cols=107 Identities=23% Similarity=0.284 Sum_probs=96.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC--cHHH
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG--FVRA 1833 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd--naeA 1833 (1956)
+|.+ ..++..+|.++...|++++|+.+|+++++..|.+..++..+|.++...|++++|+.+|+++++..|. +..+
T Consensus 2 ~p~~---~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 2 VDQN---PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCSS---TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCc---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHH
Confidence 4555 6778889999999999999999999999999999999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhcCCCh
Q psy8682 1834 RYNLGITCVHL-GANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1834 ~~~LA~ay~kl-GdyEEAie~yekALeLdPdn~ 1865 (1956)
+..+|.++..+ |++++|++++++++...|.++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999999999 999999999999999988754
No 171
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.14 E-value=4.6e-10 Score=119.47 Aligned_cols=165 Identities=10% Similarity=0.020 Sum_probs=106.1
Q ss_pred HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHH
Q psy8682 1649 LAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728 (1956)
Q Consensus 1649 y~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a 1728 (1956)
+...|++++|...++......+....++..+|.++...|++++|+.++++++.. +..... .+....+
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------~~~~~~---~~~~~~~ 68 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQ----------AQKSGD---HTAEHRA 68 (203)
T ss_dssp -----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHTTCC---HHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH----------HHHcCC---cHHHHHH
Confidence 356788999988655554433366778889999999999999999999999886 222220 2345566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh---CCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HH
Q psy8682 1729 TLTFRSPLSSREIHQQVLSLYLNAARQ---CPSQS-IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP--DD----SR 1798 (1956)
Q Consensus 1729 ~lnLA~ay~~lGdyeEAle~LekALel---~P~n~-~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P--dn----ae 1798 (1956)
+.++|.++...|++++|+.++++++.+ .+++. ....++..+|.++..+|++++|+.++++++.+.+ .+ ..
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 148 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIAC 148 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHH
Confidence 777888888888888888888888776 33220 1244567777777777777777777777765422 11 12
Q ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1799 LWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1799 A~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
++..+|.++...|++++|+.++++++++
T Consensus 149 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 176 (203)
T 3gw4_A 149 AFRGLGDLAQQEKNLLEAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 3455555555555555555555555543
No 172
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.12 E-value=7.7e-11 Score=140.17 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP-----------------DVQNGLGVLFNLSDEYDKAVDCF 1786 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a-----------------~a~~~LG~ly~~lGdyeEAie~f 1786 (1956)
..+..+..+|..+...|++++|+..|++++...|.+ . .+++++|.+|..+|+|++|+.+|
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~---~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~ 253 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDD---FMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHH---HHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc---hhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 455667889999999999999999999999999886 3 24555555555555555555555
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGIT-CVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1787 ekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~a-y~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+++++++|++..+++++|.+|..+|++++|+.+|+++++++|++..++..|+.+ ....+..+++...|.+++...|+++
T Consensus 254 ~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGG 333 (338)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Confidence 555555555555555555555555555555555555555555555555555555 2233444555555555555555543
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.12 E-value=3.8e-10 Score=112.08 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc---HHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS---RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF---VRARYNLG 1838 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~Pdna---eA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn---aeA~~~LA 1838 (1956)
+++.+|.++...|++++|+..|++++...|+++ .+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 355666666777777777777777777666665 566677777777777777777777777777666 66677777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1839 ITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.++..+|++++|+.+|++++...|+++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 7777777777777777777777776655433
No 174
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.12 E-value=1.8e-10 Score=121.94 Aligned_cols=118 Identities=14% Similarity=0.143 Sum_probs=96.5
Q ss_pred hCCCCHHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCCC--------HHHHHHHHHHHHHcCCHHHH
Q psy8682 761 VRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMV--------ISNWIKYAQWEESQKQVDRA 832 (1956)
Q Consensus 761 kfP~d~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~s--------~~lWlkYAqfE~~~Gd~ErA 832 (1956)
..|.+++.|..|+..+. +.+++..- .++.+.|.+|+|++...|.. +-+|++||.|+. .+|+++|
T Consensus 8 ~~p~~yd~W~~yl~llE------~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~e-i~D~d~a 79 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLE------KNSVPLSD-ALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKA-IQEPDDA 79 (161)
T ss_dssp --CCSHHHHHHHHHHHH------HHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHH-HHCGGGC
T ss_pred eCCCCHHHHHHHHHHHH------HcCCCchh-hHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHH-hcCHHHH
Confidence 45899999999998877 33555333 67789999999999877543 568999999954 4899999
Q ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 833 RSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYK 886 (1956)
Q Consensus 833 RsIfERALs~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks~~LW~k 886 (1956)
|.+|..+++.+.+-..+|+.|++||.++|++.+||.|..+++..+|+...+...
T Consensus 80 R~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~ 133 (161)
T 4h7y_A 80 RDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEI 133 (161)
T ss_dssp HHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHH
Confidence 999999988777778999999999999999999999999999999988665443
No 175
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.11 E-value=4.5e-10 Score=139.01 Aligned_cols=134 Identities=16% Similarity=0.116 Sum_probs=119.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCC-------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-------------PDVQNGLGVLFNLSDEYDKAVDCFRSA 1789 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~-------------a~a~~~LG~ly~~lGdyeEAie~fekA 1789 (1956)
+..+..+..+|..+...|++++|+..|++++++.|.+ .. ..+++++|.+|..+|+|++|+.+|+++
T Consensus 265 ~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 265 LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEME-YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc-ccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4567788999999999999999999999999999986 11 588999999999999999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHH
Q psy8682 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH-FLTA 1857 (1956)
Q Consensus 1790 Lel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~-yekA 1857 (1956)
+.++|+++.+++++|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|... |.+.
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999888743 4433
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.10 E-value=5.5e-10 Score=112.48 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=120.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---- 1796 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---- 1796 (1956)
..+.++..+|.++...|++++|+.+++++++..+.. .....++..+|.++...|++++|+.++++++.+.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 456778899999999999999999999999886543 1123588999999999999999999999999876442
Q ss_pred --HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC------CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1797 --SRLWNRLGASLANGNRPEEAVEAYHTALQLSP------GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1797 --aeA~~nLG~ay~qlGryeEAie~yeKALeL~P------dnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
..++..+|.++...|++++|+.++++++++.+ ....++..+|.++...|++++|+.++++++++...
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998632 23567899999999999999999999999998765
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.10 E-value=4.3e-10 Score=110.10 Aligned_cols=110 Identities=15% Similarity=0.160 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc-------HHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF-------VRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn-------aeA~~ 1835 (1956)
+..+..+|.++...|++++|+.+|++++...|.++.++..+|.++...|++++|+.+|++++...|.+ ..+++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555566666666666666666666666666666666666666666666666666666666655544 55666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1836 NLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1836 ~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
.+|.++...|++++|+.+|++++.+.| ++..+..++.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~ 120 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ 120 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHH
Confidence 666666666666666666666666665 3444444443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.09 E-value=8.5e-10 Score=107.99 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=108.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD------- 1796 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn------- 1796 (1956)
..+..+..+|..+...|++++|+.+|.++++..|.+ +.++..+|.++...|++++|+.++++++...|.+
T Consensus 2 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN---MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc---HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 345678899999999999999999999999999998 9999999999999999999999999999998877
Q ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1797 SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1797 aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
..++..+|.++...|++++|+.+|+++++..| +......++.+...++
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 126 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILK 126 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 5888888888776544
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.08 E-value=1.7e-09 Score=107.37 Aligned_cols=118 Identities=16% Similarity=0.113 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD---SRLWNRLG 1804 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn---aeA~~nLG 1804 (1956)
+++.+|..+...|++++|+..|+++++..|++.....+++.+|.++...|++++|+..|++++...|++ +.+++.+|
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la 83 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG 83 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence 467889999999999999999999999999882233799999999999999999999999999999999 89999999
Q ss_pred HHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1805 ASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1805 ~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
.++..+|++++|+..|+++++..|++..+...+..+....+
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~ 124 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL 124 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence 99999999999999999999999999887766655544443
No 180
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.06 E-value=3.3e-10 Score=122.35 Aligned_cols=116 Identities=15% Similarity=0.109 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-------C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPS-------Q--SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV-- 1792 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~-------n--~~~a~a~~~LG~ly~~lGdyeEAie~fekALel-- 1792 (1956)
..+..+.++|..+...|++++|+..|+++++++|+ + +....+|.++|.++..+|+|++|+.+|+++|++
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 35667889999999999999999999999999998 3 001239999999999999999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHH
Q psy8682 1793 -----RPDDSRLW----NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839 (1956)
Q Consensus 1793 -----~PdnaeA~----~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ 1839 (1956)
+|++..+| +++|.++..+|++++|+.+|+++++++|++..+...+..
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 99999999 999999999999999999999999999887654444333
No 181
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=99.06 E-value=6.7e-10 Score=117.68 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHhhcccCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 810 RMVISNWIKYAQWEESQKQV------DRARSIYERALDVDHR--------NITLWLKYTELEMRNRQVNHARNLWDRAVT 875 (1956)
Q Consensus 810 ~~s~~lWlkYAqfE~~~Gd~------ErARsIfERALs~~Pk--------~~dLWl~YadfE~k~gnierARsLFERAL~ 875 (1956)
+.+++.|..|+..+++.|+. ++.|.+|+||+...|- .+.||+.|+.|+ ..+++++||++|+.+++
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~-ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK-AIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH-HHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHH
Confidence 78899999999999988999 9999999999995443 368999999995 45999999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Q psy8682 876 ILPRANQFWYKYTYMEEMLENVAGKLFVFHRDS 908 (1956)
Q Consensus 876 ~~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL 908 (1956)
.+.+-+++|+.|++||.++||.++||+|+.+|+
T Consensus 89 ~hKkFAKiwi~~AqFEiRqgnl~kARkILg~Ai 121 (161)
T 4h7y_A 89 NCKKFAFVHISFAQFELSQGNVKKSKQLLQKAV 121 (161)
T ss_dssp HCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHh
Confidence 866669999999999999999999999999998
No 182
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.2e-09 Score=109.95 Aligned_cols=121 Identities=15% Similarity=0.043 Sum_probs=110.3
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNR 1802 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~n 1802 (1956)
+.....++.+|..+...|++++|+.+|+++++..|++.....++..+|.+|...|++++|+.++++++...|++..++..
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 45677889999999999999999999999999988631125789999999999999999999999999999999999999
Q ss_pred HHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1803 LGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1803 LG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
+|.++...|++++|+.+|+++++++|++..++..++.+...
T Consensus 105 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 105 RSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 99999999999999999999999999999998888877543
No 183
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.03 E-value=1.3e-09 Score=131.71 Aligned_cols=124 Identities=13% Similarity=0.145 Sum_probs=87.4
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------hCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAAR----------------QCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~LekALe----------------l~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fek 1788 (1956)
.+..+..+|..+...|++++|+..|+++++ ..|.. ..++.++|.+|..+|++++|+.++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~---~~~~~nla~~~~~~g~~~~A~~~~~~ 298 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVA---LSCVLNIGACKLKMSDWQGAVDSCLE 298 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHH---HHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 345567789999999999999999999998 44444 55666666666666666666666666
Q ss_pred HHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1789 ALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
+++++|+++.+++.+|.+|..+|++++|+..|+++++++|++..++..++.++..++++++|.
T Consensus 299 al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 299 ALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666666666666666666665554
No 184
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.03 E-value=4.2e-10 Score=136.01 Aligned_cols=123 Identities=17% Similarity=0.160 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQ----------------VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALe----------------l~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+..+..+|..+...|+|++|+..|+++++ ..|.+..++.++|.+|..+|++++|+.+|++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45688999999999999999999999998 67788899999999999999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHH
Q psy8682 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSI 1885 (1956)
Q Consensus 1827 ~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAI 1885 (1956)
+|++..+++.+|.+|..+|++++|+.+|++|++++|++..++..++.++..+++..++.
T Consensus 303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998888777765554
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.02 E-value=3e-10 Score=135.05 Aligned_cols=136 Identities=15% Similarity=0.098 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHCCChHHHHHHHHHHHh
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS-----------------RLWNRLGASLANGNRPEEAVEAYHTALQ 1825 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdna-----------------eA~~nLG~ay~qlGryeEAie~yeKALe 1825 (1956)
+..+..+|..+...|+|++|+.+|++++.+.|++. .+++++|.+|..+|++++|+.+|+++++
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55688999999999999999999999999999876 4899999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhccccCCC
Q psy8682 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGD 1898 (1956)
Q Consensus 1826 L~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~Al~l~gr 1898 (1956)
++|++..+++++|.+|..+|++++|+.+|+++++++|+++.++..++.+........+.....+++++...+.
T Consensus 259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------------------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9999999999999999999999999999999999999999999999988655544444443555555554443
No 186
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.02 E-value=1.7e-09 Score=108.85 Aligned_cols=143 Identities=10% Similarity=0.015 Sum_probs=109.4
Q ss_pred ccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----
Q psy8682 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN------AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN---- 1672 (1956)
Q Consensus 1603 ~daeall~LG~aylk~GdydEAIe~fekALeldPdn------aeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn---- 1672 (1956)
..+.++..+|..+...|++++|+.+|+++++..+.. ..++..+|.++...|++++|+.++++++++.+..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 86 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRA 86 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 356688899999999999999999999998875432 2478889999999999999999999988875432
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1673 --LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1673 --aeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
..++..+|.++...|++++|+.++++++.. ...... .......+..+|.++...|++++|+.+++
T Consensus 87 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 87 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI----------AQELKD---RIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHTTC---HHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH----------HHHccc---hHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 457788888899999999999999888877 222110 12345566777888888888888888888
Q ss_pred HHHHhCCC
Q psy8682 1751 NAARQCPS 1758 (1956)
Q Consensus 1751 kALel~P~ 1758 (1956)
+++++...
T Consensus 154 ~a~~~~~~ 161 (164)
T 3ro3_A 154 KHLEISRE 161 (164)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 87766443
No 187
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.00 E-value=1.2e-08 Score=121.04 Aligned_cols=191 Identities=8% Similarity=-0.046 Sum_probs=155.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy8682 1624 AILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP--KNLEALMAISICFTNEACLHDALDTLKDKIR 1701 (1956)
Q Consensus 1624 AIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdP--dnaeAl~~LA~aY~~lGdydEALe~leKALe 1701 (1956)
|+..|++.+...+....++..+|.++...|++++|++.+.+.+..+| ++.+++..++.++..+|+.+.|.+.++++.+
T Consensus 85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 89999999887766777888999999999999999999999999887 8889999999999999999999999999988
Q ss_pred cCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC
Q psy8682 1702 PGQESNPRPSAYKADALPSKLTRLANHTLTFRSP--LSSRE--IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777 (1956)
Q Consensus 1702 lg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~a--y~~lG--dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG 1777 (1956)
. +|+. + .........++.. ....| ++++|..+|+++.+..|+. .....+++ ++..+|
T Consensus 165 ~----~~d~-----~------~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~-~~~~lLln---~~~~~g 225 (310)
T 3mv2_B 165 A----IEDT-----V------SGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTW-KTQLGLLN---LHLQQR 225 (310)
T ss_dssp H----SCHH-----H------HHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSH-HHHHHHHH---HHHHHT
T ss_pred c----Cccc-----c------ccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCc-ccHHHHHH---HHHHcC
Confidence 8 5510 0 0011222334333 44444 9999999999999888862 00233333 899999
Q ss_pred CHHHHHHHHHHHHHh----------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1778 EYDKAVDCFRSALQV----------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1778 dyeEAie~fekALel----------~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
++++|...++.+++. +|+++.++.+++.+...+|+ +|.++++++.+..|+++.+.-
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d 291 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH 291 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH
Confidence 999999999988876 48899999999999999998 899999999999999986554
No 188
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.00 E-value=2e-09 Score=102.73 Aligned_cols=99 Identities=16% Similarity=0.179 Sum_probs=95.8
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK--NLEALMAISI 1681 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd--naeAl~~LA~ 1681 (1956)
++..++.+|.++...|++++|+.+|+++++.+|.+..++..+|.++...|++++|+..|+++++..|+ +..++..+|.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34488999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred HHHHc-CCHHHHHHHHHHHHhc
Q psy8682 1682 CFTNE-ACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1682 aY~~l-GdydEALe~leKALel 1702 (1956)
++... |++++|++++++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 99999 9999999999999998
No 189
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.98 E-value=2.5e-09 Score=127.87 Aligned_cols=216 Identities=8% Similarity=0.009 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCc-hhhhhh-cCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy8682 1674 EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRP-SAYKAD-ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751 (1956)
Q Consensus 1674 eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~-eay~~L-l~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek 1751 (1956)
.+....|..+...|+|++|++.|.++++. .|.. ...... ...........++..+|.+|...|++++|.+++.+
T Consensus 5 ~~~l~~a~~l~~~~~y~eA~~~~~~~l~~----~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 5 GSKLEEARRLVNEKQYNEAEQVYLSLLDK----DSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp THHHHHHHHHHHHTCHHHHHHHHHHHHHS----CCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh----CcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34566778888899999999999999988 5541 111111 10112345566788999999999999999999999
Q ss_pred HHHhCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCChHHHHHHHHH
Q psy8682 1752 AARQCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP------DDSRLWNRLGASLANGNRPEEAVEAYHT 1822 (1956)
Q Consensus 1752 ALel~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~P------dnaeA~~nLG~ay~qlGryeEAie~yeK 1822 (1956)
++...+.. .....+...+|.++...|++++|+.++++++...+ ....++..+|.+|...|+|++|+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 99876553 01124566788888899999999999999987642 2367899999999999999999999999
Q ss_pred HHhh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh-------hchhccccchhhhcccHHHHHHHH
Q psy8682 1823 ALQL------SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH-------DGLTPHGLEPRAVKEMSDSIWYSL 1889 (1956)
Q Consensus 1823 ALeL------~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~-------dA~~~LG~l~~~lg~~seAIws~L 1889 (1956)
++.. .+....++..+|.+|..+|++++|..+|++++.+.+... ..+..+|.++...+++.++. .++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~-~~~ 239 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAF-SYF 239 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHH-HHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHH-HHH
Confidence 9875 234567899999999999999999999999998865432 34566777777788887766 555
Q ss_pred Hhccc
Q psy8682 1890 RGFHP 1894 (1956)
Q Consensus 1890 r~Al~ 1894 (1956)
..++.
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
No 190
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.98 E-value=2.3e-10 Score=142.65 Aligned_cols=126 Identities=12% Similarity=0.172 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Q psy8682 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843 (1956)
Q Consensus 1764 ~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~k 1843 (1956)
..+..+|.++...|++++|+.+|+++++++|+++.++.++|.+|..+|++++|+.+|+++++++|++..+++++|.+|..
T Consensus 7 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 7 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCChhchhccccc--hhhhcccHHHHHHHHH
Q psy8682 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGLE--PRAVKEMSDSIWYSLR 1890 (1956)
Q Consensus 1844 lGdyEEAie~yekALeLdPdn~dA~~~LG~l--~~~lg~~seAIws~Lr 1890 (1956)
+|++++|+.+|+++++++|++..++..++.+ +...|++.+|+ ..+.
T Consensus 87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~-~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAI-AGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh-cccc
Confidence 9999999999999999999999999999988 77778887777 5555
No 191
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.98 E-value=3.6e-10 Score=112.57 Aligned_cols=94 Identities=16% Similarity=0.168 Sum_probs=76.5
Q ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHH
Q psy8682 1775 LSDEYDKAVDCFRSALQV---RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851 (1956)
Q Consensus 1775 ~lGdyeEAie~fekALel---~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAi 1851 (1956)
.+|++++|+.+|++++++ +|+++.++..+|.+|..+|++++|+.+|+++++++|+++.+++.+|.++..+|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 367888888888888888 57778888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHhcCCChhch
Q psy8682 1852 EHFLTALNQQAATHDGL 1868 (1956)
Q Consensus 1852 e~yekALeLdPdn~dA~ 1868 (1956)
.+|++++...|+++...
T Consensus 82 ~~~~~al~~~p~~~~~~ 98 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQ 98 (117)
T ss_dssp HHHHHHHHHHCCCHHHH
T ss_pred HHHHHHHHhCCCcHHHH
Confidence 88888888888877653
No 192
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.91 E-value=1.2e-09 Score=108.81 Aligned_cols=95 Identities=20% Similarity=0.185 Sum_probs=85.7
Q ss_pred hcCCHHHHHHHHHHHHHh---CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChH
Q psy8682 1738 SREIHQQVLSLYLNAARQ---CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPE 1814 (1956)
Q Consensus 1738 ~lGdyeEAle~LekALel---~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGrye 1814 (1956)
..|++++|+.+|+++++. +|.+ ..++..+|.+|..+|++++|+.+|+++++.+|+++.++..+|.++..+|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~---~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHH---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHH
Confidence 468999999999999999 5776 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCcHHHHH
Q psy8682 1815 EAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1815 EAie~yeKALeL~PdnaeA~~ 1835 (1956)
+|+..|++++...|+++....
T Consensus 79 ~A~~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 79 QGVELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999999887654
No 193
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.89 E-value=1.7e-09 Score=116.56 Aligned_cols=93 Identities=18% Similarity=0.235 Sum_probs=55.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC----------hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC-
Q psy8682 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR----------PEEAVEAYHTALQLSPGFVRARYNLGITCVHLG- 1845 (1956)
Q Consensus 1777 GdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGr----------yeEAie~yeKALeL~PdnaeA~~~LA~ay~klG- 1845 (1956)
+.+++|++.++++++++|+++.+|+++|.++..+++ +++|+..|++|++++|++..+|+++|.+|..+|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 344555555555555555555555555555554444 346666666666666666666666666666553
Q ss_pred ----------CHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1846 ----------ANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1846 ----------dyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
++++|+.+|++|++++|++...+.
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~ 129 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK 129 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence 677777777777777777654433
No 194
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.81 E-value=7.8e-09 Score=111.50 Aligned_cols=92 Identities=15% Similarity=0.177 Sum_probs=85.9
Q ss_pred HhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q psy8682 1737 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY----------DKAVDCFRSALQVRPDDSRLWNRLGAS 1806 (1956)
Q Consensus 1737 ~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy----------eEAie~fekALel~PdnaeA~~nLG~a 1806 (1956)
.+.+.+++|++.++++++++|++ +.+++++|.++..++++ ++|+..|++|++++|++..+|+++|.+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~---aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~a 89 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLD---ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 35677999999999999999999 99999999999998875 599999999999999999999999999
Q ss_pred HHHCC-----------ChHHHHHHHHHHHhhCCCcH
Q psy8682 1807 LANGN-----------RPEEAVEAYHTALQLSPGFV 1831 (1956)
Q Consensus 1807 y~qlG-----------ryeEAie~yeKALeL~Pdna 1831 (1956)
|..+| ++++|+.+|++|++++|++.
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 99885 89999999999999999975
No 195
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=6.6e-09 Score=100.16 Aligned_cols=93 Identities=15% Similarity=0.227 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCc------HHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGF------VRARYN 1836 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pdn------aeA~~~ 1836 (1956)
+.++..+|.++...|++++|+..|+++++++|+++.++.++|.++..+|++++|+..|+++++++|++ ..+++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 83 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR 83 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 56677788888888888888888888888888888888888888888888888888888888888877 777778
Q ss_pred HHHHHHHcCCHHHHHHHHH
Q psy8682 1837 LGITCVHLGANTQAVEHFL 1855 (1956)
Q Consensus 1837 LA~ay~klGdyEEAie~ye 1855 (1956)
+|.++..+|++++|+..++
T Consensus 84 ~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 84 LELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHhHhhhHhHHH
Confidence 8888877777666655444
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.70 E-value=1.1e-08 Score=98.59 Aligned_cols=95 Identities=12% Similarity=0.120 Sum_probs=87.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC------HHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN------LEALM 1677 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn------aeAl~ 1677 (1956)
++..++.+|..++..|++++|+..|+++++.+|+++.+++.+|.++...|++++|+..|+++++++|++ ..+++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 567899999999999999999999999999999999999999999999999999999999999999999 88999
Q ss_pred HHHHHHHHcCCHHHHHHHHHH
Q psy8682 1678 AISICFTNEACLHDALDTLKD 1698 (1956)
Q Consensus 1678 ~LA~aY~~lGdydEALe~leK 1698 (1956)
.+|.++...|++++|+..+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 999999998887777655543
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.70 E-value=5.9e-08 Score=95.72 Aligned_cols=84 Identities=20% Similarity=0.231 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1781 EAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+|+..|+++++.+|+++.+++.+|.++...|++++|+.+|+++++++|++..+++.+|.++..+|++++|+.+|++++++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 46777888888888888888888888888888888888888888888888888888888888888888888888888887
Q ss_pred cCCC
Q psy8682 1861 QAAT 1864 (1956)
Q Consensus 1861 dPdn 1864 (1956)
.|++
T Consensus 83 ~~~~ 86 (115)
T 2kat_A 83 AQSR 86 (115)
T ss_dssp HHHH
T ss_pred cccc
Confidence 7753
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.66 E-value=1.9e-07 Score=86.76 Aligned_cols=84 Identities=29% Similarity=0.465 Sum_probs=80.6
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY 1683 (1956)
.+..++.+|..+...|++++|+..|++++..+|++..+++.+|.++...|++++|+..|+++++++|++..++..+|.++
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 67799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHcC
Q psy8682 1684 TNEA 1687 (1956)
Q Consensus 1684 ~~lG 1687 (1956)
...|
T Consensus 88 ~~~g 91 (91)
T 1na3_A 88 QKQG 91 (91)
T ss_dssp HHHC
T ss_pred HhcC
Confidence 7764
No 199
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.66 E-value=1.9e-07 Score=86.79 Aligned_cols=83 Identities=29% Similarity=0.553 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
..++..+|.++...|++++|+.+|++++...|+++.++..+|.++...|++++|+.+|+++++++|++..++..+|.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 45566666666666666666666666666666666666666666666666666666666666666666666666666665
Q ss_pred HcC
Q psy8682 1843 HLG 1845 (1956)
Q Consensus 1843 klG 1845 (1956)
.+|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 543
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.65 E-value=1.3e-07 Score=93.33 Aligned_cols=97 Identities=19% Similarity=0.235 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1744 EAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
+|+..|+++++.+|.+ +.+++.+|.+|...|++++|+.+|++++.++|++..++..+|.++..+|++++|+..|+++
T Consensus 3 ~a~~~~~~al~~~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQGTDN---MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTTCCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5789999999999998 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC--cHHHHHHHHHHHHH
Q psy8682 1824 LQLSPG--FVRARYNLGITCVH 1843 (1956)
Q Consensus 1824 LeL~Pd--naeA~~~LA~ay~k 1843 (1956)
+++.|. +..+...+...+..
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~ 101 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRR 101 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHH
Confidence 998774 33444444444433
No 201
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.57 E-value=8e-08 Score=91.82 Aligned_cols=92 Identities=13% Similarity=0.169 Sum_probs=78.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcC
Q psy8682 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSR-LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845 (1956)
Q Consensus 1767 ~~LG~ly~~lGdyeEAie~fekALel~Pdnae-A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klG 1845 (1956)
+.+|.++...|++++|+..|+++++.+|+++. ++..+|.++..+|++++|+.+|+++++++|++..++.+ +
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 56788888889999999999999999998888 89999999999999999999999999999988877644 5
Q ss_pred CHHHHHHHHHHHHHhcCCChh
Q psy8682 1846 ANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1846 dyEEAie~yekALeLdPdn~d 1866 (1956)
.+.+|+.+|++++..+|+++.
T Consensus 76 ~~~~a~~~~~~~~~~~p~~~~ 96 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEHHH 96 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCCSS
T ss_pred HHHHHHHHHHHHhccCccccc
Confidence 577888888888888887654
No 202
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.56 E-value=2.5e-07 Score=116.19 Aligned_cols=139 Identities=8% Similarity=-0.035 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ-----EPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSI-----EPKNL 1673 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel-----dPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeL-----dPdna 1673 (1956)
..+..+..+..+|+|++|+.+|++++++ .|++ +.++.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 311 ~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp 390 (490)
T 3n71_A 311 DTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA 390 (490)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH
Confidence 3445666777899999999999999976 3444 567899999999999999999999999986 34544
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1674 ---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1674 ---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
..+++||.+|..+|++++|+.+|++++++ +...+... .|........++.++..++.+++|...|.
T Consensus 391 ~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i----------~~~~lG~~-Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 391 QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAI----------LLVTHGPS-HPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHTCTT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH----------HHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999998 65555443 57777788889999999999999999998
Q ss_pred HHHHhC
Q psy8682 1751 NAARQC 1756 (1956)
Q Consensus 1751 kALel~ 1756 (1956)
++.+..
T Consensus 460 ~~~~~~ 465 (490)
T 3n71_A 460 KMREAA 465 (490)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.54 E-value=3.6e-07 Score=114.83 Aligned_cols=137 Identities=10% Similarity=-0.033 Sum_probs=111.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1644 SLGISLAENEQDPQAIAALSKCLSI-----EPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1644 ~LA~ay~~lGdyeEALe~yeKALeL-----dPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
..+..+..+|+|++|+..|++++++ .|+++ .++.+||.+|..+|+|++|+.++++++++ +..
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------~~~ 383 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDG----------YMK 383 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------HHH
Confidence 3444567899999999999999986 34444 57899999999999999999999999998 777
Q ss_pred hcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1716 Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
.+... .+..+..+.+||.+|..+|++++|+.+|++|+++ .|+++....+..+++.++..++.|++|...|.++.
T Consensus 384 ~lG~~-Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 384 LYHHN-NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp HSCTT-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCC-CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66444 6888889999999999999999999999999865 45552335566777888888888888888887775
Q ss_pred H
Q psy8682 1791 Q 1791 (1956)
Q Consensus 1791 e 1791 (1956)
+
T Consensus 463 ~ 463 (490)
T 3n71_A 463 E 463 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.52 E-value=9.9e-07 Score=91.62 Aligned_cols=121 Identities=17% Similarity=0.113 Sum_probs=106.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEE 1815 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeE 1815 (1956)
+++++|+.+|+++.+..... +. +|.+|...+..++|+.+|+++.+. .++.++++||.+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~-----a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF-----GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT-----HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCCCHh-----hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 47899999999999987544 34 999999999999999999999986 789999999999999 899999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhcCCChhchhcccc
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNLGITCVH----LGANTQAVEHFLTALNQQAATHDGLTPHGL 1873 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~LA~ay~k----lGdyEEAie~yekALeLdPdn~dA~~~LG~ 1873 (1956)
|+.+|+++.+. .++.+.++||.+|.. .+++++|+.+|++|.+. .++.+...++.
T Consensus 80 A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~~ 137 (138)
T 1klx_A 80 AAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILNN 137 (138)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC--
T ss_pred HHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHhh
Confidence 99999999986 779999999999999 99999999999999987 55666666653
No 205
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.45 E-value=2.9e-07 Score=89.77 Aligned_cols=71 Identities=15% Similarity=0.321 Sum_probs=48.2
Q ss_pred CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1793 ~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+|+++.+++.+|.+|...|++++|+.+|+++++++|++..+++.+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 46666667777777777777777777777777777776667777777777777777777777777766654
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.39 E-value=8.1e-07 Score=86.60 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=64.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC
Q psy8682 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1756 ~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd 1829 (1956)
+|++ +.+++.+|.+|...|++++|+.+|+++++++|+++.+|..+|.+|..+|++++|+..|++++++.|.
T Consensus 3 ~p~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 3 DPED---PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp --CC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CccC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5676 8899999999999999999999999999999999999999999999999999999999999987654
No 207
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.36 E-value=5.1e-07 Score=86.22 Aligned_cols=87 Identities=16% Similarity=0.247 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE-VWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNE 1686 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnae-Al~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~l 1686 (1956)
.+.+|..+...|++++|+..|+++++.+|+++. +++.+|.++...|++++|+..|+++++++|++..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 467899999999999999999999999999999 99999999999999999999999999999999988744
Q ss_pred CCHHHHHHHHHHHHhc
Q psy8682 1687 ACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1687 GdydEALe~leKALel 1702 (1956)
+.+.+|+..|++++..
T Consensus 75 ~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 75 KMVMDILNFYNKDMYN 90 (99)
T ss_dssp HHHHHHHHHHCCTTHH
T ss_pred HHHHHHHHHHHHHhcc
Confidence 5567778888777766
No 208
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.25 E-value=1.1e-05 Score=83.69 Aligned_cols=120 Identities=17% Similarity=0.108 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHH
Q psy8682 1687 ACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ 1766 (1956)
Q Consensus 1687 GdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~ 1766 (1956)
+++++|+.+|+++.+.+ ++. +. +|.+|...+..++|+.+|+++.+. .+ +.++
T Consensus 9 ~d~~~A~~~~~~aa~~g---~~~------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~---~~a~ 60 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN---EMF------------------GC--LSLVSNSQINKQKLFQYLSKACEL--NS---GNGC 60 (138)
T ss_dssp HHHHHHHHHHHHHHHTT---CTT------------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TC---HHHH
T ss_pred cCHHHHHHHHHHHHcCC---CHh------------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CC---HHHH
Confidence 46889999999999881 222 22 889999999999999999999987 45 8899
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----CCChHHHHHHHHHHHhhCCCcHHHHHHHH
Q psy8682 1767 NGLGVLFNL----SDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNLG 1838 (1956)
Q Consensus 1767 ~~LG~ly~~----lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q----lGryeEAie~yeKALeL~PdnaeA~~~LA 1838 (1956)
+++|.+|.. .+++++|+.+|+++.+. .++.++++||.+|.. .+++++|+.+|+++.+. .+..+..+|+
T Consensus 61 ~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~l~ 136 (138)
T 1klx_A 61 RFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL--GSEDACGILN 136 (138)
T ss_dssp HHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHC-
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHh
Confidence 999999998 89999999999999986 789999999999999 99999999999999987 4455555544
No 209
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.17 E-value=1.9e-05 Score=92.60 Aligned_cols=107 Identities=15% Similarity=0.094 Sum_probs=89.0
Q ss_pred hCCCCCCCHHHHHHHHHHHHH---c--C------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHC-----CChHHH
Q psy8682 1755 QCPSQSIDPDVQNGLGVLFNL---S--D------EYDKAVDCFRSALQVRPD--DSRLWNRLGASLANG-----NRPEEA 1816 (1956)
Q Consensus 1755 l~P~n~~~a~a~~~LG~ly~~---l--G------dyeEAie~fekALel~Pd--naeA~~nLG~ay~ql-----GryeEA 1816 (1956)
.+|++ +.+++..|.+... . | ...+|...++++++++|+ +..+|..+|.+|... |+.++|
T Consensus 147 ~~~~d---ve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA 223 (301)
T 3u64_A 147 CTRVD---VGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKA 223 (301)
T ss_dssp CCGGG---HHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHH
T ss_pred cCccc---cHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHH
Confidence 34555 6666655555422 1 3 257899999999999999 677999999999995 999999
Q ss_pred HHHHHHHHhhCCCc-HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhcCCC
Q psy8682 1817 VEAYHTALQLSPGF-VRARYNLGITCVH-LGANTQAVEHFLTALNQQAAT 1864 (1956)
Q Consensus 1817 ie~yeKALeL~Pdn-aeA~~~LA~ay~k-lGdyEEAie~yekALeLdPdn 1864 (1956)
.++|++|++++|+. ..+++..|..+.. .|++++|..+++++++..|..
T Consensus 224 ~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 224 HTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 99999999999975 9999999999988 599999999999999998874
No 210
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.16 E-value=1.3e-05 Score=97.02 Aligned_cols=123 Identities=15% Similarity=0.148 Sum_probs=100.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH----HHHHH----HHHH--HHHhCCCCHHHHHHHHHHHHH
Q psy8682 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY----DKAVD----CFRS--ALQVRPDDSRLWNRLGASLAN 1809 (1956)
Q Consensus 1740 GdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdy----eEAie----~fek--ALel~PdnaeA~~nLG~ay~q 1809 (1956)
..+.+|+.+|+++++++|++ +.++..++.+|.....+ ..... .++. ++...|.++.++..+|..+..
T Consensus 213 ~~~~~A~~l~e~Al~lDP~~---a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~ 289 (372)
T 3ly7_A 213 KSLNRASELLGEIVQSSPEF---TYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV 289 (372)
T ss_dssp HHHHHHHHHHHHHHHHCTTC---HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh
Confidence 34589999999999999999 88888888877532111 11111 2222 234568999999999999999
Q ss_pred CCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1810 lGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
.|++++|+..+++|+.++|+ ..++..+|.++...|++++|++.|++|+.++|..+.
T Consensus 290 ~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t 345 (372)
T 3ly7_A 290 KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT 345 (372)
T ss_dssp HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence 99999999999999999975 678899999999999999999999999999998654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.98 E-value=7.4e-05 Score=90.53 Aligned_cols=47 Identities=17% Similarity=0.135 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLA 1650 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPdnaeAl~~LA~ay~ 1650 (1956)
++-.++.+|..++..++ +.+|+.+|++|++++|+++.++..++.+|.
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~ 244 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDI 244 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 45567777888777654 578999999999999999888888888776
No 212
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=97.91 E-value=0.00034 Score=82.16 Aligned_cols=88 Identities=18% Similarity=0.143 Sum_probs=79.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-CCCh
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS-----DEYDKAVDCFRSALQVRPDD-SRLWNRLGASLAN-GNRP 1813 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~l-----GdyeEAie~fekALel~Pdn-aeA~~nLG~ay~q-lGry 1813 (1956)
....|...++++++++|+. ....+|..+|.+|... |+.++|.++|++|++++|+. ...++.+|..+.. .|++
T Consensus 178 ~l~~A~a~lerAleLDP~~-~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSY-QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTH-HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred hHHHHHHHHHHHHHhCCCc-ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 4578999999999999994 2377999999999996 99999999999999999975 9999999999988 5999
Q ss_pred HHHHHHHHHHHhhCCC
Q psy8682 1814 EEAVEAYHTALQLSPG 1829 (1956)
Q Consensus 1814 eEAie~yeKALeL~Pd 1829 (1956)
++|..++++++...|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999998776
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.90 E-value=3.6e-05 Score=95.25 Aligned_cols=121 Identities=7% Similarity=-0.046 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCCH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ-----EPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSI-----EPKNL 1673 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALel-----dPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeL-----dPdna 1673 (1956)
..+.....+..+|+|++|+..+++++++ .|++ ..++.++|.+|..+|+|++|+.++++++++ .|+++
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp 368 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP 368 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh
Confidence 3344455667889999999999999975 3445 557899999999999999999999999976 24444
Q ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh
Q psy8682 1674 ---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738 (1956)
Q Consensus 1674 ---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~ 1738 (1956)
..+++||.+|..+|++++|+.+|++++++ +....... .|....++.+|+.+...
T Consensus 369 ~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i----------~~~~lG~~-Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 369 VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDI----------MRVTHGRE-HSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHTCTT-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------HHHhcCCC-ChHHHHHHHHHHHHHHH
Confidence 56899999999999999999999999998 55555333 56666666677766643
No 214
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.89 E-value=4.8e-05 Score=74.71 Aligned_cols=73 Identities=14% Similarity=0.042 Sum_probs=59.6
Q ss_pred CCCCHHHHHHHHHHHHHCCC---hHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCh
Q psy8682 1793 RPDDSRLWNRLGASLANGNR---PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865 (1956)
Q Consensus 1793 ~PdnaeA~~nLG~ay~qlGr---yeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~ 1865 (1956)
+|+++.++..+|.+++..++ .++|...++++++++|+++.+++.+|..+++.|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence 57788888888888876555 68888888888888888888888888888888888888888888888888733
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.86 E-value=5.3e-05 Score=93.71 Aligned_cols=117 Identities=15% Similarity=-0.010 Sum_probs=93.2
Q ss_pred HHHHHcCChHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcC
Q psy8682 1647 ISLAENEQDPQAIAALSKCLSIE-----PKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL 1718 (1956)
Q Consensus 1647 ~ay~~lGdyeEALe~yeKALeLd-----Pdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~ 1718 (1956)
.-+..+|+|++|+..+++++++. |+++ .++.++|.+|..+|+|++|+.++++++.+ +...+.
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i----------~~~~lg 364 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEP----------YRIFFP 364 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------HHHHSC
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----------HHHHcC
Confidence 34567899999999999999863 5554 56889999999999999999999999998 777665
Q ss_pred cchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHH
Q psy8682 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQSIDPDVQNGLGVLFN 1774 (1956)
Q Consensus 1719 ~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n~~~a~a~~~LG~ly~ 1774 (1956)
.. .+..+..++++|.+|..+|++++|+.+|++|+++ .|+++....++.+|+.+..
T Consensus 365 ~~-Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~ 424 (429)
T 3qwp_A 365 GS-HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDA 424 (429)
T ss_dssp SS-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHH
T ss_pred CC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 44 7888899999999999999999999999999875 4555222344455555543
No 216
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.86 E-value=4e-05 Score=95.00 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=76.1
Q ss_pred HHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHcCChHHHHHHHHHHHHh-----CCCC---HHHHHHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQ-----EPDN---AEVWLSLGISLAENEQDPQAIAALSKCLSI-----EPKN---LEALMAI 1679 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALel-----dPdn---aeAl~~LA~ay~~lGdyeEALe~yeKALeL-----dPdn---aeAl~~L 1679 (1956)
...|+|++|+.+|++++++ .|++ +.++.++|.+|..+|+|++|+.++++++++ .|++ +..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3568999999999999985 4555 457889999999999999999999999986 3444 4568999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1680 SICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1680 A~aY~~lGdydEALe~leKALel 1702 (1956)
|.+|..+|++++|+.+|++|+++
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHH
Confidence 99999999999999999999998
No 217
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.81 E-value=4.8e-05 Score=81.64 Aligned_cols=93 Identities=10% Similarity=-0.001 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC---ChHHHHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGN---RPEEAVEAYHTALQLS-P-GFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1779 yeEAie~fekALel~PdnaeA~~nLG~ay~qlG---ryeEAie~yeKALeL~-P-dnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
...+.+.|.+.+..++.+..+.+++|.++.+.+ +.++|+..++..++.+ | +..+++|+||..+.++|+|++|+++
T Consensus 14 l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 445777788888888888888999999998888 5668999999988887 6 5678889999999999999999999
Q ss_pred HHHHHHhcCCChhchhcc
Q psy8682 1854 FLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1854 yekALeLdPdn~dA~~~L 1871 (1956)
++++|+++|+|..+...+
T Consensus 94 ~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHH
Confidence 999999999888765544
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.78 E-value=6.9e-05 Score=92.91 Aligned_cols=94 Identities=12% Similarity=-0.021 Sum_probs=81.7
Q ss_pred HcCChHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchh
Q psy8682 1651 ENEQDPQAIAALSKCLSI-----EPKNL---EALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722 (1956)
Q Consensus 1651 ~lGdyeEALe~yeKALeL-----dPdna---eAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl 1722 (1956)
..|+|++|+..|++++++ .|+++ .++.+||.+|..+|+|++|+.++++++.+ +...+... .
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i----------~~~~lG~~-H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKP----------YSKHYPVY-S 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------HHHHSCSS-C
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH----------HHHHcCCC-C
Confidence 468999999999999986 35554 56889999999999999999999999999 77766544 6
Q ss_pred hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q psy8682 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755 (1956)
Q Consensus 1723 ~e~a~a~lnLA~ay~~lGdyeEAle~LekALel 1755 (1956)
+..+..+.+||.+|..+|++++|+.+|++|+++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence 888889999999999999999999999999875
No 219
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.74 E-value=0.00017 Score=71.35 Aligned_cols=77 Identities=21% Similarity=0.276 Sum_probs=70.9
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHH
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQE-------PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeld-------PdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl 1676 (1956)
++..++.+|..++..|+|..|+..|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 56789999999999999999999999999863 34578999999999999999999999999999999999998
Q ss_pred HHHH
Q psy8682 1677 MAIS 1680 (1956)
Q Consensus 1677 ~~LA 1680 (1956)
.+++
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 8877
No 220
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.73 E-value=0.0019 Score=81.40 Aligned_cols=165 Identities=7% Similarity=-0.061 Sum_probs=123.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhcCCCCCCCch
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAISICFTNEA---------CLHDALDTLKDKIRPGQESNPRPS 1711 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~LA~aY~~lG---------dydEALe~leKALelg~e~dPd~e 1711 (1956)
+..+-..+.+.|+.++|+++|+++.+.. .-+...|..+-.++...+ ..++|.+.|+++... ...|+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~~Pd-- 104 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KVVPN-- 104 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TCCCC--
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CCCCC--
Confidence 3444455666677777777777666543 223445555555554433 368899999988776 23455
Q ss_pred hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1712 AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791 (1956)
Q Consensus 1712 ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALe 1791 (1956)
..++..+...|.+.|++++|..+|+++.+..-. .+..+|..+-..|.+.|+.++|.+.|++..+
T Consensus 105 --------------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 105 --------------EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ--PRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp --------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 234566778999999999999999999875321 1278899999999999999999999999987
Q ss_pred hC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1792 VR-PDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1792 l~-PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
.. .-+...|..+-.+|.+.|+.++|.+++++..+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 64 336788999999999999999999999998774
No 221
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=97.71 E-value=0.0013 Score=82.73 Aligned_cols=166 Identities=8% Similarity=-0.051 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhc---------CCHHHH
Q psy8682 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSR---------EIHQQV 1745 (1956)
Q Consensus 1675 Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~l---------GdyeEA 1745 (1956)
.+..+-..+.+.|+.++|+++|+++.+. ...|+...| ..+-.++... +..++|
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~--Gv~pd~~ty----------------n~Li~~c~~~~~~~~~~~~~~l~~A 89 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN--GVQLSQYHY----------------NVLLYVCSLAEAATESSPNPGLSRG 89 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH--TCCCCHHHH----------------HHHHHHHTTCCCCSSSSCCHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc--CCCCCHhHH----------------HHHHHHHHhCCchhhhhhcchHHHH
Confidence 4566677889999999999999999876 235552223 3333444433 347899
Q ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1746 le~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-PdnaeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
.++|.++....-. .+..+|..+...|.+.|++++|...|++..+.. ..+..+|..+-..|.+.|+.++|.+.|++..
T Consensus 90 ~~lf~~M~~~G~~--Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 90 FDIFKQMIVDKVV--PNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHTTCC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 9999998775422 127889999999999999999999999988764 3468899999999999999999999999998
Q ss_pred hhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1825 QLSP-GFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860 (1956)
Q Consensus 1825 eL~P-dnaeA~~~LA~ay~klGdyEEAie~yekALeL 1860 (1956)
+..- -+...|..|..+|.+.|+.++|.++|++..+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 7532 25678999999999999999999999988654
No 222
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.69 E-value=0.00024 Score=70.24 Aligned_cols=76 Identities=20% Similarity=0.170 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~-------PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~ 1835 (1956)
+.-.+.+|..++..|+|..|+..|++|++.. +....++..+|.++.++|++++|+.++++++++.|++..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 3445555666666666666666666555542 123444555555555555555555555555555555555444
Q ss_pred HHH
Q psy8682 1836 NLG 1838 (1956)
Q Consensus 1836 ~LA 1838 (1956)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 443
No 223
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.62 E-value=0.00026 Score=69.52 Aligned_cols=68 Identities=18% Similarity=0.023 Sum_probs=33.2
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPd 1671 (1956)
+++.+..+|.+++..++ .++|...++++++.+|+++.+++.+|..++..|+|++|+.+++++++.+|.
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 33444455554443333 345555555555555555555555555555555555555555555544444
No 224
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.52 E-value=0.0005 Score=73.84 Aligned_cols=94 Identities=12% Similarity=-0.028 Sum_probs=82.4
Q ss_pred CHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCChHH
Q psy8682 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD---EYDKAVDCFRSALQVR-P-DDSRLWNRLGASLANGNRPEE 1815 (1956)
Q Consensus 1741 dyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lG---dyeEAie~fekALel~-P-dnaeA~~nLG~ay~qlGryeE 1815 (1956)
....+.+.|.+.+..++.+ ..+.+++|.++.+.+ +.++++..++.+++.+ | +..+.+++||..++++|+|++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~---~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCC---HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHccCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3456777888888877776 999999999999988 6779999999999998 6 568999999999999999999
Q ss_pred HHHHHHHHHhhCCCcHHHHHHH
Q psy8682 1816 AVEAYHTALQLSPGFVRARYNL 1837 (1956)
Q Consensus 1816 Aie~yeKALeL~PdnaeA~~~L 1837 (1956)
|++++++++++.|++..+...+
T Consensus 90 A~~y~~~lL~ieP~n~QA~~Lk 111 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKELE 111 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHH
Confidence 9999999999999988776543
No 225
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=97.44 E-value=0.00078 Score=72.24 Aligned_cols=122 Identities=15% Similarity=0.225 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHH---cCCHHHHHHHHHHhhc---------ccCCCHHHHHHHHHHHHHc
Q psy8682 795 QHRKRKAFEDNIRKNRMV--ISNWIKYAQWEES---QKQVDRARSIYERALD---------VDHRNITLWLKYTELEMRN 860 (1956)
Q Consensus 795 ~~RAR~lyEraL~~~~~s--~~lWlkYAqfE~~---~Gd~ErARsIfERALs---------~~Pk~~dLWl~YadfE~k~ 860 (1956)
..++|+.||..|...... ..+|.+|++|-.. .|. ..-..++||+++ .+|+...||+.|+++ +
T Consensus 6 ~~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~g~-~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~ 81 (152)
T 4a1g_A 6 PENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPENK-EYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEY---N 81 (152)
T ss_dssp HHHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSSCT-HHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTT---B
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCCCc-hhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHh---c
Confidence 346888999999885222 5889999999765 354 347789999998 345568999999998 3
Q ss_pred CChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHhhc
Q psy8682 861 RQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTLSL 923 (1956)
Q Consensus 861 gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~fEl 923 (1956)
.+ .+.+|+..... --+.+.+|..|+.+.+..|+.+.|..||++++ .+...|-..|-.|..
T Consensus 82 ~d---p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~ 147 (152)
T 4a1g_A 82 SD---LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQT 147 (152)
T ss_dssp SC---HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHH
T ss_pred CC---HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHH
Confidence 33 79999998873 34458999999999999999999999999999 566677777755543
No 226
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0015 Score=72.97 Aligned_cols=128 Identities=13% Similarity=0.206 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHhh--c-CCC-HHHHHHHHHHHHH---cCCH--H-HHH-HHHHHhhc---------ccCCCHHHHHHH
Q psy8682 794 YQHRKRKAFEDNIRK--N-RMV-ISNWIKYAQWEES---QKQV--D-RAR-SIYERALD---------VDHRNITLWLKY 853 (1956)
Q Consensus 794 ~~~RAR~lyEraL~~--~-~~s-~~lWlkYAqfE~~---~Gd~--E-rAR-sIfERALs---------~~Pk~~dLWl~Y 853 (1956)
.+...|+.||+.|.. . ... ..+|.+|++|-.. .|.. + .-. .++||+++ .+|+..+||+.|
T Consensus 7 ~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Y 86 (202)
T 3esl_A 7 QLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWY 86 (202)
T ss_dssp HHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 456788999999987 2 222 5899999999653 2443 2 233 79999998 355668999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHhh
Q psy8682 854 TELEMRNRQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTLS 922 (1956)
Q Consensus 854 adfE~k~gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~fE 922 (1956)
+++- ..++....+.+|...... --+.+.+|..|+.+.+..|+.+.|..||.+++ .+...|-..|-.|.
T Consensus 87 a~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~~~F~ 160 (202)
T 3esl_A 87 INLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYE 160 (202)
T ss_dssp HHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHH
T ss_pred HHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 9974 234467899999998874 34458999999999999999999999999999 56666777774443
No 227
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=97.25 E-value=0.0011 Score=75.05 Aligned_cols=125 Identities=14% Similarity=0.234 Sum_probs=95.6
Q ss_pred hhHHHHHHHHHHHHHHhhc---CCCHHHHHHHHHHHHHc---CC--HHHHHHHHHHhhc---------ccCCCHHHHHHH
Q psy8682 791 LRDYQHRKRKAFEDNIRKN---RMVISNWIKYAQWEESQ---KQ--VDRARSIYERALD---------VDHRNITLWLKY 853 (1956)
Q Consensus 791 a~~~~~RAR~lyEraL~~~---~~s~~lWlkYAqfE~~~---Gd--~ErARsIfERALs---------~~Pk~~dLWl~Y 853 (1956)
....+.+.|..||..|... ..-..+|.+|++|-... |. -..-..++||+++ .+|+...||+.|
T Consensus 47 ~~~~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L~~lLErc~~~F~~~~rYknD~RyLklWl~Y 126 (223)
T 4aez_C 47 EVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRYLRIWMQY 126 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhHHHHHHHHHHHhcccccccCCHHHHHHHHHH
Confidence 3445667889999999873 23368999999996643 32 1235689999998 345568999999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHh
Q psy8682 854 TELEMRNRQVNHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTL 921 (1956)
Q Consensus 854 adfE~k~gnierARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~f 921 (1956)
+++ + +..+.+|...... --+.+.+|..|+.+.+..|+.+.|..||.+++ .+...|-..|-.|
T Consensus 127 a~~---~---~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F 194 (223)
T 4aez_C 127 VNY---I---DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQF 194 (223)
T ss_dssp HTT---C---SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHH
T ss_pred HHc---c---CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 997 2 4667899998874 34458999999999999999999999999999 5666666677333
No 228
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=97.04 E-value=0.0016 Score=70.79 Aligned_cols=120 Identities=23% Similarity=0.328 Sum_probs=89.4
Q ss_pred HHHHHHHHhhc--CCCHHHHHHHHHHHHH---cCCHH-HHHHHHHHhhcc---------cCCCHHHHHHHHHHHHHcCCh
Q psy8682 799 RKAFEDNIRKN--RMVISNWIKYAQWEES---QKQVD-RARSIYERALDV---------DHRNITLWLKYTELEMRNRQV 863 (1956)
Q Consensus 799 R~lyEraL~~~--~~s~~lWlkYAqfE~~---~Gd~E-rARsIfERALs~---------~Pk~~dLWl~YadfE~k~gni 863 (1956)
|+.||..|... ..-..+|.+|++|-.. .|..+ .-..++||+++. +|+...||+.|+++ +++
T Consensus 3 r~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~~~~~s~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~---~~~- 78 (164)
T 2wvi_A 3 KRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGRL---CNE- 78 (164)
T ss_dssp THHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC----CCHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHHH---CSC-
T ss_pred HHHHHHHHhhcCCCCChHHHHHHHHHHHHHCcCCCccchHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHHh---cCC-
Confidence 35688777643 2226899999999654 23322 346799999983 45558999999998 333
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhc----cCchHHHHHHHHhhcc
Q psy8682 864 NHARNLWDRAVTI--LPRANQFWYKYTYMEEMLENVAGKLFVFHRDS----ISQVTLWLGALTLSLE 924 (1956)
Q Consensus 864 erARsLFERAL~~--~Pks~~LW~kYidfE~k~Gd~e~aR~VfERAL----~~~~~LWl~Yi~fEle 924 (1956)
.+.+|...... .-+.+.+|..|+.+.+..|+.+.|..||.+++ .+...|-..|-.|...
T Consensus 79 --p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R 143 (164)
T 2wvi_A 79 --PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQAR 143 (164)
T ss_dssp --HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 67889988773 34458999999999999999999999999999 6767788888666554
No 229
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=97.00 E-value=0.011 Score=66.08 Aligned_cols=139 Identities=10% Similarity=0.121 Sum_probs=101.2
Q ss_pred ccHHHHHHHHHHHHhh---CCCC-HHHHHHHHhhccCCCCCCCCCChHHhhH-HHHHHH-HHHHHHHhhcC---------
Q psy8682 746 DEYDKAVDCFRSALQV---RPDF-TELLVYLFSSLDFQPPKQKISDPDELRD-YQHRKR-KAFEDNIRKNR--------- 810 (1956)
Q Consensus 746 geyEkArelFerALkk---fP~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~-~~~RAR-~lyEraL~~~~--------- 810 (1956)
.+....+..|++.+.. ..+| -.+|.+|+....... ..... ...... .++|||++.+.
T Consensus 6 ~~l~~~r~~fE~~l~~~l~~~dDPL~~w~~YIkW~ee~y--------P~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~ 77 (202)
T 3esl_A 6 SQLNQTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSY--------IEVDSESGQEVLRSTMERCLIYIQDMETYRNDP 77 (202)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHH--------HHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCH
T ss_pred HHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHhC--------CCCCCcchhchHHHHHHHHHHHhcccccccCCH
Confidence 4556778888888776 3455 589999998765111 11110 011122 68899987542
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHH
Q psy8682 811 MVISNWIKYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKY 887 (1956)
Q Consensus 811 ~s~~lWlkYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kY 887 (1956)
...++|++||++. ..++....+.||.-+.+ .-.+...+|..|+.+....|++++|..||+.++...-.. ..|-.+|
T Consensus 78 RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~~ 156 (202)
T 3esl_A 78 RFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSL 156 (202)
T ss_dssp HHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHH
T ss_pred HHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHH
Confidence 2268999999985 23447789999998887 677889999999999999999999999999999965443 4677789
Q ss_pred HHHHHH
Q psy8682 888 TYMEEM 893 (1956)
Q Consensus 888 idfE~k 893 (1956)
-+|+.+
T Consensus 157 ~~F~~R 162 (202)
T 3esl_A 157 SNYEDR 162 (202)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 898876
No 230
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.78 E-value=0.004 Score=64.94 Aligned_cols=93 Identities=10% Similarity=0.006 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH---HHHHHHHHHhhC-C-CcHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE---AVEAYHTALQLS-P-GFVRARYNLGITCVHLGANTQAVEH 1853 (1956)
Q Consensus 1779 yeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeE---Aie~yeKALeL~-P-dnaeA~~~LA~ay~klGdyEEAie~ 1853 (1956)
...+...|.+.+..++....+.+++|.++.+..+... ++.+++..+... | ..-+.++.||..++++|+|++|+.+
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 4456667777777777778888888888888777665 888888877765 4 4566888888889999999999999
Q ss_pred HHHHHHhcCCChhchhcc
Q psy8682 1854 FLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1854 yekALeLdPdn~dA~~~L 1871 (1956)
++.+|+.+|+|..+....
T Consensus 97 ~~~lL~~eP~n~QA~~Lk 114 (126)
T 1nzn_A 97 VRGLLQTEPQNNQAKELE 114 (126)
T ss_dssp HHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHH
Confidence 999999999888765544
No 231
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=96.68 E-value=0.014 Score=66.22 Aligned_cols=133 Identities=10% Similarity=0.151 Sum_probs=96.9
Q ss_pred cHHHHHHHHHHHHhh--CCCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC---------CHH
Q psy8682 747 EYDKAVDCFRSALQV--RPDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM---------VIS 814 (1956)
Q Consensus 747 eyEkArelFerALkk--fP~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~---------s~~ 814 (1956)
..++.+..|++.+.- ..+| -.+|.+|+.......|.-.. ... .-..++|+|++.+.. ..+
T Consensus 50 ~l~~~r~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~-~~s-------~L~~lLErc~~~F~~~~rYknD~RyLk 121 (223)
T 4aez_C 50 GLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGET-KTS-------GLVTLLERCTREFVRNPLYKDDVRYLR 121 (223)
T ss_dssp HHHHHHHHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCC-TTT-------CHHHHHHHHHHHTTTCGGGTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCc-chh-------hHHHHHHHHHHHhcccccccCCHHHHH
Confidence 466788888888864 2334 68999999887744432110 000 123578888876522 268
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q psy8682 815 NWIKYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKYTYME 891 (1956)
Q Consensus 815 lWlkYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kYidfE 891 (1956)
+|++||++. +..+.||.-+.+ +-.+...+|..|+.+....|++++|..||+.++...-.- ..|-.+|-.|+
T Consensus 122 lWl~Ya~~~------~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~ 195 (223)
T 4aez_C 122 IWMQYVNYI------DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRFQQKYQQFT 195 (223)
T ss_dssp HHHHHHTTC------SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHHHHHHHHHHHH
T ss_pred HHHHHHHcc------CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHH
Confidence 999999962 466788888777 577888999999999999999999999999999976444 46667888887
Q ss_pred HH
Q psy8682 892 EM 893 (1956)
Q Consensus 892 ~k 893 (1956)
.+
T Consensus 196 ~R 197 (223)
T 4aez_C 196 HR 197 (223)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 232
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=96.57 E-value=0.016 Score=62.17 Aligned_cols=129 Identities=11% Similarity=0.178 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhC-CCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcC---------CCHHHHH
Q psy8682 749 DKAVDCFRSALQVR-PDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNR---------MVISNWI 817 (1956)
Q Consensus 749 EkArelFerALkkf-P~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~---------~s~~lWl 817 (1956)
..++..|+..+... .+| -.+|.+|+.......|. +. . .-..++|+|++.+. ...++|+
T Consensus 7 ~~~~~~fE~~i~~y~gdDPL~~w~~YI~W~e~~~P~---g~-~-------~l~~lLErc~~~f~~~~~YknD~RyLklWl 75 (152)
T 4a1g_A 7 ENVLQMLEAHMQSYKGNDPLGEWERYIQWVEENFPE---NK-E-------YLITLLEHLMKEFLDKKKYHNDPRFISYCL 75 (152)
T ss_dssp HHHHHHHHHHTTSCCSSCHHHHHHHHHHHHHTTCSS---CT-H-------HHHHHHHHHHHHHTTCGGGTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC---Cc-h-------hHHHHHHHHHHHhcccccccCCHHHHHHHH
Confidence 45677788877654 344 58999999988855442 21 1 13357788876541 2268999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy8682 818 KYAQWEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKYTYMEEML 894 (1956)
Q Consensus 818 kYAqfE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kYidfE~k~ 894 (1956)
+||++. . ..+.||.-+.+ +-.+...+|..|+.+....|++++|..||+.+++....- ..|-.+|-+|+.+.
T Consensus 76 ~ya~~~---~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~~~~~~F~~R~ 149 (152)
T 4a1g_A 76 KFAEYN---S---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRL 149 (152)
T ss_dssp HHHTTB---S---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHTC
T ss_pred HHHHhc---C---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHh
Confidence 999873 2 37899998887 577889999999999999999999999999999975544 46667888888653
No 233
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.02 E-value=0.041 Score=57.41 Aligned_cols=99 Identities=11% Similarity=-0.035 Sum_probs=81.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHCCCh
Q psy8682 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK---AVDCFRSALQVR-P-DDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1739 lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeE---Aie~fekALel~-P-dnaeA~~nLG~ay~qlGry 1813 (1956)
......+...|.+.+..++.+ ..+.+.+|.++.+..+... ++..++..+... | ..-+.++.||..++++|+|
T Consensus 14 ~~~l~~~~~~y~~e~~~~~~s---~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y 90 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGSVS---KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 90 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC---HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhccCCCc---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhH
Confidence 334556677778787777766 8999999999999887766 999999988876 4 4567899999999999999
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGIT 1840 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~a 1840 (1956)
++|..+++..|+..|++..+......+
T Consensus 91 ~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 91 EKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999999998876554433
No 234
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=95.83 E-value=0.051 Score=59.08 Aligned_cols=127 Identities=7% Similarity=0.150 Sum_probs=89.2
Q ss_pred HHHHHHHhhC-CCC-HHHHHHHHhhccCCCCCCCCCChHHhhHHHHHHHHHHHHHHhhcCC---------CHHHHHHHHH
Q psy8682 753 DCFRSALQVR-PDF-TELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRM---------VISNWIKYAQ 821 (1956)
Q Consensus 753 elFerALkkf-P~d-~~IWl~ylsfL~~~~~~~ki~d~Eea~~~~~RAR~lyEraL~~~~~---------s~~lWlkYAq 821 (1956)
..|+..+... .+| -.+|.+|+.......|. +..+ . .-..++|+|++.+.. ..++|++||+
T Consensus 4 ~~fE~~i~~~~gdDPL~~w~~yIkW~e~~~p~---~~~~-s-----~L~~lLErc~~~f~~~~~YknD~RyLklWl~ya~ 74 (164)
T 2wvi_A 4 RAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQ---GGKE-S-----NMSTLLERAVEALQGEKRYYSDPRFLNLWLKLGR 74 (164)
T ss_dssp HHHHHHCCCCCSSCTHHHHHHHHHHHHHHCCC--------C-----CHHHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCCChHHHHHHHHHHHHHCcC---CCcc-c-----hHHHHHHHHHHHhhhhhhhccCHHHHHHHHHHHH
Confidence 3466665422 233 58999999877643321 1111 0 123478888876522 2689999999
Q ss_pred HHHHcCCHHHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHc
Q psy8682 822 WEESQKQVDRARSIYERALD--VDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA-NQFWYKYTYMEEML 894 (1956)
Q Consensus 822 fE~~~Gd~ErARsIfERALs--~~Pk~~dLWl~YadfE~k~gnierARsLFERAL~~~Pks-~~LW~kYidfE~k~ 894 (1956)
+. ++ .+.||.-+.+ +..+...+|..|+.+....|++++|..||..++...... ..|-.+|-.|+.+.
T Consensus 75 ~~---~~---p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~L~~~~~~F~~R~ 144 (164)
T 2wvi_A 75 LC---NE---PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARV 144 (164)
T ss_dssp HC---SC---HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHHHHHHHHHH
T ss_pred hc---CC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 84 33 6678887777 577889999999999999999999999999999976443 46777888888764
No 235
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.65 E-value=0.029 Score=61.01 Aligned_cols=93 Identities=15% Similarity=0.145 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------C-
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN---------AEVWLSLGISLAENEQDPQAIAALSKCLSIE------P- 1670 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn---------aeAl~~LA~ay~~lGdyeEALe~yeKALeLd------P- 1670 (1956)
+++.....++..|.|+.|+.....++....++ ..++..+|.+++..++|.+|...|+++|+.. +
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 67788888889999999999888877653222 3478899999999999999999999987652 1
Q ss_pred ------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1671 ------------------KNLEALMAISICFTNEACLHDALDTLKDK 1699 (1956)
Q Consensus 1671 ------------------dnaeAl~~LA~aY~~lGdydEALe~leKA 1699 (1956)
.+.++.+.+|.||..++++++|+..++..
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11267899999999999999999998764
No 236
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.11 E-value=1.4 Score=56.95 Aligned_cols=77 Identities=9% Similarity=-0.110 Sum_probs=53.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q psy8682 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687 (1956)
Q Consensus 1608 ll~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lG 1687 (1956)
....+..+...|..++|+...+ ++... .......|++++|.+..+ ..++...|..+|..+...+
T Consensus 632 ~~~~~~~l~~~~~~~~a~~~~~--------~~~~~---f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 632 LTKIARFLEGQEYYEEALNISP--------DQDQK---FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHHHTTCHHHHHHHCC--------CHHHH---HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCChHHheecCC--------Ccchh---eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcC
Confidence 3556666777788888776553 22222 234567788888887753 2356778888999999999
Q ss_pred CHHHHHHHHHHHH
Q psy8682 1688 CLHDALDTLKDKI 1700 (1956)
Q Consensus 1688 dydEALe~leKAL 1700 (1956)
+++.|.++|.++-
T Consensus 696 ~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 696 NFKLAIEAFTNAH 708 (814)
T ss_dssp CHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcc
Confidence 9999988888764
No 237
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=95.10 E-value=0.052 Score=58.99 Aligned_cols=63 Identities=10% Similarity=0.030 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPKN---------LEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1640 eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdn---------aeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
.+++.-...++..|.|+.|+-....++.+..++ ..++..+|.+++..++|..|...|+++++.
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 356667778889999999999999877664222 247889999999999999999999999887
No 238
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.87 E-value=0.11 Score=54.48 Aligned_cols=78 Identities=14% Similarity=0.050 Sum_probs=68.5
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
.+.+.|+.|.++.+..+ ..+++.+++..++.+|. .-+.++.+|..++++|+|.+|..+.+.+++..|++..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 67899999999998874 45799999999999884 578999999999999999999999999999999999876554
Q ss_pred HH
Q psy8682 1680 SI 1681 (1956)
Q Consensus 1680 A~ 1681 (1956)
..
T Consensus 119 ~~ 120 (134)
T 3o48_A 119 SM 120 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=94.39 E-value=0.58 Score=60.50 Aligned_cols=100 Identities=16% Similarity=0.072 Sum_probs=58.3
Q ss_pred HHHHHcCChHHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Q psy8682 1613 QEKLRQGDLPSAIL-YLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691 (1956)
Q Consensus 1613 ~aylk~GdydEAIe-~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydE 1691 (1956)
......+++++|.. ++.. -+ +...+..++..+...|.+++|+...+ ++...+ ......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~--------~~~~~f---~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VE-GKDSLTKIARFLEGQEYYEEALNISP--------DQDQKF---ELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CC-CHHHHHHHHHHHHHTTCHHHHHHHCC--------CHHHHH---HHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhc----CC-chHHHHHHHHHHHhCCChHHheecCC--------Ccchhe---ehhhhcCCHHH
Confidence 34456788888866 4411 11 01223666666777777777765542 222222 23456777887
Q ss_pred HHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy8682 1692 ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752 (1956)
Q Consensus 1692 ALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekA 1752 (1956)
|.+..+. + .....|..+|..+...++++.|+.+|.++
T Consensus 671 A~~~~~~---~---------------------~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 671 ARDLLTD---E---------------------SAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHTT---C---------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHh---h---------------------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 7766432 1 11234666778888888888888877765
No 240
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=94.38 E-value=0.27 Score=52.30 Aligned_cols=77 Identities=14% Similarity=0.040 Sum_probs=68.2
Q ss_pred cHHHHHHHHHHHHHcCC---hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHH
Q psy8682 1604 NETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPD-NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679 (1956)
Q Consensus 1604 daeall~LG~aylk~Gd---ydEAIe~fekALeldPd-naeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~L 1679 (1956)
..++.|+.|.++.+..+ ..+++.+++..+...|. .-+.++.+|..++++|+|.+|..+.+.+|+..|++..+....
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 67899999999999874 55799999999999884 567999999999999999999999999999999998876544
Q ss_pred H
Q psy8682 1680 S 1680 (1956)
Q Consensus 1680 A 1680 (1956)
.
T Consensus 118 ~ 118 (144)
T 1y8m_A 118 S 118 (144)
T ss_dssp H
T ss_pred H
Confidence 3
No 241
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.87 E-value=0.37 Score=51.22 Aligned_cols=78 Identities=13% Similarity=0.064 Sum_probs=60.5
Q ss_pred CCCHHHHHHHHHHHHHCCCh---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchh
Q psy8682 1794 PDDSRLWNRLGASLANGNRP---EEAVEAYHTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869 (1956)
Q Consensus 1794 PdnaeA~~nLG~ay~qlGry---eEAie~yeKALeL~Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~ 1869 (1956)
.-...+.+++|.++.+..+. .+++..++..+...|. .-+.++.||..+.++|+|++|.++.+..|+.+|+|..+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~ 115 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 115 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence 44677888888888877654 4688888888887774 5567888888888888888888888888888888777654
Q ss_pred cc
Q psy8682 1870 PH 1871 (1956)
Q Consensus 1870 ~L 1871 (1956)
..
T Consensus 116 Lk 117 (144)
T 1y8m_A 116 LK 117 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 242
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.84 E-value=1.2 Score=54.81 Aligned_cols=173 Identities=10% Similarity=-0.012 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Q psy8682 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS-REIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1675 Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~-lGdyeEAle~LekAL 1753 (1956)
+.+.||.+|...|++++-.+++...... +..+.. ...+.....+-..+.. .+..+.-++....++
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~k----ak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~ 86 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPF----------LSSISK----AKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCI 86 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTG----------GGGSCH----HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH----------HHHhch----HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 5678888888888888888887765444 222220 1122223333333332 344555566666666
Q ss_pred HhCCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHCCChHHHHHHHHHHH
Q psy8682 1754 RQCPSQS---IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD------DSRLWNRLGASLANGNRPEEAVEAYHTAL 1824 (1956)
Q Consensus 1754 el~P~n~---~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pd------naeA~~nLG~ay~qlGryeEAie~yeKAL 1824 (1956)
+...... ....+-..+|.+|+..|+|.+|.+.+.+.++--.. ..+++.....+|..++++.++..+|.+|.
T Consensus 87 ~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 87 EWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5432220 01113347889999999999998888887763211 13556667788889999999999998887
Q ss_pred hhC----CC---cHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhc
Q psy8682 1825 QLS----PG---FVRARYNLGITCV-HLGANTQAVEHFLTALNQQ 1861 (1956)
Q Consensus 1825 eL~----Pd---naeA~~~LA~ay~-klGdyEEAie~yekALeLd 1861 (1956)
... +. .+.....-|..+. ..++|..|..+|-+++.-.
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence 542 11 2234556678888 7899999999988887544
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.40 E-value=0.23 Score=52.23 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHHCCCh---HHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhcc
Q psy8682 1796 DSRLWNRLGASLANGNRP---EEAVEAYHTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871 (1956)
Q Consensus 1796 naeA~~nLG~ay~qlGry---eEAie~yeKALeL~Pd-naeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~L 1871 (1956)
.+.+.+++|.++.+..+. .+++..++..+...|. .-+.++.||..+.++|+|++|.++.+.+|+.+|+|..+....
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk 118 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 118 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHH
Confidence 456777777777776544 3577777777777764 456778888888888888888888888888888877765544
Q ss_pred c
Q psy8682 1872 G 1872 (1956)
Q Consensus 1872 G 1872 (1956)
.
T Consensus 119 ~ 119 (134)
T 3o48_A 119 S 119 (134)
T ss_dssp H
T ss_pred H
Confidence 3
No 244
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=93.37 E-value=4.9 Score=52.07 Aligned_cols=127 Identities=9% Similarity=-0.066 Sum_probs=81.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
++.......+.+.|...+....+...-+ ......+..+|.-+...+...++...+.++.....++.. ...++....+.
T Consensus 220 ~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~e~~~r~Alr~ 298 (618)
T 1qsa_A 220 VAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSL-IERRVRMALGT 298 (618)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHH-HHHHHHHHHHC
Confidence 3444445558889998888876544333 001112222333333344356777777776655444333 33333344567
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
|+++.|...|++.-..........|.+|.++..+|+.++|..+|+++..
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 9999999999876553345677889999999999999999999998875
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.27 E-value=0.26 Score=64.96 Aligned_cols=116 Identities=16% Similarity=0.103 Sum_probs=86.3
Q ss_pred hcCC-HHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH--Hc-CCHHHHHHHHHHHHHh--------CCCC---------
Q psy8682 1738 SREI-HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFN--LS-DEYDKAVDCFRSALQV--------RPDD--------- 1796 (1956)
Q Consensus 1738 ~lGd-yeEAle~LekALel~P~n~~~a~a~~~LG~ly~--~l-GdyeEAie~fekALel--------~Pdn--------- 1796 (1956)
..++ ++.|+.++++..+.+|.. .+++..+.+.. .. .+--+|+..+.++++. .+.+
T Consensus 260 ~t~~~~~~a~~~le~L~~~~p~~----~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~ 335 (754)
T 4gns_B 260 ITPSLVDFTIDYLKGLTKKDPIH----DIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335 (754)
T ss_dssp TCGGGHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhhCCch----hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence 3445 688999999999998875 33333333322 12 2344678888777642 2222
Q ss_pred -HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1797 -SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA 1857 (1956)
Q Consensus 1797 -aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekA 1857 (1956)
...+..-+..+...|+++-|+++.++|+...|.....|+.|+.+|..+|+++.|+-.+..+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 2345556777889999999999999999999999999999999999999999998766544
No 246
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.21 E-value=0.61 Score=57.24 Aligned_cols=194 Identities=9% Similarity=0.028 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCCHH-----
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAE-----VWLSLGISLAE-NEQDPQAIAALSKCLSIEPKNLE----- 1674 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALeldPdnae-----Al~~LA~ay~~-lGdyeEALe~yeKALeLdPdnae----- 1674 (1956)
.+.+.+|..|...|++++-..++......-+.-+. ....+-..+.. -+..+.-++....+++...+.-.
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999998876544333222 22233333332 24455556666666654322211
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy8682 1675 -ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAA 1753 (1956)
Q Consensus 1675 -Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekAL 1753 (1956)
.-..+|.+|...|+|.+|...+.+..+.....+. .....+.+..-..+|...+++.++...|.++.
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd-------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~ 166 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDD-------------KNLLVEVQLLESKTYHALSNLPKARAALTSAR 166 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC-------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcccc-------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 2237899999999999999999998876211111 13456677788899999999999999999997
Q ss_pred HhC----CCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC--C---HHHHHHHHHHHHHCCC
Q psy8682 1754 RQC----PSQSIDPDVQNGLGVLFN-LSDEYDKAVDCFRSALQVRPD--D---SRLWNRLGASLANGNR 1812 (1956)
Q Consensus 1754 el~----P~n~~~a~a~~~LG~ly~-~lGdyeEAie~fekALel~Pd--n---aeA~~nLG~ay~qlGr 1812 (1956)
... +.....+.+...-|.++. ..++|.+|..+|-++++.... . ..+...++.+-...++
T Consensus 167 ~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 167 TTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 653 111123445566788888 899999999999999754322 1 2334445555555555
No 247
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=92.59 E-value=14 Score=40.42 Aligned_cols=221 Identities=14% Similarity=0.110 Sum_probs=126.9
Q ss_pred HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q psy8682 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695 (1956)
Q Consensus 1616 lk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~ 1695 (1956)
++-.+|+.++-+-.- +.|..++.-..++.+++-.|.|..|+-++.. -+...+.+..+.||...++|..|+..
T Consensus 13 ~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~ 84 (242)
T 3kae_A 13 IRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKS 84 (242)
T ss_dssp HHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677776544332 2344556677888899999999998876642 35566778888999999999999999
Q ss_pred HHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Q psy8682 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775 (1956)
Q Consensus 1696 leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~ 1775 (1956)
++..+.-..+.+|+...-.+..... ..+....+..+|.++...|+-++|+.++.......|-. +.+-+.+ |..
T Consensus 85 le~il~~kvd~d~~~d~~~~~ffvd-~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf---~~vEnli---yeN 157 (242)
T 3kae_A 85 LESILEGKVERDPDVDARIQEMFVD-PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLF---SPVENLL---LEN 157 (242)
T ss_dssp HHHHHTTCSBCCCCCCHHHHTTSCC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH---HHHHHHH---HTT
T ss_pred HHHHHhcccccCcccccccceeeec-cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCcccc---chHHHHH---hhc
Confidence 9999965445567633222222111 12333445668999999999999999999998887764 2222111 111
Q ss_pred ----cCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHH-HHHHHHHHHHcCCHH
Q psy8682 1776 ----SDEYDKAVDCFRSALQVRPDDSR--LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA-RYNLGITCVHLGANT 1848 (1956)
Q Consensus 1776 ----lGdyeEAie~fekALel~Pdnae--A~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA-~~~LA~ay~klGdyE 1848 (1956)
..+.+. .+..+..+.. -+......+..... ...++-...-|..... ....+..|..+|-.+
T Consensus 158 ~vp~~~d~~~-------i~~~~~~~i~~~y~~d~~~lHe~~s~-----~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d 225 (242)
T 3kae_A 158 KVPQKRDKEN-------VRQTGRRGIEEEYVSDSIEFHESLSP-----SLVKKYMEHVPGIGSYFISNAARRYFNLGMND 225 (242)
T ss_dssp CCCCCC------------------CHHHHHHHHHHHHHHHCCH-----HHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHH-------HHhhhhccchhhhhhhHHHHHHhccH-----HHHHHHHHhCCCchhHHHHHHHHHHHhcccch
Confidence 000000 0000011100 00011111111111 2333334445654432 235567788889999
Q ss_pred HHHHHHHHHHHhcCC
Q psy8682 1849 QAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1849 EAie~yekALeLdPd 1863 (1956)
+...+|...-+.+|.
T Consensus 226 ~s~~lf~~lR~kDP~ 240 (242)
T 3kae_A 226 KSKACFELVRRKDPM 240 (242)
T ss_dssp HHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHhcCCC
Confidence 999999888888885
No 248
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=91.41 E-value=9.8 Score=41.65 Aligned_cols=91 Identities=12% Similarity=0.086 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--C---------------
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--E--------------- 1669 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--d--------------- 1669 (1956)
--+.++..++-.|.|..|+-.+.. -+...+.+..+.||...++|..|+..++..+.- +
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd 109 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD 109 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred HHhhhhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence 567789999999999999887753 356788899999999999999999999999932 2
Q ss_pred CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1670 PKNLE-ALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1670 Pdnae-Al~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
|.+.+ .+..+|.++...|+.++|+.++......
T Consensus 110 ~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 110 PGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 33333 3567899999999999999999998877
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.48 E-value=1.2 Score=59.00 Aligned_cols=59 Identities=15% Similarity=0.166 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKA 1823 (1956)
.+..-+..+...|+|+-|+++.++|+...|.....|..|+.+|..+|+|+.|+-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 45555777788999999999999999999999999999999999999999999776654
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.44 E-value=11 Score=46.65 Aligned_cols=174 Identities=10% Similarity=-0.027 Sum_probs=114.4
Q ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-HcCChHHHHHHHHHHHHhC----C-----
Q psy8682 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL---A-ENEQDPQAIAALSKCLSIE----P----- 1670 (1956)
Q Consensus 1604 daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay---~-~lGdyeEALe~yeKALeLd----P----- 1670 (1956)
...++..+...+...|+++...+.+.-..+.......+...+.... . .....+. ......+..- .
T Consensus 55 ~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~~d~--~~~~~~i~~l~~vte~kifl 132 (445)
T 4b4t_P 55 SKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKSLDL--NTRISVIETIRVVTENKIFV 132 (445)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCTTHH--HHHHHHHHCCSSSSSCCCCC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH--HHHHHHHHHHHHHhccchHH
Confidence 5678888889999999999988887766555443333322222211 1 1222221 1112222211 0
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHH
Q psy8682 1671 --KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL 1748 (1956)
Q Consensus 1671 --dnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~ 1748 (1956)
........|+.+|...|++.+|...+.....-. +. .. ........+.....+|...+++.+|...
T Consensus 133 E~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et---------~~-~~---~~~~kve~~l~q~rl~l~~~d~~~a~~~ 199 (445)
T 4b4t_P 133 EVERARVTKDLVEIKKEEGKIDEAADILCELQVET---------YG-SM---EMSEKIQFILEQMELSILKGDYSQATVL 199 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH---------CS-SS---CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH---------Hh-cc---cHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 023455789999999999999999999876441 11 11 0234566777888999999999999999
Q ss_pred HHHHHHh---CCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1749 YLNAARQ---CPSQ-SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1749 LekALel---~P~n-~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
++++... .+.. ......+...|.++...++|.+|-.+|.+++..
T Consensus 200 ~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 200 SRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 9987431 2222 123456778899999999999999999998864
No 251
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.37 E-value=2.4 Score=51.65 Aligned_cols=96 Identities=14% Similarity=0.028 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDN----------------------AEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdn----------------------aeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
.+...|......|+.+.|...+++|+.+.... ..+...++..+...|++.+|+..+.+
T Consensus 117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~ 196 (388)
T 2ff4_A 117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA 196 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34445555666789999999999999874321 12445667788899999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1665 ALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
++..+|-+..++..+..+|...|+..+|+..|+++-+.
T Consensus 197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988665
No 252
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=89.88 E-value=2.3 Score=51.74 Aligned_cols=112 Identities=7% Similarity=-0.040 Sum_probs=70.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHC
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA-VDCFRSALQVRPDDSRLWNRLGASLANG 1810 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEA-ie~fekALel~PdnaeA~~nLG~ay~ql 1810 (1956)
.|......|+.+.|...+.+|+.+.... .-+... ...+-.+ ...+++.. ..+...++.++...
T Consensus 121 ~~~~~~~~~~~~~a~~~l~~Al~L~rG~-~L~~~~---------~~~w~~~~r~~l~~~~------~~a~~~~~~~~l~~ 184 (388)
T 2ff4_A 121 AGVHAAAAGRFEQASRHLSAALREWRGP-VLDDLR---------DFQFVEPFATALVEDK------VLAHTAKAEAEIAC 184 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSS-TTGGGT---------TSTTHHHHHHHHHHHH------HHHHHHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcCCC-CCCCCC---------chhHHHHHHHHHHHHH------HHHHHHHHHHHHHC
Confidence 3444456789999999999999987654 111100 0111111 11111111 12344566677777
Q ss_pred CChHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy8682 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1811 GryeEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekALe 1859 (1956)
|++.+|+..+.+++..+|-+-.++..+..+|...|+..+|+..|+++-+
T Consensus 185 g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 185 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888888888878887777777778888888888888777776644
No 253
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.65 E-value=15 Score=45.68 Aligned_cols=198 Identities=14% Similarity=-0.002 Sum_probs=124.9
Q ss_pred CChHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHH---H-HcCC
Q psy8682 1619 GDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF---T-NEAC 1688 (1956)
Q Consensus 1619 GdydEAIe~fekALel------dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY---~-~lGd 1688 (1956)
|++++|++.+...-+. .+....+...+..++...|+++...+.+.-..+.......+...+.... . ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~ 109 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS 109 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence 6788888877554432 2334678888899999999999888877665554444333332222211 1 1121
Q ss_pred HHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCC--CCCHHH
Q psy8682 1689 LHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC-PSQ--SIDPDV 1765 (1956)
Q Consensus 1689 ydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~-P~n--~~~a~a 1765 (1956)
.+. ......+..-.....+ ..|.. ...+.....|+.++...|++.+|...+.....-. ... .....+
T Consensus 110 ~d~--~~~~~~i~~l~~vte~-kiflE-------~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~ 179 (445)
T 4b4t_P 110 LDL--NTRISVIETIRVVTEN-KIFVE-------VERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQF 179 (445)
T ss_dssp THH--HHHHHHHHCCSSSSSC-CCCCC-------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred hhH--HHHHHHHHHHHHHhcc-chHHH-------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 111 1112222220000000 00110 1245556789999999999999999999886431 111 123567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCH----HHHHHHHHHHHHCCChHHHHHHHHHHHhh
Q psy8682 1766 QNGLGVLFNLSDEYDKAVDCFRSALQ---VRPDDS----RLWNRLGASLANGNRPEEAVEAYHTALQL 1826 (1956)
Q Consensus 1766 ~~~LG~ly~~lGdyeEAie~fekALe---l~Pdna----eA~~nLG~ay~qlGryeEAie~yeKALeL 1826 (1956)
+....++|...+++.+|...++++.. ..+..+ ..+...|.++...++|.+|..+|..++..
T Consensus 180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 78888999999999999999998743 223333 45667899999999999999999998763
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=87.51 E-value=1.8 Score=54.61 Aligned_cols=81 Identities=17% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q psy8682 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805 (1956)
Q Consensus 1726 a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ 1805 (1956)
...+..+|++......+..|..+|.+|..+.|.+ ...++.||.+....|+.-+|+-+|-+++......+.+..++..
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~---G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~ 228 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN---GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQK 228 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB---SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC---CchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHH
Confidence 4566789999999999999999999999999998 8999999999999999999999999999888778899999988
Q ss_pred HHHH
Q psy8682 1806 SLAN 1809 (1956)
Q Consensus 1806 ay~q 1809 (1956)
.+..
T Consensus 229 ~f~~ 232 (497)
T 1ya0_A 229 ALSK 232 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7754
No 255
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.48 E-value=8 Score=45.18 Aligned_cols=123 Identities=15% Similarity=0.098 Sum_probs=88.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
..+.+.|++++|++.+...++.+|.+ +.....+..+++-.|+++.|.+.++.+.+++|.....-..+..+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~d---a~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKD---ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH------
Confidence 45678899999999999999999999 999999999999999999999999999999998654322211110
Q ss_pred HHHHHHHHHHHh--hCC---CcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChh
Q psy8682 1814 EEAVEAYHTALQ--LSP---GFVR---ARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866 (1956)
Q Consensus 1814 eEAie~yeKALe--L~P---dnae---A~~~LA~ay~klGdyEEAie~yekALeLdPdn~d 1866 (1956)
.|...=.+.+. ..| ..+. ....-+......|+.++|...-.+|++..|..+.
T Consensus 76 -~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 76 -KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp -HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred -HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 11111111221 111 1222 3334455667789999999999999999887554
No 256
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=84.28 E-value=3.6 Score=51.94 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHHHHHH
Q psy8682 1763 PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842 (1956)
Q Consensus 1763 a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA~ay~ 1842 (1956)
...+..||.+......++.|..+|.+|+.+.|++...++.||.+....|+.-+|+-+|-+++......+.+..+|...+.
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~ 231 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999887778888888888876
Q ss_pred H
Q psy8682 1843 H 1843 (1956)
Q Consensus 1843 k 1843 (1956)
+
T Consensus 232 ~ 232 (497)
T 1ya0_A 232 K 232 (497)
T ss_dssp H
T ss_pred H
Confidence 5
No 257
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.75 E-value=81 Score=40.88 Aligned_cols=257 Identities=11% Similarity=-0.055 Sum_probs=145.9
Q ss_pred HHHHHHHhCCCCHHHHHHHHHH---HHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Q psy8682 1627 YLEAAAKQEPDNAEVWLSLGIS---LAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPG 1703 (1956)
Q Consensus 1627 ~fekALeldPdnaeAl~~LA~a---y~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg 1703 (1956)
-+...++.+|+.+..-...... +.+.+++..-+..|.. .|.+....+..+.+....|+..+|.....++-..+
T Consensus 57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~ 132 (618)
T 1qsa_A 57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG 132 (618)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Confidence 4445567788887654444433 3345677666654443 37888888888888999999888888777776652
Q ss_pred CCCCCC-ch-hhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHH-------------HHHhCCCCC--------
Q psy8682 1704 QESNPR-PS-AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN-------------AARQCPSQS-------- 1760 (1956)
Q Consensus 1704 ~e~dPd-~e-ay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~Lek-------------ALel~P~n~-------- 1760 (1956)
...|+ .. .+....... ......+.......+..|+...|..+... ++..+|...
T Consensus 133 -~~~p~~c~~l~~~~~~~g--~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~~~~~~~~~ 209 (618)
T 1qsa_A 133 -KSQPNACDKLFSVWRASG--KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTG 209 (618)
T ss_dssp -SCCCTHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSC
T ss_pred -CCCcHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhHHHHHhccC
Confidence 22344 11 111111000 01122233344555555655555444332 122334320
Q ss_pred --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHH
Q psy8682 1761 --IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL----WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834 (1956)
Q Consensus 1761 --~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA----~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~ 1834 (1956)
........++.......+.+.|...+........-+... +..+|.-+...+...++...+.++.....++....
T Consensus 210 ~~~~~~~~~~~~~~rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 289 (618)
T 1qsa_A 210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE 289 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHH
Confidence 000112223444445568889999988876544333322 22333334445546788888888766554443333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccchhhhcccHHHHHHHHHhc
Q psy8682 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGF 1892 (1956)
Q Consensus 1835 ~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~~~lg~~seAIws~Lr~A 1892 (1956)
.++....+.|+++.|..+|...-.-....+...+-+|.++...|+..++- ..++.+
T Consensus 290 -~~~r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~-~~~~~~ 345 (618)
T 1qsa_A 290 -RRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAK-EILHQL 345 (618)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHH-HHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHH-HHHHHH
Confidence 33344556799999999998765544455677888898888888876654 344433
No 258
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=83.71 E-value=26 Score=48.41 Aligned_cols=148 Identities=5% Similarity=-0.092 Sum_probs=92.0
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------------------
Q psy8682 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI--------------------- 1668 (1956)
Q Consensus 1610 ~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL--------------------- 1668 (1956)
.+...+...+.++-|.. .+...|.++...+.+|.++...|++++|..+|+++..-
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~ 892 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY 892 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence 34445666677765544 33455677777788888888888888888888776221
Q ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHH
Q psy8682 1669 --EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVL 1746 (1956)
Q Consensus 1669 --dPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAl 1746 (1956)
....+..|..+..++...+.++.+++..+.|++.. .++. .......+.++-..+...|+|++|.
T Consensus 893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~---~~~~-----------~~~~~~l~~~iFk~~L~l~~ye~Ay 958 (1139)
T 4fhn_B 893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASK---ETDD-----------EDLSIAITHETLKTACAAGKFDAAH 958 (1139)
T ss_dssp TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHC---CSCC-----------HHHHHHHHHHHHHHHHHHCCSGGGG
T ss_pred cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---cCCC-----------hhhHHHHHHHHHHHHHhhCCHHHHH
Confidence 01122446677778888899999999999888761 1110 0011224566777888889999987
Q ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCH
Q psy8682 1747 SLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY 1779 (1956)
Q Consensus 1747 e~LekALel~P~n~~~a~a~~~LG~ly~~lGdy 1779 (1956)
..+...-... .....+..+...++..|..
T Consensus 959 ~aL~~~pd~~----~r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 959 VALMVLSTTP----LKKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp HHHHHHHHSS----SCHHHHHHHHHHHHHHCCH
T ss_pred HHHHhCCCHH----HHHHHHHHHHHHHHhCCCh
Confidence 7775443211 2245555555555555544
No 259
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=83.55 E-value=14 Score=40.52 Aligned_cols=42 Identities=14% Similarity=0.124 Sum_probs=17.8
Q ss_pred cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy8682 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664 (1956)
Q Consensus 1618 ~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeK 1664 (1956)
.|+++.|.+..+.+ ++...|..+|......|+++-|..+|.+
T Consensus 18 lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~ 59 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQT 59 (177)
T ss_dssp TTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 34444444443332 2333444444444444444444444433
No 260
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=83.39 E-value=7.2 Score=53.08 Aligned_cols=100 Identities=9% Similarity=-0.016 Sum_probs=82.7
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQ-----CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR-PDDS 1797 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel-----~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~-Pdna 1797 (1956)
.....+..+...|.+.|+.++|..+|.+..+. .|+ ..+|+.+...|++.|+.++|.+.|++..... .-+.
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd----vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDv 200 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT----LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC----HhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcH
Confidence 45567788899999999999999999886532 343 7889999999999999999999999988754 3467
Q ss_pred HHHHHHHHHHHHCCCh-HHHHHHHHHHHhhC
Q psy8682 1798 RLWNRLGASLANGNRP-EEAVEAYHTALQLS 1827 (1956)
Q Consensus 1798 eA~~nLG~ay~qlGry-eEAie~yeKALeL~ 1827 (1956)
.+|+.+-.++.+.|+. ++|.++|+++.+..
T Consensus 201 vTYntLI~glcK~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence 8888888899998885 68889999998753
No 261
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=82.55 E-value=19 Score=49.25 Aligned_cols=108 Identities=12% Similarity=0.020 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHH
Q psy8682 1606 TNAFALGQEKLRQGDLPSAILYLEAAAKQ----EPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE-PKNLEALMAIS 1680 (1956)
Q Consensus 1606 eall~LG~aylk~GdydEAIe~fekALel----dPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLd-PdnaeAl~~LA 1680 (1956)
..+..+-..|.+.|+.++|..+|.+..+. -.-+...|..+-..|.+.|+.++|.++|++..+.. .-+...|..+.
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 46778889999999999999999776432 23478899999999999999999999999998764 34666888898
Q ss_pred HHHHHcCC-HHHHHHHHHHHHhcCCCCCCCchhhhh
Q psy8682 1681 ICFTNEAC-LHDALDTLKDKIRPGQESNPRPSAYKA 1715 (1956)
Q Consensus 1681 ~aY~~lGd-ydEALe~leKALelg~e~dPd~eay~~ 1715 (1956)
.++.+.|+ .++|.++++++.+. +..|+...|..
T Consensus 208 ~glcK~G~~~e~A~~Ll~EM~~k--G~~PD~vtY~~ 241 (1134)
T 3spa_A 208 QCMGRQDQDAGTIERCLEQMSQE--GLKLQALFTAV 241 (1134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHH--TCCSHHHHHHS
T ss_pred HHHHhCCCcHHHHHHHHHHHHHc--CCCCChhhccc
Confidence 99999998 57899999999987 34566333333
No 262
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=82.13 E-value=15 Score=40.34 Aligned_cols=103 Identities=6% Similarity=-0.108 Sum_probs=66.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCh
Q psy8682 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP 1813 (1956)
Q Consensus 1734 ~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGry 1813 (1956)
.+....|+++.|.+..+.. ++ ...|..+|......|+++-|+.+|.++-. +..+..+|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~---~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----ND---SITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CC---HHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CC---HHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCH
Confidence 4556889999998887654 44 67899999999999999999999988522 22344445555655
Q ss_pred HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy8682 1814 EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTA 1857 (1956)
Q Consensus 1814 eEAie~yeKALeL~PdnaeA~~~LA~ay~klGdyEEAie~yekA 1857 (1956)
+.-.+.-+.+..... +.....++..+|+++++++.|.+.
T Consensus 77 e~L~kla~iA~~~g~-----~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED-----FGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc-----HHHHHHHHHHcCCHHHHHHHHHHC
Confidence 544444443333221 122234456677777777777543
No 263
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=81.21 E-value=7.1 Score=45.59 Aligned_cols=129 Identities=18% Similarity=0.102 Sum_probs=79.1
Q ss_pred HHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Q psy8682 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDA 1692 (1956)
Q Consensus 1613 ~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEA 1692 (1956)
..+++.|+.++|+......++.+|.++.....+..+++-.|++++|.+.++.+.+++|+....-..+..+ -.|
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l-------I~a 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL-------VKA 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH-------HHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH-------HHH
Confidence 3566788888899888888888898888888888888888999999888888888888765432111111 111
Q ss_pred HHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1693 LDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759 (1956)
Q Consensus 1693 Le~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n 1759 (1956)
...=.+.+.- ...|. +.. .+..-.....-+......|+.++|..+-.++++..|..
T Consensus 78 E~~R~~vfaG--~~~P~------~~g---~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~ 133 (273)
T 1zbp_A 78 AQARKDFAQG--AATAK------VLG---ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEK 133 (273)
T ss_dssp HHHHHHHTTS--CCCEE------CCC---SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHcC--CCCCC------CCC---CCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCccc
Confidence 1111222221 11222 110 01111122233455556788888888888887776654
No 264
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.58 E-value=4.6 Score=51.17 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=57.5
Q ss_pred hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q psy8682 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ----SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD 1796 (1956)
Q Consensus 1724 e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n----~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn 1796 (1956)
..+..+..+-..|...+.++.|..+..++. .|.. ......++.+|+++..+++|.+|.+++..|+...|.+
T Consensus 229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 229 TKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred hhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 345566778899999999999999999984 4532 1224567889999999999999999999999988754
No 265
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.15 E-value=6.9 Score=48.21 Aligned_cols=100 Identities=10% Similarity=-0.056 Sum_probs=80.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCH----HHHH
Q psy8682 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR--PDDS----RLWN 1801 (1956)
Q Consensus 1728 a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~--Pdna----eA~~ 1801 (1956)
++..+|..|...|++++|.++|.++.............+..+.+++...+++..+...+.++.... ..++ ....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 456789999999999999999999988755443457888888999999999999999999987653 2222 3344
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1802 RLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1802 nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
..|.++...++|.+|...|-.++...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 56778888999999999999887653
No 266
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=75.77 E-value=3.9 Score=50.43 Aligned_cols=102 Identities=10% Similarity=-0.019 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy8682 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754 (1956)
Q Consensus 1675 Al~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALe 1754 (1956)
++..+|..|...|++++|.+.|.++... ... .......+..+..++...+++..+...+.++..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~----~~~------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSK----AIS------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHH----HTC------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh----cCC------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4555666666666666666666655544 111 112334455555556666666666666666544
Q ss_pred hCCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q psy8682 1755 QCPSQ---SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792 (1956)
Q Consensus 1755 l~P~n---~~~a~a~~~LG~ly~~lGdyeEAie~fekALel 1792 (1956)
..... ..........|.++...++|.+|...|-.++..
T Consensus 197 ~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 197 MIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 32211 001123334455555666666666666666544
No 267
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=75.06 E-value=29 Score=47.96 Aligned_cols=56 Identities=11% Similarity=-0.037 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy8682 1642 WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIR 1701 (1956)
Q Consensus 1642 l~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~~lGdydEALe~leKALe 1701 (1956)
...+...+...+.++-|.+ .+...|.++...+.+|.++...|++++|..+|+++..
T Consensus 815 ~~~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~ 870 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL 870 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence 3345556777788776654 4456788888889999999999999999999998754
No 268
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.21 E-value=5.4 Score=50.55 Aligned_cols=130 Identities=11% Similarity=0.031 Sum_probs=61.5
Q ss_pred HHHhcCCHHHHHHHHHHHHH---h---CCCC--CCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHh----
Q psy8682 1735 PLSSREIHQQVLSLYLNAAR---Q---CPSQ--SIDPDVQNGLGVLFNLSDEYDKAV----------DCFRSALQV---- 1792 (1956)
Q Consensus 1735 ay~~lGdyeEAle~LekALe---l---~P~n--~~~a~a~~~LG~ly~~lGdyeEAi----------e~fekALel---- 1792 (1956)
.++..+++++|.++-...+. + +... ...+.+|+..+.++...|+..... ..+-.+++.
T Consensus 145 ~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~lr 224 (523)
T 4b4t_S 145 FLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIASLK 224 (523)
T ss_dssp ----------------------------------------------------------CHHHHHHHHTHHHHHHHHCCSC
T ss_pred HHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHhcc
Confidence 34567888888887765541 1 1111 234677888888888888766532 233333332
Q ss_pred -CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC
Q psy8682 1793 -RPD-DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------FVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863 (1956)
Q Consensus 1793 -~Pd-naeA~~nLG~ay~qlGryeEAie~yeKALeL~Pd-------naeA~~~LA~ay~klGdyEEAie~yekALeLdPd 1863 (1956)
+.. .+.+++.+-..|...+.|+.|..+..++. .|. ....++.+|.++.-.++|.+|.+++..|+...|.
T Consensus 225 ~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 225 HDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp SSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred cCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 222 24667788899999999999999999985 332 1456788999999999999999999999999887
Q ss_pred Chh
Q psy8682 1864 THD 1866 (1956)
Q Consensus 1864 n~d 1866 (1956)
+..
T Consensus 303 ~~~ 305 (523)
T 4b4t_S 303 NSK 305 (523)
T ss_dssp SSS
T ss_pred chh
Confidence 654
No 269
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=69.00 E-value=2e+02 Score=34.58 Aligned_cols=25 Identities=0% Similarity=-0.205 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLY 1749 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~L 1749 (1956)
.+..+..+|..|.+.+++.+|..+|
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4566778899999999999998887
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=65.50 E-value=2.2e+02 Score=33.80 Aligned_cols=26 Identities=12% Similarity=0.023 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy8682 1725 LANHTLTFRSPLSSREIHQQVLSLYL 1750 (1956)
Q Consensus 1725 ~a~a~lnLA~ay~~lGdyeEAle~Le 1750 (1956)
.+..+..+|..|...+++.+|..+|-
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 45667888999999999998888774
No 271
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=62.55 E-value=27 Score=47.40 Aligned_cols=10 Identities=10% Similarity=0.687 Sum_probs=7.0
Q ss_pred hhhHHHHHHh
Q psy8682 1138 NEQLLGEFWE 1147 (1956)
Q Consensus 1138 ~~~~~~~~~~ 1147 (1956)
-.++|.+||.
T Consensus 39 l~~~vd~~w~ 48 (963)
T 4ady_A 39 INNVVDQLWS 48 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhhHH
Confidence 3567888884
No 272
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=58.28 E-value=74 Score=43.24 Aligned_cols=215 Identities=10% Similarity=0.096 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q psy8682 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA--EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFT 1684 (1956)
Q Consensus 1607 all~LG~aylk~GdydEAIe~fekALeldPdna--eAl~~LA~ay~~lGdyeEALe~yeKALeLdPdnaeAl~~LA~aY~ 1684 (1956)
+.+.+|.++.-.++ +++...+..++..+.... .+-+.+|.++...|+-+....++..+.+...+.......+|..+.
T Consensus 457 AaLGLGla~~GS~~-eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll 535 (963)
T 4ady_A 457 ASLGIGLAAMGSAN-IEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALI 535 (963)
T ss_dssp HHHHHHHHSTTCCC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 56677777766655 567777777776443211 345567788888888776666666666543333333344555555
Q ss_pred HcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHH
Q psy8682 1685 NEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD 1764 (1956)
Q Consensus 1685 ~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle~LekALel~P~n~~~a~ 1764 (1956)
..|+.+.+-...+..... .+ .. ....+.+.+|.+|...|+......++..+.. ++.+ ...
T Consensus 536 ~~g~~e~~~~li~~L~~~-----~d-----p~-------vRygaa~alglAyaGTGn~~aIq~LL~~~~~-d~~d--~VR 595 (963)
T 4ady_A 536 NYGRQELADDLITKMLAS-----DE-----SL-------LRYGGAFTIALAYAGTGNNSAVKRLLHVAVS-DSND--DVR 595 (963)
T ss_dssp TTTCGGGGHHHHHHHHHC-----SC-----HH-------HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-CSCH--HHH
T ss_pred hCCChHHHHHHHHHHHhC-----CC-----HH-------HHHHHHHHHHHHhcCCCCHHHHHHHHHHhcc-CCcH--HHH
Confidence 678877776666665543 11 11 1223445678888999997655556666654 3332 122
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--CCC-hHHHHHHHHHHHhhCCCcH---HHHHHHH
Q psy8682 1765 VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN--GNR-PEEAVEAYHTALQLSPGFV---RARYNLG 1838 (1956)
Q Consensus 1765 a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~q--lGr-yeEAie~yeKALeL~Pdna---eA~~~LA 1838 (1956)
-...+|..+...|+.+.+...+..... ..++.+.+..+.++.. .|+ ..+|+..+.+... +++.. .+...||
T Consensus 596 raAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~-D~d~~Vrq~Ai~ALG 672 (963)
T 4ady_A 596 RAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK-DPVDFVRQAAMIALS 672 (963)
T ss_dssp HHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT-CSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc-CCCHHHHHHHHHHHH
Confidence 223333334445665444444332222 2345555444443332 333 3678887777754 33322 2455555
Q ss_pred HHHHHcC
Q psy8682 1839 ITCVHLG 1845 (1956)
Q Consensus 1839 ~ay~klG 1845 (1956)
.+.....
T Consensus 673 ~Ig~gtn 679 (963)
T 4ady_A 673 MILIQQT 679 (963)
T ss_dssp HHSTTCC
T ss_pred HHhcCCc
Confidence 5554433
No 273
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=57.56 E-value=1.9e+02 Score=34.42 Aligned_cols=66 Identities=18% Similarity=0.123 Sum_probs=43.8
Q ss_pred CCHHHHHHHHHHHHHCCChHHHHHHHHHHH---------------hh----CCCcHHHHHHHH-HHHHHcCCHHHHHHHH
Q psy8682 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTAL---------------QL----SPGFVRARYNLG-ITCVHLGANTQAVEHF 1854 (1956)
Q Consensus 1795 dnaeA~~nLG~ay~qlGryeEAie~yeKAL---------------eL----~PdnaeA~~~LA-~ay~klGdyEEAie~y 1854 (1956)
.++..+..+|..|.+.|++.+|..+|-..- +. .|.....+...+ ..|..+|+...|...|
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf~~RaVL~yL~l~n~~~A~~~~ 211 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEFFSRLVFNYLFISNISFAHESK 211 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 578888888888888888888888763210 11 122233333333 3467889999999998
Q ss_pred HHHHHh
Q psy8682 1855 LTALNQ 1860 (1956)
Q Consensus 1855 ekALeL 1860 (1956)
+...+.
T Consensus 212 ~~f~~~ 217 (312)
T 2wpv_A 212 DIFLER 217 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877644
No 274
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=55.04 E-value=0.00073 Score=83.52 Aligned_cols=231 Identities=16% Similarity=0.123 Sum_probs=123.5
Q ss_pred hHhHhhhhc--cCCCccHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy8682 1590 SMHEYTFAE--DNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667 (1956)
Q Consensus 1590 ydKAlqL~p--~NP~~daeall~LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALe 1667 (1956)
++++.++.. +.|. .|..+|.+++..+...+||+.|-++ +++..+.....+..+.|++++-+.++..+-+
T Consensus 41 ldRa~eyA~~~n~p~----VWs~LgkAqL~~~~v~eAIdsyIkA-----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk 111 (624)
T 3lvg_A 41 LDRAYEFAERCNEPA----VWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARK 111 (624)
T ss_dssp STTTTTSSSSCCCCC----CSSSHHHHTTTSSSCTTTTTSSCCC-----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTST
T ss_pred cHHHHHHHHHhCCcc----HHHHHHHHHHccCchHHHHHHHHhC-----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455555543 3344 8999999999999999999988654 3444555566667788999888888877665
Q ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCCCchhhhhhcCcchhhhhHHHHHHHHHHHHhcCCHHHHHH
Q psy8682 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747 (1956)
Q Consensus 1668 LdPdnaeAl~~LA~aY~~lGdydEALe~leKALelg~e~dPd~eay~~Ll~~~Kl~e~a~a~lnLA~ay~~lGdyeEAle 1747 (1956)
.- ..+.+=..|..+|.+.++..+-.+.+ . .|+ ... ....|+-++..|.|+.|.-
T Consensus 112 ~~-ke~~IDteLi~ayAk~~rL~elEefl----~-----~~N---~A~-------------iq~VGDrcf~e~lYeAAKi 165 (624)
T 3lvg_A 112 KA-RESYVETELIFALAKTNRLAELEEFI----N-----GPN---NAH-------------IQQVGDRCYDEKMYDAAKL 165 (624)
T ss_dssp TC-CSTTTTHHHHHHHHTSCSSSTTTSTT----S-----CCS---SSC-------------THHHHHHHHHSCCSTTSST
T ss_pred Hh-cccccHHHHHHHHHhhCcHHHHHHHH----c-----CCC---ccc-------------HHHHHHHHHHccCHHHHHH
Confidence 42 22233345666677666543321111 1 122 000 1234566666666666655
Q ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC
Q psy8682 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS 1827 (1956)
Q Consensus 1748 ~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekALel~PdnaeA~~nLG~ay~qlGryeEAie~yeKALeL~ 1827 (1956)
+|... .+ |..||.++..+|+|..|++.-++ .+++.+|-....+....+.+.-|..+--..+- .
T Consensus 166 lys~i-----sN------~akLAstLV~L~~yq~AVdaArK-----Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-h 228 (624)
T 3lvg_A 166 LYNNV-----SN------FGRLASTLVHLGEYQAAVDGARK-----ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-H 228 (624)
T ss_dssp TGGGS-----CC------CTTTSSSSSSCSGGGSSTTTTTT-----CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-C
T ss_pred HHHhC-----cc------HHHHHHHHHHHHHHHHHHHHHHh-----cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-c
Confidence 44332 11 34445555566666666555444 23444555555555555555544444333321 1
Q ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCChhchhccccch
Q psy8682 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEP 1875 (1956)
Q Consensus 1828 PdnaeA~~~LA~ay~klGdyEEAie~yekALeLdPdn~dA~~~LG~l~ 1875 (1956)
++. +-.+...|...|.+++-+..++.++.+...+......||.+|
T Consensus 229 ade---L~elv~~YE~~G~f~ELIsLlEaglglErAHmGmFTELaILY 273 (624)
T 3lvg_A 229 ADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILY 273 (624)
T ss_dssp SSC---CSGGGSSSSTTCCCTTSTTTHHHHTTSTTCCHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHhCCCHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 111 111223344445555555555555555444444444444444
No 275
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=40.44 E-value=5.6e+02 Score=30.80 Aligned_cols=80 Identities=11% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcHHHHHHHH-
Q psy8682 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-SRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG- 1838 (1956)
Q Consensus 1761 ~~a~a~~~LG~ly~~lGdyeEAie~fekALel~Pdn-aeA~~nLG~ay~qlGryeEAie~yeKALeL~PdnaeA~~~LA- 1838 (1956)
..+..+..+|..|.+.+++.+|..+|- + ..++ +..+..+-.-+...+ .|.....+...|
T Consensus 134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~---------------~~~e~dlfiaRaV 194 (336)
T 3lpz_A 134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQD---------------ESHTAPLYCARAV 194 (336)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTS---------------CGGGHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhc---------------CCccHHHHHHHHH
Confidence 458899999999999999999988873 1 1222 234333322222222 233334433333
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q psy8682 1839 ITCVHLGANTQAVEHFLTALN 1859 (1956)
Q Consensus 1839 ~ay~klGdyEEAie~yekALe 1859 (1956)
..|..+++...|...++...+
T Consensus 195 L~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 195 LPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHH
Confidence 357788999999887766554
No 276
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.76 E-value=1.5e+02 Score=40.30 Aligned_cols=88 Identities=8% Similarity=-0.029 Sum_probs=59.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---------------------C
Q psy8682 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI---------------------E 1669 (1956)
Q Consensus 1611 LG~aylk~GdydEAIe~fekALeldPdnaeAl~~LA~ay~~lGdyeEALe~yeKALeL---------------------d 1669 (1956)
+...+...|.++-|. +.+..-|.++..-|.+|.+|...|++++|..+|++|-.- .
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e 891 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYH 891 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTT
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCccc
Confidence 455566666665443 244555666666677777777777777777777765321 0
Q ss_pred CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Q psy8682 1670 PK--NLEALMAISICFTNEACLHDALDTLKDKIRP 1702 (1956)
Q Consensus 1670 Pd--naeAl~~LA~aY~~lGdydEALe~leKALel 1702 (1956)
+. ....|...+.++...+.++.+++..+.|++.
T Consensus 892 ~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~ 926 (950)
T 4gq2_M 892 HQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS 926 (950)
T ss_dssp TCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 11 1125667788888899999999999999976
No 277
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.01 E-value=2.4e+02 Score=38.36 Aligned_cols=52 Identities=19% Similarity=0.145 Sum_probs=33.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy8682 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL 1790 (1956)
Q Consensus 1732 LA~ay~~lGdyeEAle~LekALel~P~n~~~a~a~~~LG~ly~~lGdyeEAie~fekAL 1790 (1956)
+...+...|.++-|. +.+...|.+ +..-+.+|++|...|++++|..+|++|-
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t---~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSD---PIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSS---HHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCC---hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344555566665433 344556665 5566778888888888888888887754
No 278
>3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A*
Probab=23.72 E-value=7.8e+02 Score=28.36 Aligned_cols=58 Identities=3% Similarity=-0.051 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-cCChHHHHHHH
Q psy8682 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAE-NEQDPQAIAAL 1662 (1956)
Q Consensus 1605 aeall~LG~aylk~GdydEAIe~fekALeldPdn-aeAl~~LA~ay~~-lGdyeEALe~y 1662 (1956)
-+.+..+|...-+.++|++.+.+.+++...++.- .+-...+..+|-. .|....+...+
T Consensus 4 re~lv~~AklaeqaeRyddM~~~Mk~v~~~~~eLt~EERnLLSvAYKNvig~rR~swRii 63 (248)
T 3uzd_A 4 REQLVQKARLAEQAERYDDMAAAMKNVTELNEPLSNEERNLLSVAYKNVVGARRSSWRVI 63 (248)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHhhcccchHHHHHH
Confidence 3466778888888899999999999888876643 4445555555532 23334444444
Done!