RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8682
(1956 letters)
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex,
tetratricopeptide repeat, TPR, helical repeat, signaling
protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A
3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Length = 368
Score = 280 bits (719), Expect = 2e-84
Identities = 146/339 (43%), Positives = 202/339 (59%), Gaps = 19/339 (5%)
Query: 1553 WNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALG 1612
W++L + +EM + H W SD+ ++ Y F E+NP+++ F G
Sbjct: 17 WDKLQAELEEMAKRDAEA----HPWLSDYDDLTSATYDK-GYQFEEENPLRDHPQPFEEG 71
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+L++GDLP+A+L EAA +Q+P + E W LG + AENEQ+ AI+AL +CL ++P N
Sbjct: 72 LRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDN 131
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLT 1731
ALMA+++ FTNE+ A + L+D + P + L +
Sbjct: 132 QTALMALAVSFTNESLQRQACEILRDWL----RYTPAYAHLVTPAEEGAGGAGLGP-SKR 186
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
L S + +V L+L A R P SIDPDVQ GLGVLFNLS EYDKAVDCF +AL
Sbjct: 187 ILGSLLSDSLFLEVKELFLAAVRLDP-TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAV 1851
VRP+D LWN+LGA+LANGN+ EEAV AY AL+L PG++R+RYNLGI+C++LGA+ +AV
Sbjct: 246 VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 305
Query: 1852 EHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
EHFL ALN Q + G MS++IW +LR
Sbjct: 306 EHFLEALNMQRKSRGPRGEGGA-------MSENIWSTLR 337
Score = 73.5 bits (181), Expect = 1e-13
Identities = 41/96 (42%), Positives = 48/96 (50%), Gaps = 3/96 (3%)
Query: 674 ESNPR-PSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 732
P + L + L S + +V L+L A R P SIDP
Sbjct: 160 RYTPAYAHLVTPAEEGAGGAGLGP-SKRILGSLLSDSLFLEVKELFLAAVRLDP-TSIDP 217
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
DVQ GLGVLFNLS EYDKAVDCF +AL VRP+ L
Sbjct: 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLL 253
Score = 58.1 bits (141), Expect = 1e-08
Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 19/85 (22%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLEPR 378
G++R+RYNLGI+C++LGA+ +AVEHFL ALN Q + G
Sbjct: 283 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA--------------- 327
Query: 379 AVKEMSDSIWYSLRVVLSVLNRSDL 403
MS++IW +LR+ LS+L +SD
Sbjct: 328 ----MSENIWSTLRLALSMLGQSDA 348
Score = 57.0 bits (138), Expect = 3e-08
Identities = 27/241 (11%), Positives = 64/241 (26%), Gaps = 62/241 (25%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVW---------------LSLGISLAENEQDPQAIAAL 1662
+ A L + P A + + SL + +
Sbjct: 145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELF 204
Query: 1663 SKCLSIEPKNL--EALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
+ ++P ++ + + + F A+D + P +
Sbjct: 205 LAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL----SVRPNDYLLWNKLGAT 260
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFN 1774
L + + ++ ++ Y A + P + LG+
Sbjct: 261 L-ANGNQS-----------------EEAVAAYRRAL------ELQPGYIRSRYNLGISCI 296
Query: 1775 LSDEYDKAVDCFRSALQVRPDD-----------SRLWNRLGASLANGNRPEEAVEAYHTA 1823
+ +AV+ F AL ++ +W+ L +L+ + + A
Sbjct: 297 NLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356
Query: 1824 L 1824
L
Sbjct: 357 L 357
Score = 40.0 bits (94), Expect = 0.006
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQL 1141
+ EAA +Q+P + E W LG + AENEQ
Sbjct: 84 VLLFEAAVQQDPKHMEAWQYLGTTQAENEQE 114
Score = 36.6 bits (85), Expect = 0.073
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 11/68 (16%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAE-----------VWLSLGISLAENEQDPQAIAALSKCL 1666
G A+ + A + + +W +L ++L+ Q AA ++ L
Sbjct: 298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357
Query: 1667 SIEPKNLE 1674
S
Sbjct: 358 STLLTMFG 365
Score = 35.8 bits (83), Expect = 0.15
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELL 769
+ PD L V F +A + R L+ P + L+
Sbjct: 126 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169
Score = 35.4 bits (82), Expect = 0.16
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ P + LG+ + +AV+ F AL ++
Sbjct: 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 320
Score = 34.2 bits (79), Expect = 0.45
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ L+ A +Q P + LG +++ A+ R L+++PD
Sbjct: 81 PNAVLLFEAAVQQDPK---HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT 133
Score = 32.3 bits (74), Expect = 1.6
Identities = 14/70 (20%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 712 QQVLSLYLNAARQCPSQSI---------DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
LS Y + + D G+ + AV F +A+Q
Sbjct: 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD 94
Query: 763 PDFTELLVYL 772
P E YL
Sbjct: 95 PKHMEAWQYL 104
Score = 31.5 bits (72), Expect = 2.8
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 16/71 (22%)
Query: 1077 AIELIPQSRLRFVYCG---TFQNMCPMLEGDL---VQSFLLRHLEAAAKQEPDNAEVWLS 1130
A+ L P S V CG F G+ V F AA P++ +W
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLS-----GEYDKAVDCF-----TAALSVRPNDYLLWNK 256
Query: 1131 LGISLAENEQL 1141
LG +LA Q
Sbjct: 257 LGATLANGNQS 267
Score = 31.2 bits (71), Expect = 4.0
Identities = 9/53 (16%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 719 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
+ A + + + LG L + S + + + F +A+++ P + V
Sbjct: 169 VTPAEEGAGGAGLGPSKRILGSLLSDS-LFLEVKELFLAAVRLDPTSIDPDVQ 220
Score = 30.8 bits (70), Expect = 5.1
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 12/49 (24%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRM 1159
+ L + +PDN ++L +S N +QA +
Sbjct: 118 ISALRRCLELKPDNQTALMALAVSF------------TNESLQRQACEI 154
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat,
TPR; 3.00A {Mus musculus}
Length = 365
Score = 275 bits (706), Expect = 9e-83
Identities = 139/344 (40%), Positives = 201/344 (58%), Gaps = 26/344 (7%)
Query: 1549 EPALWNELNSHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNA 1608
+ W+++ + W+EM E + S S Y F +NP ++ A
Sbjct: 15 DTEFWDKMQAEWEEMARRNWISE------NQEAQNQVTVSASEKGYYFHTENPFKDWPGA 68
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F G ++L++GDLP IL++EAA Q+P +AE W LGI+ AENE + AI AL +CL +
Sbjct: 69 FEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLEL 128
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYK-ADALPSKLTRLA 1726
+P NL+ALMA+++ +TN + DA + LK+ I + NP+ K P R++
Sbjct: 129 QPNNLKALMALAVSYTNTSHQQDACEALKNWI----KQNPKYKYLVKNKKGSPGLTRRMS 184
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F
Sbjct: 185 K-------SPVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDAF 236
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+AL VRP+D LWNRLGA+LANG+R EEAVEAY AL++ PGF+R+RYNLGI+C++LGA
Sbjct: 237 NAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGA 296
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
+AV +FLTAL+ Q + + +S +IW +LR
Sbjct: 297 YREAVSNFLTALSLQRKSRNQQQVPH------PAISGNIWAALR 334
Score = 71.6 bits (176), Expect = 5e-13
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
+ + V LYL AA Q IDPD+Q GLGVLF+LS E+++A+D F +AL VRP+
Sbjct: 187 PVDSSVLEGVKELYLEAAHQNGDM-IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE 245
Query: 765 FTEL 768
L
Sbjct: 246 DYSL 249
Score = 56.6 bits (137), Expect = 3e-08
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 24/88 (27%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ---AAAHDGLTPHGLEPRADGLTPHGL 375
GF+R+RYNLGI+C++LGA +AV +FLTAL+ Q P
Sbjct: 279 GFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHP--------------- 323
Query: 376 EPRAVKEMSDSIWYSLRVVLSVLNRSDL 403
+S +IW +LR+ LS++++ +L
Sbjct: 324 ------AISGNIWAALRIALSLMDQPEL 345
Score = 48.9 bits (117), Expect = 1e-05
Identities = 33/248 (13%), Positives = 65/248 (26%), Gaps = 65/248 (26%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA----------IAALSKCLS 1667
A L+ KQ P + + S + ++ +
Sbjct: 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAH 205
Query: 1668 IEPKNL--EALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKL 1722
+ + + + F + A+D + P S + L +
Sbjct: 206 QNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAAL----TVRPEDYSLWNRLGATL-ANG 260
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEY 1779
R ++ + Y A I P + LG+ Y
Sbjct: 261 DRS-----------------EEAVEAYTRAL------EIQPGFIRSRYNLGISCINLGAY 297
Query: 1780 DKAVDCFRSALQVRPDD------------SRLWNRLGASLANGNRPEEA-------VEAY 1820
+AV F +AL ++ +W L +L+ ++PE ++
Sbjct: 298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVL 357
Query: 1821 HTALQLSP 1828
A L P
Sbjct: 358 LRAFNLDP 365
Score = 47.7 bits (114), Expect = 2e-05
Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 8/94 (8%)
Query: 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLGA--------SLANGNRPEEAVEAYHTALQLS 1827
+ E+++A S + W + N + + Y+ +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP 61
Query: 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ G+ + G + A+ Q
Sbjct: 62 FKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQD 95
Score = 40.0 bits (94), Expect = 0.006
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQL 1141
+ +EAA Q+P +AE W LGI+ AENE
Sbjct: 85 ILFMEAAILQDPGDAEAWQFLGITQAENENE 115
Score = 36.6 bits (85), Expect = 0.077
Identities = 20/132 (15%), Positives = 39/132 (29%), Gaps = 18/132 (13%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQK- 784
+ P+ L V + + A + ++ ++ P + L+ S K
Sbjct: 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186
Query: 785 ISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWE------ESQKQVDRARSIYER 838
D L + +A N + I + +RA +
Sbjct: 187 PVDSSVLEGVKELYLEAAHQN--------GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNA 238
Query: 839 ALDVDHRNITLW 850
AL V + +LW
Sbjct: 239 ALTVRPEDYSLW 250
Score = 34.6 bits (80), Expect = 0.26
Identities = 15/117 (12%), Positives = 39/117 (33%), Gaps = 17/117 (14%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D + LG+ ++ A+ + L+++P+ + L+ L S S +
Sbjct: 98 DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY------TNTSHQQD 151
Query: 791 -LRDYQHRKRKAFEDN-----IRKNR-MVISNWIKYAQWEESQKQVDRARSIYERAL 840
+ + N + KN+ + ++ ++ + +Y A
Sbjct: 152 ACEAL----KNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAA 204
Score = 33.5 bits (77), Expect = 0.61
Identities = 23/119 (19%), Positives = 35/119 (29%), Gaps = 33/119 (27%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
I P + LG+ Y +AV F +AL ++
Sbjct: 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS-------------------- 314
Query: 786 SDPDELRDYQHRKRKAFEDNIRKN-RMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
R+ Q A NI R+ +S Q E Q + RA ++D
Sbjct: 315 ------RNQQQVPHPAISGNIWAALRIALSL---MDQPELFQAANLGDLDVLLRAFNLD 364
Score = 31.6 bits (72), Expect = 2.7
Identities = 13/141 (9%), Positives = 35/141 (24%), Gaps = 5/141 (3%)
Query: 745 SDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED 804
+ E+++A S + + ++ Q+ + + K +
Sbjct: 2 AMEFERAKAAVESDTEFWDKMQAEW-EEMARRNWISENQEAQNQVTVSAS----EKGYYF 56
Query: 805 NIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVN 864
+ + + + E A+ D + W + N
Sbjct: 57 HTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQ 116
Query: 865 HARNLWDRAVTILPRANQFWY 885
A R + + P +
Sbjct: 117 AAIVALQRCLELQPNNLKALM 137
Score = 31.6 bits (72), Expect = 2.7
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 12/49 (24%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRM 1159
+ L+ + +P+N + ++L +S N + Q A
Sbjct: 119 IVALQRCLELQPNNLKALMALAVSY------------TNTSHQQDACEA 155
Score = 31.6 bits (72), Expect = 3.0
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 1/62 (1%)
Query: 712 QQVLSLYLNAARQCPS-QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q +S D G+ + + +A+ P E
Sbjct: 44 QVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQ 103
Query: 771 YL 772
+L
Sbjct: 104 FL 105
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein,
peroxin 5, PEX5, PTS1 binding domain, protein-peptide
complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A
3cvn_A 3cvp_A 3cvq_A
Length = 327
Score = 269 bits (690), Expect = 4e-81
Identities = 96/298 (32%), Positives = 158/298 (53%), Gaps = 13/298 (4%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA + P+ E W SLG++ AEN
Sbjct: 9 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAEN 68
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
E+D AI AL+ ++PK++ A+++ TNE + AL +L+ + S P+
Sbjct: 69 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL----LSQPQYEQ 124
Query: 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL 1772
+ L + + + + ++ +++ +L A P+ D + LGVL
Sbjct: 125 LGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN---DAQLHASLGVL 181
Query: 1773 FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR 1832
+NLS+ YD A R A+++RPDD++LWN+LGA+LANGNRP+EA++AY+ AL ++PG+VR
Sbjct: 182 YNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVR 241
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
YN+ ++ ++ A + + A+ Q G TP G A +E + S+W R
Sbjct: 242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQV---GGTTPTG---EASREATRSMWDFFR 293
Score = 68.5 bits (168), Expect = 5e-12
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 3/64 (4%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
++ +++ +L A P+ D + LGVL+NLS+ YD A R A+++RPD
Sbjct: 148 FAAPNEYRECRTLLHAALEMNPN---DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD 204
Query: 765 FTEL 768
+L
Sbjct: 205 DAQL 208
Score = 63.8 bits (156), Expect = 2e-10
Identities = 33/256 (12%), Positives = 71/256 (27%), Gaps = 62/256 (24%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW---------------LSLGISLAENE 1653
AL + + +A+ L A +P ++ S A
Sbjct: 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPN 152
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSA 1712
+ + L L + P + + ++ + + A L+ + E P
Sbjct: 153 EYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAV----ELRPDDAQL 208
Query: 1713 Y--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQN 1767
+ L + R + + + + L I+P V
Sbjct: 209 WNKLGATL-ANGNRPQ----------EALDAYNRALD-------------INPGYVRVMY 244
Query: 1768 GLGVLFNLSDEYDKAVDCFRSALQVRPDD------------SRLWNRLGASLANGNRPEE 1815
+ V ++ +YD A A+ ++ +W+ L NRP+
Sbjct: 245 NMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDL 304
Query: 1816 AVEAYHTALQ-LSPGF 1830
Y ++ + F
Sbjct: 305 VELTYAQNVEPFAKEF 320
Score = 60.8 bits (148), Expect = 1e-09
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHDGLTPHGLEPRADGLTPHGLEPR 378
G+VR YN+ ++ ++ A + + A+ Q G P +
Sbjct: 238 GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ--------VGGTTPTGEAS-------- 281
Query: 379 AVKEMSDSIWYSLRVVLSVLNRSDL 403
+E + S+W R++L+V+NR DL
Sbjct: 282 --REATRSMWDFFRMLLNVMNRPDL 304
Score = 56.5 bits (137), Expect = 3e-08
Identities = 13/81 (16%), Positives = 22/81 (27%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
+ + G S+ EA A+ Q +P A +L
Sbjct: 2 HMLQNNTDYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Query: 1838 GITCVHLGANTQAVEHFLTAL 1858
G+T + A+ A
Sbjct: 62 GLTQAENEKDGLAIIALNHAR 82
Score = 39.6 bits (93), Expect = 0.009
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQL 1141
EA + P+ E W SLG++ AENE+
Sbjct: 41 ALAFEAVCQAAPEREEAWRSLGLTQAENEKD 71
Score = 35.7 bits (83), Expect = 0.12
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
+DP V L V + A+ R+ L +P + +L
Sbjct: 83 MLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125
Score = 34.2 bits (79), Expect = 0.38
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
I+P V + V ++ +YD A A+ ++ T
Sbjct: 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTT 275
Score = 34.2 bits (79), Expect = 0.39
Identities = 7/45 (15%), Positives = 13/45 (28%)
Query: 728 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
+ + G+ +A F + Q P+ E L
Sbjct: 17 PYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSL 61
Score = 33.0 bits (76), Expect = 0.85
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 727 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
ID F +EY + +AL++ P+ +L L
Sbjct: 133 DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASL 178
Score = 32.3 bits (74), Expect = 1.5
Identities = 6/42 (14%), Positives = 13/42 (30%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
P+ LG+ +++ A+ A + P
Sbjct: 49 QAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA 90
Score = 30.3 bits (69), Expect = 6.3
Identities = 7/27 (25%), Positives = 14/27 (51%)
Query: 1115 EAAAKQEPDNAEVWLSLGISLAENEQL 1141
AA + P++A++ SLG+ +
Sbjct: 162 HAALEMNPNDAQLHASLGVLYNLSNNY 188
Score = 30.0 bits (68), Expect = 7.9
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRM 1159
+ L A +P + V +L +S N N A
Sbjct: 75 IIALNHARMLDPKDIAVHAALAVSH------------TNEHNANAALAS 111
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical,
transport protein; 1.60A {Trypanosoma brucei} SCOP:
a.118.8.1
Length = 121
Score = 122 bits (308), Expect = 1e-32
Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 1593 EYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
+Y F +NP N G L+ +L A L EA ++EP+ E W SLG++ AEN
Sbjct: 5 DYPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAEN 64
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR 1709
E+D AI AL+ ++PK++ A+++ TNE + AL +L+ + S P+
Sbjct: 65 EKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWL----LSQPQ 117
Score = 79.0 bits (195), Expect = 2e-17
Identities = 18/93 (19%), Positives = 31/93 (33%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
G+ +A F + Q P+ W LG + A + A+ A + A L P
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ L ++ + A+ L Q
Sbjct: 83 KDIAVHAALAVSHTNEHNANAALASLRAWLLSQ 115
Score = 60.5 bits (147), Expect = 6e-11
Identities = 15/83 (18%), Positives = 28/83 (33%), Gaps = 2/83 (2%)
Query: 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
L A Q + + LG+ +++ A+ A + P D + L S
Sbjct: 38 LAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSH 95
Query: 1808 ANGNRPEEAVEAYHTALQLSPGF 1830
N + A+ + L P +
Sbjct: 96 TNEHNANAALASLRAWLLSQPQY 118
Score = 52.5 bits (126), Expect = 4e-08
Identities = 13/59 (22%), Positives = 19/59 (32%)
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
G S+ EA A+ Q P A +LG+T + A+ A
Sbjct: 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78
Score = 39.7 bits (93), Expect = 0.001
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 1102 EGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQL 1141
+L ++ EA ++EP+ E W SLG++ AENE+
Sbjct: 30 LANLAEA--ALAFEAVCQKEPEREEAWRSLGLTQAENEKD 67
Score = 35.1 bits (81), Expect = 0.055
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
D V L V + A+ R+ L +P + +L
Sbjct: 84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121
Score = 33.2 bits (76), Expect = 0.23
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 717 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
L A Q + + LG+ +++ A+ A + P + L
Sbjct: 38 LAFEAVCQKEPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL 91
Score = 31.3 bits (71), Expect = 0.90
Identities = 9/49 (18%), Positives = 14/49 (28%), Gaps = 12/49 (24%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRM 1159
+ L A +P + V +L +S N N A
Sbjct: 71 IIALNHARMLDPKDIAVHAALAVSHT------------NEHNANAALAS 107
Score = 29.0 bits (65), Expect = 6.3
Identities = 7/35 (20%), Positives = 11/35 (31%)
Query: 738 LGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
G+ +A F + Q P+ E L
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSL 57
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110;
OGT, glcnac, nucleoporin, O-linked glycosylation, TPR
repeat, protein binding; 2.85A {Homo sapiens} SCOP:
a.118.8.1
Length = 388
Score = 127 bits (322), Expect = 2e-31
Identities = 50/251 (19%), Positives = 91/251 (36%), Gaps = 28/251 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + + GD +A + +QEPDN V L L + + ++ + + P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
EA + + L +A++ + + P Y A AL +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHAL----RLKPDFIDGYINLAAAL-VAAGDM-- 117
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ + Y++A + P V++ LG L ++A C+
Sbjct: 118 ---------------EGAVQAYVSALQYNPD---LYCVRSDLGNLLKALGRLEEAKACYL 159
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
A++ +P+ + W+ LG A+ + A+ L P F+ A NLG
Sbjct: 160 KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIF 219
Query: 1848 TQAVEHFLTAL 1858
+AV +L AL
Sbjct: 220 DRAVAAYLRAL 230
Score = 126 bits (319), Expect = 5e-31
Identities = 53/251 (21%), Positives = 87/251 (34%), Gaps = 28/251 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + L + + A KQ P AE + +LG E Q +AI L ++P
Sbjct: 39 LSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
++ + ++ + A+ + + NP + L L RL
Sbjct: 99 DFIDGYINLAAALVAAGDMEGAVQAYVSAL----QYNPDLYCVRSDLGNLL-KALGRL-- 151
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
++ + YL A P+ + LG +FN E A+ F
Sbjct: 152 ---------------EEAKACYLKAIETQPN---FAVAWSNLGCVFNAQGEIWLAIHHFE 193
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
A+ + P+ + LG L + AV AY AL LSP NL G
Sbjct: 194 KAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLI 253
Query: 1848 TQAVEHFLTAL 1858
A++ + A+
Sbjct: 254 DLAIDTYRRAI 264
Score = 118 bits (299), Expect = 2e-28
Identities = 45/252 (17%), Positives = 83/252 (32%), Gaps = 30/252 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG +G L AI + A + +PD + +++L +L A+ A L P
Sbjct: 73 LGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP 132
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAY--KADALPSKLTRLA 1726
+ L +A + +P A+ + +
Sbjct: 133 DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF-----AVAWSNLGCVF-NAQGEI- 185
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ + A P+ D LG + + +D+AV +
Sbjct: 186 ----------------WLAIHHFEKAVTLDPN---FLDAYINLGNVLKEARIFDRAVAAY 226
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
AL + P+ + + L + A++ Y A++L P F A NL G+
Sbjct: 227 LRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGS 286
Query: 1847 NTQAVEHFLTAL 1858
+A + + TAL
Sbjct: 287 VAEAEDCYNTAL 298
Score = 118 bits (298), Expect = 3e-28
Identities = 52/254 (20%), Positives = 91/254 (35%), Gaps = 34/254 (13%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + GD+ A+ +A + PD V LG L + +A A K + +P
Sbjct: 107 LAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP 166
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
A + F + + A+ + + +P AY + L +
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAV----TLDPNFLDAYINLGNVL-KEARIF-- 219
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVD 1784
+ ++ YL A S+ P+ V L ++ D A+D
Sbjct: 220 ---------------DRAVAAYLRAL------SLSPNHAVVHGNLACVYYEQGLIDLAID 258
Query: 1785 CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHL 1844
+R A++++P + L +L EA + Y+TAL+L P + NL
Sbjct: 259 TYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQ 318
Query: 1845 GANTQAVEHFLTAL 1858
G +AV + AL
Sbjct: 319 GNIEEAVRLYRKAL 332
Score = 118 bits (297), Expect = 4e-28
Identities = 48/255 (18%), Positives = 79/255 (30%), Gaps = 36/255 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG G L A A + +P+ A W +LG + AI K ++++P
Sbjct: 141 LGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP 200
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAY--KADALPSKLTRLA 1726
L+A + + A+ + P + A + +
Sbjct: 201 NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH-----AVVHGNLACVY-YEQGLI- 253
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAV 1783
+ Y A + P L +A
Sbjct: 254 ----------------DLAIDTYRRAI------ELQPHFPDAYCNLANALKEKGSVAEAE 291
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
DC+ +AL++ P + N L EEAV Y AL++ P F A NL
Sbjct: 292 DCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ 351
Query: 1844 LGANTQAVEHFLTAL 1858
G +A+ H+ A+
Sbjct: 352 QGKLQEALMHYKEAI 366
Score = 113 bits (286), Expect = 9e-27
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 28/238 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG QG++ AI + E A +P+ + +++LG L E +A+AA + LS+ P
Sbjct: 175 LGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSP 234
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
+ ++ + + + A+DT + I E P P AY A+AL + +
Sbjct: 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAI----ELQPHFPDAYCNLANAL-KEKGSV-- 287
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ Y A R CP+ D N L + ++AV +R
Sbjct: 288 ---------------AEAEDCYNTALRLCPT---HADSLNNLANIKREQGNIEEAVRLYR 329
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
AL+V P+ + + L + L + +EA+ Y A+++SP F A N+G T +
Sbjct: 330 KALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
Score = 79.1 bits (196), Expect = 3e-15
Identities = 18/93 (19%), Positives = 36/93 (38%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
L + +++ A + PD++ + L + R + + A++ +P
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP 64
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
A NLG G +A+EH+ AL +
Sbjct: 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97
Score = 67.2 bits (165), Expect = 2e-11
Identities = 24/205 (11%), Positives = 63/205 (30%), Gaps = 63/205 (30%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L QG + AI A + +P + + +L +L E +A + L + P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
+ ++L ++ + + +A+ Y
Sbjct: 303 THADSLNNLANIKREQGNIEEAV-----------------RLY----------------- 328
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFR 1787
++ L + P+ + L + + +A+ ++
Sbjct: 329 ------------RKALEV-------------FPEFAAAHSNLASVLQQQGKLQEALMHYK 363
Query: 1788 SALQVRPDDSRLWNRLGASLAN-GN 1811
A+++ P + ++ +G +L +
Sbjct: 364 EAIRISPTFADAYSNMGNTLKEMQD 388
Score = 51.4 bits (124), Expect = 2e-06
Identities = 7/62 (11%), Positives = 11/62 (17%)
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
L E A + P L ++ A+
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 1860 QQ 1861
Q
Sbjct: 62 QN 63
Score = 42.5 bits (101), Expect = 0.001
Identities = 22/141 (15%), Positives = 56/141 (39%), Gaps = 18/141 (12%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ A +Q P + + LG ++ + +A++ +R AL+++PDF + +
Sbjct: 49 LDRSAHFSTLAIKQNPL---LAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYI 105
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQV 829
L ++L D + ++ Y A ++ N + ++ ++
Sbjct: 106 NLAAAL------VAAGDMEGAVQAY----VSA----LQYNPDLYCVRSDLGNLLKALGRL 151
Query: 830 DRARSIYERALDVDHRNITLW 850
+ A++ Y +A++ W
Sbjct: 152 EEAKACYLKAIETQPNFAVAW 172
Score = 38.3 bits (90), Expect = 0.025
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ P N L + ++AV +R AL+V P+F
Sbjct: 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340
Score = 37.9 bits (89), Expect = 0.026
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ P L +A DC+ +AL++ P +
Sbjct: 265 ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD 306
Score = 37.9 bits (89), Expect = 0.027
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 3/62 (4%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ + RQ P + V L + D++ A++ P E
Sbjct: 15 FEAAERHCMQLWRQEPD---NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYS 71
Query: 771 YL 772
L
Sbjct: 72 NL 73
Score = 37.9 bits (89), Expect = 0.031
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
S+ P+ V L ++ D A+D +R A++++P F +
Sbjct: 231 SLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD 272
Score = 37.5 bits (88), Expect = 0.041
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
P+ + LG +FN E A+ F A+ + P+F +
Sbjct: 163 ETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLD 204
Score = 37.1 bits (87), Expect = 0.046
Identities = 6/42 (14%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ P+ + L + + +A+ ++ A+++ P F +
Sbjct: 333 EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374
Score = 35.6 bits (83), Expect = 0.17
Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++DP+ LG + + +D+AV + AL + P+
Sbjct: 197 TLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV 238
Score = 31.4 bits (72), Expect = 2.9
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 15/114 (13%)
Query: 738 LGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQH 796
L + +++ A + PD T +L+ L S + D
Sbjct: 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIH------FQCRRLDRSAHFST- 57
Query: 797 RKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLW 850
A I++N ++ + + + Q+ A Y AL + I +
Sbjct: 58 ---LA----IKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGY 104
Score = 29.8 bits (68), Expect = 9.5
Identities = 11/31 (35%), Positives = 13/31 (41%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQL 1141
A KQ P AE + +LG E QL
Sbjct: 53 AHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic
reticulum, TPR repeat, UNF protein response; 2.51A {Mus
musculus}
Length = 359
Score = 118 bits (299), Expect = 1e-28
Identities = 38/247 (15%), Positives = 80/247 (32%), Gaps = 9/247 (3%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
LG++ L G L A+ AA +PDN + + A+ L+K +++
Sbjct: 7 LELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL 66
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLAN 1727
+ A + + L +A D K + +SNP +A++ K +
Sbjct: 67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL----KSNPSEQEEKEAESQLVKADEMQR 122
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ ++ C D +++ F E KA+ +
Sbjct: 123 LRSQALD-AFDGADYTAAITFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDLK 178
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+A +++ D++ + ++ E ++ L+L R +
Sbjct: 179 AASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238
Query: 1848 TQAVEHF 1854
A E
Sbjct: 239 ESAEELI 245
Score = 113 bits (285), Expect = 7e-27
Identities = 36/251 (14%), Positives = 79/251 (31%), Gaps = 22/251 (8%)
Query: 1603 QNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAAL 1662
+ + D +AI +L+ + +AE+ + + +AI+ L
Sbjct: 118 DEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL 177
Query: 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSK 1721
++ N EA IS + +L +++ ++ + + K
Sbjct: 178 KAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKK 233
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ-------NGLGVLFN 1774
L +L L + S Y + + +P V + F+
Sbjct: 234 LNKLIESAEE----LIRDGRYTDATSKYESVMK------TEPSVAEYTVRSKERICHCFS 283
Query: 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
++ +A+ LQ+ PD+ + +EA++ Y A + + + R
Sbjct: 284 KDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIR 343
Query: 1835 YNLGITCVHLG 1845
L L
Sbjct: 344 EGLEKAQRLLK 354
Score = 93.1 bits (232), Expect = 5e-20
Identities = 39/231 (16%), Positives = 68/231 (29%), Gaps = 27/231 (11%)
Query: 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
+ E L LG L Q A++ + +P N A + F AL L
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLT 61
Query: 1698 DKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSL------ 1748
I +A + L K +L + + ++VL
Sbjct: 62 KVI----ALKMDFTAARLQRGHLL-LKQGKLDE----------AEDDFKKVLKSNPSEQE 106
Query: 1749 -YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
++ + + L F+ +D Y A+ L+V D+ L
Sbjct: 107 EKEAESQLVKADEMQRLRSQAL-DAFDGAD-YTAAITFLDKILEVCVWDAELRELRAECF 164
Query: 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P +A+ A +L A Y + LG + ++ L
Sbjct: 165 IKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL 215
Score = 50.0 bits (120), Expect = 5e-06
Identities = 12/86 (13%), Positives = 21/86 (24%), Gaps = 4/86 (4%)
Query: 1594 YTFA-EDNPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL 1649
Y + P E + + + AI + EPDN +
Sbjct: 257 YESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316
Query: 1650 AENEQDPQAIAALSKCLSIEPKNLEA 1675
E +AI + +
Sbjct: 317 LIEEMYDEAIQDYEAAQEHNENDQQI 342
Score = 49.6 bits (119), Expect = 6e-06
Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSL----GISLAENEQDPQ 1657
++ +E +R G A E+ K EP AE + +++E+ +
Sbjct: 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVE 290
Query: 1658 AIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
AI S+ L +EP N+ AL + + E +A+ +
Sbjct: 291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 330
Score = 45.0 bits (107), Expect = 2e-04
Identities = 16/159 (10%), Positives = 42/159 (26%), Gaps = 18/159 (11%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ +S A++ + + + L+ +++ ++ R L++ D
Sbjct: 170 PRKAISDLKAASKLKSD---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 226
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED-----NIRKNRMVISNWIKY--AQWE 823
+ + + Y A + + K
Sbjct: 227 HYKQVKKLNKLIESAEELIRDGRYT----DATSKYESVMKTEPSVAEYTVRSKERICHCF 282
Query: 824 ESQKQVDRARSIYERALDVDHRNITLWLK----YTELEM 858
++ A I L ++ N+ Y EM
Sbjct: 283 SKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEM 321
Score = 44.6 bits (106), Expect = 2e-04
Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 24/189 (12%)
Query: 674 ESNPR-PSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 732
+SNP +A++ K + + ++ C D
Sbjct: 99 KSNPSEQEEKEAESQLVKADEMQRLRSQALD-AFDGADYTAAITFLDKILEVCVW---DA 154
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE-L 791
+++ F E KA+ ++A +++ D TE + + ++ D + L
Sbjct: 155 ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLY------YQLGDHELSL 208
Query: 792 RDYQHRKRKAFE---DN-----IRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
+ R+ + D+ K ++ I+ A+ + A S YE + +
Sbjct: 209 SEV----RECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264
Query: 844 HRNITLWLK 852
++
Sbjct: 265 PSVAEYTVR 273
Score = 39.6 bits (93), Expect = 0.009
Identities = 23/180 (12%), Positives = 48/180 (26%), Gaps = 25/180 (13%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
LS + A P + +F + A+ + ++ DFT +
Sbjct: 19 LADALSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARL 75
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFE-----DNIRKNRMVISN------WIK 818
L K DE D++ K + ++ +
Sbjct: 76 QRGHLL------LKQGKLDEAEDDFK----KVLKSNPSEQEEKEAESQLVKADEMQRLRS 125
Query: 819 YAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
A A + ++ L+V + L E ++ + A + A +
Sbjct: 126 QALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKS 185
Score = 37.6 bits (88), Expect = 0.039
Identities = 23/159 (14%), Positives = 47/159 (29%), Gaps = 23/159 (14%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D + LG + + A+ F +A+ PD + +
Sbjct: 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVF------LAMGKSKA 55
Query: 791 -LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL 849
L D K I + ++ Q ++D A +++ L +
Sbjct: 56 ALPDLT----KV----IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEE 107
Query: 850 W------LKYTELEMRNRQVNHARNL--WDRAVTILPRA 880
+K E++ Q A + + A+T L +
Sbjct: 108 KEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146
Score = 34.6 bits (80), Expect = 0.34
Identities = 6/42 (14%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++PD + + + YD+A+ + +A + + +
Sbjct: 300 QMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ 341
Score = 30.7 bits (70), Expect = 5.4
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTAL 348
F AR G + G +A + F L
Sbjct: 69 DFTAARLQRGHLLLKQGKLDEAEDDFKKVL 98
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting
complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin,
ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Length = 330
Score = 116 bits (293), Expect = 4e-28
Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 40/264 (15%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+L + D +++P +A +L E + + K + +
Sbjct: 26 VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85
Query: 1669 EPKNLEALMAISICFTNEACLHD-ALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLA 1726
P N + A+ + ++ A L A+
Sbjct: 86 YPSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT----TLEKTYGPAW---------IAYG 132
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAV 1783
+ + H Q ++ Y AA+ + +G+ + L++ A
Sbjct: 133 HS-------FAVESEHDQAMAAYFTAAQ------LMKGCHLPMLYIGLEYGLTNNSKLAE 179
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG---------FVRAR 1834
F AL + P+D + + +G + A + + AL+ +
Sbjct: 180 RFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLL 239
Query: 1835 YNLGITCVHLGANTQAVEHFLTAL 1858
NLG C L +A+++ AL
Sbjct: 240 NNLGHVCRKLKKYAEALDYHRQAL 263
Score = 111 bits (280), Expect = 2e-26
Identities = 37/246 (15%), Positives = 75/246 (30%), Gaps = 34/246 (13%)
Query: 1620 DLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI 1679
+ PS + E+ +N +V +SL N S + +P + L
Sbjct: 4 NKPSETVIPESVDGL-QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 1680 SICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLTFRSPLSS 1738
++ + + P P ++ A + +
Sbjct: 63 IGTLVELNKANELFYLSHKLV----DLYPSNPVSWFA---------VGC---YYLM---- 102
Query: 1739 REIHQQVLSLYLNAARQCPSQSI--DPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
+ AR+ S++ + G F + E+D+A+ + +A Q+
Sbjct: 103 -------VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM 155
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
+G N + A + AL ++P + +G+ G A +
Sbjct: 156 KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKW 215
Query: 1854 FLTALN 1859
FL AL
Sbjct: 216 FLDALE 221
Score = 109 bits (274), Expect = 1e-25
Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 30/251 (11%)
Query: 1609 FALGQEKLRQGDLP-SAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
FA+G L G A YL A E W++ G S A + QA+AA
Sbjct: 94 FAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRL 1725
+ ++ I + + A I P +P
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP---EDPFVMHEVGVVA------- 203
Query: 1726 ANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP------DVQNGLGVLFNLSDEY 1779
+ +L+A + + + + N LG + +Y
Sbjct: 204 -----------FQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
+A+D R AL + P ++ ++ +G + E AV+ +HTAL L + LG
Sbjct: 253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGH 312
Query: 1840 TCVHLGANTQA 1850
+++A
Sbjct: 313 CIEMYIGDSEA 323
Score = 105 bits (264), Expect = 2e-24
Identities = 51/254 (20%), Positives = 78/254 (30%), Gaps = 36/254 (14%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-NEQDPQAIAALSKCLSIEPKNLEAL 1676
P N W ++G ++ A LSK ++E A
Sbjct: 69 LNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAW 128
Query: 1677 MAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS 1734
+A F E+ A+ ++ G P Y N L
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKG---CHLPMLYIGLEY----GLTNNSKL---- 177
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
+ Q LS+ P DP V + +GV+ + E+ A F AL+
Sbjct: 178 ---AERFFSQALSI-------APE---DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIK 224
Query: 1795 DDSR---------LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
L N LG + EA++ + AL L P +G +G
Sbjct: 225 AIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMG 284
Query: 1846 ANTQAVEHFLTALN 1859
AV++F TAL
Sbjct: 285 NFENAVDYFHTALG 298
Score = 92.4 bits (230), Expect = 5e-20
Identities = 37/214 (17%), Positives = 69/214 (32%), Gaps = 13/214 (6%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
A G + + A+ AA+ L +G+ A S+ LSI
Sbjct: 129 IAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
P++ + + + A D + + + K + L L L +
Sbjct: 189 APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL---LNNLGH- 244
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ + + L + A P + + +G + +L ++ AVD F +
Sbjct: 245 ------VCRKLKKYAEALDYHRQALVLIPQ---NASTYSAIGYIHSLMGNFENAVDYFHT 295
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822
AL +R DD+ LG + EA
Sbjct: 296 ALGLRRDDTFSVTMLGHCIEMYIGDSEAYIGADI 329
Score = 50.0 bits (120), Expect = 4e-06
Identities = 7/84 (8%), Positives = 21/84 (25%), Gaps = 1/84 (1%)
Query: 1779 YDKAVD-CFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
Y+K + ++ ++ + L + + ++ P
Sbjct: 3 YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62
Query: 1838 GITCVHLGANTQAVEHFLTALNQQ 1861
T V L + ++
Sbjct: 63 IGTLVELNKANELFYLSHKLVDLY 86
Score = 44.2 bits (105), Expect = 2e-04
Identities = 20/155 (12%), Positives = 47/155 (30%), Gaps = 25/155 (16%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQV 761
+ H Q ++ Y AA+ + +G+ + L++ A F AL +
Sbjct: 135 FAVESEHDQAMAAYFTAAQ------LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188
Query: 762 RPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISN----- 815
P+ ++ + + + + + A E V +
Sbjct: 189 APEDPFVMHEVGVVA------FQNGEWKTAEKWF----LDALEKIKAIGNEVTVDKWEPL 238
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNITLW 850
K+ A + +AL + +N + +
Sbjct: 239 LNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY 273
Score = 40.0 bits (94), Expect = 0.006
Identities = 11/57 (19%), Positives = 25/57 (43%), Gaps = 5/57 (8%)
Query: 721 AARQCPSQSI--DPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
AR+ S++ + G F + E+D+A+ + +A Q+ ++Y+
Sbjct: 109 HARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYI 165
Score = 38.8 bits (91), Expect = 0.015
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
+ P + +G + +L ++ AVD F +AL +R D T + L
Sbjct: 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310
Score = 35.7 bits (83), Expect = 0.13
Identities = 15/163 (9%), Positives = 42/163 (25%), Gaps = 28/163 (17%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
+ DV L + ++ ++ P L +L
Sbjct: 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTL-------------- 66
Query: 791 LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ--------WEESQKQVDRARSIYERALDV 842
++ + F + +++V + + + AR +A +
Sbjct: 67 --VELNKANELFYLS---HKLVDLYP-SNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL 120
Query: 843 DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
+ W+ Y + + A + A ++ +
Sbjct: 121 EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPML 163
Score = 30.3 bits (69), Expect = 6.9
Identities = 6/30 (20%), Positives = 9/30 (30%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTAL 348
G +G+ + A F AL
Sbjct: 157 GCHLPMLYIGLEYGLTNNSKLAERFFSQAL 186
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum,
protein folding, tetratricopeptiderepeat, J domain,
unfolded protein respons; 3.00A {Homo sapiens} PDB:
2y4u_A
Length = 450
Score = 115 bits (291), Expect = 5e-27
Identities = 39/257 (15%), Positives = 88/257 (34%), Gaps = 10/257 (3%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
+ GD +AI +L+ + +AE+ + + +AI+ L
Sbjct: 146 LRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK 205
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLA 1726
++ N EA IS + +L +++ ++ + + KL +L
Sbjct: 206 LKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK----LDQDHKRCFAHYKQVKKLNKLI 261
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQS-IDPDVQNGLGVLFNLSDEYDKAVDC 1785
L + S Y + + PS + + + F+ ++ +A+
Sbjct: 262 ESAEE----LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRV 317
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
LQ+ PD+ + +EA++ Y TA + + + R L L
Sbjct: 318 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLK 377
Query: 1846 ANTQAVEHFLTALNQQA 1862
+ + + + + + A
Sbjct: 378 QSQKRDYYKILGVKRNA 394
Score = 115 bits (290), Expect = 6e-27
Identities = 39/248 (15%), Positives = 81/248 (32%), Gaps = 9/248 (3%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
LG++ L G L A+ AA +PDN + + A+ L+K +
Sbjct: 29 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLA 1726
++ A + + L +A D K + +SNP +A + K +
Sbjct: 89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL----KSNPSENEEKEAQSQLIKSDEMQ 144
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ S + + ++ C D +++ F E KA+
Sbjct: 145 RLRSQALNAFGSGD-YTAAIAFLDKILEVCVW---DAELRELRAECFIKEGEPRKAISDL 200
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
++A +++ D++ + ++ E ++ L+L R +
Sbjct: 201 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260
Query: 1847 NTQAVEHF 1854
A E
Sbjct: 261 IESAEELI 268
Score = 90.9 bits (226), Expect = 7e-19
Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 38/260 (14%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ G + + ++ + E L LG L Q A++ +
Sbjct: 7 HSSGVDLGTENLYFQSM-----------ADVEKHLELGKKLLAAGQLADALSQFHAAVDG 55
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRL 1725
+P N A + F AL L I + +A + L K +L
Sbjct: 56 DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI----QLKMDFTAARLQRGHLL-LKQGKL 110
Query: 1726 ANHTLTFRSPLSSREIHQQVLSL-------YLNAARQCPSQSIDPDVQNGLGVLFNLSDE 1778
+ + ++VL ++ S + L F D
Sbjct: 111 DE----------AEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQAL-NAFGSGD- 158
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
Y A+ L+V D+ L P +A+ A +L A Y +
Sbjct: 159 YTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKIS 218
Query: 1839 ITCVHLGANTQAVEHFLTAL 1858
LG + ++ L
Sbjct: 219 TLYYQLGDHELSLSEVRECL 238
Score = 53.5 bits (129), Expect = 5e-07
Identities = 15/195 (7%), Positives = 54/195 (27%), Gaps = 6/195 (3%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ +S A++ + + + L+ +++ ++ R L++ D
Sbjct: 193 PRKAISDLKAASKLKND---NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFA 249
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQ---HRKRKAFEDNIRKNRMVISNWIKYAQWEESQK 827
+ + + Y + + + + + +
Sbjct: 250 HYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDE 309
Query: 828 QVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKY 887
+ A + L ++ N+ E + + A ++ A Q
Sbjct: 310 KPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369
Query: 888 TYMEEMLENVAGKLF 902
+ +L+ + +
Sbjct: 370 EKAQRLLKQSQKRDY 384
Score = 49.7 bits (119), Expect = 7e-06
Identities = 9/77 (11%), Positives = 17/77 (22%)
Query: 1599 DNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658
+ + + AI + EPDN + E +A
Sbjct: 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA 348
Query: 1659 IAALSKCLSIEPKNLEA 1675
I + +
Sbjct: 349 IQDYETAQEHNENDQQI 365
Score = 43.9 bits (104), Expect = 4e-04
Identities = 28/218 (12%), Positives = 62/218 (28%), Gaps = 29/218 (13%)
Query: 674 ESNPR-PSAHKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDP 732
+SNP +A + K + + S + + ++ C D
Sbjct: 122 KSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD-YTAAIAFLDKILEVCVW---DA 177
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQK-------- 784
+++ F E KA+ ++A +++ D TE + + +
Sbjct: 178 ELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC 237
Query: 785 -ISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
D D R + H K+ + K I+ ++ + A S YE + +
Sbjct: 238 LKLDQDHKRCFAHYKQ---VKKLNKLIESAEELIRDGRYTD-------ATSKYESVMKTE 287
Query: 844 HRNITLWLKYTELEMRNR-QVNHARNLWDRAVTILPRA 880
++ A+ +
Sbjct: 288 PSIAEYTVRS----KERICHCFSKDEKPVEAIRVCSEV 321
Score = 42.7 bits (101), Expect = 0.001
Identities = 27/181 (14%), Positives = 55/181 (30%), Gaps = 19/181 (10%)
Query: 715 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFS 774
LS + A P + +F + A+ +Q++ DFT +
Sbjct: 46 LSQFHAAVDGDPD---NYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH 102
Query: 775 SLDFQPPKQKISDPDE-LRDYQ--------HRKRKAFEDNIRKNRMVISNWIKYAQWEES 825
L K DE D++ + K + + K+ + A
Sbjct: 103 LL------LKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQR-LRSQALNAFG 155
Query: 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
A + ++ L+V + L E ++ + A + A + + +Y
Sbjct: 156 SGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY 215
Query: 886 K 886
K
Sbjct: 216 K 216
Score = 38.9 bits (91), Expect = 0.016
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 3/78 (3%)
Query: 1604 NETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
N AL + L + AI E A + ++ ++ L + +Q +
Sbjct: 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDY 384
Query: 1661 ALSKCLSIEPKNLEALMA 1678
+ K E + A
Sbjct: 385 YKILGVKRNAKKQEIIKA 402
Score = 32.3 bits (74), Expect = 1.7
Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 33/164 (20%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D + LG + + A+ F +A+ PD + +
Sbjct: 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVF------LAMGKSKA 78
Query: 791 -LRDYQHRKRKAFE-----DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844
L D K + R R + + Q ++D A +++ L +
Sbjct: 79 ALPDLT----KVIQLKMDFTAARLQRGHL-----LLK----QGKLDEAEDDFKKVLKSNP 125
Query: 845 RNITLW------LKYTELEMRNRQVNHARNL--WDRAVTILPRA 880
+K E++ Q +A + A+ L +
Sbjct: 126 SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169
Score = 31.6 bits (72), Expect = 3.0
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 319 GFVRARYNLGITCVHLGANTQAVEHFLTAL 348
F AR G + G +A + F L
Sbjct: 92 DFTAARLQRGHLLLKQGKLDEAEDDFKKVL 121
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A
{Saccharomyces cerevisiae}
Length = 258
Score = 108 bits (273), Expect = 3e-26
Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 36/256 (14%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
A G + + AI + A + D + + E + AI+ L+ +
Sbjct: 9 KAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAVEQ 67
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY--KADALPSKLTRLA 1726
+ IS F + L LK I E + AD L +KL
Sbjct: 68 GREMRADYKVISKSFARIGNAYHKLGDLKKTI----EYYQKSLTEHRTADIL-TKLRNA- 121
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLG-VLFNLSDEYDKA 1782
++ L A ++P+ G F SD + A
Sbjct: 122 ----------------EKELKKAEAEAY------VNPEKAEEARLEGKEYFTKSD-WPNA 158
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
V + ++ P+D+R ++ A+LA EA+ + A++ P FVRA +
Sbjct: 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 218
Query: 1843 HLGANTQAVEHFLTAL 1858
+ A+E A
Sbjct: 219 AVKEYASALETLDAAR 234
Score = 82.2 bits (204), Expect = 4e-17
Identities = 30/228 (13%), Positives = 62/228 (27%), Gaps = 34/228 (14%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695
A+ + G + Q +AI +K + ++ L + + A+ T
Sbjct: 2 GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHK-DITYLNNRAAAEYEKGEYETAIST 60
Query: 1696 LKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752
L D + E + Y + + R+ N L
Sbjct: 61 LNDAV----EQGREMRADYKVISKS----FARIGN--------------AYHKLGDLKKT 98
Query: 1753 ARQCPSQSIDPDVQ--NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANG 1810
+ + +K + + V P+ + G
Sbjct: 99 IE------YYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTK 152
Query: 1811 NRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ AV+AY ++ +P R N L + +A+ A+
Sbjct: 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAI 200
Score = 54.9 bits (133), Expect = 6e-08
Identities = 14/106 (13%), Positives = 29/106 (27%), Gaps = 3/106 (2%)
Query: 1581 FSRNQRSSVSMHEYTFA-EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNA 1639
F+R + + + E + + + EA A P+ A
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQ--KSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKA 139
Query: 1640 EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685
E G P A+ A ++ + P++ +
Sbjct: 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK 185
Score = 47.9 bits (115), Expect = 1e-05
Identities = 8/75 (10%), Positives = 23/75 (30%), Gaps = 3/75 (4%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+A + P AI A +++P+ ++ + ++ A+
Sbjct: 169 APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE 228
Query: 1661 ALSKCLSIEPKNLEA 1675
L + + +
Sbjct: 229 TLDAARTKDAEVNNG 243
Score = 33.3 bits (77), Expect = 0.57
Identities = 5/42 (11%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 729 SIDPDVQ--NGLG-VLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ D+ N + + Y+ A+ A++ +
Sbjct: 33 ELHKDITYLNNRAAAEYEKGE-YETAISTLNDAVEQGREMRA 73
Score = 33.3 bits (77), Expect = 0.65
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
DP+ EY A++ +A +
Sbjct: 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNN 242
Score = 31.8 bits (73), Expect = 2.1
Identities = 7/54 (12%), Positives = 18/54 (33%), Gaps = 3/54 (5%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654
+ A ++ + SA+ L+AA ++ + + I +
Sbjct: 203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256
Score = 31.4 bits (72), Expect = 2.6
Identities = 22/124 (17%), Positives = 42/124 (33%), Gaps = 28/124 (22%)
Query: 729 SIDPD---VQNGLG-VLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQK 784
++P+ G F SD + AV + ++ P+ ++L K
Sbjct: 133 YVNPEKAEEARLEGKEYFTKSD-WPNAVKAYTEMIKRAPEDARGYSNRAAAL------AK 185
Query: 785 ISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKY----AQWEESQKQVDRARSIYERA 839
+ E + D KA I K+ N+++ A + + K+ A + A
Sbjct: 186 LMSFPEAIADCN----KA----IEKD----PNFVRAYIRKATAQIAVKEYASALETLDAA 233
Query: 840 LDVD 843
D
Sbjct: 234 RTKD 237
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin
ligase; 2.60A {Schizosaccharomyces pombe}
Length = 597
Score = 114 bits (286), Expect = 7e-26
Identities = 39/256 (15%), Positives = 77/256 (30%), Gaps = 34/256 (13%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ L K D ++ ++++ L +L + +A +K L I
Sbjct: 275 YMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI 334
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP-RPSAYKADALPSKLTRLAN 1727
+P NL+ + D + + +P + + A +
Sbjct: 335 DPYNLDVYPLHLASLHESGEKNKLYLISNDLV----DRHPEKAVTWLA---------VGI 381
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI--DPD---VQNGLGVLFNLSDEYDKA 1782
+ + AR+ S+S DP G F + E+D+A
Sbjct: 382 Y-------YLCVNKISE--------ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQA 426
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
+ + +A ++ + LG A E ++ L LG+
Sbjct: 427 ISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486
Query: 1843 HLGANTQAVEHFLTAL 1858
+ A+ HF AL
Sbjct: 487 NKSDMQTAINHFQNAL 502
Score = 111 bits (279), Expect = 5e-25
Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 19/233 (8%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
A+G L + A Y ++ +P W+ S A + QAI+A + +
Sbjct: 377 LAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLA 1726
+ + + + A + L+ + +P + +
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ---YDPLLLNELGVVA-FNKSDMQ 492
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ Q L L LG + YD A+D
Sbjct: 493 T----------AINHFQNALLLVKKTQSNEKP---WAATWANLGHAYRKLKMYDAAIDAL 539
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
L + +D+ + + + P A+ H +L +SP + A L
Sbjct: 540 NQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKR 592
Score = 109 bits (275), Expect = 1e-24
Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 33/251 (13%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
G+ L + P+ A WL++GI + +A SK +++P+ A +
Sbjct: 352 SGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWI 411
Query: 1678 AISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735
+ F E A+ ++ G P + +L N
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQH----MQLGNI------- 457
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV--- 1792
++ DP + N LGV+ + A++ F++AL +
Sbjct: 458 -------LLANEYLQSSYALFQY---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507
Query: 1793 ----RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
+ W LG + + A++A + L LS + + +H
Sbjct: 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPG 567
Query: 1849 QAVEHFLTALN 1859
A+ H +L
Sbjct: 568 LAITHLHESLA 578
Score = 109 bits (274), Expect = 2e-24
Identities = 41/258 (15%), Positives = 76/258 (29%), Gaps = 31/258 (12%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ + + +P N +V+ SL E+ + + + +
Sbjct: 309 LCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLAN 1727
P+ +A+ I + + +A +P+ A+ A
Sbjct: 369 HPEKAVTWLAVGIYYLCVNKISEARRYFSKSS----TMDPQFGPAW---------IGFA- 414
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
H+ + H Q +S Y AAR LG+ A + +
Sbjct: 415 HSF------AIEGEHDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQ 465
Query: 1788 SALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-------SPGFVRARYNLGIT 1840
S+ + D L N LG N + + A+ + AL L + NLG
Sbjct: 466 SSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHA 525
Query: 1841 CVHLGANTQAVEHFLTAL 1858
L A++ L
Sbjct: 526 YRKLKMYDAAIDALNQGL 543
Score = 73.3 bits (180), Expect = 5e-13
Identities = 27/260 (10%), Positives = 62/260 (23%), Gaps = 53/260 (20%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+ + A L E L A + G +A
Sbjct: 163 LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKEC 222
Query: 1662 LSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721
+ L ++ K EA
Sbjct: 223 YKEALMVDAKCYEAF--------------------------------------------- 237
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
+L ++ L L++ E VL L + + + + L + + +
Sbjct: 238 -DQLVSNHL-----LTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHE--DELR 289
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
+ + S++ S L +L +R + + L++ P + +
Sbjct: 290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL 349
Query: 1842 VHLGANTQAVEHFLTALNQQ 1861
G + +++
Sbjct: 350 HESGEKNKLYLISNDLVDRH 369
Score = 56.4 bits (136), Expect = 7e-08
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 3/90 (3%)
Query: 1597 AEDNPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653
+ + A LG + +AI L ++A V ++ + +
Sbjct: 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKK 564
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICF 1683
AI L + L+I P + A +
Sbjct: 565 IPGLAITHLHESLAISPNEIMASDLLKRAL 594
Score = 48.7 bits (116), Expect = 2e-05
Identities = 24/198 (12%), Positives = 53/198 (26%), Gaps = 24/198 (12%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
++ Q ++ + G ++ +D+A +C++ AL V E
Sbjct: 180 RKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ 239
Query: 772 LFS------------SLDFQPPKQKISDPDELRDY------QHRKRKAFEDNIRKNRMVI 813
L S L D LR + +
Sbjct: 240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN 299
Query: 814 SN------WIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHAR 867
+ A + + +I + L++D N+ ++ + + + N
Sbjct: 300 GLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLY 359
Query: 868 NLWDRAVTILPRANQFWY 885
+ + V P W
Sbjct: 360 LISNDLVDRHPEKAVTWL 377
Score = 42.5 bits (100), Expect = 0.001
Identities = 23/144 (15%), Positives = 38/144 (26%), Gaps = 17/144 (11%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
H Q +S Y AAR LG+ A + +S+ + LL
Sbjct: 423 HDQAISAYTTAARLFQG---THLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLN 479
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKA---FEDNIRKNRMVISNWIKYAQWEESQ 826
L SD + +Q A + + + W
Sbjct: 480 ELGVVA------FNKSDMQTAINHFQ----NALLLVKKTQSNEKPWAATWANLGHAYRKL 529
Query: 827 KQVDRARSIYERALDVDHRNITLW 850
K D A + L + + +
Sbjct: 530 KMYDAAIDALNQGLLLSTNDANVH 553
Score = 40.2 bits (94), Expect = 0.007
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
D +V + +++ A+ +L + P+
Sbjct: 549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585
Score = 39.1 bits (91), Expect = 0.015
Identities = 13/159 (8%), Positives = 49/159 (30%), Gaps = 21/159 (13%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D+ + + + L++ P ++ +SL + + ++
Sbjct: 304 SSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASL------HESGEKNK 357
Query: 791 LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLW 850
L + + + + + W+ + ++ AR + ++ +D + W
Sbjct: 358 LYLISN---DLVDRH-PEKAVT---WLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAW 410
Query: 851 LK----YTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
+ + + + A + + A + + +
Sbjct: 411 IGFAHSFAIEG----EHDQAISAYTTAARLFQGTHLPYL 445
Score = 38.7 bits (90), Expect = 0.021
Identities = 12/166 (7%), Positives = 51/166 (30%), Gaps = 21/166 (12%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
++DP G F + E+D+A+ + +A ++ ++L ++
Sbjct: 401 TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH------MQL 454
Query: 786 SDPDE-LRDYQHRKRKAFEDNIR-KNRMVISN----WIKYAQWEESQKQVDRARSIYERA 839
+ + ++ + + ++++ + + + A + ++
Sbjct: 455 GNILLANEYL----QSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT 508
Query: 840 LDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
+ W + + + A + ++ + +
Sbjct: 509 QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHT 554
Score = 37.1 bits (86), Expect = 0.069
Identities = 24/227 (10%), Positives = 58/227 (25%), Gaps = 29/227 (12%)
Query: 661 SEFFSKPVDTPGQESNPR----------PSAHKADALPSKLTRLANHTLTFRSPLSSREI 710
+ + P +N P + A+ + + L LS +
Sbjct: 27 NAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANNTSTDGSFLKERNAQNTDSLSREDY 86
Query: 711 HQQVLSLYLN---------AARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 761
+ L + + +P+ L ++ + +Y +A
Sbjct: 87 LRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY 146
Query: 762 RPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ 821
+ F + L + RK ++ + ++ +
Sbjct: 147 NRSSACRYLAAFCLVK----LYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASM 202
Query: 822 WE------ESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQ 862
+ DRA+ Y+ AL VD + + + +
Sbjct: 203 CYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD 249
Score = 36.7 bits (85), Expect = 0.081
Identities = 6/57 (10%), Positives = 19/57 (33%), Gaps = 3/57 (5%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++ + + + P +G+ + ++ +A F + + P F
Sbjct: 355 KNKLYLISNDLVDRHPE---KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP 408
Score = 36.4 bits (84), Expect = 0.11
Identities = 10/44 (22%), Positives = 16/44 (36%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN 1652
A+ L + AI +L + P+ L +L EN
Sbjct: 554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEEN 597
Score = 34.4 bits (79), Expect = 0.41
Identities = 10/61 (16%), Positives = 16/61 (26%), Gaps = 3/61 (4%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
Q L L LG + YD A+D L + + +
Sbjct: 499 QNALLLVKKTQSNEKP---WAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTA 555
Query: 772 L 772
+
Sbjct: 556 I 556
Score = 30.2 bits (68), Expect = 7.4
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 313 IEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTALN 349
+ Q G LG+ + LG A E+ ++
Sbjct: 434 ARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYA 469
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing
protein, structur genomics, joint center for structural
genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Length = 208
Score = 105 bits (263), Expect = 2e-25
Identities = 25/222 (11%), Positives = 61/222 (27%), Gaps = 41/222 (18%)
Query: 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLK 1697
+ + L + E Q+ QA++ + +++ E
Sbjct: 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMY-------------------YW 43
Query: 1698 DKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCP 1757
+ E + + + A A + + Y ++ P
Sbjct: 44 TNVDKNSEISSKLATELALAY------------------KKNRNYDKAYLFYKELLQKAP 85
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GNRPEEA 1816
+ + D + + A+ + LQ+ D+ LG + ++
Sbjct: 86 N---NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+E + L ARY G++ + +A +
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVI 184
Score = 80.2 bits (198), Expect = 9e-17
Identities = 21/127 (16%), Positives = 43/127 (33%), Gaps = 7/127 (5%)
Query: 1740 EIHQQVLSLYLNAA------RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
+Q ++L ++ + I + L + + + YDKA ++ LQ
Sbjct: 25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ-AVE 1852
P++ + ++A+ Y LQL + A LG + +E
Sbjct: 85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLE 144
Query: 1853 HFLTALN 1859
L+
Sbjct: 145 TDYKKLS 151
Score = 75.2 bits (185), Expect = 5e-15
Identities = 27/207 (13%), Positives = 56/207 (27%), Gaps = 57/207 (27%)
Query: 1591 MHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLA 1650
M+ +T + N + A L + + A L+ + ++ P+N + +
Sbjct: 40 MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV 99
Query: 1651 ENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD-ALDTLKDKIRPGQESNPR 1709
Q+ A+ K L +E NL A + + + A L+T K+ S +
Sbjct: 100 CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKL----SSPTK 155
Query: 1710 PSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGL 1769
+
Sbjct: 156 ----------------------------------------------------MQYARYRD 163
Query: 1770 GVLFNLSDEYDKAVDCFRSALQVRPDD 1796
G+ + Y+KA + + + P
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPST 190
Score = 68.6 bits (168), Expect = 8e-13
Identities = 21/117 (17%), Positives = 35/117 (29%), Gaps = 18/117 (15%)
Query: 1758 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----------------RLWN 1801
QS+D +Q + +AV FR + + D + +L
Sbjct: 1 GQSVDEMLQKVS-AAIEA-GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLAT 58
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L + ++A Y LQ +P V V G A+ + L
Sbjct: 59 ELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKIL 115
Score = 48.6 bits (116), Expect = 4e-06
Identities = 24/169 (14%), Positives = 61/169 (36%), Gaps = 16/169 (9%)
Query: 727 SQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKIS 786
QS+D +Q + +AV FR + + D TE+ Y ++++D
Sbjct: 1 GQSVDEMLQKVS-AAIEA-GQNGQAVSYFRQTIALNIDRTEM--YYWTNVDKNSEISSKL 56
Query: 787 DPDELRDYQHRKR-----KAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALD 841
+ Y+ + +++ ++K + A+ + + Q A +YE+ L
Sbjct: 57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116
Query: 842 VDHRNITLWLK----YTELEMRNRQVNHARNLWDRAVTILPRANQFWYK 886
++ N+ + Y + ++ + ++ + Y+
Sbjct: 117 LEADNLAANIFLGNYYYLTAEQEKK---KLETDYKKLSSPTKMQYARYR 162
Score = 48.2 bits (115), Expect = 5e-06
Identities = 22/177 (12%), Positives = 57/177 (32%), Gaps = 20/177 (11%)
Query: 709 EIHQQVLSLYLNAA------RQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
+Q ++L ++ + I + L + + + YDKA ++ LQ
Sbjct: 25 SYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84
Query: 763 PDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ 821
P+ + L + LR Y+ K + + + + + ++
Sbjct: 85 PNNVDCLEACAEMQ------VCRGQEKDALRMYE----KILQ--LEADNLAANIFLGNY- 131
Query: 822 WEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
+ + +Q + + L + + ++ + ARN + + P
Sbjct: 132 YYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188
Score = 36.3 bits (84), Expect = 0.049
Identities = 6/39 (15%), Positives = 13/39 (33%), Gaps = 3/39 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
S + G+ + Y+KA + + + P
Sbjct: 151 SSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189
Score = 30.5 bits (69), Expect = 4.8
Identities = 7/41 (17%), Positives = 11/41 (26%), Gaps = 2/41 (4%)
Query: 320 FVRARYNLGITCVHLGANTQAVEHFLTA--LNQQAAAHDGL 358
ARY G++ + +A A L
Sbjct: 156 MQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Length = 530
Score = 108 bits (271), Expect = 2e-24
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 1/98 (1%)
Query: 802 FEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNR 861
E + +N + W E + +D+AR YER + + W Y E E++ +
Sbjct: 2 AEKKLEENPYDLDAWSILI-REAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAK 60
Query: 862 QVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAG 899
+ L+ R + + + + +Y+ E +
Sbjct: 61 NYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPS 98
Score = 70.7 bits (172), Expect = 2e-12
Identities = 30/205 (14%), Positives = 63/205 (30%), Gaps = 21/205 (10%)
Query: 708 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ + ++Y A +++ + +Y+K + L +
Sbjct: 299 KLFSDEAANIYERAISTLLKKNML--LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT 356
Query: 768 LLVYLFSSLDFQPPKQKISDPDELRDYQHRK-RKAFEDNIRKNRMVISNWIKYAQWE-ES 825
L+ + R + R F+ R ++ A E
Sbjct: 357 LVYIQYMKF-------------ARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC 403
Query: 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP----RAN 881
K A I+E L L Y + + N+ R L++R +T ++
Sbjct: 404 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 463
Query: 882 QFWYKYTYMEEMLENVAGKLFVFHR 906
+ W ++ E + ++A L V R
Sbjct: 464 EIWARFLAFESNIGDLASILKVEKR 488
Score = 64.5 bits (156), Expect = 2e-10
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 10/106 (9%)
Query: 799 RKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD----HRNITLWLKYT 854
K FE ++K + + Y + + + R ++ER L ++ +W ++
Sbjct: 411 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFL 470
Query: 855 ELEMRNRQVNHARNLWDRAVTILPRAN------QFWYKYTYMEEML 894
E + + R T +Y +M+
Sbjct: 471 AFESNIGDLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYP 516
Score = 61.4 bits (148), Expect = 2e-09
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 835 IYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEML 894
+ E+ L+ + ++ W E +N+ ++ AR ++R V P + +FW Y E
Sbjct: 1 MAEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKA 59
Query: 895 ENVAGKLFVFHR--DSISQVTLWLGALTLSLEGLGS 928
+N +F R + + LW L+ E G
Sbjct: 60 KNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGK 95
Score = 60.3 bits (145), Expect = 4e-09
Identities = 21/110 (19%), Positives = 39/110 (35%), Gaps = 9/110 (8%)
Query: 797 RKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTEL 856
+ RK +E + + W Y + E K D+ +++R L +I LW Y
Sbjct: 30 KARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM-KVLHIDLWKCYLSY 88
Query: 857 EMRNRQVNHA-----RNLWDRAVT---ILPRANQFWYKYTYMEEMLENVA 898
+ + +D A+ + + Q W Y + +E V
Sbjct: 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVG 138
Score = 60.3 bits (145), Expect = 4e-09
Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 16/186 (8%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDN 805
YDK F+ L YL ++ ++ + D
Sbjct: 60 KNYDKVEKLFQRCLMKVLHIDLWKCYL------SYVRETKGKLPSYKEKMAQAYDFALDK 113
Query: 806 IRKNRMVISNWIKYAQWEES---------QKQVDRARSIYERALDVDHRNI-TLWLKYTE 855
I M W+ Y + + +++ R +Y+R NI LW Y +
Sbjct: 114 IGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNK 173
Query: 856 LEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDSISQVTLW 915
E + + DR+ + T M+ + N QV +W
Sbjct: 174 YEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMW 233
Query: 916 LGALTL 921
+
Sbjct: 234 KKYIQW 239
Score = 52.9 bits (126), Expect = 7e-07
Identities = 32/195 (16%), Positives = 62/195 (31%), Gaps = 29/195 (14%)
Query: 741 LFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQK----------ISDPDE 790
+ + S +Y A + V + Q +Q S+P
Sbjct: 187 IEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246
Query: 791 LRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQV--------------DRAR 833
D R A+E + W + AQ+ E ++ D A
Sbjct: 247 TEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306
Query: 834 SIYERALDVDH-RNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF-WYKYTYME 891
+IYERA+ +N+ L+ Y + E + ++++R + I + +Y
Sbjct: 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFA 366
Query: 892 EMLENVAGKLFVFHR 906
E + +F +
Sbjct: 367 RRAEGIKSGRMIFKK 381
Score = 44.5 bits (104), Expect = 3e-04
Identities = 17/125 (13%), Positives = 40/125 (32%), Gaps = 10/125 (8%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLD 777
AR+ V L + + S + A F L+ D E ++ +D
Sbjct: 378 IFKKAREDARTRHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAY---ID 433
Query: 778 FQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYE 837
+ +++ + R R + K+ + W ++ +E + + + +
Sbjct: 434 YL---SHLNEDNNTRVLFERVLTSGSLPPEKSGEI---WARFLAFESNIGDLASILKVEK 487
Query: 838 RALDV 842
R
Sbjct: 488 RRFTA 492
Score = 37.5 bits (86), Expect = 0.051
Identities = 17/141 (12%), Positives = 38/141 (26%), Gaps = 40/141 (28%)
Query: 797 RKRKAFEDNIRK-NRMVISNWIKYAQWEESQKQVDRARSIYERALDV------------- 842
R+ ++ + W Y ++EE + I +R+ D
Sbjct: 148 AVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETV 207
Query: 843 ------------------DHRNITLWLKYTELEMRNRQ--------VNHARNLWDRAVTI 876
+ + + +W KY + E N +++ + +
Sbjct: 208 MKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV 267
Query: 877 LPRANQFWYKYTYMEEMLENV 897
L WY+ E +
Sbjct: 268 LGHHPDIWYEAAQYLEQSSKL 288
Score = 30.6 bits (68), Expect = 6.9
Identities = 13/68 (19%), Positives = 19/68 (27%)
Query: 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673
E D A E K+ D E L+ L+ +D + L+
Sbjct: 400 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP 459
Query: 1674 EALMAISI 1681
E I
Sbjct: 460 EKSGEIWA 467
Score = 29.8 bits (66), Expect = 9.9
Identities = 12/80 (15%), Positives = 20/80 (25%), Gaps = 1/80 (1%)
Query: 1749 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808
AR+ V L + + S + A F L+ D L+
Sbjct: 378 IFKKAREDARTRHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436
Query: 1809 NGNRPEEAVEAYHTALQLSP 1828
+ N + L
Sbjct: 437 HLNEDNNTRVLFERVLTSGS 456
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria
translocation, allosteric REG phosphoprotein, TPR repeat,
ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A
3fp4_A 3lca_A
Length = 537
Score = 108 bits (271), Expect = 3e-24
Identities = 41/289 (14%), Positives = 89/289 (30%), Gaps = 32/289 (11%)
Query: 1600 NPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+P Q + A G + AI Y + A + +P+ + ++
Sbjct: 17 SPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLE 76
Query: 1657 QAIAALSKCLSIEPKNLEAL----------------------MAISICFTNEACLHDALD 1694
+ I +K L I+P + +AL ++++ F +
Sbjct: 77 KVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLER 136
Query: 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRS-----PLSSREIHQQVLSLY 1749
L + N + + T LA+ F S +++ + +L
Sbjct: 137 NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALL 196
Query: 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809
+A ++ S + D +L +D Y + +R + + G
Sbjct: 197 SDALQRLYS-ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL 255
Query: 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
N +A ++ L P + L +T + + + F A+
Sbjct: 256 KNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAV 303
Score = 105 bits (264), Expect = 2e-23
Identities = 36/245 (14%), Positives = 73/245 (29%), Gaps = 29/245 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP--QAIAALSKCLSIEPKNLEA 1675
+ +A L A ++ + + L D ++A + + A
Sbjct: 186 SSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALA 245
Query: 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY--KADALPSKLTRLANHTLTFR 1733
L I + L DA L++ I +P P++Y A L +
Sbjct: 246 LCYTGIFHFLKNNLLDAQVLLQESI----NLHPTPNSYIFLALTL-ADKENS-------- 292
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 1793
Q+ + A P P G ++ + +Y A + F+ A +
Sbjct: 293 ---------QEFFKFFQKAVDLNPE---YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
P++ + +L L + E+ ++ P G A++
Sbjct: 341 PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQ 400
Query: 1854 FLTAL 1858
+ A
Sbjct: 401 YDIAK 405
Score = 100 bits (250), Expect = 1e-21
Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 48/278 (17%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
E A A G + +L A + L+ + P ++ L ++LA+ E +
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHP-TPNSYIFLALTLADKENSQEFFK 297
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
K + + P+ + +A + + NP Y A
Sbjct: 298 FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ----SLNPENVYPYIQLACL 353
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
L K + + + + + P+ P+V +
Sbjct: 354 L-YKQGKF-----------------TESEAFFNETKLKFPT---LPEVPTFFAEILTDRG 392
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG----------------NRPEEAVEAYH 1821
++D A+ + A ++ ++ +G + + A++
Sbjct: 393 DFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLT 452
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
A +L P +A+ L + + +A+E F +
Sbjct: 453 KACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490
Score = 93.6 bits (233), Expect = 2e-19
Identities = 23/238 (9%), Positives = 64/238 (26%), Gaps = 26/238 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + + + + A P+ + G + A K S+ P
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP-RPSAY--KADALPSKLTRLAN 1727
+N+ + ++ + ++ + P P A+ L +
Sbjct: 342 ENVYPYIQLACLLYKQGKFTESEAFFNETK----LKFPTLPEVPTFFAEIL-TDRGDFDT 396
Query: 1728 HTLTFRSPLSSREIHQQVLSL-------YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYD 1780
+ + + L ++ ++ Q+ ++++
Sbjct: 397 ----------AIKQYDIAKRLEEVQEKIHVGIG-PLIGKATILARQSSQDPTQLDEEKFN 445
Query: 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
A+ A ++ P + L + +EA+E + + L+
Sbjct: 446 AAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATT 503
Score = 90.9 bits (226), Expect = 1e-18
Identities = 28/268 (10%), Positives = 66/268 (24%), Gaps = 29/268 (10%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+E A S + + A GI
Sbjct: 201 QRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLL 260
Query: 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY-- 1713
A L + +++ P + + +++ ++ + + + + NP P Y
Sbjct: 261 DAQVLLQESINLHPTP-NSYIFLALTLADKENSQEFFKFFQKAV----DLNPEYPPTYYH 315
Query: 1714 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773
+ L + + A P + L L
Sbjct: 316 RGQMY-FILQDY-----------------KNAKEDFQKAQSLNPE---NVYPYIQLACLL 354
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
++ ++ F P + L + + A++ Y A +L +
Sbjct: 355 YKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+G + T L+++
Sbjct: 415 HVGIGPLIGKATILARQSSQDPTQLDEE 442
Score = 82.5 bits (204), Expect = 6e-16
Identities = 32/234 (13%), Positives = 69/234 (29%), Gaps = 18/234 (7%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
GQ D +A + A P+N ++ L L + + ++ A ++ P
Sbjct: 316 RGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFP 375
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
E + T+ A+ ++ + + K T LA
Sbjct: 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE---VQEKIHVGIGPLI-GKATILARQ 431
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLFNLSDEYDKAVDC 1785
+ + E + L A +DP + GL L ++ D+A++
Sbjct: 432 SSQDPT-QLDEEKFNAAIKLLTKAC------ELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
F + + + A + ++ + A + G+
Sbjct: 485 FEDSAILARTMDEKLQ--ATTFAEAAKIQKRLRADPIISAKMELTLARYRAKGM 536
Score = 79.8 bits (197), Expect = 4e-15
Identities = 21/136 (15%), Positives = 55/136 (40%), Gaps = 10/136 (7%)
Query: 1760 SIDPDVQ-------NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812
+ P + G F + +++A+ ++ A+++ P++ ++ + A +
Sbjct: 15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGD 74
Query: 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ---QAATHDGLT 1869
E+ +E AL++ P +A LG T A+ A+ + +
Sbjct: 75 LEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134
Query: 1870 PHGLEPRAVKEMSDSI 1885
L +A+K +++++
Sbjct: 135 ERNLNKQAMKVLNENL 150
Score = 73.2 bits (180), Expect = 4e-13
Identities = 38/275 (13%), Positives = 72/275 (26%), Gaps = 38/275 (13%)
Query: 1619 GDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
G + + P A + G + +AI + ++P
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV 60
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALP------------ 1719
IS C+ + L ++ + E P A +A A
Sbjct: 61 FYSNISACYISTGDLEKVIEFTTKAL----EIKPDHSKALLRRASANESLGNFTDAMFDL 116
Query: 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSI-----DPDVQNGLGVL-- 1772
S L+ + P+ R +++Q + + + + + + + G+
Sbjct: 117 SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176
Query: 1773 ------FNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN--GNRPEEAVEAYHTAL 1824
N S YD A ALQ + + L + + A
Sbjct: 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDD 236
Query: 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
L A GI A ++N
Sbjct: 237 PLRENAALALCYTGIFHFLKNNLLDAQVLLQESIN 271
Score = 52.8 bits (127), Expect = 1e-06
Identities = 13/83 (15%), Positives = 27/83 (32%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+ +L + +AI L A + +P + + + L + E+ +AI
Sbjct: 423 GKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAI 482
Query: 1660 AALSKCLSIEPKNLEALMAISIC 1682
+ E L A +
Sbjct: 483 ELFEDSAILARTMDEKLQATTFA 505
Score = 42.8 bits (101), Expect = 0.001
Identities = 31/186 (16%), Positives = 63/186 (33%), Gaps = 25/186 (13%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ + Y A P+ +P + + + + + +K ++ AL+++PD ++ L+
Sbjct: 41 FNEAIKYYQYAIELDPN---EPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALL 97
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQV 829
S+ + + + + + D D M+ N K A +
Sbjct: 98 RRASAN------ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAM----KVLN 147
Query: 830 DRARSIYERALDVDHRNITLW------LKYTELEMRNRQVNHARNLWDRAVTILPRANQF 883
+ R V N +L + E+ N N+ D A +L A Q
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNY-----DTAYALLSDALQR 202
Query: 884 WYKYTY 889
Y T
Sbjct: 203 LYSATD 208
Score = 41.6 bits (98), Expect = 0.002
Identities = 15/121 (12%), Positives = 40/121 (33%), Gaps = 6/121 (4%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
P V + ++D A+ + A ++ ++ V + + +
Sbjct: 372 LKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQ 431
Query: 786 SDPDELRDYQHRKRKAFED-N--IRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
S D + + + A + + I AQ + +++D A ++E + +
Sbjct: 432 SSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491
Query: 843 D 843
Sbjct: 492 A 492
Score = 41.2 bits (97), Expect = 0.003
Identities = 17/114 (14%), Positives = 35/114 (30%), Gaps = 15/114 (13%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
P G ++ + +Y A + F+ A + P+ + L L K E
Sbjct: 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLL------YKQGKFTE 362
Query: 791 -LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
+ + K + +A+ + D A Y+ A ++
Sbjct: 363 SEAFF----NET----KLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408
Score = 37.0 bits (86), Expect = 0.060
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 729 SIDPDVQ---NGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELL 769
+DP + GL L ++ D+A++ F + + E L
Sbjct: 456 ELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL 499
Score = 36.6 bits (85), Expect = 0.077
Identities = 16/148 (10%), Positives = 47/148 (31%), Gaps = 17/148 (11%)
Query: 704 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 763
+++ + +L +A ++ S + D +L +D Y + +R
Sbjct: 182 SVNTSSNYDTAYALLSDALQRLYS-ATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRE 240
Query: 764 DFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQW 822
+ L Y ++ + Q ++ + N ++I A
Sbjct: 241 NAALALCYTGIFH------FLKNNLLDAQVLLQ----ESINLHPTPN-----SYIFLALT 285
Query: 823 EESQKQVDRARSIYERALDVDHRNITLW 850
++ +++A+D++ +
Sbjct: 286 LADKENSQEFFKFFQKAVDLNPEYPPTY 313
Score = 35.9 bits (83), Expect = 0.16
Identities = 19/180 (10%), Positives = 56/180 (31%), Gaps = 19/180 (10%)
Query: 709 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
+++ +LS + G+ L + A + ++ + P
Sbjct: 223 DMYHSLLSANTVDDPLREN---AALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNS 278
Query: 769 LVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQK 827
++L +L + E + +Q KA + N + Q +
Sbjct: 279 YIFLALTL------ADKENSQEFFKFFQ----KA----VDLNPEYPPTYYHRGQMYFILQ 324
Query: 828 QVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKY 887
A+ +++A ++ N+ +++ L + + + ++ P + +
Sbjct: 325 DYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384
Score = 34.7 bits (80), Expect = 0.38
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 8/69 (11%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ-----D 1655
+ + A L Q KL+ + AI E +A E + + A Q D
Sbjct: 458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQKRLRAD 517
Query: 1656 PQAIAALSK 1664
P A +
Sbjct: 518 PIISAKMEL 526
Score = 31.2 bits (71), Expect = 4.2
Identities = 6/47 (12%), Positives = 19/47 (40%), Gaps = 7/47 (14%)
Query: 729 SIDPDVQ-------NGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
+ P + G F + +++A+ ++ A+++ P+
Sbjct: 15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVF 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP:
k.38.1.1
Length = 243
Score = 102 bits (257), Expect = 4e-24
Identities = 35/266 (13%), Positives = 79/266 (29%), Gaps = 38/266 (14%)
Query: 1590 SMHEYTFA-EDNPMQNETN---AFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSL 1645
S H + + P + GD A A ++ ++A +++
Sbjct: 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINF 63
Query: 1646 GISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQE 1705
L+ + +A+A K L ++ A + + +A D + +
Sbjct: 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKAL----R 119
Query: 1706 SNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID 1762
+ + L KL + + L A ++
Sbjct: 120 AGMENGDLFYMLGTVL-VKLEQP-----------------KLALPYLQRAV------ELN 155
Query: 1763 PD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
+ + G+ D+A+ F + + P + + G + A E+A+E
Sbjct: 156 ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEM 215
Query: 1820 YHTALQLSPGFVRARYNLGITCVHLG 1845
A+ + P + A + + H
Sbjct: 216 LDKAIDIQPDHMLALHAKKLLGHHHH 241
Score = 91.4 bits (228), Expect = 2e-20
Identities = 35/248 (14%), Positives = 82/248 (33%), Gaps = 38/248 (15%)
Query: 1621 LPSAILYLEAAAKQEPDNAEVW----LSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676
+ S+ + ++ P + + +E +A A +K + ++
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPY 60
Query: 1677 MAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFR 1733
+ + ++ L AL + E + +AY +
Sbjct: 61 INFANLLSSVNELERALAFYDKAL----ELDSSAATAYYGAGNVY-VVKEMY-------- 107
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSAL 1790
++ ++ A R + + LG + ++ A+ + A+
Sbjct: 108 ---------KEAKDMFEKALR------AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAV 152
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
++ +D+ + G LAN +EA+ + + PG A YN G+T + +A
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA 212
Query: 1851 VEHFLTAL 1858
+E A+
Sbjct: 213 LEMLDKAI 220
Score = 64.5 bits (158), Expect = 4e-11
Identities = 29/208 (13%), Positives = 56/208 (26%), Gaps = 34/208 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
+L A+ + + A + + A + G E +A K L
Sbjct: 63 FANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM 122
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
+N + + AL L+ + E N A L + L
Sbjct: 123 ENGDLFYMLGTVLVKLEQPKLALPYLQRAV----ELNENDTEARFQFGMCL-ANEGML-- 175
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVD 1784
+ LS + DP GV + + +KA++
Sbjct: 176 ---------------DEALSQFAAVT------EQDPGHADAFYNAGVTYAYKENREKALE 214
Query: 1785 CFRSALQVRPDDSRLWNRLGASLANGNR 1812
A+ ++PD + + +
Sbjct: 215 MLDKAIDIQPDHMLALHAKKLLGHHHHH 242
Score = 38.3 bits (90), Expect = 0.017
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+D G G ++ + + Y +A D F AL+ + +
Sbjct: 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD 126
Score = 36.7 bits (86), Expect = 0.046
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
DP GV + + +KA++ A+ ++PD
Sbjct: 187 EQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHML 228
Score = 36.3 bits (85), Expect = 0.058
Identities = 6/42 (14%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ + LG + ++ A+ + A+++ + TE
Sbjct: 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTE 160
Score = 36.0 bits (84), Expect = 0.079
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++ + + G+ D+A+ F + + P +
Sbjct: 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHAD 194
Score = 35.6 bits (83), Expect = 0.11
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 6/62 (9%)
Query: 706 SSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDF 765
SS H L + + + +Y+KA + F A++ +
Sbjct: 3 SSHHHHHHSSGLVPRGS------HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKED 56
Query: 766 TE 767
Sbjct: 57 AI 58
Score = 35.2 bits (82), Expect = 0.15
Identities = 5/42 (11%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ + L + +E ++A+ + AL++
Sbjct: 51 EENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAAT 92
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A
{Thermus thermophilus}
Length = 217
Score = 99.5 bits (249), Expect = 2e-23
Identities = 42/262 (16%), Positives = 78/262 (29%), Gaps = 53/262 (20%)
Query: 1602 MQNETNA-FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
MQ LG + G +A+ E A K+ P + E L + + A+
Sbjct: 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALE 60
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720
++ P+ L M +S + + + K + AL
Sbjct: 61 NGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYL--------------EQALSV 106
Query: 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSD 1777
+A R ++P + G+++ L
Sbjct: 107 ----------------------------LKDAER------VNPRYAPLHLQRGLVYALLG 132
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
E DKA + AL + + + L + R +EA+ Y AL+ +P + R
Sbjct: 133 ERDKAEASLKQALALED-TPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRY 191
Query: 1838 GITCVHLGANTQAVEHFLTALN 1859
+ G +A +
Sbjct: 192 ASALLLKGKAEEAARAAALEHH 213
Score = 81.8 bits (203), Expect = 3e-17
Identities = 22/99 (22%), Positives = 31/99 (31%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
LGV YD A+ F AL+ P D L + A+E
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGK 63
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
T + +P ++ L V L + E L Q
Sbjct: 64 TLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102
Score = 71.4 bits (176), Expect = 8e-14
Identities = 29/229 (12%), Positives = 58/229 (25%), Gaps = 68/229 (29%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP-----------QAI 1659
L + +L+ G + A+ + + P ++ L + + QA+
Sbjct: 45 LARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQAL 104
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719
+ L + P+ + + + A +LK + P
Sbjct: 105 SVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQAL----ALEDTPEIR------ 154
Query: 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEY 1779
+ L L+
Sbjct: 155 -----------------------------------------------SALAELYLSMGRL 167
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
D+A+ + AL+ P D L R ++L + EEA A
Sbjct: 168 DEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHHHHH 216
Score = 37.9 bits (89), Expect = 0.017
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 729 SIDPDVQ--NGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+++ + + L L+ D+A+ + AL+ P +
Sbjct: 146 ALEDTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD 186
Score = 37.1 bits (87), Expect = 0.028
Identities = 4/42 (9%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+P L + A++ ++ + P +
Sbjct: 33 KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG 74
Score = 37.1 bits (87), Expect = 0.030
Identities = 11/37 (29%), Positives = 13/37 (35%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
LGV YD A+ F AL+ P E
Sbjct: 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE 40
Score = 32.1 bits (74), Expect = 1.3
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 3/39 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
++P + G+++ L E DKA + AL +
Sbjct: 112 RVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150
Score = 31.0 bits (71), Expect = 2.6
Identities = 7/53 (13%), Positives = 14/53 (26%), Gaps = 14/53 (26%)
Query: 729 SIDPD---VQNGLG-VLFNLSD----------EYDKAVDCFRSALQVRPDFTE 767
+ P L L ++A+ + A +V P +
Sbjct: 67 ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP 119
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response,
DNA repair, gene regulation; 2.05A {Mus musculus}
Length = 474
Score = 103 bits (259), Expect = 6e-23
Identities = 38/273 (13%), Positives = 79/273 (28%), Gaps = 27/273 (9%)
Query: 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE-N 1652
Y F D+ + + A +++ Q ++ + +E A+ + G +L
Sbjct: 58 YCF-RDSYFETHSVEDAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTP 116
Query: 1653 EQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA 1712
+ P+A LSK + +EP+ +EA + + + + A + +
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGAL----THCKNKVS 172
Query: 1713 YKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVL 1772
+ ++ L S + A + D LG
Sbjct: 173 LQNLSM-------VLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL---DGRSWYILGNA 222
Query: 1773 F--------NLSDEYDKAVDCFRSALQV---RPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ +A+ + A +V + L EA+E +
Sbjct: 223 YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
A L P + + L T +E
Sbjct: 283 QAAALDPAWPEPQQREQQLLEFLSRLTSLLESK 315
Score = 72.3 bits (177), Expect = 6e-13
Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN-GNRPEEAVEAYHTALQLSPGFVR 1832
++ +E +K + L +++ G +L + EA A++L P V
Sbjct: 79 DVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE 138
Query: 1833 ARYNLGITCVHLGANTQAVEHFLTAL 1858
A LG G T A F AL
Sbjct: 139 AWNQLGEVYWKKGDVTSAHTCFSGAL 164
Score = 51.2 bits (122), Expect = 2e-06
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 4/105 (3%)
Query: 1618 QGDLPSAILYLEAAAK---QEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
A+ A K + N ++ L+ E +A+ S+ +++P E
Sbjct: 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE 293
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALP 1719
+ L L++ K K +P + + S A P
Sbjct: 294 PQQREQQLLEFLSRLTSLLES-KGKTKPKKLQSMLGSLRPAHLGP 337
Score = 43.1 bits (101), Expect = 0.001
Identities = 18/68 (26%), Positives = 28/68 (41%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
QQ LS Y A + S +PD+ L + Y +A++ F A + P + E
Sbjct: 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQR 297
Query: 772 LFSSLDFQ 779
L+F
Sbjct: 298 EQQLLEFL 305
Score = 42.7 bits (100), Expect = 0.001
Identities = 32/198 (16%), Positives = 62/198 (31%), Gaps = 27/198 (13%)
Query: 718 YLNAARQCPSQSI-----DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL--LV 770
Y A S+++ + N LG ++ + A CF AL + L L
Sbjct: 118 YSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLS 177
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRK----NRMVISNWIKYAQWEES 825
+ L + + +R + A + ++ + + Y ++
Sbjct: 178 MVLRQLQTDSGDEHSRHVMDSVRQAK----LAVQMDVLDGRSWYILGNAYLSLYFNTGQN 233
Query: 826 QKQVDRARSIYERALDVDHR---NITLW----LKYTELEMRNRQVNHARNLWDRAVTILP 878
K +A S Y +A VD + N L + E A + +A + P
Sbjct: 234 PKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEE----SYGEALEGFSQAAALDP 289
Query: 879 RANQFWYKYTYMEEMLEN 896
+ + + E L
Sbjct: 290 AWPEPQQREQQLLEFLSR 307
Score = 38.1 bits (88), Expect = 0.032
Identities = 24/202 (11%), Positives = 53/202 (26%), Gaps = 30/202 (14%)
Query: 701 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK-AVDCFRSAL 759
R +E ++ L + G N++ +Y A A+
Sbjct: 74 GRKQQDVQEEMEKTLQQMEEVLGSAQV---EAQALMLKGKALNVTPDYSPEAEVLLSKAV 130
Query: 760 QVRPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDN----IRKNRMVIS 814
++ P+ E L K D + A +N ++
Sbjct: 131 KLEPELVEAWNQLGEVY------WKKGDVTSAHTCF----SGALTHCKNKVSLQNLSMVL 180
Query: 815 NWIKYAQWEESQKQVDRARSIYERAL--DVDH------RNITLWLKYTELEMRNRQVNHA 866
++ +E + V + + A+ DV Y + A
Sbjct: 181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240
Query: 867 RNLWDRAVTILPRANQF---WY 885
+ + +A + +A+
Sbjct: 241 LSAYAQAEKVDRKASSNPDLHL 262
Score = 31.1 bits (70), Expect = 4.6
Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQA 1156
+R + A + + + W LG + G N QQA
Sbjct: 199 VRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTG----QNPKISQQA 240
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein
structure initiative, northeast structural genomics
consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Length = 272
Score = 98.5 bits (246), Expect = 2e-22
Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 40/249 (16%)
Query: 1638 NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDAL---D 1694
N +V L +N +AI +K + + + ++C+ A A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 1695 TLKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLN 1751
T K+ + + + L K + + Y
Sbjct: 62 TYFSKV----NATKAKSADFEYYGKIL-MKKGQD-----------------SLAIQQYQA 99
Query: 1752 AARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLA 1808
A D + +G F + A+ ++ D +++ LG +
Sbjct: 100 AV------DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYY 153
Query: 1809 NGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ---AVEHFLTALNQQAATH 1865
+A ++ L+L P +T+ A ++ + A
Sbjct: 154 YNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG 213
Query: 1866 DGLTPHGLE 1874
+E
Sbjct: 214 AKYKDELIE 222
Score = 89.3 bits (222), Expect = 2e-19
Identities = 27/272 (9%), Positives = 65/272 (23%), Gaps = 42/272 (15%)
Query: 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663
N+ F + + AI ++ ++ ++ + E + A +
Sbjct: 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61
Query: 1664 ---KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
++ + A+ + + + + Y
Sbjct: 62 TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV----DRDTTRLDMYGQIGSY 117
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
+ R + DP V LG + +
Sbjct: 118 F-YNKGN-----------------FPLAIQYMEKQIRPTTT---DPKVFYELGQAYYYNK 156
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLG---ASLANGNRPEEAVEAYHTALQLSPG----- 1829
EY KA F L+++P+ + A+ + A Y +++
Sbjct: 157 EYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY 216
Query: 1830 ---FVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A + +A + L
Sbjct: 217 KDELIEANEYIAYYYTINRDKVKADAAWKNIL 248
Score = 87.3 bits (217), Expect = 1e-18
Identities = 28/255 (10%), Positives = 57/255 (22%), Gaps = 48/255 (18%)
Query: 1611 LGQEKLRQGDLPSAILYLEA---AAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLS 1667
A +E + + G L + QD AI +
Sbjct: 43 RAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTR 1724
+ L+ I F N+ A+ ++ +I P + A
Sbjct: 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQI----RPTTTDPKVFYELGQAY-YYNKE 157
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLF---NLSDE 1778
+ S ++ + P++ + +
Sbjct: 158 Y-----------------VKADSSFVKVL------ELKPNIYIGYLWRARANAAQDPDTK 194
Query: 1779 YDKAVDCFRSALQVRPDDSRL--------WNRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
A + ++V + +A A+ L L P
Sbjct: 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN 254
Query: 1831 VRARYNLGITCVHLG 1845
+A L + H
Sbjct: 255 KKAIDGLKMKLEHHH 269
Score = 74.2 bits (183), Expect = 3e-14
Identities = 14/101 (13%), Positives = 38/101 (37%), Gaps = 3/101 (2%)
Query: 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAV--- 1817
++ DV+ ++ Y +A++ F + + ++NR + + A
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDI 60
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
E Y + + + G + G ++ A++ + A+
Sbjct: 61 ETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAV 101
Score = 43.0 bits (102), Expect = 6e-04
Identities = 23/117 (19%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
DP V LG + + EY KA F L+++P+ ++ + Q P K
Sbjct: 141 DPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA-- 198
Query: 791 LRDYQHRKRKAFE----DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD 843
Y+ K E + +I A + + +A + ++ L +D
Sbjct: 199 KPYYE----KLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251
Score = 38.8 bits (91), Expect = 0.012
Identities = 15/123 (12%), Positives = 41/123 (33%), Gaps = 14/123 (11%)
Query: 730 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPD 789
++ DV+ ++ Y +A++ F + + +
Sbjct: 1 MNDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCY------------Y 48
Query: 790 ELRDYQ--HRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNI 847
EL Y + + + + + +++ Y + + Q A Y+ A+D D +
Sbjct: 49 ELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRL 108
Query: 848 TLW 850
++
Sbjct: 109 DMY 111
Score = 38.8 bits (91), Expect = 0.013
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654
+ D A + +P N + L + L +
Sbjct: 227 IAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHHH 270
Score = 35.7 bits (83), Expect = 0.11
Identities = 5/47 (10%), Positives = 13/47 (27%), Gaps = 3/47 (6%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
D + +G F + A+ ++ ++ L
Sbjct: 102 DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148
Score = 32.6 bits (75), Expect = 1.0
Identities = 5/56 (8%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++++ + + + I+ + + ++ + KA +++ L + P +
Sbjct: 203 EKLIEVCAPGGAKYKDELIE--ANEYIAYYYTINRDKVKADAAWKNILALDPTNKK 256
>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA
complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A
Length = 499
Score = 102 bits (255), Expect = 2e-22
Identities = 30/250 (12%), Positives = 58/250 (23%), Gaps = 22/250 (8%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ K + + L A P S E + + L + +
Sbjct: 76 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGL 135
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
P+ + A+ + + L L P + A+ S
Sbjct: 136 TPEQVVAIASHDGGKQALETVQALLPVLCQAH----GLTPE----QVVAIASNGG----- 182
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P G + + +
Sbjct: 183 ------GKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNGGGKQALETVQRLLPVLCQ 233
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + P G + + A L+P V A + L
Sbjct: 234 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQ 293
Query: 1849 QAVEHFLTAL 1858
+ + A
Sbjct: 294 RLLPVLCQAH 303
Score = 100 bits (252), Expect = 6e-22
Identities = 31/250 (12%), Positives = 60/250 (24%), Gaps = 26/250 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + + L A P+ S G E + + L + + P
Sbjct: 146 HDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 205
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ + A+ + + L L + P Q A+ S
Sbjct: 206 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----------VVAIASNGG----- 250
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P + + +
Sbjct: 251 ------GKQALETVQRLLPVLCQAHGLTPQ---QVVAIASNSGGKQALETVQRLLPVLCQ 301
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + P G + + A L+P V A + L
Sbjct: 302 AHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQ 361
Query: 1849 QAVEHFLTAL 1858
+ + A
Sbjct: 362 RLLPVLCQAH 371
Score = 100 bits (252), Expect = 7e-22
Identities = 34/250 (13%), Positives = 62/250 (24%), Gaps = 26/250 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A P S E + + L + + P
Sbjct: 248 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTP 307
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ + A+ + + L L + P Q A+ S
Sbjct: 308 QQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQ----------VVAIASHDG----- 352
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P Q G + + +
Sbjct: 353 ------GKQALETVQRLLPVLCQAHGLTPEQV---VAIASNGGGKQALETVQRLLPVLCQ 403
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + P+ + + A L+P V A + G L +
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463
Query: 1849 QAVEHFLTAL 1858
+ AL
Sbjct: 464 AQLSRPDPAL 473
Score = 100 bits (251), Expect = 7e-22
Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 24/249 (9%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A P S G E + + L + + P
Sbjct: 214 NGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 273
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ + A+ + + AL+T++ + P +A L P ++ +A++
Sbjct: 274 QQVVAIA-------SNSGGKQALETVQRLL---------PVLCQAHGLTPQQVVAIASNG 317
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A P + + + A
Sbjct: 318 GG----KQALETVQRLLPVLCQAHGLTPQ---QVVAIASHDGGKQALETVQRLLPVLCQA 370
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ P+ G + + A L+P V A + L +
Sbjct: 371 HGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQR 430
Query: 1850 AVEHFLTAL 1858
+ A
Sbjct: 431 LLPVLCQAH 439
Score = 95.2 bits (237), Expect = 4e-20
Identities = 32/256 (12%), Positives = 58/256 (22%), Gaps = 27/256 (10%)
Query: 1608 AFALGQEKLRQGDLPSAILYLEAAAKQE-----PDNAEVWLSLGISLAENEQDPQAIAAL 1662
L K A+ A P+ S E + + L
Sbjct: 36 GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL 95
Query: 1663 SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKL 1722
+ + P+ + A+ + + L L P + A+ S
Sbjct: 96 CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAH----GLTPE----QVVAIASHD 147
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
+ E Q +L + A P G + +
Sbjct: 148 G-----------GKQALETVQALLPVLCQAHGLTPE---QVVAIASNGGGKQALETVQRL 193
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
+ A + P G + + A L+P V A + G
Sbjct: 194 LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQ 253
Query: 1843 HLGANTQAVEHFLTAL 1858
L + + A
Sbjct: 254 ALETVQRLLPVLCQAH 269
Score = 86.7 bits (215), Expect = 2e-17
Identities = 30/257 (11%), Positives = 62/257 (24%), Gaps = 22/257 (8%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+++ + + + L A + + G A A
Sbjct: 1 LEHHHHHHQWSGARALEALLTVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNAL 60
Query: 1662 LSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSK 1721
L++ P+ + A+ + + L L P+ + A+ S
Sbjct: 61 TGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAH----GLTPQ----QVVAIASH 112
Query: 1722 LTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDK 1781
+ E Q++L + A P Q +
Sbjct: 113 DG-----------GKQALETVQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQALETVQA 158
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
+ A + P+ G + + A L+P V A + G
Sbjct: 159 LLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK 218
Query: 1842 VHLGANTQAVEHFLTAL 1858
L + + A
Sbjct: 219 QALETVQRLLPVLCQAH 235
Score = 82.5 bits (204), Expect = 4e-16
Identities = 29/234 (12%), Positives = 54/234 (23%), Gaps = 33/234 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A P S G E + + L + + P
Sbjct: 282 NSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 341
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ + A+ + + L L + P Q A+ S
Sbjct: 342 QQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQ----------VVAIASNGG----- 386
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDC 1785
+ E Q++L + A + P+ + + +
Sbjct: 387 ------GKQALETVQRLLPVLCQAHG------LTPEQVVAIASHDGGKQALETVQRLLPV 434
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP-GFVRARYNLG 1838
A + P G + AL + A LG
Sbjct: 435 LCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLG 488
Score = 44.7 bits (106), Expect = 3e-04
Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 11/91 (12%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ K + + L A P S G E ++ L+
Sbjct: 416 ASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAA 475
Query: 1669 EPKNLEALMAISICFTNEACLHD--ALDTLK 1697
+ L+A+ ACL ALD +K
Sbjct: 476 LTND--HLVAL-------ACLGGRPALDAVK 497
Score = 33.6 bits (77), Expect = 0.83
Identities = 11/156 (7%), Positives = 33/156 (21%), Gaps = 15/156 (9%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
+ + + A + P + KQ +
Sbjct: 71 QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASH------DGGKQALETVQR 124
Query: 791 -LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL 849
L +A + + +++ + V + +A + +
Sbjct: 125 LLPVL----CQA----HGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVA 176
Query: 850 WLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
+ V + +A + P+
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIA 212
Score = 32.0 bits (73), Expect = 2.3
Identities = 14/165 (8%), Positives = 37/165 (22%), Gaps = 26/165 (15%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
+ P + + + A + P + Q +
Sbjct: 270 GLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGK------QAL 323
Query: 786 SDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844
L +A + + + + +++ + V R + +A +
Sbjct: 324 ETVQRLLPVL----CQAHG--LTPQQ--VVAIASHDGGKQALETVQRLLPVLCQAHGLTP 375
Query: 845 RNITLWLK----YTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
+ LE V + +A + P
Sbjct: 376 EQVVAIASNGGGKQALE----TVQRLLPVLCQAHGLTPEQVVAIA 416
Score = 31.3 bits (71), Expect = 3.7
Identities = 15/158 (9%), Positives = 41/158 (25%), Gaps = 26/158 (16%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
+ P + + + A + P+ + Q +
Sbjct: 338 GLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGK------QAL 391
Query: 786 SDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844
L +A + + I++ + +++ + V R + +A +
Sbjct: 392 ETVQRLLPVL----CQAHGLT-PEQVVAIAS---HDGGKQALETVQRLLPVLCQAHGLTP 443
Query: 845 RNITLW----LKYTELEMRNRQVNHARNLWDRAVTILP 878
+ + LE + + D A+ L
Sbjct: 444 QQVVAIASNGGGRPALE----SIVAQLSRPDPALAALT 477
Score = 29.7 bits (67), Expect = 10.0
Identities = 13/141 (9%), Positives = 33/141 (23%), Gaps = 18/141 (12%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q++L + A P Q + + A + P+ +
Sbjct: 122 VQRLLPVLCQAHGLTPEQ---VVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIA 178
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQV 829
Q + L +A + +++ + V
Sbjct: 179 SNGGGK------QALETVQRLLPVL----CQA----HGLTPQQVVAIASNGGGKQALETV 224
Query: 830 DRARSIYERALDVDHRNITLW 850
R + +A + + +
Sbjct: 225 QRLLPVLCQAHGLTPQQVVAI 245
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein
transport; 3.00A {Saccharomyces cerevisiae}
Length = 514
Score = 101 bits (254), Expect = 4e-22
Identities = 37/271 (13%), Positives = 79/271 (29%), Gaps = 41/271 (15%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
E A + G K + D A ++ A + P ++ + + +A+ +
Sbjct: 233 KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYIYMALIMADRNDSTEYYN 291
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADA 1717
K L ++ N A E +P Y A
Sbjct: 292 YFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK----ELDPENIFPYIQLACL 347
Query: 1718 LPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD 1777
+ + +L+ A R+ P P+V N + +
Sbjct: 348 A-YRENKF-----------------DDCETLFSEAKRKFPE---APEVPNFFAEILTDKN 386
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---------NRPEEAVEAYHTALQLSP 1828
++DKA+ + A+++ ++ + + EA A +L P
Sbjct: 387 DFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+A+ L + +A+ F + +
Sbjct: 447 RSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477
Score = 94.8 bits (236), Expect = 6e-20
Identities = 30/240 (12%), Positives = 64/240 (26%), Gaps = 37/240 (15%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
+ + D Y + A K + +N+ V+ G + QA K ++P
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLAN 1727
+N+ + ++ E D + P P A+ L +
Sbjct: 336 ENIFPYIQLACLAYRENKFDDCETLFSEAK----RKFPEAPEVPNFFAEIL-TDKNDF-- 388
Query: 1728 HTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSD---------E 1778
+ L Y A + G+ L +
Sbjct: 389 ---------------DKALKQYDLAIELENK---LDGIYVGIAPLVGKATLLTRNPTVEN 430
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
+ +A + A ++ P + L +EA+ + + L+ +
Sbjct: 431 FIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT 490
Score = 94.0 bits (234), Expect = 1e-19
Identities = 32/295 (10%), Positives = 81/295 (27%), Gaps = 39/295 (13%)
Query: 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD 1637
F D + + E Q + + + + + +
Sbjct: 130 FGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKE 189
Query: 1638 NAEVWLSLGISLAEN------------EQDPQAIAALSKCLSIEPKNLEALMAISICFTN 1685
+L E+ + + ++ ++ K +L I
Sbjct: 190 LMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL 249
Query: 1686 EACLHDALDTLKDKIRPGQESNPRPSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQ 1743
+ A + +K I E PR ++Y A + +
Sbjct: 250 KNDPLGAHEDIKKAI----ELFPRVNSYIYMALIMADR------------------NDST 287
Query: 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803
+ + + A + + + V G + + YD+A F A ++ P++ + +L
Sbjct: 288 EYYNYFDKALKLDSN---NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQL 344
Query: 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
N+ ++ + A + P +A++ + A+
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAI 399
Score = 91.7 bits (228), Expect = 6e-19
Identities = 27/287 (9%), Positives = 72/287 (25%), Gaps = 39/287 (13%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAA-KQEPDNA--EVWLSLGISLAENEQDPQAIAALSKCLS 1667
G A+ L + + ++A E L ++ + + + +
Sbjct: 79 RASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATA 138
Query: 1668 IEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD-ALPSKLTRLA 1726
+ ++ + +P + +AD L + L+ L
Sbjct: 139 TPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLY 198
Query: 1727 NHTLTFRSPLSSR-----EIHQQVLSLYLNAARQCPSQ---------------------- 1759
+ + ++ L +
Sbjct: 199 KRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258
Query: 1760 ------SIDPDVQ--NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811
+ P V + ++ ++ + + F AL++ ++S ++ G
Sbjct: 259 DIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQ 318
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
++A + + A +L P + L F A
Sbjct: 319 NYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAK 365
Score = 90.2 bits (224), Expect = 2e-18
Identities = 29/253 (11%), Positives = 64/253 (25%), Gaps = 38/253 (15%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+ K + A GI A + K + + P + + +
Sbjct: 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP-RVNSYI 274
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRS 1734
+++ + + + + + + S Y + L
Sbjct: 275 YMALIMADRNDSTEYYNYFDKAL----KLDSNNSSVYYHRGQMN-FILQNY--------- 320
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
Q + A P + L L +++D F A + P
Sbjct: 321 --------DQAGKDFDKAKELDPE---NIFPYIQLACLAYRENKFDDCETLFSEAKRKFP 369
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ----- 1849
+ + N L + N ++A++ Y A++L + T+
Sbjct: 370 EAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429
Query: 1850 ----AVEHFLTAL 1858
A A
Sbjct: 430 NFIEATNLLEKAS 442
Score = 89.4 bits (222), Expect = 3e-18
Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 9/255 (3%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSK-CLSIE 1669
L + GDL + A + +PD ++V L + + A+ LS L+ +
Sbjct: 45 LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104
Query: 1670 PKN--LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSA---YKADALPSKLTR 1724
+ +E ++ ++ + L + + E + +P+ K + LPS T
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV-TS 163
Query: 1725 LANHTLTFRSPLSSREIHQQV-LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783
+A+ F+ L+ + L + + +++ +
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
D +++ + G N P A E A++L P + + +
Sbjct: 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRV-NSYIYMALIMAD 282
Query: 1844 LGANTQAVEHFLTAL 1858
+T+ +F AL
Sbjct: 283 RNDSTEYYNYFDKAL 297
Score = 76.3 bits (188), Expect = 5e-14
Identities = 25/220 (11%), Positives = 60/220 (27%), Gaps = 52/220 (23%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+ N F L R+ A ++ P+ EV L + +A+
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720
+ +E K + I+ +A L T+++
Sbjct: 394 QYDLAIELENKLDGIYVGIAPLV-GKATLLTRNPTVEN---------------------- 430
Query: 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYD 1780
+ +L A++ P + GL + ++ D
Sbjct: 431 ---------------------FIEATNLLEKASKLDPR---SEQAKIGLAQMKLQQEDID 466
Query: 1781 KAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820
+A+ F + + + + A + ++ + +
Sbjct: 467 EAITLFEESADLARTMEEKLQAI--TFAEAAKVQQRIRSD 504
Score = 60.9 bits (148), Expect = 3e-09
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 9/124 (7%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
+ + Y A DP + L + + K V+ AL+++PD S++
Sbjct: 22 YDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGF----VRARYNLGITCVHLGANTQAVEHFLTA 1857
R ++ + +A+ + L L+ F + + + + TA
Sbjct: 78 RRASANEGLGKFADAMFDL-SVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA 136
Query: 1858 LNQQ 1861
Sbjct: 137 TATP 140
Score = 48.6 bits (116), Expect = 2e-05
Identities = 27/156 (17%), Positives = 54/156 (34%), Gaps = 15/156 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+L+ A R+ P P+V N + +++DKA+ + A+++ + V
Sbjct: 354 FDDCETLFSEAKRKFPE---APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV 410
Query: 771 ---YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ 826
L + + E + KA + + I AQ + Q
Sbjct: 411 GIAPLVGKATLLTRNPTVENFIEATNLLE----KA----SKLDPRSEQAKIGLAQMKLQQ 462
Query: 827 KQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQ 862
+ +D A +++E + D+ T E Q
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQ 498
Score = 47.4 bits (113), Expect = 4e-05
Identities = 25/172 (14%), Positives = 59/172 (34%), Gaps = 19/172 (11%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
+DP+ L L +++D F A + P+ E+ + L
Sbjct: 332 ELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEIL------TDK 385
Query: 786 SDPDE-LRDYQHRKRKAFE---DNIR--KNRMVISNWIKYAQWEESQKQVDRARSIYERA 839
+D D+ L+ Y A E + + + A ++ E+A
Sbjct: 386 NDFDKALKQYD----LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKA 441
Query: 840 LDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYME 891
+D R+ + +++++ ++ A L++ + + + T+ E
Sbjct: 442 SKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAE 493
Score = 44.3 bits (105), Expect = 4e-04
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 1/67 (1%)
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852
+ + G + ++A++ Y+ AL+L V NL V +G + VE
Sbjct: 2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVE 60
Query: 1853 HFLTALN 1859
AL
Sbjct: 61 MSTKALE 67
Score = 40.5 bits (95), Expect = 0.005
Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 20/184 (10%)
Query: 709 EIHQQVLSLYLNAARQCPS-QSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
E + L+ + + + G+ L ++ A + + A+++ P
Sbjct: 210 ESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR 269
Query: 765 FTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWE 823
+Y+ + +D E + KA ++ + S + Q
Sbjct: 270 V-NSYIYMALIM------ADRNDSTEYYNYFD----KA----LKLDSNNSSVYYHRGQMN 314
Query: 824 ESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF 883
+ D+A +++A ++D NI +++ L R + + L+ A P A +
Sbjct: 315 FILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEV 374
Query: 884 WYKY 887
+
Sbjct: 375 PNFF 378
Score = 37.4 bits (87), Expect = 0.052
Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ-----D 1655
+ + A L Q KL+Q D+ AI E +A E ++ + A Q D
Sbjct: 445 DPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQRIRSD 504
Query: 1656 PQAIAALSK 1664
P + +
Sbjct: 505 PVLAKKIQE 513
Score = 34.7 bits (80), Expect = 0.37
Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 16/143 (11%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ + Y A DP + L + + K V+ AL+++PD++++L+
Sbjct: 22 YDDAIKYYNWALELKE----DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLL 77
Query: 771 YLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQV 829
S+ + + + + D N N I ++ +++ ++
Sbjct: 78 RRASAN------EGLGKFADAMFDL-----SVLSLNGDFNDASIEPMLERNLNKQAMSKL 126
Query: 830 DRARSIYERALDVDHRNITLWLK 852
+ A T K
Sbjct: 127 KEKFGDIDTATATPTELSTQPAK 149
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown
function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Length = 275
Score = 96.6 bits (241), Expect = 8e-22
Identities = 40/268 (14%), Positives = 71/268 (26%), Gaps = 29/268 (10%)
Query: 1598 EDNPMQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQ 1654
+ ++ A G G A A PD EV+ LGI L +
Sbjct: 33 ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN 92
Query: 1655 DPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714
A A L ++P A + I A D L + Y+
Sbjct: 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL-------------AFYQ 139
Query: 1715 ADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSID-PDVQNGLGVLF 1773
D P+ R L + + +Q + + + V+ LG +
Sbjct: 140 DD--PNDPFRSLWLYLAEQ-----KLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNIS 192
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
++ + S LG + + A + A+ +
Sbjct: 193 EQ-TLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE 251
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ LG + + +QQ
Sbjct: 252 HRYALLELSLLGQDQDDLAES----DQQ 275
Score = 72.7 bits (179), Expect = 1e-13
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 4/94 (4%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVR----PDDSRLWNRLGASLANGNRPEEAVEAYHTAL 1824
L V + + + + L R + ++L G + A + AL
Sbjct: 11 LAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQAL 70
Query: 1825 QLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ P LGI G A E F + L
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL 104
Score = 72.3 bits (178), Expect = 1e-13
Identities = 33/268 (12%), Positives = 63/268 (23%), Gaps = 66/268 (24%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+ + ++E A L ++ L L + A + + A++ G+
Sbjct: 1 SNTSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRA 60
Query: 1657 QAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD 1716
A S+ L+I P E + I T A + A+
Sbjct: 61 LARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE-----------------AFD-- 101
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLF 1773
VL L DP G+
Sbjct: 102 ---------------------------SVLEL-------------DPTYNYAHLNRGIAL 121
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA---VEAYHTALQLSPGF 1830
A D + Q P+D L + + + + + + + G+
Sbjct: 122 YYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGW 181
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ LG +
Sbjct: 182 NIVEFYLG-NISEQTLMERLKADATDNT 208
Score = 40.4 bits (95), Expect = 0.004
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+I PD V N LG+ + +D A + F S L++ P +
Sbjct: 71 AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY 112
Score = 38.4 bits (90), Expect = 0.015
Identities = 15/125 (12%), Positives = 32/125 (25%), Gaps = 14/125 (11%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
+DP G+ A D + Q P+ ++L+ + KQ
Sbjct: 105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 164
Query: 786 SDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHR 845
+ FE + ++ E Q ++R ++ +
Sbjct: 165 EVLK----------QHFEKSDKEQWGWNIVEFYLGNISE-QTLMERLKADATDNTSLAEH 213
Query: 846 NITLW 850
Sbjct: 214 LSETN 218
Score = 34.2 bits (79), Expect = 0.34
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ GVL++ A + F AL +RPD E
Sbjct: 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE 78
Score = 33.4 bits (77), Expect = 0.53
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 711 HQQVLSLYLNAARQCPSQSID-PDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELL 769
+Q + + + V+ LG + ++ + +E
Sbjct: 160 EKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQ-TLMERLKADATDNTSLAEHLSETN 218
Query: 770 VYL 772
YL
Sbjct: 219 FYL 221
Score = 33.1 bits (76), Expect = 0.87
Identities = 7/42 (16%), Positives = 12/42 (28%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
S+ LG + + D A F+ A+
Sbjct: 209 SLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT
protein-protein interactions, protein binding; 2.00A
{Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A
3asg_A 3ash_A 3as8_A 3asf_A
Length = 186
Score = 92.9 bits (232), Expect = 2e-21
Identities = 38/227 (16%), Positives = 75/227 (33%), Gaps = 63/227 (27%)
Query: 1636 PDNAEV-WLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALD 1694
D +V + GIS A+ + QA+ L + + +++ + + I + + +
Sbjct: 4 DDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTE 63
Query: 1695 TLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAAR 1754
+ + L+
Sbjct: 64 -----------------LLE-----------------------------RSLAD------ 71
Query: 1755 QCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGN 1811
PD V LG+ + +YD AV + P + + RLG +L N
Sbjct: 72 -------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLG 124
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
R +EA++++ AL L P + + + +G + +A+ HF A
Sbjct: 125 RFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKAN 171
Score = 61.7 bits (151), Expect = 1e-10
Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 34/210 (16%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
N + G + G A++ LE + + +V L LGI+ + +
Sbjct: 3 NDDIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGT 62
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAY--KAD 1716
L + L+ P N++ + + + A+ L E+NP +
Sbjct: 63 ELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVA----EANPINFNVRFRLGV 118
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNGLGVLF 1773
AL L R + + + A + P+ V + +
Sbjct: 119 AL-DNLGRF-----------------DEAIDSFKIAL------GLRPNEGKVHRAIAFSY 154
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803
+++A+ F+ A ++ S +
Sbjct: 155 EQMGRHEEALPHFKKANELDEGASVELALV 184
Score = 39.0 bits (92), Expect = 0.006
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+P V+ LGV + +D+A+D F+ AL +RP+ +
Sbjct: 104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK 145
Score = 37.8 bits (89), Expect = 0.015
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
D V LG+ + + D+ + +L PD +
Sbjct: 36 DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK 77
Score = 37.8 bits (89), Expect = 0.015
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ PD V LG+ + +YD AV + P
Sbjct: 70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN 111
Score = 37.0 bits (87), Expect = 0.024
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 3/44 (6%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELL 769
+ P+ V + + +++A+ F+ A ++ + L
Sbjct: 138 GLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181
Score = 33.6 bits (78), Expect = 0.31
Identities = 4/32 (12%), Positives = 8/32 (25%)
Query: 736 NGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
G+ + Y +AV +
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFDVD 43
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Length = 472
Score = 94.2 bits (234), Expect = 7e-20
Identities = 47/294 (15%), Positives = 81/294 (27%), Gaps = 52/294 (17%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEP--------DNAEVWLSLGISL--AENEQDPQAIA 1660
G L +Y++ ++ E+ G + Q+ +A
Sbjct: 100 YAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKV 159
Query: 1661 ALSKCLSIEPKNLEAL--MAISICFTNEACLHD-ALDTLKDKIRPGQESNPR-PSAYKAD 1716
K L +PKN E +AI+ + A+D L+ I NP
Sbjct: 160 CFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAI----RLNPDNQYLK--- 212
Query: 1717 ALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLS 1776
L E + L A + P DV +
Sbjct: 213 ---------VLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRK 260
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLG----------------ASLANGNRPE---EAV 1817
DE DKA++ + AL+ P+++ L ++G E AV
Sbjct: 261 DEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871
A + + R L +A +F +++ H
Sbjct: 321 AHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLH 374
Score = 90.0 bits (223), Expect = 2e-18
Identities = 43/295 (14%), Positives = 93/295 (31%), Gaps = 54/295 (18%)
Query: 1617 RQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE----NEQDPQAIAALSKCLSIEPKN 1672
+AI L A + PDN + + L + L + E++ + + + L P
Sbjct: 187 NWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR-PSAYK--ADALPSKLTRLANHT 1729
+ L + + + + A++ LK + E P + +K+ ++ N
Sbjct: 247 TDVLRSAAKFYRRKDEPDKAIELLKKAL----EYIPNNAYLHCQIGCCYRAKVFQVMN-- 300
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCP-SQSIDPD---VQNGLGVLFNLSDEYDKAVDC 1785
+ +++L L +A + + + V + L L L+D+Y++A
Sbjct: 301 ----LRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 1786 FRSALQVRPDDS---RLWNRLGASLAN-GNRPEEAVEAYHTALQLS-------------- 1827
F+ L R G ++A+ + ++++
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQ 416
Query: 1828 ----------PGFVRARYNLGITCVHLGANTQAVEHFLTAL-----NQQAATHDG 1867
A + L QA E L A++ +G
Sbjct: 417 KIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471
Score = 86.5 bits (214), Expect = 2e-17
Identities = 42/262 (16%), Positives = 83/262 (31%), Gaps = 21/262 (8%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
L + + D + Y + A + L Q+ A+ L K +
Sbjct: 23 NLMEGENSLDDFEDKVFY-RTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELI 81
Query: 1670 PKN--LEALMAISICFTNEACLHDALDTLKD---KIRPGQESNPRPSAYKADALPSKLTR 1724
+ +A + + + N A ++ + L D + + + S+ P
Sbjct: 82 QQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCE 141
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLFNLSD--EYDK 1781
L +++ + A + P +P+ +GL + L +
Sbjct: 142 EGWTRLKC-----GGNQNERAKVCFEKALEKKPK---NPEFTSGLAIASYRLDNWPPSQN 193
Query: 1782 AVDCFRSALQVRPDDSRLWNRLGASLAN----GNRPEEAVEAYHTALQLSPGFVRARYNL 1837
A+D R A+++ PD+ L L L G E + AL+ +PG +
Sbjct: 194 AIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSA 253
Query: 1838 GITCVHLGANTQAVEHFLTALN 1859
+A+E AL
Sbjct: 254 AKFYRRKDEPDKAIELLKKALE 275
Score = 73.0 bits (179), Expect = 4e-13
Identities = 30/247 (12%), Positives = 59/247 (23%), Gaps = 47/247 (19%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE------------------- 1651
+ R+ + AI L+ A + P+NA + +G
Sbjct: 253 AAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 1652 NEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS 1711
E A+A L K ++ +A + + +
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQL 372
Query: 1712 AYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV 1771
+ R N ++ + IH ++ I+ + +
Sbjct: 373 LH---------LRYGN-FQLYQMKCEDKAIHH-----FIEGV------KINQKSREKEKM 411
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
L L DS + L + ++A E L+
Sbjct: 412 KDKLQKIAKMR-------LSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIP 464
Query: 1832 RARYNLG 1838
A G
Sbjct: 465 SASSWNG 471
Score = 62.6 bits (152), Expect = 6e-10
Identities = 30/209 (14%), Positives = 62/209 (29%), Gaps = 41/209 (19%)
Query: 1602 MQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAA 1661
+ N G+ KL + + A+ +L+ A + + V L A +Q +A
Sbjct: 298 VMNLRENGMYGKRKLLE-LIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356
Query: 1662 LSKCLSIEPKNLEALMAI----SICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKA 1715
K S E + + + C A+ + KI + +
Sbjct: 357 FQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--------NQKSREK 408
Query: 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNL 1775
+ + KL ++A L+ D + + L L L
Sbjct: 409 EKMKDKLQKIAKMRLSKNGA--------------------------DSEALHVLAFLQEL 442
Query: 1776 SDEYDKAVDCFRSALQVRPDDSRLWNRLG 1804
+++ +A + L+ + G
Sbjct: 443 NEKMQQADEDSERGLESGSLIPSASSWNG 471
Score = 51.1 bits (122), Expect = 3e-06
Identities = 24/213 (11%), Positives = 60/213 (28%), Gaps = 13/213 (6%)
Query: 694 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 753
L E + L A + P DV + DE DKA++
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG---VTDVLRSAAKFYRRKDEPDKAIE 268
Query: 754 CFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKR------KAFEDNIR 807
+ AL+ P+ L + + + + + + +
Sbjct: 269 LLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328
Query: 808 KNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTE----LEMRNRQV 863
N + A Q + A +++ + + L + + +
Sbjct: 329 ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCE 388
Query: 864 NHARNLWDRAVTILPRANQFWYKYTYMEEMLEN 896
+ A + + V I ++ + ++++ +
Sbjct: 389 DKAIHHFIEGVKINQKSREKEKMKDKLQKIAKM 421
Score = 49.6 bits (118), Expect = 9e-06
Identities = 28/187 (14%), Positives = 66/187 (35%), Gaps = 10/187 (5%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
+V + + +S + D + G L ++ ++A CF AL+ +P E
Sbjct: 118 DKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSG 177
Query: 772 LFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNW-IKYAQWEESQKQVD 830
L + ++ + ++ R+A N N+ + +K + E ++
Sbjct: 178 LAIAS------YRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEG 230
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKY--T 888
+ E AL+ + + R + + A L +A+ +P +
Sbjct: 231 EGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC 290
Query: 889 YMEEMLE 895
Y ++ +
Sbjct: 291 YRAKVFQ 297
Score = 37.2 bits (86), Expect = 0.054
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYL 772
D + + L L L+++ +A + L+ +
Sbjct: 429 DSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN 470
Score = 32.6 bits (74), Expect = 1.6
Identities = 19/124 (15%), Positives = 45/124 (36%), Gaps = 6/124 (4%)
Query: 736 NGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSL---DFQPPKQKISDPDELR 792
N L L +L + + A++C R A ++ + S + ++ + +++
Sbjct: 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQ 114
Query: 793 DY---QHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL 849
Y + F R + + + + Q +RA+ +E+AL+ +N
Sbjct: 115 IYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEF 174
Query: 850 WLKY 853
Sbjct: 175 TSGL 178
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat,
CLP1, PCF11, structural protein; 2.30A {Kluyveromyces
lactis} PDB: 4e85_A 4eba_A
Length = 679
Score = 95.1 bits (235), Expect = 1e-19
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 6/123 (4%)
Query: 783 QKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
P + D I + I ++K + S KQ + +++ D
Sbjct: 36 STSLRPTSRVRDESDVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR 95
Query: 843 DHRNITLWLKYTELE---MRNRQVNHARNLWDRAVTILPRAN--QFWYKY-TYMEEMLEN 896
+W LE M + R ++ N W Y TY+ + +
Sbjct: 96 FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDI 155
Query: 897 VAG 899
+ G
Sbjct: 156 ITG 158
Score = 55.8 bits (133), Expect = 1e-07
Identities = 21/166 (12%), Positives = 52/166 (31%), Gaps = 7/166 (4%)
Query: 748 YDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRK--RKAFEDN 805
+D L + + L + + ++ Q RK F
Sbjct: 401 ILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460
Query: 806 IRKNRMV-ISNWIKYAQWE-ESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQV 863
R ++V +++ A E K A + E L + KY + + +
Sbjct: 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE 520
Query: 864 NHARNLWDRAVTILP---RANQFWYKYTYMEEMLENVAGKLFVFHR 906
+ ++L++ ++ + + K + E + ++ + R
Sbjct: 521 SQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKR 566
Score = 55.4 bits (132), Expect = 2e-07
Identities = 11/128 (8%), Positives = 28/128 (21%), Gaps = 8/128 (6%)
Query: 787 DPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQ-------VDRARSIYERA 839
+ + + W+++ +WE K R +Y +A
Sbjct: 276 KRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQA 335
Query: 840 LDVDHRNITLWLKYTE-LEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVA 898
+W +N +P + + + E+ +
Sbjct: 336 AQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIP 395
Query: 899 GKLFVFHR 906
Sbjct: 396 EIETTILS 403
Score = 54.3 bits (129), Expect = 4e-07
Identities = 19/105 (18%), Positives = 36/105 (34%), Gaps = 6/105 (5%)
Query: 796 HRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV---DHRNITLWLK 852
K E ++ KY + + + +S++E ++D H ++ K
Sbjct: 487 KTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQK 546
Query: 853 YTELEMRNRQVNHARNLWDRAVTILPRAN---QFWYKYTYMEEML 894
E + +N R L R P N +F KY ++
Sbjct: 547 VIFFESKVGSLNSVRTLEKRFFEKFPEVNKLEEFTNKYKVLDVNY 591
Score = 52.7 bits (125), Expect = 9e-07
Identities = 14/125 (11%), Positives = 30/125 (24%), Gaps = 4/125 (3%)
Query: 785 ISDPDELRDYQHRKR--KAFEDNIRKNRMVISNWIKYAQWEESQ-KQVDRARSIYERALD 841
+ EL D H+ R + + W A ++ + +
Sbjct: 313 SDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQ 372
Query: 842 VDHRNITLWLKYTELEMRNRQVNHARNLWDRAV-TILPRANQFWYKYTYMEEMLENVAGK 900
+ L +E N ++ + I E + + K
Sbjct: 373 CIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSK 432
Query: 901 LFVFH 905
L +
Sbjct: 433 LTYVY 437
Score = 45.0 bits (105), Expect = 2e-04
Identities = 21/144 (14%), Positives = 51/144 (35%), Gaps = 19/144 (13%)
Query: 745 SDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED 804
+ L +L ++L ++K + ++ +AF+
Sbjct: 116 ELDAAVIEPVLARCLSKELGNNDLSLWL---SYITYVRKKNDIITGGEEARNIVIQAFQV 172
Query: 805 NIRK--------------NRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNI-TL 849
+ K + +W ++EE Q++V R +Y+ L + ++
Sbjct: 173 VVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEE-QQRVQYIRKLYKTLLCQPMDCLESM 231
Query: 850 WLKYTELEMRNRQVNHARNLWDRA 873
W +YT+ E Q+ R++ + +
Sbjct: 232 WQRYTQWEQDVNQLTARRHIGELS 255
Score = 41.2 bits (95), Expect = 0.003
Identities = 18/183 (9%), Positives = 48/183 (26%), Gaps = 22/183 (12%)
Query: 747 EYDKAVDCFRSALQVRPDFTELL--VYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED 804
+++ L D E + Y D + + Y + + +
Sbjct: 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQD- 267
Query: 805 NIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQ-- 862
N K + S + + D + + +WL++ E N+
Sbjct: 268 --------WLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLEL 319
Query: 863 -----VNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLFVFHRDSI----SQVT 913
++ +A + A + W+ + + + + + +
Sbjct: 320 SDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV 379
Query: 914 LWL 916
L
Sbjct: 380 LAF 382
Score = 36.6 bits (83), Expect = 0.10
Identities = 14/102 (13%), Positives = 36/102 (35%), Gaps = 12/102 (11%)
Query: 742 FNLSDEYDKAVDCFRSALQVRPDFTEL-LVYLFSSLDFQPPKQKISDPDELRDYQHRKRK 800
+++S + A L+ E YL DF +++ +++
Sbjct: 480 YHISKDTKTACKVLELGLKYFATDGEYINKYL----DFL---IYVNEESQVKSLFES--- 529
Query: 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
D I + ++ + K +E ++ R++ +R +
Sbjct: 530 -SIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK 570
Score = 32.3 bits (72), Expect = 2.2
Identities = 26/220 (11%), Positives = 67/220 (30%), Gaps = 6/220 (2%)
Query: 1614 EKLRQGDLPSAILYL-EAAAKQEPDNAEVWLSLGISLAENEQDPQ-AIAALSKCLSIEPK 1671
+L + + Y+ AA+ E+W ++ E D L P
Sbjct: 317 LELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPN 376
Query: 1672 NLEALMAISICF---TNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ ++S + T + + + D+I + A+ ++L
Sbjct: 377 SAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYV 436
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ + + + ++ R + D ++N + +++S + A
Sbjct: 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAY-IEYHISKDTKTACKVLEL 495
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
L+ D N+ L N + + +++
Sbjct: 496 GLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin,
type III secretion, protein binding; 1.85A {Pseudomonas
aeruginosa} PDB: 2xcc_A
Length = 142
Score = 82.9 bits (205), Expect = 2e-18
Identities = 19/98 (19%), Positives = 38/98 (38%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ LG + ++D A F++ + D+R + LGA + E+A+++Y
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ R ++ + LG A F +A
Sbjct: 77 YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARA 114
Score = 67.1 bits (164), Expect = 5e-13
Identities = 10/88 (11%), Positives = 24/88 (27%), Gaps = 3/88 (3%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
++ D GLG Y++A+ + + ++ R
Sbjct: 34 WDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPG 1829
+ A +++A L+
Sbjct: 91 HAAECHLQLGDLDGAESGFYSARALAAA 118
Score = 61.7 bits (150), Expect = 4e-11
Identities = 16/89 (17%), Positives = 28/89 (31%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ALG + + G A +A + +A +L LG QA+ + S +
Sbjct: 22 YALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALM 81
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLK 1697
+ + C L A
Sbjct: 82 DINEPRFPFHAAECHLQLGDLDGAESGFY 110
Score = 56.7 bits (137), Expect = 2e-09
Identities = 12/73 (16%), Positives = 22/73 (30%)
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
+ D LG + + ++A + + L R LG LG
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 1846 ANTQAVEHFLTAL 1858
QA++ +
Sbjct: 67 LYEQALQSYSYGA 79
Score = 49.7 bits (119), Expect = 5e-07
Identities = 6/73 (8%), Positives = 16/73 (21%), Gaps = 1/73 (1%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+ + LG + G A+ A + + + A
Sbjct: 48 DH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAE 106
Query: 1660 AALSKCLSIEPKN 1672
+ ++
Sbjct: 107 SGFYSARALAAAQ 119
Score = 47.4 bits (113), Expect = 3e-06
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 5/93 (5%)
Query: 1628 LEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687
L D E +LG + + + A ++ + + + C +
Sbjct: 7 LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66
Query: 1688 CLHDALDTLKD--KIRPGQESNPRPSAYKADAL 1718
AL + + PR + A+
Sbjct: 67 LYEQALQSYSYGALMDIN---EPRFPFHAAECH 96
Score = 38.6 bits (90), Expect = 0.004
Identities = 6/62 (9%), Positives = 15/62 (24%), Gaps = 3/62 (4%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ D GLG Y++A+ + + +
Sbjct: 34 WDDAQKIFQALCMLDHY---DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPF 90
Query: 771 YL 772
+
Sbjct: 91 HA 92
Score = 35.1 bits (81), Expect = 0.068
Identities = 8/70 (11%), Positives = 20/70 (28%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVT 875
+ + D A+ I++ +DH + +L A +
Sbjct: 21 LYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGAL 80
Query: 876 ILPRANQFWY 885
+ +F +
Sbjct: 81 MDINEPRFPF 90
Score = 33.6 bits (77), Expect = 0.25
Identities = 10/57 (17%), Positives = 16/57 (28%), Gaps = 3/57 (5%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++Q L Y A + +P + D A F SA +
Sbjct: 68 YEQALQSYSYGALMDIN---EPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPA 121
Score = 33.2 bits (76), Expect = 0.30
Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 15/117 (12%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
+ LG + ++D A F++ + + L + Q + ++
Sbjct: 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACR------QSLGLYEQ 70
Query: 791 -LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRN 846
L+ Y + N +D A S + A +
Sbjct: 71 ALQSYS----YGAL--MDINEPRFPFHAAECH--LQLGDLDGAESGFYSARALAAAQ 119
Score = 30.5 bits (69), Expect = 2.5
Identities = 8/40 (20%), Positives = 10/40 (25%)
Query: 1819 AYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
LS + Y LG G A + F
Sbjct: 6 TLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALC 45
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR),
beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos
taurus}
Length = 291
Score = 86.7 bits (214), Expect = 2e-18
Identities = 44/276 (15%), Positives = 74/276 (26%), Gaps = 34/276 (12%)
Query: 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ 1657
+P ++ L + L Q + ++ ++ + LA + +
Sbjct: 27 PSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSS---APELQAVRMFAEYLASHSRRDA 83
Query: 1658 AIAALSKCLSI--EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715
+A L + +S + N L+ + + + AL TL Q + A
Sbjct: 84 IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH------QGDSLECMAMTV 137
Query: 1716 DALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGV--LF 1773
L KL RL Q Q L
Sbjct: 138 QIL-LKLDRL-----------------DLARKELKKMQDQDED---ATLTQLATAWVSLA 176
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
++ A F+ L N A R E A AL G
Sbjct: 177 AGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236
Query: 1834 RYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869
NL + HLG + +L+ L +H +
Sbjct: 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK 272
Score = 54.7 bits (131), Expect = 1e-07
Identities = 16/120 (13%), Positives = 35/120 (29%), Gaps = 2/120 (1%)
Query: 1596 FAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD 1655
ED + A A L A + A + + +
Sbjct: 159 QDEDATLTQ--LATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRW 216
Query: 1656 PQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKA 1715
A L + L + + E L+ + + + + + +++ S+P Y+A
Sbjct: 217 EAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEYRA 276
Score = 39.7 bits (92), Expect = 0.007
Identities = 11/61 (18%), Positives = 19/61 (31%), Gaps = 3/61 (4%)
Query: 712 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
Q ++ A +C + NG ++ A + AL E L+
Sbjct: 183 QDAYYIFQEMADKCSP---TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239
Query: 772 L 772
L
Sbjct: 240 L 240
Score = 38.2 bits (88), Expect = 0.018
Identities = 10/73 (13%), Positives = 22/73 (30%)
Query: 1594 YTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENE 1653
+ D + QG +A L+ A ++ + E ++L +
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG 248
Query: 1654 QDPQAIAALSKCL 1666
+ P+ L
Sbjct: 249 KPPEVTNRYLSQL 261
Score = 31.6 bits (71), Expect = 2.3
Identities = 23/182 (12%), Positives = 47/182 (25%), Gaps = 13/182 (7%)
Query: 720 NAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQ 779
+AA + Q + + D D A + D T +
Sbjct: 118 DAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAA 177
Query: 780 PPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERA 839
Q F++ K + A +Q + + A + + A
Sbjct: 178 ----------GGEKLQ-DAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226
Query: 840 LDVDHRNI-TLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVA 898
LD D + TL + + + ++ F +Y E + +
Sbjct: 227 LDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR-SHPFIKEYRAKENDFDRLV 285
Query: 899 GK 900
+
Sbjct: 286 LQ 287
>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae}
Length = 1047
Score = 90.5 bits (224), Expect = 4e-18
Identities = 35/259 (13%), Positives = 69/259 (26%), Gaps = 27/259 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A PD S G E + + L + + P
Sbjct: 503 NIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP 562
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + AL+T++ + P +A L ++ +A++
Sbjct: 563 DQVVAI-------ASNGGGKQALETVQRLL---------PVLCQAHGLTQVQVVAIASNI 606
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A P+Q + + + A
Sbjct: 607 GG----KQALETVQRLLPVLCQAHGLTPAQ---VVAIASHDGGKQALETVQRLLPVLCQA 659
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ PD G + + A L+ V A + L +
Sbjct: 660 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQR 719
Query: 1850 AVEHFLTALN---QQAATH 1865
+ A Q
Sbjct: 720 LLPVLCQAHGLTPDQVVAI 738
Score = 90.1 bits (223), Expect = 6e-18
Identities = 33/250 (13%), Positives = 59/250 (23%), Gaps = 27/250 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A P S E + + L + + P
Sbjct: 198 NNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPP 257
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ A+ + + L L + P Q A+ S
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ----------VVAIASHGG----- 302
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
+ E Q++L + A P Q + + +
Sbjct: 303 ------GKQALETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQALETVQRLLPVLCQ 353
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
A + PD G + + A L+P V A + G L
Sbjct: 354 AHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGK-QALETVQ 412
Query: 1849 QAVEHFLTAL 1858
+ + A
Sbjct: 413 RLLPVLCQAH 422
Score = 83.9 bits (207), Expect = 4e-16
Identities = 34/270 (12%), Positives = 65/270 (24%), Gaps = 22/270 (8%)
Query: 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663
++ A A K + + L A PD S E + + L
Sbjct: 394 DQVVAIASNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 453
Query: 1664 KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLT 1723
+ + P + A+ + + L L + + A+ S +
Sbjct: 454 QTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGL--------TPDQVVAIASNIG 505
Query: 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783
+ Q++L + A P Q G + + +
Sbjct: 506 -----------GKQALATVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLL 551
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVH 1843
A + PD G + + A L+ V A +
Sbjct: 552 PVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQA 611
Query: 1844 LGANTQAVEHFLTALNQQAATHDGLTPHGL 1873
L + + A A + H
Sbjct: 612 LETVQRLLPVLCQAHGLTPAQVVAIASHDG 641
Score = 82.4 bits (203), Expect = 1e-15
Identities = 42/286 (14%), Positives = 74/286 (25%), Gaps = 24/286 (8%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ K + + L A PD S G E + + L + +
Sbjct: 332 ASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGL 391
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQES--NPRPSAYKA-----DALP 1719
P + A+ + E + L L + P Q +A LP
Sbjct: 392 TPDQVVAIASNGGKQALET-VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLP 450
Query: 1720 SKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ------NGLGVLF 1773
L + T ++S + +Q L Q+ + +G
Sbjct: 451 V-LCQTHGLTPAQVVAIASHDGGKQALETV-QQLLPVLCQAHGLTPDQVVAIASNIGGKQ 508
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
L+ + + A + PD G + + A L+P V A
Sbjct: 509 ALAT-VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVA 567
Query: 1834 RYNLGITCVHLGANTQAVEHFLTAL-----NQQAATHDGLTPHGLE 1874
+ G L + + A A + LE
Sbjct: 568 IASNGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALE 613
Score = 82.0 bits (202), Expect = 2e-15
Identities = 33/270 (12%), Positives = 68/270 (25%), Gaps = 25/270 (9%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A PD S E + + L + + P
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 359
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + + L L +A L P ++ +A+
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLC----------------QAHGLTPDQVVAIAS-- 401
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A P Q + + +
Sbjct: 402 ---NGGKQALETVQRLLPVLCQAHGLTPDQ---VVAIASHDGGKQALETVQRLLPVLCQT 455
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ P ++ + A L+P V A + L +
Sbjct: 456 HGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQR 515
Query: 1850 AVEHFLTALNQQAATHDGLTPHGLEPRAVK 1879
+ A + +G +A++
Sbjct: 516 LLPVLCQAHGLTPDQVVAIASNGGGKQALE 545
Score = 77.0 bits (189), Expect = 4e-14
Identities = 32/253 (12%), Positives = 58/253 (22%), Gaps = 29/253 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+ L A + + G A A L++ P + A+
Sbjct: 137 EALLTDAGELRGPPLQLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIA 196
Query: 1678 AISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSP 1735
+ + + L L + P Q A+ S
Sbjct: 197 SNNGGKQALETVQRLLPVLCQAHGLTPAQ----------VVAIASHDG-----------G 235
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795
+ E Q++L + A P Q + + + A + PD
Sbjct: 236 KQALETMQRLLPVLCQAHGLPPDQ---VVAIASNIGGKQALETVQRLLPVLCQAHGLTPD 292
Query: 1796 DSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFL 1855
G + + A L+P V A + L + +
Sbjct: 293 QVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLC 352
Query: 1856 TALN---QQAATH 1865
A Q
Sbjct: 353 QAHGLTPDQVVAI 365
Score = 76.6 bits (188), Expect = 6e-14
Identities = 39/261 (14%), Positives = 71/261 (27%), Gaps = 32/261 (12%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A S E + + L + + P
Sbjct: 571 NGGGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTP 630
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + AL+T++ + P +A L P ++ +A++
Sbjct: 631 AQVVAI-------ASHDGGKQALETVQRLL---------PVLCQAHGLTPDQVVAIASNG 674
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
+ E Q++L + A Q + + + A
Sbjct: 675 GG----KQALETVQRLLPVLCQAHGLTQEQ---VVAIASNNGGKQALETVQRLLPVLCQA 727
Query: 1790 LQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQ 1849
+ PD G + + A L+P V A + Q
Sbjct: 728 HGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGG-------KQ 780
Query: 1850 AVEHFLTALNQQAATHDGLTP 1870
A+E L H GLT
Sbjct: 781 ALETVQRLLPVLCQDH-GLTL 800
Score = 70.8 bits (173), Expect = 4e-12
Identities = 38/262 (14%), Positives = 74/262 (28%), Gaps = 34/262 (12%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
K + + L A P S E + + L + + P
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTP 664
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADAL-PSKLTRLANHT 1729
+ A+ + AL+T++ + P +A L ++ +A++
Sbjct: 665 DQVVAI-------ASNGGGKQALETVQRLL---------PVLCQAHGLTQEQVVAIASNN 708
Query: 1730 LTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 1789
++ E Q++L + A P Q G + + + A
Sbjct: 709 GGKQA----LETVQRLLPVLCQAHGLTPDQ---VVAIASNGGGKQALETVQRLLPVLCQA 761
Query: 1790 LQVRPDDSR-LWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT 1848
+ P + + +G A + + L+ V A +
Sbjct: 762 HGLTPAQVVAIASNIGGKQALE-TVQRLLPVLCQDHGLTLAQVVAIAS-------NIGGK 813
Query: 1849 QAVEHFLTALNQQAATHDGLTP 1870
QA+E L H GLT
Sbjct: 814 QALETVQRLLPVLCQAH-GLTQ 834
Score = 57.3 bits (138), Expect = 4e-08
Identities = 39/274 (14%), Positives = 78/274 (28%), Gaps = 34/274 (12%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
G K + + L A P S E + + L + +
Sbjct: 741 NGGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 800
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKAD------------AL 1718
+ AI+ + L L + + + A ++ L
Sbjct: 801 AQVV---AIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLL 857
Query: 1719 PSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA-ARQCPSQSIDPDVQNGLGVLFNLSD 1777
P L + T ++S +Q L C + D + S+
Sbjct: 858 PV-LCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAI-----ASN 911
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQ-------LSPGF 1830
+A++ + L V D L ++A+ + ++A+E L L+P
Sbjct: 912 GGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLCQDHGLTPNQ 971
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQQAAT 1864
V A + G +++ L+ + A
Sbjct: 972 VVAIASNGG-----KQALESIVAQLSRPDPALAA 1000
Score = 43.9 bits (103), Expect = 7e-04
Identities = 30/257 (11%), Positives = 58/257 (22%), Gaps = 29/257 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+ + L S E + + L + + + A+
Sbjct: 782 LETVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIA 841
Query: 1678 AISICFTNEACLHDALDTLKDKIR----PGQESNPRPSAYKA-----DALPSKLTRLANH 1728
+ + L L +A LP L +
Sbjct: 842 SNIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPV-LCQDHGL 900
Query: 1729 TLTFRSPLSSR------EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
TL ++S E Q++L + P Q + +
Sbjct: 901 TLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQV---VAIASNSGGKQALETVQRL 957
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTAL-QLSPGFVRARYNLGITC 1841
+ + P+ G A + + AL L+ + A LG
Sbjct: 958 LPVLCQDHGLTPNQVVAIASNGGKQALES-IVAQLSRPDPALAALTNDHLVALACLG--- 1013
Query: 1842 VHLGANTQAVEHFLTAL 1858
A++ L
Sbjct: 1014 -----GRPAMDAVKKGL 1025
Score = 30.8 bits (69), Expect = 6.0
Identities = 24/178 (13%), Positives = 44/178 (24%), Gaps = 18/178 (10%)
Query: 1701 RPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQC---- 1756
PR + R+ S++ +++ + Q
Sbjct: 22 SSMAARPPRAKPAPRRRAAQPSDASPAAQVDLRTLGYSQQQQEKIKPKVRSTVAQHHEAL 81
Query: 1757 ----PSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNR 1812
+ + + L ++ Y + A D + + + A
Sbjct: 82 VGHGFTHAHIVALSQHPAALGTVAVTYQHIITALPEAT--HEDIVGVGKQWSGARALEAL 139
Query: 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870
+A E LQL G + G +AV AL LTP
Sbjct: 140 LTDAGELRGPPLQLDTGQLVKIAKRG-----GVTAMEAVHASRNALTGAPLN---LTP 189
Score = 30.8 bits (69), Expect = 6.7
Identities = 13/97 (13%), Positives = 27/97 (27%), Gaps = 1/97 (1%)
Query: 1604 NETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALS 1663
++ A A K + + L PD S E + + L
Sbjct: 903 DQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLPVLC 962
Query: 1664 KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKI 1700
+ + P + A+ + E+ + L +
Sbjct: 963 QDHGLTPNQVVAIASNGGKQALESIV-AQLSRPDPAL 998
Score = 30.0 bits (67), Expect = 10.0
Identities = 16/149 (10%), Positives = 38/149 (25%), Gaps = 18/149 (12%)
Query: 703 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
+ E Q++L + A P+Q + + + A +
Sbjct: 607 GGKQALETVQRLLPVLCQAHGLTPAQ---VVAIASHDGGKQALETVQRLLPVLCQAHGLT 663
Query: 763 PDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ 821
PD + KQ + L +A + +
Sbjct: 664 PDQVVAIASN------GGGKQALETVQRLLPVL----CQAHGLTQEQ----VVAIASNNG 709
Query: 822 WEESQKQVDRARSIYERALDVDHRNITLW 850
+++ + V R + +A + +
Sbjct: 710 GKQALETVQRLLPVLCQAHGLTPDQVVAI 738
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide
repeat, TPR, chapero virulence; 2.15A {Shigella flexneri}
PDB: 3gz1_A 3gz2_A 3ks2_A
Length = 151
Score = 81.8 bits (202), Expect = 5e-18
Identities = 21/130 (16%), Positives = 40/130 (30%), Gaps = 3/130 (2%)
Query: 1734 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN---GLGVLFNLSDEYDKAVDCFRSAL 1790
+ + I V+ + A +I D+ + F ++A FR
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
+ L A + ++A + Y A L ++ G + L A +A
Sbjct: 64 IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123
Query: 1851 VEHFLTALNQ 1860
E F +
Sbjct: 124 KECFELVIQH 133
Score = 63.7 bits (155), Expect = 1e-11
Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 3/87 (3%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
++ + + D GL ++ + +++ +A D + A + +D
Sbjct: 52 IEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSP 1828
G P +A E + +Q S
Sbjct: 109 HTGQCQLRLKAPLKAKECFELVIQHSN 135
Score = 61.0 bits (148), Expect = 1e-10
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 7/97 (7%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
++ + +G + A ++ + N + + L EQ QA + ++
Sbjct: 40 YSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL 99
Query: 1669 EPKNLEALMAISICF-----TNEA--CLHDALDTLKD 1698
+ + C +A C + D
Sbjct: 100 GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
Score = 44.0 bits (104), Expect = 8e-05
Identities = 6/70 (8%), Positives = 13/70 (18%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L + A A ++ G + +A +
Sbjct: 74 MGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQH 133
Query: 1669 EPKNLEALMA 1678
+ A
Sbjct: 134 SNDEKLKIKA 143
Score = 43.2 bits (102), Expect = 1e-04
Identities = 9/93 (9%), Positives = 24/93 (25%), Gaps = 5/93 (5%)
Query: 1628 LEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEA 1687
L+ D + S + +A + N++ +M ++ + +
Sbjct: 25 LKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE 84
Query: 1688 CLHDALDTLK--DKIRPGQESNPRPSAYKADAL 1718
A D + + P +
Sbjct: 85 QFQQAADLYAVAFALGKN---DYTPVFHTGQCQ 114
Score = 41.7 bits (98), Expect = 4e-04
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 29/158 (18%)
Query: 1647 ISLAENEQDPQAI-------AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDK 1699
+++ ENE A+ A L +I ++ + + + F N+ + +A +
Sbjct: 3 LNITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFL 62
Query: 1700 IRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759
+ Y + LA +E QQ LY A +
Sbjct: 63 C----IYDFYNVDY--------IMGLAA-------IYQIKEQFQQAADLYAVAFALGKN- 102
Query: 1760 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797
D G KA +CF +Q D+
Sbjct: 103 --DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138
Score = 37.5 bits (87), Expect = 0.011
Identities = 6/62 (9%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ + + D GL ++ + +++ +A D + A + + +
Sbjct: 52 IEEAEVFFRFLCIYDFY---NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF 108
Query: 771 YL 772
+
Sbjct: 109 HT 110
Score = 34.4 bits (79), Expect = 0.15
Identities = 13/54 (24%), Positives = 16/54 (29%), Gaps = 3/54 (5%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
QQ LY A + D G KA +CF +Q D
Sbjct: 86 FQQAADLYAVAFALGKN---DYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136
Score = 32.8 bits (75), Expect = 0.44
Identities = 9/71 (12%), Positives = 22/71 (30%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVT 875
YA ++ +++ A + D N+ + + Q A +L+ A
Sbjct: 39 IYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA 98
Query: 876 ILPRANQFWYK 886
+ +
Sbjct: 99 LGKNDYTPVFH 109
Score = 30.9 bits (70), Expect = 2.2
Identities = 20/143 (13%), Positives = 39/143 (27%), Gaps = 18/143 (12%)
Query: 703 SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN---GLGVLFNLSDEYDKAVDCFRSAL 759
+ + I V+ + A +I D+ + F ++A FR
Sbjct: 4 NITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63
Query: 760 QVRPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIK 818
+ ++ L + Q + Y AF + KN
Sbjct: 64 IYDFYNVDYIMGLAAIY------QIKEQFQQAADLYA----VAFA--LGKNDYTPVFHTG 111
Query: 819 YAQWEESQKQVDRARSIYERALD 841
Q K +A+ +E +
Sbjct: 112 QCQLR--LKAPLKAKECFELVIQ 132
Score = 29.4 bits (66), Expect = 6.8
Identities = 4/44 (9%), Positives = 9/44 (20%)
Query: 1818 EAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
+ + Y+ + G +A F
Sbjct: 23 ATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD 66
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein;
secretin, TPR repeat, type IV pilus, bacterail virulence;
1.54A {Neisseria meningitidis}
Length = 225
Score = 83.9 bits (208), Expect = 6e-18
Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 6/106 (5%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL-ANGNRPEE 1815
DP ++ DKA + FR AL ++PD + + N G L NRP E
Sbjct: 36 KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAE 95
Query: 1816 AVEAYHTALQLS--PGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
++ + AL P A N GI G A + +L
Sbjct: 96 SMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLA 141
Score = 80.4 bits (199), Expect = 1e-16
Identities = 19/98 (19%), Positives = 37/98 (37%), Gaps = 1/98 (1%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823
+++ L + + +Y +A AL+ P + W ++A E++ A
Sbjct: 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQA 68
Query: 1824 LQLSPGFVRARYNLGIT-CVHLGANTQAVEHFLTALNQ 1860
L + P N G C L +++ +F AL
Sbjct: 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALAD 106
Score = 80.0 bits (198), Expect = 1e-16
Identities = 30/233 (12%), Positives = 64/233 (27%), Gaps = 27/233 (11%)
Query: 1632 AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHD 1691
A++ + + L + + QA A++ L +PKN A + + +
Sbjct: 1 AEKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDK 60
Query: 1692 ALDTLKD--KIRPGQESNPRPSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLS 1747
A ++ + I+P L +L R + ++
Sbjct: 61 AQESFRQALSIKPD-----SAEINNNYGWFLCGRLNRP-----------------AESMA 98
Query: 1748 LYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASL 1807
+ A P+ G+ ++ A + +L +P + L +
Sbjct: 99 YFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTK 157
Query: 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+ +A + LG N QA + L
Sbjct: 158 MLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210
Score = 76.1 bits (188), Expect = 3e-15
Identities = 41/242 (16%), Positives = 66/242 (27%), Gaps = 38/242 (15%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
AE + L E +R D A +E A K +P N WL + +
Sbjct: 1 AEKANQVSNIK-TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVND 59
Query: 1657 QAIAALSKCLSIEPKNLEAL--MAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-AY 1713
+A + + LSI+P + E +C +++ + + P P A
Sbjct: 60 KAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALA--DPTYPTPYIAN 116
Query: 1714 --KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPD---VQNG 1768
K +K + + L + P
Sbjct: 117 LNKGICS-AKQGQFGLAEAYLKRSL-----------------------AAQPQFPPAFKE 152
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
L L+ + A F+ LG +A A AY QL
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA--KALGNAQAAYEYEAQLQA 210
Query: 1829 GF 1830
F
Sbjct: 211 NF 212
Score = 55.3 bits (134), Expect = 3e-08
Identities = 26/157 (16%), Positives = 52/157 (33%), Gaps = 15/157 (9%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
DP ++ DKA + FR AL ++PD E+ L ++
Sbjct: 36 KSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFL-----CGRL 90
Query: 786 SDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDH 844
+ P E + + KA D + + + Q Q A + +R+L
Sbjct: 91 NRPAESMAYF----DKALADPTYPTPYIANLNKGICSAK--QGQFGLAEAYLKRSLAAQP 144
Query: 845 RNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRAN 881
+ + + +M Q+ A + + + +
Sbjct: 145 QFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ 181
Score = 41.1 bits (97), Expect = 0.002
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 2/65 (3%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
L + K+ G L A Y + + L LG +A+ + A AA ++
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGN--AQAAYEYEAQLQA 210
Query: 1671 KNLEA 1675
+
Sbjct: 211 NFPYS 215
Score = 34.5 bits (80), Expect = 0.20
Identities = 8/50 (16%), Positives = 16/50 (32%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
Y + A P+ G+ ++ A + +L +P F
Sbjct: 99 YFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP 148
Score = 31.5 bits (72), Expect = 2.3
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ P L L+ + A F+
Sbjct: 141 AAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA 182
Score = 29.5 bits (67), Expect = 8.2
Identities = 9/37 (24%), Positives = 12/37 (32%), Gaps = 4/37 (10%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWE 1147
+E A K +P N WL Q L +
Sbjct: 28 TASIEDALKSDPKNELAWLVRAEIY----QYLKVNDK 60
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus
protein, superhelix, de novo protein; 2.30A {Synthetic}
SCOP: k.38.1.1 PDB: 2hyz_A
Length = 136
Score = 80.5 bits (200), Expect = 1e-17
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 3/102 (2%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+DP LG + +YD+A++ ++ AL++ P + W LG + +EA
Sbjct: 29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 88
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+E Y AL+L P A YNLG G +A+E++ AL
Sbjct: 89 IEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 130
Score = 76.7 bits (190), Expect = 2e-16
Identities = 29/95 (30%), Positives = 48/95 (50%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTA 1823
+ LG + +YD+A++ ++ AL++ P + W LG + +EA+E Y A
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 61
Query: 1824 LQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L+L P A YNLG G +A+E++ AL
Sbjct: 62 LELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL 96
Score = 59.7 bits (146), Expect = 2e-10
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+DP LG + +YD+A++ ++ AL++ P + W LG + +EA
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEA 122
Query: 1817 VEAYHTALQLSP 1828
+E Y AL+L P
Sbjct: 123 IEYYQKALELDP 134
Score = 47.4 bits (114), Expect = 3e-06
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
QGD AI Y + A + +P +AE W +LG + + +AI K L ++P++
Sbjct: 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136
Score = 47.4 bits (114), Expect = 3e-06
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P +AE W +LG + + +AI K L ++P++ EA
Sbjct: 14 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 71
Score = 45.5 bits (109), Expect = 2e-05
Identities = 20/58 (34%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P +AE W +LG + + +AI K L ++P++ EA
Sbjct: 48 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEA 105
Score = 38.9 bits (92), Expect = 0.003
Identities = 30/165 (18%), Positives = 63/165 (38%), Gaps = 38/165 (23%)
Query: 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKD 1698
AE W +LG + + +AI K L ++P++ EA + + + +A++ +
Sbjct: 1 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 60
Query: 1699 KIRPGQESNPR-PSAY--KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755
+ E +PR A+ +A K + A +
Sbjct: 61 AL----ELDPRSAEAWYNLGNAY-YKQGD-------------------------YDEAIE 90
Query: 1756 CPSQSI--DPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795
+++ DP LG + +YD+A++ ++ AL++ P
Sbjct: 91 YYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
Score = 37.4 bits (88), Expect = 0.010
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+DP LG + +YD+A++ ++ AL++ P E
Sbjct: 29 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 70
Score = 36.6 bits (86), Expect = 0.021
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+DP LG + +YD+A++ ++ AL++ P E
Sbjct: 63 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 104
Score = 33.9 bits (79), Expect = 0.15
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ LG + +YD+A++ ++ AL++ P E
Sbjct: 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE 36
Score = 33.9 bits (79), Expect = 0.17
Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
+DP LG + +YD+A++ ++ AL++ P
Sbjct: 97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A
{Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Length = 125
Score = 79.7 bits (198), Expect = 1e-17
Identities = 31/103 (30%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 1760 SIDP----DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
++DP + LG + +YD+A++ ++ AL++ P+++ W LG + +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
A+E Y AL+L P A YNLG G +A+E++ AL
Sbjct: 62 AIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKAL 104
Score = 75.9 bits (188), Expect = 3e-16
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 3/89 (3%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+DP+ LG + +YD+A++ ++ AL++ P+++ W LG + +EA
Sbjct: 37 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEA 96
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVHLG 1845
+E Y AL+L P A+ NLG G
Sbjct: 97 IEYYQKALELDPNNAEAKQNLGNAKQKQG 125
Score = 45.8 bits (110), Expect = 1e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P+NAE W +LG + + +AI K L ++P N EA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 44.7 bits (107), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P+NAE W +LG + + +AI K L ++P N EA
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113
Score = 38.9 bits (92), Expect = 0.002
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
++AE W +LG + + +AI K L ++P N EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
Score = 38.9 bits (92), Expect = 0.003
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 729 SIDP----DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++DP + LG + +YD+A++ ++ AL++ P+ E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 44
Score = 37.4 bits (88), Expect = 0.008
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+DP+ LG + +YD+A++ ++ AL++ P+ E
Sbjct: 37 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Score = 37.4 bits (88), Expect = 0.009
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+DP+ LG + +YD+A++ ++ AL++ P+ E
Sbjct: 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 112
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2,
protein structure initiative; NMR {Bordetella
parapertussis}
Length = 115
Score = 78.9 bits (195), Expect = 2e-17
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGI 1839
+ + L D+ L LG + A + + A+ AL P + A LG
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGK 61
Query: 1840 TCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881
T G A + + + L + + VKE+
Sbjct: 62 TLQGQGDRAGARQAWESGLA--------AAQSRGDQQVVKEL 95
Score = 72.0 bits (177), Expect = 5e-15
Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
+ D ++ LG + +++D A+ R+AL P S W LG +L A
Sbjct: 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGA 72
Query: 1817 VEAYHTALQLSP--GFVRARYNLGITCVHLGANTQAVEHF 1854
+A+ + L + G + L + L A+EH
Sbjct: 73 RQAWESGLAAAQSRGDQQVVKELQVFLRRLAR-EDALEHH 111
Score = 60.8 bits (148), Expect = 4e-11
Identities = 15/70 (21%), Positives = 25/70 (35%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
F LG+ +A+ +L AA +P + W LG +L A A L+
Sbjct: 23 FTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82
Query: 1669 EPKNLEALMA 1678
+ +
Sbjct: 83 AQSRGDQQVV 92
Score = 53.1 bits (128), Expect = 2e-08
Identities = 17/55 (30%), Positives = 25/55 (45%)
Query: 1621 LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
+ + LEA Q DN + +LG + AE+EQ A+ L L +P A
Sbjct: 1 MQAITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA 55
Score = 35.4 bits (82), Expect = 0.030
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ D ++ LG + +++D A+ R+AL P ++
Sbjct: 13 AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54
Score = 32.7 bits (75), Expect = 0.31
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 16/73 (21%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRMD---------- 1160
LEA Q DN + +LG + AE+EQ ++ L +++ A D
Sbjct: 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQ-----FDAALPHLRAALDFDPTYSVAWKWL 59
Query: 1161 -NLLAEMRDIEAA 1172
L D A
Sbjct: 60 GKTLQGQGDRAGA 72
Score = 31.9 bits (73), Expect = 0.59
Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 15/99 (15%)
Query: 749 DKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE-LRDYQHRKRKAFEDNIR 807
+ + L D L L + + D L R A +
Sbjct: 2 QAITERLEAMLAQGTDNMLLRFTLGKTY------AEHEQFDAALPHL----RAA----LD 47
Query: 808 KNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRN 846
+ W + + Q AR +E L
Sbjct: 48 FDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86
Score = 31.2 bits (71), Expect = 0.92
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 323 ARYNLGITCVHLGANTQAVEHFLTALNQQ---AAAHDGL 358
R+ LG T A+ H AL+ + A L
Sbjct: 21 LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWL 59
Score = 29.2 bits (66), Expect = 4.2
Identities = 7/39 (17%), Positives = 9/39 (23%), Gaps = 3/39 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
DP LG + A + S L
Sbjct: 47 DFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis,
TPR, superhelix, protein binding; HET: MSE; 2.00A
{Pseudomonas aeruginosa} PDB: 2fi7_A
Length = 252
Score = 82.7 bits (205), Expect = 3e-17
Identities = 31/104 (29%), Positives = 44/104 (42%), Gaps = 5/104 (4%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEA 1816
IDP L V+F E A + +R AL ++R+ N G L R EEA
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEA 124
Query: 1817 VEAYHTALQLS--PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A Q + P R NLG+ + + QA E+F +L
Sbjct: 125 YQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL 168
Score = 82.3 bits (204), Expect = 4e-17
Identities = 40/245 (16%), Positives = 83/245 (33%), Gaps = 27/245 (11%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
+G L+ K + + ++ LG+ + QA L K L I+P + +A
Sbjct: 17 RGSHMGDQNPLKTD-KGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHA 75
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737
A+++ F E A + + KA A S+ R+ N+ F L
Sbjct: 76 ALAVVFQTEMEPKLADEEYR----------------KALASDSRNARVLNNYGGF---LY 116
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
++ +++ L A++ ++ P+ LG++ + +A + F +L++
Sbjct: 117 EQKRYEEAYQRLLEASQD----TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Query: 1795 DDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHF 1854
+ + + L A + Y Q R+ A +
Sbjct: 173 NQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYG 232
Query: 1855 LTALN 1859
L
Sbjct: 233 LQLKR 237
Score = 80.8 bits (200), Expect = 1e-16
Identities = 32/229 (13%), Positives = 68/229 (29%), Gaps = 30/229 (13%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG L++G+ A + L A + +P +A+ +L + + A K L+ +
Sbjct: 43 LGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS 102
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTL 1730
+N L + +A L + + P + L
Sbjct: 103 RNARVLNNYGGFLYEQKRYEEAYQRLLEASQ--DTLYPER----SRV----FENLGL--- 149
Query: 1731 TFRSPLSSREIHQQVLSLYLNAARQCPSQ--SIDPD---VQNGLGVLFNLSDEYDKAVDC 1785
S ++ + A++ + ++ + V + L EY A
Sbjct: 150 ------VSLQMKK------PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQY 197
Query: 1786 FRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
+ Q ++R + A +L PG + +
Sbjct: 198 YDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQ 246
Score = 77.3 bits (191), Expect = 2e-15
Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 3/117 (2%)
Query: 1747 SLYLNAARQCPSQSIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRL 1803
++ + + LG+ + ++A R AL++ P + L
Sbjct: 18 GSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAAL 77
Query: 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
P+ A E Y AL R N G +A + L A
Sbjct: 78 AVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQD 134
Score = 73.1 bits (180), Expect = 6e-14
Identities = 20/114 (17%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVR--PDDSRLWNRLGASLANGNRPE 1814
+ D V N G Y++A A Q P+ SR++ LG +P
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPA 158
Query: 1815 EAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGL 1868
+A E + +L+L+ + A +++ L
Sbjct: 159 QAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL 212
Score = 49.6 bits (119), Expect = 3e-06
Identities = 27/161 (16%), Positives = 55/161 (34%), Gaps = 30/161 (18%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
IDP L V+F E A + +R AL +L L +
Sbjct: 65 EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL------YEQ 118
Query: 786 SDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ-WE------ESQKQVDRARSIYE 837
+E + +A +D + ++ +E K+ +A+ +E
Sbjct: 119 KRYEEAYQRL----LEASQDTLYPE---------RSRVFENLGLVSLQMKKPAQAKEYFE 165
Query: 838 RALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
++L ++ ++ L+ +L + R+ AR +D
Sbjct: 166 KSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGG 206
Score = 36.5 bits (85), Expect = 0.058
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 9/80 (11%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI 785
++ + V + L EY A + Q L+ +
Sbjct: 169 RLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLA------KVF 222
Query: 786 SDPDELRDYQHRKRKAFEDN 805
D D Y + ++ + +
Sbjct: 223 EDRDTAASYGLQLKRLYPGS 242
Score = 34.6 bits (80), Expect = 0.27
Identities = 25/161 (15%), Positives = 48/161 (29%), Gaps = 22/161 (13%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVR--PDFTELLVYLFSSLDFQPPKQ 783
+ D V N G Y++A A Q P+ + + L
Sbjct: 99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS------L 152
Query: 784 KISDPDE-LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
++ P + + K+ N R V A +++ AR Y+
Sbjct: 153 QMKKPAQAKEYF----EKSLRLN-RNQPSVALE---MADLLYKEREYVPARQYYDLFAQG 204
Query: 843 DHRNI-TLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQ 882
+N +L L L + A + + + P + +
Sbjct: 205 GGQNARSLLLGIR-LAKVFEDRDTAASYGLQLKRLYPGSLE 244
Score = 34.2 bits (79), Expect = 0.30
Identities = 9/50 (18%), Positives = 18/50 (36%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
L A Q V LG++ + +A + F +L++ +
Sbjct: 127 RLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown
function, PSI-2, protein structure initiative; NMR
{Methanococcus maripaludis}
Length = 112
Score = 77.9 bits (193), Expect = 5e-17
Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
Query: 1761 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY 1820
+P+ GVL + Y +++D F A+Q+ P++S+ W G +L N R EEAV+ Y
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
Query: 1821 HTALQLSPGFVRAR--YNLGITCVHLGANTQAVEHFLTAL 1858
+ + + ++ E
Sbjct: 64 NYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103
Score = 59.0 bits (144), Expect = 2e-10
Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPD--DSRLWNRLGASLANGNRPE 1814
+DP+ G + Y++AVDC+ + V D + +W +L E
Sbjct: 34 QLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKE 93
Query: 1815 EAVEAYHTALQLSPGF 1830
E +L
Sbjct: 94 VEAEIAEARAKLEHHH 109
Score = 51.3 bits (124), Expect = 8e-08
Identities = 10/65 (15%), Positives = 24/65 (36%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
+ + G + E+++ + A+QL P + G +L +AV+
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDC 62
Query: 1854 FLTAL 1858
+ +
Sbjct: 63 YNYVI 67
Score = 44.4 bits (106), Expect = 2e-05
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 3/70 (4%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+ N G + G+ +I E A + +P+ ++ WL G +L E+ +A+
Sbjct: 2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVD 61
Query: 1661 ALSKCLSIEP 1670
+ +++
Sbjct: 62 CYNYVINVIE 71
Score = 40.5 bits (96), Expect = 5e-04
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
N E + G+ + ++I K + ++P+ +
Sbjct: 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKY 42
Score = 38.6 bits (91), Expect = 0.003
Identities = 8/58 (13%), Positives = 14/58 (24%), Gaps = 2/58 (3%)
Query: 1617 RQGDLPSAILYLEAAAKQEPD--NAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
A+ D N +VW + +L E +E +
Sbjct: 52 NLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
Score = 34.0 bits (79), Expect = 0.087
Identities = 10/38 (26%), Positives = 21/38 (55%)
Query: 730 IDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+P+ GVL + Y +++D F A+Q+ P+ ++
Sbjct: 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK 41
Score = 33.6 bits (78), Expect = 0.15
Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVY 771
+DP+ G + Y++AVDC+ + V D V+
Sbjct: 34 QLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVW 79
Score = 30.9 bits (71), Expect = 1.0
Identities = 1/42 (2%), Positives = 9/42 (21%), Gaps = 5/42 (11%)
Query: 729 SIDPDVQ-----NGLGVLFNLSDEYDKAVDCFRSALQVRPDF 765
++ D + + + + ++
Sbjct: 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural
protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Length = 308
Score = 82.8 bits (204), Expect = 6e-17
Identities = 23/122 (18%), Positives = 44/122 (36%), Gaps = 23/122 (18%)
Query: 808 KNRMVISNWIKYAQWEESQKQV--------DRARSIYERALDVDHRNITLWLKYT----- 854
+ + W KY QWE+S R YE+ L V + +W +
Sbjct: 3 QEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQ 62
Query: 855 ---------ELEMRNRQVNHARNLWDRAV-TILPRANQFWYKYTYMEEMLENVAGKLFVF 904
++ + A N+++RA+ T+L + ++ Y EE ++
Sbjct: 63 SSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIY 122
Query: 905 HR 906
+R
Sbjct: 123 NR 124
Score = 70.9 bits (173), Expect = 6e-13
Identities = 31/205 (15%), Positives = 66/205 (32%), Gaps = 19/205 (9%)
Query: 707 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFT 766
++ + ++Y A ++ + +Y+K + L +
Sbjct: 76 AKLFSDEAANIYERAISTLLKKN--MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-D 132
Query: 767 ELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWE-ES 825
LVY+ + F ++ R + R+ ++ A E
Sbjct: 133 PTLVYI-QYMKFA---RRAEGIKSGRMIFKKAREDARTRHH-------VYVTAALMEYYC 181
Query: 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP----RAN 881
K A I+E L L Y + + N+ R L++R +T ++
Sbjct: 182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG 241
Query: 882 QFWYKYTYMEEMLENVAGKLFVFHR 906
+ W ++ E + ++A L V R
Sbjct: 242 EIWARFLAFESNIGDLASILKVEKR 266
Score = 61.2 bits (148), Expect = 8e-10
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 19/140 (13%)
Query: 786 SDPDELRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQ--------------KQ 828
S+P D R A+E + W + AQ+ E
Sbjct: 20 SNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF 79
Query: 829 VDRARSIYERALDV-DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQF-WYK 886
D A +IYERA+ +N+ L+ Y + E + ++++R + I + +
Sbjct: 80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ 139
Query: 887 YTYMEEMLENVAGKLFVFHR 906
Y E + +F +
Sbjct: 140 YMKFARRAEGIKSGRMIFKK 159
Score = 58.1 bits (140), Expect = 1e-08
Identities = 20/159 (12%), Positives = 47/159 (29%), Gaps = 22/159 (13%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDN 805
+ F+ A + + V + +++ K D K FE
Sbjct: 148 EGIKSGRMIFKKAREDARTRHHVYVT-AALMEYYCSK----DKS-------VAFKIFELG 195
Query: 806 IRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVD----HRNITLWLKYTELEMRNR 861
++K + + Y + + + R ++ER L ++ +W ++ E
Sbjct: 196 LKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 255
Query: 862 QVNHARNLWDRAVTILPRAN------QFWYKYTYMEEML 894
+ + R T +Y +M+
Sbjct: 256 DLASILKVEKRRFTAFREEYEGKETALLVDRYKFMDLYP 294
Score = 44.3 bits (104), Expect = 2e-04
Identities = 22/143 (15%), Positives = 44/143 (30%), Gaps = 13/143 (9%)
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL-LVYLFSSL 776
AR+ V L + + S + A F L+ D E L Y+
Sbjct: 156 IFKKAREDARTRHHVYVTAAL-MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYI---- 210
Query: 777 DFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIY 836
D+ +++ + R R + K+ + W ++ +E + + +
Sbjct: 211 DYL---SHLNEDNNTRVLFERVLTSGSLPPEKSGEI---WARFLAFESNIGDLASILKVE 264
Query: 837 ERALDVDHRNITLWLKYTELEMR 859
+R R + L R
Sbjct: 265 KRRFTA-FREEYEGKETALLVDR 286
Score = 33.9 bits (77), Expect = 0.50
Identities = 26/220 (11%), Positives = 54/220 (24%), Gaps = 13/220 (5%)
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+ + + + E + ++W L ++ + ++ +
Sbjct: 24 RTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEA 83
Query: 1673 LEALM-AISICFTNEACLHDALDTLKD---KIRPGQESNPRPSAYKADALPSKLTRLANH 1728
AIS L+ A ++ K R A + +
Sbjct: 84 ANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKF 143
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
S R I ++ AR+ V L + + S + A F
Sbjct: 144 ARRAEGIKSGRMIFKK--------AREDARTRHHVYVTAAL-MEYYCSKDKSVAFKIFEL 194
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
L+ D L++ N + L
Sbjct: 195 GLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 234
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein
O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB:
2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Length = 568
Score = 84.1 bits (208), Expect = 2e-16
Identities = 21/117 (17%), Positives = 27/117 (23%), Gaps = 3/117 (2%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
+ L A R P D L + + L + P
Sbjct: 5 GPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
RLG R EA A +P LG G A + A
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAH 118
Score = 73.3 bits (180), Expect = 4e-13
Identities = 17/84 (20%), Positives = 28/84 (33%)
Query: 1775 LSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
++ + + + R+A++ RP D W L + A L L PG A
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAV 60
Query: 1835 YNLGITCVHLGANTQAVEHFLTAL 1858
LG + +A A
Sbjct: 61 ARLGRVRWTQQRHAEAAVLLQQAS 84
Score = 73.0 bits (179), Expect = 5e-13
Identities = 22/126 (17%), Positives = 33/126 (26%), Gaps = 3/126 (2%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805
P P+ LG + + +A + A P+ + LG
Sbjct: 43 EMAVQRGLALHPG---HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGH 99
Query: 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATH 1865
+L + + E A AY A QL P L L A
Sbjct: 100 ALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159
Query: 1866 DGLTPH 1871
+ P
Sbjct: 160 GAVEPF 165
Score = 59.5 bits (144), Expect = 8e-09
Identities = 24/204 (11%), Positives = 50/204 (24%), Gaps = 56/204 (27%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
D P +L L AA + P + WL L + A+ + L++ P + EA+
Sbjct: 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLS 1737
+ + +A L+ A
Sbjct: 62 RLGRVRWTQQRHAEAAVLLQ------------------QAS------------------- 84
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797
+ + + L + + + A + A Q+ P++
Sbjct: 85 --DAAPEHPGIALWLGH-----------------ALEDAGQAEAAAAAYTRAHQLLPEEP 125
Query: 1798 RLWNRLGASLANGNRPEEAVEAYH 1821
+ +L
Sbjct: 126 YITAQLLNWRRRLCDWRALDVLSA 149
Score = 59.1 bits (143), Expect = 1e-08
Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEP 1670
LG+ + Q A + L+ A+ P++ + L LG +L + Q A AA ++ + P
Sbjct: 63 LGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP 122
Query: 1671 KNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP 1708
+ + C ALD L ++R
Sbjct: 123 EEPYITAQLLNWR-RRLCDWRALDVLSAQVRAAVAQGV 159
Score = 49.8 bits (119), Expect = 8e-06
Identities = 13/98 (13%), Positives = 31/98 (31%), Gaps = 2/98 (2%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L +L GD + + ++ P + E LG ++ +A L +
Sbjct: 27 LMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA 86
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQ 1704
P++ + + + A ++ P +
Sbjct: 87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE 124
Score = 47.9 bits (114), Expect = 3e-05
Identities = 18/170 (10%), Positives = 35/170 (20%), Gaps = 16/170 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
+ L A R P D L + + L + P E +
Sbjct: 5 GPRELLQLRAAVRHRPQ---DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVA 61
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD 830
L + + + + E Q +
Sbjct: 62 RL------------GRVRWTQQRHAEAAV-LLQQASDAAPEHPGIALWLGHALEDAGQAE 108
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA 880
A + Y RA + + + R L + + +
Sbjct: 109 AAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158
Score = 47.9 bits (114), Expect = 3e-05
Identities = 8/76 (10%), Positives = 19/76 (25%)
Query: 1812 RPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPH 1871
+ A++ P A L + +G T L + +
Sbjct: 4 DGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARL 63
Query: 1872 GLEPRAVKEMSDSIWY 1887
G + +++
Sbjct: 64 GRVRWTQQRHAEAAVL 79
Score = 44.8 bits (106), Expect = 3e-04
Identities = 21/179 (11%), Positives = 55/179 (30%), Gaps = 19/179 (10%)
Query: 744 LSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFE 803
++ + + + R+A++ RP + L + + D A +
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFVAWLMLADAE------LGMGDTTA-------GEMAVQ 47
Query: 804 DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQV 863
+ + + + +Q++ A + ++A D + + L Q
Sbjct: 48 RGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQA 107
Query: 864 NHARNLWDRAVTILPRANQ------FWYKYTYMEEMLENVAGKLFVFHRDSISQVTLWL 916
A + RA +LP W + L+ ++ ++ + V +
Sbjct: 108 EAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVEPFA 166
Score = 44.1 bits (104), Expect = 5e-04
Identities = 16/96 (16%), Positives = 32/96 (33%), Gaps = 9/96 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
H + L A+ P P + LG + + + A + A Q+ P+ +
Sbjct: 73 HAEAAVLLQQASDAAPE---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITA 129
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNI 806
L + +++ D L + R A +
Sbjct: 130 QLLNWR------RRLCDWRALDVLSAQVRAAVAQGV 159
Score = 33.7 bits (77), Expect = 0.67
Identities = 21/124 (16%), Positives = 35/124 (28%), Gaps = 22/124 (17%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQ-------------LLGEFWE--HNLGNMQQ 1155
L+ A+ P++ + L LG +L + Q LL E L N ++
Sbjct: 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRR 136
Query: 1156 AFRMDNLLAEMRDIEAASQRPKPQQSAPISLLARQDD-------AREWANQFLEAGSHFE 1208
L + A+ P + L+ AR A +
Sbjct: 137 RLCDWRALDVLSAQVRAAVAQGVGAVEPFAFLSEDASAAEQLACARTRAQAIAASVRPLA 196
Query: 1209 HTPP 1212
T
Sbjct: 197 PTRV 200
Score = 33.3 bits (76), Expect = 0.86
Identities = 8/68 (11%), Positives = 18/68 (26%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
LG G +A A + P+ + L ++ +
Sbjct: 95 LWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154
Query: 1669 EPKNLEAL 1676
+ + A+
Sbjct: 155 VAQGVGAV 162
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A
{Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Length = 91
Score = 74.7 bits (185), Expect = 2e-16
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 1760 SIDP----DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
++DP + LG + +YD+A++ ++ AL++ P+++ W LG + +E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDE 61
Query: 1816 AVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
A+E Y AL+L P A+ NLG G
Sbjct: 62 AIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
Score = 53.6 bits (130), Expect = 9e-09
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
+ + W LG + +EA+E Y AL+L P A YNLG G +A+E+
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 1854 FLTAL 1858
+ AL
Sbjct: 66 YQKAL 70
Score = 44.3 bits (106), Expect = 1e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
QGD AI Y + A + +P+NAE W +LG + + +AI K L ++P N EA
Sbjct: 22 QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 79
Score = 37.8 bits (89), Expect = 0.003
Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 4/43 (9%)
Query: 729 SIDP----DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
++DP + LG + +YD+A++ ++ AL++ P+ E
Sbjct: 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 44
Score = 37.0 bits (87), Expect = 0.005
Identities = 13/40 (32%), Positives = 21/40 (52%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
++AE W +LG + + +AI K L ++P N EA
Sbjct: 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 45
Score = 36.6 bits (86), Expect = 0.007
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+DP+ LG + +YD+A++ ++ AL++ P+ E
Sbjct: 37 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE 78
Score = 28.5 bits (65), Expect = 4.6
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAE 1651
QGD AI Y + A + +P+NAE +LG + +
Sbjct: 56 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 89
>3k9i_A BH0479 protein; putative protein binding protein, structural
genomics, joint for structural genomics, JCSG; 2.71A
{Bacillus halodurans}
Length = 117
Score = 74.4 bits (183), Expect = 9e-16
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 3/92 (3%)
Query: 1778 EYDKAVDCFRSALQV---RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
+AV + A+ D + + LG++ +A ++ P R
Sbjct: 5 LEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALR 64
Query: 1835 YNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
+ +LG Q VE L + + +
Sbjct: 65 VFYAMVLYNLGRYEQGVELLLKIIAETSDDET 96
Score = 63.2 bits (154), Expect = 6e-12
Identities = 19/87 (21%), Positives = 28/87 (32%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
Q + Y A + GLG F EY KA + ++ P+ L
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSP 1828
L N R E+ VE + +
Sbjct: 66 FYAMVLYNLGRYEQGVELLLKIIAETS 92
Score = 46.2 bits (110), Expect = 5e-06
Identities = 23/109 (21%), Positives = 38/109 (34%), Gaps = 8/109 (7%)
Query: 1618 QGDLPSAILYLEAA---AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
G A+ Y E A Q D AE +L LG + + +A A L+ + P +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 1675 ALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPS-----AYKADAL 1718
+ ++ N ++ L I + S + AD L
Sbjct: 63 LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
Score = 44.7 bits (106), Expect = 2e-05
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
LG G+ A L KQ P++ + + + L + Q + L K ++
Sbjct: 31 LGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAE 90
Query: 1669 EPKN 1672
+
Sbjct: 91 TSDD 94
Score = 42.8 bits (101), Expect = 9e-05
Identities = 14/62 (22%), Positives = 21/62 (33%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q + Y A + GLG F EY KA + ++ P+ L V
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRV 65
Query: 771 YL 772
+
Sbjct: 66 FY 67
Score = 32.4 bits (74), Expect = 0.43
Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLFNLSDEYDKAVDCFRSALQVRPDFTELL 769
+++ ++ N +Q P+ ++ VL+NL Y++ V+ + D +
Sbjct: 43 YRKAEAVLANGVKQFPN---HQALRVFYAMVLYNL-GRYEQGVELLLKIIAETSDDETIQ 98
Query: 770 VY 771
Y
Sbjct: 99 SY 100
Score = 31.6 bits (72), Expect = 0.78
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 13/62 (20%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRM-DNLLAEMRDI 1169
L KQ P++ + + + L +NLG +Q + ++AE D
Sbjct: 47 EAVLANGVKQFPNHQALRVFYAMVL------------YNLGRYEQGVELLLKIIAETSDD 94
Query: 1170 EA 1171
E
Sbjct: 95 ET 96
Score = 31.6 bits (72), Expect = 0.83
Identities = 14/86 (16%), Positives = 32/86 (37%), Gaps = 23/86 (26%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLFNLSDEYDKAVDCFRSALQVRPDDSRLW 1800
+++ ++ N +Q P+ ++ VL+NL Y++ V+ + DD
Sbjct: 43 YRKAEAVLANGVKQFPN---HQALRVFYAMVLYNL-GRYEQGVELLLKIIAETSDD---- 94
Query: 1801 NRLGASLANGNRPEEAVEAYHTALQL 1826
E +++Y A+
Sbjct: 95 --------------ETIQSYKQAILF 106
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat,
type III secretion; HET: MLY; 1.95A {Yersinia
enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Length = 148
Score = 74.9 bits (184), Expect = 1e-15
Identities = 17/98 (17%), Positives = 32/98 (32%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ L S Y+ A F++ + DSR + LGA + + A+ +Y
Sbjct: 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYS 79
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ R ++ + G +A A
Sbjct: 80 YGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQE 117
Score = 63.0 bits (153), Expect = 2e-11
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 3/83 (3%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805
++ D GLG +YD A+ + + + R
Sbjct: 41 HXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 1806 SLANGNRPEEAVEAYHTALQLSP 1828
L EA A +L
Sbjct: 98 CLLQXGELAEAESGLFLAQELIA 120
Score = 61.5 bits (149), Expect = 7e-11
Identities = 15/89 (16%), Positives = 29/89 (32%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
++L + + G A +A + ++ +L LG Q AI + S +
Sbjct: 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLK 1697
+ + C L +A L
Sbjct: 85 DIXEPRFPFHAAECLLQXGELAEAESGLF 113
Score = 56.5 bits (136), Expect = 4e-09
Identities = 10/81 (12%), Positives = 18/81 (22%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
++ D L + E+A + L R L
Sbjct: 2 PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61
Query: 1838 GITCVHLGANTQAVEHFLTAL 1858
G +G A+ +
Sbjct: 62 GACRQAMGQYDLAIHSYSYGA 82
Score = 52.6 bits (126), Expect = 7e-08
Identities = 20/201 (9%), Positives = 41/201 (20%), Gaps = 59/201 (29%)
Query: 1619 GDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMA 1678
G L S + + D E SL + ++ A ++ + +
Sbjct: 1 GPLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLG 60
Query: 1679 ISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSS 1738
+ C A+ +Y
Sbjct: 61 LGACRQAMGQYDLAIH-----------------SY------------------------- 78
Query: 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV---RPD 1795
+ +P E +A A ++ P+
Sbjct: 79 ----SYGAVM----------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124
Query: 1796 DSRLWNRLGASLANGNRPEEA 1816
L R+ + L +E
Sbjct: 125 FXELSTRVSSMLEAIKLKKEM 145
Score = 38.7 bits (90), Expect = 0.004
Identities = 8/62 (12%), Positives = 15/62 (24%), Gaps = 3/62 (4%)
Query: 715 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFS 774
++ D GLG +YD A+ + + +
Sbjct: 41 HXVFQALCVLDHY---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAE 97
Query: 775 SL 776
L
Sbjct: 98 CL 99
Score = 38.0 bits (88), Expect = 0.009
Identities = 14/95 (14%), Positives = 30/95 (31%)
Query: 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRN 860
F+ + ++ ++ Q D A Y +D E ++
Sbjct: 43 VFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102
Query: 861 RQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLE 895
++ A + A ++ +F T + MLE
Sbjct: 103 GELAEAESGLFLAQELIANXPEFXELSTRVSSMLE 137
Score = 36.4 bits (84), Expect = 0.031
Identities = 9/91 (9%), Positives = 24/91 (26%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVT 875
A + + A +++ +DH + +L Q + A + +
Sbjct: 24 LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83
Query: 876 ILPRANQFWYKYTYMEEMLENVAGKLFVFHR 906
+ +F + +A
Sbjct: 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFL 114
Score = 30.7 bits (69), Expect = 2.8
Identities = 7/57 (12%), Positives = 14/57 (24%), Gaps = 3/57 (5%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ + Y A +P E +A A ++ + E
Sbjct: 71 YDLAIHSYSYGAVMDIX---EPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPE 124
>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110
kDa subunit...; thiocarbamate crosslink, covalent
inhibitor, gylcosyltransfe inhibitor, O-GLCNAC
transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A*
3pe4_A*
Length = 723
Score = 81.4 bits (200), Expect = 2e-15
Identities = 28/126 (22%), Positives = 54/126 (42%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
D N L + ++AV +R AL+V P+ + + L + L + +EA+ Y
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881
A+++SP F A N+G T + A++ + A+ A D + + +
Sbjct: 68 EAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNI 127
Query: 1882 SDSIWY 1887
++I
Sbjct: 128 PEAIAS 133
Score = 77.5 bits (190), Expect = 2e-14
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
++ + LY A P + L + + +A+ ++ A+++ P + ++
Sbjct: 25 IEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+G +L + A++ Y A+Q++P F A NL G +A+ + TAL
Sbjct: 82 NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL 138
Score = 74.1 bits (181), Expect = 4e-13
Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 3/184 (1%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWN 1801
Q+ L Y A R P+ D + +G + A+ C+ A+Q+ P + +
Sbjct: 59 LQEALMHYKEAIRISPT---FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Query: 1802 RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQ 1861
L + + EA+ +Y TAL+L P F A NL + T E ++
Sbjct: 116 NLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIV 175
Query: 1862 AATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQPEWDQEKSRAHDCS 1921
A + + P S + L IN+ +
Sbjct: 176 ADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVLHKPPYEHPKDLKLSD 235
Query: 1922 DDDD 1925
Sbjct: 236 GRLR 239
Score = 65.2 bits (158), Expect = 1e-10
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 22/204 (10%)
Query: 1636 PDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDT 1695
P +A+ +L E +A+ K L + P+ A ++ + L +AL
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 1696 LKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ 1755
K+ IR +P + + N L + Q L Y A +
Sbjct: 66 YKEAIR----ISPT--------FADAYSNMGNT-------LKEMQDVQGALQCYTRAIQI 106
Query: 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
P+ D + L + S +A+ +R+AL+++PD + L L +
Sbjct: 107 NPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163
Query: 1816 AVEAYHTALQLSPGFVRARYNLGI 1839
E + + + +
Sbjct: 164 YDERMKKLVSIVADQLEKNRLPSV 187
Score = 60.6 bits (146), Expect = 4e-09
Identities = 19/65 (29%), Positives = 26/65 (40%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
P + N L EEAV Y AL++ P F A NL G +A+ H
Sbjct: 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 65
Query: 1854 FLTAL 1858
+ A+
Sbjct: 66 YKEAI 70
Score = 60.2 bits (145), Expect = 6e-09
Identities = 46/334 (13%), Positives = 93/334 (27%), Gaps = 38/334 (11%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
L K QG++ A+ A + P+ A +L L + + +A+ + + I
Sbjct: 13 NNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 72
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLA 1726
P +A + + AL +I P ADA + LA
Sbjct: 73 SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAF----------ADA----HSNLA 118
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
+ + ++ Y A + P PD L + ++ +
Sbjct: 119 S-------IHKDSGNIPEAIASYRTALKLKPDF---PDAYCNLAHCLQIVCDWTDYDERM 168
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGA 1846
+ + + D NRL + + + + A + R+
Sbjct: 169 KKLVSIVADQLE-KNRLPSVHPHHSMLYPLSHGFRKA-------IAERHGNLCLDKINVL 220
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLT 1906
+ EH G + S+ G H P ++ L+
Sbjct: 221 HKPPYEHPKDLKLSDGRLRVGYVSSDFGNHPTSHL----MQSIPGMHNPDKFEVFCYALS 276
Query: 1907 QPEWDQEKSRAHDCSDDDDDPSGYQPCTKLHNLS 1940
+ + + ++ D S K +
Sbjct: 277 PDDGTNFRVKVMAEANHFIDLSQIPCNGKAADRI 310
Score = 45.2 bits (106), Expect = 2e-04
Identities = 22/170 (12%), Positives = 52/170 (30%), Gaps = 16/170 (9%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ + LY A P + L + + +A+ ++ A+++ P F +
Sbjct: 25 IEEAVRLYRKALEVFPE---FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYS 81
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD 830
+ ++L E++D Q + + I+ N A + +
Sbjct: 82 NMGNTL------------KEMQDVQGAL-QCYTRAIQINPAFADAHSNLASIHKDSGNIP 128
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRA 880
A + Y AL + + + V+I+
Sbjct: 129 EAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178
Score = 40.9 bits (95), Expect = 0.005
Identities = 30/161 (18%), Positives = 56/161 (34%), Gaps = 10/161 (6%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
Q L Y A + P+ D + L + S +A+ +R+AL+++PDF +
Sbjct: 93 VQGALQCYTRAIQINPA---FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYC 149
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVD 830
L L Q + D + + + D + KNR+ + + S
Sbjct: 150 NLAHCL------QIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGF-R 202
Query: 831 RARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWD 871
+A + L +D N+ Y + R +
Sbjct: 203 KAIAERHGNLCLDKINVLHKPPYEHPKDLKLSDGRLRVGYV 243
Score = 39.0 bits (90), Expect = 0.018
Identities = 29/149 (19%), Positives = 51/149 (34%), Gaps = 15/149 (10%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDE 790
D N L + ++AV +R AL+V P+F L S L Q+ E
Sbjct: 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL------QQQGKLQE 61
Query: 791 -LRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITL 849
L Y ++A IR + + + + V A Y RA+ ++
Sbjct: 62 ALMHY----KEA----IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADA 113
Query: 850 WLKYTELEMRNRQVNHARNLWDRAVTILP 878
+ + + A + A+ + P
Sbjct: 114 HSNLASIHKDSGNIPEAIASYRTALKLKP 142
Score = 30.5 bits (68), Expect = 7.3
Identities = 10/60 (16%), Positives = 19/60 (31%)
Query: 826 QKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
Q ++ A Y+ A+ + + + V A + RA+ I P
Sbjct: 56 QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHS 115
Score = 30.2 bits (67), Expect = 10.0
Identities = 8/33 (24%), Positives = 11/33 (33%)
Query: 1826 LSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P + NL G +AV + AL
Sbjct: 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKAL 36
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C
biogenesis, O157:H7 EDL933, formate- nitrite reductase
complex, lyase; 2.05A {Escherichia coli}
Length = 177
Score = 75.3 bits (185), Expect = 2e-15
Identities = 24/128 (18%), Positives = 50/128 (39%), Gaps = 6/128 (4%)
Query: 1736 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 1795
+S++ + L + R P + + LG + ++Y ++ +R ALQ+R +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76
Query: 1796 DSRLWNRLGASL---ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVE 1852
++ L+ L L A+ + + AL L + A L QA+E
Sbjct: 77 NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE 136
Query: 1853 HFLTALNQ 1860
+ ++
Sbjct: 137 LWQKVMDL 144
Score = 58.3 bits (141), Expect = 1e-09
Identities = 23/185 (12%), Positives = 49/185 (26%), Gaps = 53/185 (28%)
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+ Q + + + L+ + P N+E W LG ++ A + L + +N
Sbjct: 18 HQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTF 1732
E A L L + Q
Sbjct: 78 AELY----------AALATVLYYQASQHMTAQ---------------------------- 99
Query: 1733 RSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV 1792
+R + + L+L S + L + Y +A++ ++ + +
Sbjct: 100 -----TRAMIDKALAL----------DSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144
Query: 1793 RPDDS 1797
Sbjct: 145 NSPRI 149
Score = 53.7 bits (129), Expect = 6e-08
Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 4/83 (4%)
Query: 1598 EDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISL---AENEQ 1654
NP QN LG+ L Q D +++L A + +NAE++ +L L A
Sbjct: 38 RANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHM 96
Query: 1655 DPQAIAALSKCLSIEPKNLEALM 1677
Q A + K L+++ + ALM
Sbjct: 97 TAQTRAMIDKALALDSNEITALM 119
Score = 48.3 bits (115), Expect = 3e-06
Identities = 10/80 (12%), Positives = 20/80 (25%), Gaps = 3/80 (3%)
Query: 1603 QNETNAFALGQEKLRQGD---LPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
+N AL Q ++ A + + + L QAI
Sbjct: 76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAI 135
Query: 1660 AALSKCLSIEPKNLEALMAI 1679
K + + + +
Sbjct: 136 ELWQKVMDLNSPRINRTQLV 155
Score = 47.2 bits (112), Expect = 9e-06
Identities = 11/83 (13%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 1749 YLNAARQCPSQSIDPDVQNGLG-VLFNLSDEY--DKAVDCFRSALQVRPDDSRLWNRLGA 1805
Y A + + ++ L VL+ + ++ + AL + ++ L +
Sbjct: 67 YRQALQLRGE---NAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLAS 123
Query: 1806 SLANGNRPEEAVEAYHTALQLSP 1828
+A+E + + L+
Sbjct: 124 DAFMQANYAQAIELWQKVMDLNS 146
Score = 43.3 bits (102), Expect = 2e-04
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 47/174 (27%)
Query: 705 LSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPD 764
+S++ + L + R P + + LG + ++Y ++ +R ALQ+R +
Sbjct: 20 FASQQNPEAQLQALQDKIRANPQ---NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE 76
Query: 765 FTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEE 824
EL L + L +Q
Sbjct: 77 NAELYAALATVLYYQ--------------------------------------------A 92
Query: 825 SQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP 878
SQ + R++ ++AL +D IT + A LW + + +
Sbjct: 93 SQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146
Score = 37.2 bits (86), Expect = 0.022
Identities = 6/63 (9%), Positives = 22/63 (34%)
Query: 825 SQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFW 884
SQ+ + + + + +N W E + +++ + +A+ + + +
Sbjct: 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELY 81
Query: 885 YKY 887
Sbjct: 82 AAL 84
Score = 36.8 bits (85), Expect = 0.026
Identities = 13/82 (15%), Positives = 28/82 (34%), Gaps = 1/82 (1%)
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
VR + R + L + N PE ++A ++ +P LG + + +
Sbjct: 5 AVRAEYQRQRDPLHQFASQQN-PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63
Query: 1851 VEHFLTALNQQAATHDGLTPHG 1872
+ + AL + +
Sbjct: 64 LLAYRQALQLRGENAELYAALA 85
Score = 31.8 bits (72), Expect = 1.2
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 1110 LLRHLEAAAKQEPDNAEVWLSLGISLAENEQ 1140
L+ L+ + P N+E W LG
Sbjct: 29 QLQALQDKIRANPQNSEQWALLGEYYLWQND 59
Score = 29.8 bits (67), Expect = 5.2
Identities = 10/75 (13%), Positives = 20/75 (26%), Gaps = 11/75 (14%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLG--EFWEH---------NLGNMQQAFRM 1159
++ A + + + L E W+ N + ++ M
Sbjct: 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM 160
Query: 1160 DNLLAEMRDIEAASQ 1174
LL D+E
Sbjct: 161 AKLLQRRSDLEHHHH 175
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A
{Encephalitozoon cuniculi} PDB: 2uy1_B
Length = 493
Score = 74.5 bits (182), Expect = 1e-13
Identities = 16/113 (14%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 802 FEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMR-N 860
E+ + S +++A+ K S++ R L N+ LW+ Y E + +
Sbjct: 3 AEEKMGVELSSPSAIMEHARRLYMSKDYRSLESLFGRCLK-KSYNLDLWMLYIEYVRKVS 61
Query: 861 RQVNHARNLWDRAVTILP---RANQFWYKYTYMEEMLENVAGKLF----VFHR 906
++ +++ + + + +Y E +E+ ++ + R
Sbjct: 62 QKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMR 114
Score = 66.0 bits (160), Expect = 7e-11
Identities = 20/197 (10%), Positives = 53/197 (26%), Gaps = 17/197 (8%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLV 770
++ + + G++ + Y + +
Sbjct: 229 KEKAKKVVERGIEMSDG----MFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKE 284
Query: 771 YLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWE-ESQKQV 829
++ K + R K F + + + +I A E +
Sbjct: 285 LDLLRINHLNYVLKKRGLELFR-------KLFIE-LGNEGVGPHVFIYCAFIEYYATGSR 336
Query: 830 DRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTY 889
+I+ L + L ++ +R +AR L+ R + ++ W
Sbjct: 337 ATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIE 392
Query: 890 MEEMLENVAGKLFVFHR 906
E M+ ++ + +
Sbjct: 393 YEFMVGSMELFRELVDQ 409
Score = 62.6 bits (151), Expect = 8e-10
Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 9/155 (5%)
Query: 747 EYDKAVDCFRSALQVRPDFTELL--VYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFED 804
+K + + ALQ L + L+ K D L +Q ++ +
Sbjct: 104 RIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQI 163
Query: 805 NIRKNRMVISNWIKYAQWEESQKQ-------VDRARSIYERALDVDHRNITLWLKYTELE 857
+ N + E R I+ LD + ++ Y+E
Sbjct: 164 QPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYL 223
Query: 858 MRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEE 892
+ Q A+ + +R + + Y M+E
Sbjct: 224 IGIGQKEKAKKVVERGIEMSDGMFLSLYYGLVMDE 258
Score = 57.6 bits (138), Expect = 3e-08
Identities = 13/106 (12%), Positives = 32/106 (30%), Gaps = 5/106 (4%)
Query: 797 RKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTEL 856
F + K+ ++ + + AR++++R + +W E
Sbjct: 338 TPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEY 393
Query: 857 EMRNRQVNHARNLWDRAVTILPRANQFW-YKYTYMEEMLENVAGKL 901
E + R L D+ + + +E + G+
Sbjct: 394 EFMVGSMELFRELVDQKMDAIKADAILPPLPPREHNVQMEGILGRY 439
Score = 56.4 bits (135), Expect = 7e-08
Identities = 14/167 (8%), Positives = 39/167 (23%), Gaps = 10/167 (5%)
Query: 744 LSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFE 803
+ + Q ++ + R ++ R
Sbjct: 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN-GMKLGGRPHESRMHFIHN 203
Query: 804 DNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQV 863
+ + Y+++ Q ++A+ + ER +++ + L L Y +
Sbjct: 204 YILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDG-MFLSLYYGLVMDEEAVY 262
Query: 864 NHARNLWDRAVTILPRANQ------FWYKYTYMEEMLENV--AGKLF 902
+ + + + KLF
Sbjct: 263 GDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLF 309
Score = 55.6 bits (133), Expect = 1e-07
Identities = 21/165 (12%), Positives = 58/165 (35%), Gaps = 25/165 (15%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFE-- 803
+Y F L+ + ++Y+ ++ ++ +L + +E
Sbjct: 28 KDYRSLESLFGRCLKKSYNLDLWMLYI----EYV--RKVSQKKFKLY-------EVYEFT 74
Query: 804 -DNIRKNRMVISNWIKY----AQWEESQKQVDRARSIYERALDVDHRNI-TLWLKYTELE 857
+ +Y + E+ Q ++++ R+ Y RAL ++ LW + E
Sbjct: 75 LGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE 134
Query: 858 MRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEEMLENVAGKLF 902
+ ++ + + D P + +Y ++ ++ + K
Sbjct: 135 LELNKITGKKIVGDTL----PIFQSSFQRYQQIQPLIRGWSVKNA 175
Score = 40.2 bits (93), Expect = 0.006
Identities = 12/132 (9%), Positives = 38/132 (28%), Gaps = 22/132 (16%)
Query: 797 RKRKAFEDNIRKNRMVISN-WIKYAQWEESQKQVDRARSIYERALD-------------- 841
+ R + ++ +S W + +E ++ + + +
Sbjct: 107 KIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPL 166
Query: 842 VDHRNITLWLKYTELEMRNRQ-------VNHARNLWDRAVTILPRANQFWYKYTYMEEML 894
+ ++ + +LEM N + + + + A + ++ Y+ +
Sbjct: 167 IRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGI 226
Query: 895 ENVAGKLFVFHR 906
V R
Sbjct: 227 GQKEKAKKVVER 238
Score = 37.9 bits (87), Expect = 0.033
Identities = 17/102 (16%), Positives = 31/102 (30%), Gaps = 19/102 (18%)
Query: 742 FNLSDEYDKAVDCFRSALQVRPDFTEL-LVYLFSSLDFQPPKQKISDPDELRDYQHRKRK 800
+ + + F S L PD T L + F +I D + R R K
Sbjct: 330 YYATGSRATPYNIFSSGLLKHPDSTLLKEEFF----LFL---LRIGDEENARALFKRLEK 382
Query: 801 AFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV 842
W ++E ++ R + ++ +D
Sbjct: 383 TSRM-----------WDSMIEYEFMVGSMELFRELVDQKMDA 413
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.5 bits (185), Expect = 2e-13
Identities = 101/583 (17%), Positives = 185/583 (31%), Gaps = 192/583 (32%)
Query: 638 TLESPHFEY-FDITGIDPVITIF----LSEFFSK--PVDTPGQESNPRPS---------- 680
TL E+ + P + F L E F+K P T G ++ P+
Sbjct: 10 TLSHGSLEHVLLV----PTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 681 ---AHKADALP-SKLTRLANHTLT-FRSP-LSSREIH-----------------QQVLSL 717
+ + + ++ N LT F + L +IH ++++
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN 125
Query: 718 YLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSAL--QVRPDFTELLVYLFSS 775
Y+ AR + D + L FR+ + LV +F
Sbjct: 126 YI-TARIMAKRPFDKKSNSAL----------------FRAVGEGNAQ------LVAIFGG 162
Query: 776 LDFQPPKQKISDP--DELRD----YQHRKRKAFEDNIRKNRMVISNWIKYA--QWEESQK 827
Q +D +ELRD Y ++ + IK++ E +
Sbjct: 163 -------QGNTDDYFEELRDLYQTYHV---------------LVGDLIKFSAETLSELIR 200
Query: 828 QVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILP--RANQF-W 884
A ++ + L++ WL+ + ++ P Q
Sbjct: 201 TTLDAEKVFTQGLNILE-----WLENPSNTPDKDYLLSI------PIS-CPLIGVIQLAH 248
Query: 885 YKYT------YMEEMLENVAGKLFVFHRDSISQVTLWLGALTLSLEGLGSNLQSWVRFLA 938
Y T E+ + G + ++ V + A T S E +++ + L
Sbjct: 249 YVVTAKLLGFTPGELRSYLKG-ATGHSQGLVTAVAI---AETDSWESFFVSVRKAITVLF 304
Query: 939 RDVGECCCGQVVSTV--------DSEVGG-------LSSKGL----IEGTVT-TPSYLPE 978
+G C + DS LS L ++ V T S+LP
Sbjct: 305 F-IG-VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA 362
Query: 979 IQ--EKSRQDSSRKPVV--PRTNL--ICLGLSSSRA-TGSVPSR---SENEPYLFRIKFI 1028
+ E S + ++ VV P +L + L L ++A +G SR SE + F +F+
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK-FSNRFL 421
Query: 1029 PGDLKSRMVLYPNKLTKFHSNRMSGLARHKVRNHKQTNIHFYILKNTVAIELIPQSRLRF 1088
P V P FHS+ + A + ++KN V+ ++
Sbjct: 422 P-------VASP-----FHSHLLVP-ASDLINKD--------LVKNNVS---FNAKDIQI 457
Query: 1089 -VYCGTF-----QNMCPMLEGDLVQSFLLR---HLEAAAKQEP 1122
VY TF + + + +V ++R E + +
Sbjct: 458 PVYD-TFDGSDLRVLSGSISERIVDC-IIRLPVKWETTTQFKA 498
Score = 62.4 bits (151), Expect = 2e-09
Identities = 74/490 (15%), Positives = 143/490 (29%), Gaps = 165/490 (33%)
Query: 38 RPYT--HE--ENSF---ANAHP--DQLLGEFWEHNLGNMQQAFRMDNLLAEMRDIEAASQ 88
RP T H E+ + QL +F L + F D+
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQF-NKILPEPTEGFAADD------------- 52
Query: 89 RPKPQQSAPISLLAR---------QDDAREWANQFLEAG-SHFEHTPPETIWDNAPIMRG 138
+ + P L+ + + +Q L + FE+ + G
Sbjct: 53 ----EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC----------YLEG 98
Query: 139 SEI------LPQEDLGGLQLGFGPQWCSEFLR----TSEP--------LLDNTQEELTNL 180
++I L QE+ L + ++ P L E L
Sbjct: 99 NDIHALAAKLLQENDTTLVKTK--ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 181 RAL------SEDYSSDANKADSNQNNILLNALKTTAEDSVKTLDQNPDMKQSKLLKFMSN 234
A+ ++DY + L L T V L + ++ L +
Sbjct: 157 VAIFGGQGNTDDYFEE------------LRDLYQTYHVLVGDLIKF----SAETLSELIR 200
Query: 235 VATDGTPVLSDPEAATVQQWGSEYQSTTSPEHQWESAFLGQNASVFDLPPRYGPILFCVS 294
D V + + +W P + + +L S+ P +S
Sbjct: 201 TTLDAEKVF--TQGLNILEWLEN------PSNTPDKDYL---LSI---P---------IS 237
Query: 295 FQWINEVKFITLLTLC-LIIEVNQHGF----VRARYNLGITCVHLG-------ANTQAVE 342
I ++ L ++ GF +R+ G T G A T + E
Sbjct: 238 C------PLIGVIQLAHYVVTAKLLGFTPGELRSYLK-GATGHSQGLVTAVAIAETDSWE 290
Query: 343 HFLTALN-------------QQAAAHDGLTPHGLE---PRADGL-TP----HGLEPRAVK 381
F ++ +A + L P LE +G+ +P L V+
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 382 EMSDSIWYSL----RVVLSVLNRSDLHHCVTNSPACISAKALLTVVSS--SISYPPPHIN 435
+ + L +V +S++N + V+ P ++L + + P ++
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVN-GAKNLVVSGPP-----QSLYGLNLTLRKAK-APSGLD 403
Query: 436 LTQPEWDQEK 445
++ + + K
Sbjct: 404 QSRIPFSERK 413
Score = 61.6 bits (149), Expect = 3e-09
Identities = 116/726 (15%), Positives = 185/726 (25%), Gaps = 274/726 (37%)
Query: 83 IEAASQRP------KPQQSAPISLLARQDDAREW--ANQFLEAGSHFEHTPPETIW-DNA 133
++A S RP + + + A+Q E + P E D+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVP-------TASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 134 PIMRGSEILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTN-LRALSEDYSSDAN 192
P + +L G LG+ S + S+ + L L Y
Sbjct: 54 PT---TPA----ELVGKFLGY----VSSLVEPSKV--GQFDQVLNLCLTEFENCYLEG-- 98
Query: 193 KADSNQNNILLNALKTTAEDSVKTLDQNPDMKQSKLLKFMSN----VATDGTPVLSDPEA 248
N+I +AL L Q D K + + N P +
Sbjct: 99 ------NDI--HAL-------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 249 ATVQQWGSEYQSTTSPEHQWESAFLGQNASVFDLPPRYGPILFCVSFQWINEVKFITLLT 308
A +++ Q + F GQ G + E
Sbjct: 144 AL-------FRAVGEGNAQLVAIFGGQ-----------GNTD-----DYFEE-------- 172
Query: 309 LCLIIEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAH-DGLTPHGLEPRA 367
L R Y + L + +A L A
Sbjct: 173 --L----------RDLYQTY-------------HVLVGDLIKFSAETLSELIRT--TLDA 205
Query: 368 DGLTPHGLEPRAVKEMSDSIWYSLRVVLSVLNRSDLHHCVTNSPACISAKALLTVVSSSI 427
+ + GL W L + P+ K L +S I
Sbjct: 206 EKVFTQGLNILE--------W--------------LEN-----PSNTPDKDYL--LSIPI 236
Query: 428 SYPPPHINLTQPEWDQEKSAAR---DCSNDDPSGYQPCTKLHNLSGVLGTVHLTYHCALG 484
S P I + Q A G+ P L G G
Sbjct: 237 SCPL--IGVIQ--------LAHYVVTAKL---LGFTPGELRSYLKGATG----------- 272
Query: 485 SHTKAKWYIVHIEYNNTLVFGRIL--SDSSKSRFEDVVAIQELLFCLGLH-----PHFEL 537
H++ LV + +DS +S F V +LF +G+ P+ L
Sbjct: 273 -HSQG------------LVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSL 319
Query: 538 ---------KNEEKKVITKWTIISTQLISWSKLCSDTKGAKYDSAV-MCNRNLPLFVNFP 587
+N E + + ++S S+ + V N +LP
Sbjct: 320 PPSILEDSLENNEG--------VPSPMLS----ISNLTQEQVQDYVNKTNSHLPA----G 363
Query: 588 KHVP----NARRSVNKQFYITANAENRYKVYDDEYLCRVLEATVFTPAKFIQEETLESPH 643
K V N + ++ ++ Y L L P+ Q P
Sbjct: 364 KQVEISLVNGAK----NLVVSGPPQSLYG------LNLTLRK-AKAPSGLDQSRI---PF 409
Query: 644 FEYFDITGIDPVITI-FLSEFFSKPVDTPGQESNPRPSAHKADALPSKLTRLANHTLTFR 702
E + FL PV +P S A L + ++F
Sbjct: 410 SER------KLKFSNRFL------PVASPFH------SHLLVPASDLINKDLVKNNVSFN 451
Query: 703 S-----P------------LSS---REIHQQVLSLYLN--AARQCPSQSI---DPDVQNG 737
+ P LS I ++ L + Q + I P +G
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 738 LGVLFN 743
LGVL +
Sbjct: 512 LGVLTH 517
Score = 60.1 bits (145), Expect = 9e-09
Identities = 104/651 (15%), Positives = 185/651 (28%), Gaps = 232/651 (35%)
Query: 838 RALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTYMEE---ML 894
R L + H ++ L + A L ++ ILP + + +E
Sbjct: 7 RPLTLSHGSLE-----HVLLVPTASFFIASQLQEQFNKILPEPTE---GFAADDEPTTPA 58
Query: 895 ENVAGKL-FVFHRDSISQVTLWLGALTLSLEGLGSNLQSWVRFLA-RDVGECCCGQVVST 952
E V L +V S+V + L L L + +L D+ + +
Sbjct: 59 ELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENC------YLEGNDIH-----ALAAK 107
Query: 953 VDSEVGG--LSSKGLIEGTVTTPSYLPEIQEKSRQDSSRKPVVPRTNLICLGLSSSRAT- 1009
+ E + +K LI+ +Y+ +R + R + + + A
Sbjct: 108 LLQENDTTLVKTKELIK------NYI-----TARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 1010 -------GSVPSRSENEPYLFRIKFIPGDLKSRMVLYP---NKLTKFHSNRMSGLARHKV 1059
G+ + Y +L+ Y L KF + +S L R +
Sbjct: 157 VAIFGGQGN------TDDYF-------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTL 203
Query: 1060 RNHK--QTNIHFYI-LKNTVAIELIPQSRLRFVYCGTFQNMCPMLEGDLVQSFLLRHLEA 1116
K ++ L+N P + Y + CP++ ++Q L H
Sbjct: 204 DAEKVFTQGLNILEWLEN-------PSNTPDKDYLLSIPISCPLIG--VIQ---LAHYVV 251
Query: 1117 AAKQ---EPDN------------AEVWLSLGISLAENEQLLGEFWEHNLGNMQQAFRMDN 1161
AK P + ++ I+ ++ WE ++++A +
Sbjct: 252 TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDS-------WESFFVSVRKAITV-- 302
Query: 1162 LLAEMRDIEAASQRPKPQQSAPISLLARQDDARE----------------------WANQ 1199
L I P S P S+L + E N
Sbjct: 303 LFF----IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 1200 FLEAGSHFE---HTPPETIWDNAP---IMRGSEILPQEDLGGLQLGF------------- 1240
L AG E N ++ G P + L GL L
Sbjct: 359 HLPAGKQVEISLV--------NGAKNLVVSG----PPQSLYGLNLTLRKAKAPSGLDQSR 406
Query: 1241 ------GPQWCSEFLRTSEP----LLDNTQEELTNLRALSEDYSSDANKADSNQNNILLN 1290
++ + FL + P LL + + D +NN+ N
Sbjct: 407 IPFSERKLKFSNRFLPVASPFHSHLLVPASDLI---------------NKDLVKNNVSFN 451
Query: 1291 A--LKTTAEDSVKTLDQNPDMKQSKLLKFMSNVATDGTPVLSDPEAATVQQWGSEFQSTT 1348
A ++ D T D + D++ ++ + + D
Sbjct: 452 AKDIQIPVYD---TFDGS-DLR---------VLSGSISERIVD-------------CIIR 485
Query: 1349 SPEHQWESA----------F-------LG----QNASGTTSGVSTSGTVDK 1378
P WE+ F LG +N GT V +GT+D
Sbjct: 486 LPVK-WETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTLDI 535
Score = 58.5 bits (141), Expect = 2e-08
Identities = 104/644 (16%), Positives = 190/644 (29%), Gaps = 219/644 (34%)
Query: 755 FRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVIS 814
F A Q++ F ++L P + + DE ++
Sbjct: 27 FFIASQLQEQFNKIL---------PEPTEGFAADDEPTTPAE---------------LVG 62
Query: 815 NWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNH--ARNLWDR 872
++ Y +V + + L + + H A L
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCY----------LEGNDI-HALAAKLLQE 111
Query: 873 AVTILPRANQFWYKYTYMEEMLEN------VAGKLFVFHRDSISQVTLWLGALTLSLEGL 926
T L + + K ++ LF + +Q+ G G
Sbjct: 112 NDTTLVKT-KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-------GQ 163
Query: 927 GSN------LQ-------SWVRFLARDVGECCCGQVVSTVDSEV---GGLSSKGLIEGTV 970
G+ L+ V L + E + +T+D+E GL+ +E
Sbjct: 164 GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 971 TTPS--YLPEIQEKSRQDSSRKPV-VPRTNLICLG-----LSSSRATGSVPSRSENEPYL 1022
TP YL S P+ P LI + + +++ G
Sbjct: 224 NTPDKDYL---------LSI--PISCP---LIGVIQLAHYVVTAKLLG------------ 257
Query: 1023 FRIKFIPGDLKSRMVLYPNKLTK-------------------FHSNRMS--------GLA 1055
F PG+L+S + T F + G+
Sbjct: 258 ----FTPGELRSYL----KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 1056 RHKVRNHKQTNIHFYILKNTVAI-ELIPQSRLRFVYCGTFQNMCPMLE-GDLVQSFLLRH 1113
++ + T++ IL++++ E +P PML +L Q + +
Sbjct: 310 CYEAYPN--TSLPPSILEDSLENNEGVP---------------SPMLSISNLTQEQVQDY 352
Query: 1114 LEAAAKQEPDNAEVWLSLGISLAEN-------EQLLGEFWEHNLGNMQQAFRMDNLLAEM 1166
+ P +V +SL A+N + L G L +
Sbjct: 353 VNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYG------------------LNLTL 393
Query: 1167 RDIEAASQRPKPQQS-APISLLARQDDAREWANQFLEAGSHFEHTPPETIWDNAPIMRGS 1225
R +A QS P S R+ +++N+FL S F H+ ++ +
Sbjct: 394 RKAKAP---SGLDQSRIPFS--ERK---LKFSNRFLPVASPF-HS---------HLLVPA 435
Query: 1226 EILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTNLRALSEDYSSDANKADSNQN 1285
L +DL + + ++ ++ P+ D +LR LS S
Sbjct: 436 SDLINKDLVKNNV----SFNAKDIQI--PVYDTFDGS--DLRVLSGSISERIVDC----- 482
Query: 1286 NILLNAL---KTTAEDSVKTLDQNPDMKQSKLLKFMSNVATDGT 1326
I+ + TT + LD P S L +++ DGT
Sbjct: 483 -IIRLPVKWETTTQFKATHILDFGPG-GASGLGV-LTHRNKDGT 523
Score = 56.2 bits (135), Expect = 1e-07
Identities = 100/602 (16%), Positives = 170/602 (28%), Gaps = 216/602 (35%)
Query: 1511 NLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTS----GTVDKPEPALWNELNSHWKEMTES 1566
+ +S R L +S G+ V T+ + L + N E TE
Sbjct: 2 DAYST-RPLTLSH-------GSLEHVLLVPTASFFIASQ------LQEQFNKILPEPTEG 47
Query: 1567 LGSGE---SLPHQW--FSDF--------SRNQRSSVSMHEYTFAEDNPMQ-NETNAFALG 1612
+ + + F + Q V T E+ ++ N+ +A A
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAK 107
Query: 1613 QEKLRQGDLPSA--IL--YLEA--AAKQEPDNAEVWLSLGISLAENEQDPQA-IAAL--- 1662
+ L ++ Y+ A AK+ D S +L + A + A+
Sbjct: 108 LLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN--S---ALFRAVGEGNAQLVAIFGG 162
Query: 1663 ----SKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNP---------- 1708
E L L + + +TL + IR ++
Sbjct: 163 QGNTDDYFE-E---LRDLYQTYHVLV-GDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 1709 -------RPS-AYKADA---LP-SKLTRLANHTLT----------FRSPLSSREIHQQVL 1746
P Y P + +LA++ +T RS L H Q L
Sbjct: 218 WLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL 277
Query: 1747 -------------SLYLNAAR----------QC----PSQSIDPD-----VQNGLGV--- 1771
S +++ + +C P+ S+ P ++N GV
Sbjct: 278 VTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSP 337
Query: 1772 ---LFNLSDEY-DKAVDCFRSALQVRPDDSRLWNRLGASLANGNR------PEEAVEAYH 1821
+ NL+ E V+ S L P ++ SL NG + P +++ +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHL---PAGKQV----EISLVNGAKNLVVSGPPQSLYGLN 390
Query: 1822 TALQ--------------LS---PGFVRARYNLGITC-VH---LGANTQAVEHFLTALNQ 1860
L+ S F R+ L + H L A + L +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFS-NRF-LPVASPFHSHLL---VPASDLINKDLVK 445
Query: 1861 QA-------------ATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINLTQ 1907
T DG SD LR +++ +
Sbjct: 446 NNVSFNAKDIQIPVYDTFDG--------------SD-----LRVLSGSISERIVDCIIRL 486
Query: 1908 P-EWDQE-KSRA-H--DCSDDDDDPSGYQPCTKL--HNLSG------VLGTVHLTYQCST 1954
P +W+ + +A H D P G L N G V GT+ +
Sbjct: 487 PVKWETTTQFKATHILDF-----GPGGASGLGVLTHRNKDGTGVRVIVAGTLDINPDDDY 541
Query: 1955 GF 1956
GF
Sbjct: 542 GF 543
Score = 52.4 bits (125), Expect = 2e-06
Identities = 109/716 (15%), Positives = 188/716 (26%), Gaps = 265/716 (37%)
Query: 1169 IEAASQRP------KPQQSAPISLLARQDDAREW--ANQFLEAGSHFEHTPPETIW-DNA 1219
++A S RP + + + A+Q E + P E D+
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVP-------TASFFIASQLQEQFNKILPEPTEGFAADDE 53
Query: 1220 PIMRGSEILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTN-LRALSEDYSSDAN 1278
P + +L G LG+ S + S+ + L L Y
Sbjct: 54 PT---TPA----ELVGKFLGY----VSSLVEPSKV--GQFDQVLNLCLTEFENCYLEG-- 98
Query: 1279 KADSNQNNILLNALKTTAEDSVKTLDQNPDMKQSKLLKFMSN----VATDGTPVLSDPEA 1334
N+I +AL L Q D K + + N P +
Sbjct: 99 ------NDI--HAL-------AAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS 143
Query: 1335 ATVQQWGSEFQSTTSPEHQWESAFLGQNASGTTSGVSTSGTVDKPEPALWNELNSHWKEM 1394
A F++ Q + F GQ G D + EL ++
Sbjct: 144 AL-------FRAVGEGNAQLVAIFGGQ------------GNTDDY----FEELRDLYQTY 180
Query: 1395 TESLG-----SGESLPHQWFSDFSRNQRSSVSMHVSLVFDLRPRYGPILFCVSFQWINE- 1448
+G S E+L S+ R + + + ++ +W+
Sbjct: 181 HVLVGDLIKFSAETL-----SELIRTTLDAEKVF-TQGLNIL------------EWLENP 222
Query: 1449 -----VKFITLCLI----IEVNQ--HGIHICGRQSYAERNQCFCFGPGKAQTGPLFSNGV 1497
++ I I V Q H + + F PG+ +
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTA---------KLLGFTPGELR--------- 264
Query: 1498 ASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNELN 1557
+ +G ++ T ++ + + W
Sbjct: 265 ------------------SYLKGATGHSQG-LV----TAVAIAETDS--------WESFF 293
Query: 1558 SHWKEMTESL---GSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDN----PMQNETNAFA 1610
++ L G ++ + + S S+ E + + PM
Sbjct: 294 VSVRKAITVLFFIGV-RC--YEAYPNTS----LPPSILEDSLENNEGVPSPM-------- 338
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQD-------PQAIAALS 1663
L L Q + + P +V ISL N PQ++ L+
Sbjct: 339 LSISNLTQEQVQDYV---NKTNSHLPAGKQV----EISLV-NGAKNLVVSGPPQSLYGLN 390
Query: 1664 KCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPR----------P--S 1711
L A S LD + +I P E + P S
Sbjct: 391 L-------TLRKAKAPS-----------GLD--QSRI-PFSERKLKFSNRFLPVASPFHS 429
Query: 1712 AYKADALPSKLTRLANHTLTFRS-----P------------LSS---REIHQQVLSLYLN 1751
A L + ++F + P LS I ++ L +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 1752 --AARQCPSQSI---DPDVQNGLGVLFNLSDEYDKAVD--CFR----SALQVRPDD 1796
Q + I P +GLGVL + + D R L + PDD
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTH------RNKDGTGVRVIVAGTLDINPDD 539
Score = 49.3 bits (117), Expect = 2e-05
Identities = 60/352 (17%), Positives = 107/352 (30%), Gaps = 153/352 (43%)
Query: 1382 ALWNELNSHWKEMTESLGSGESLPHQWFS--DFSRNQRSSVSMHVSLVFD------LRPR 1433
+WN ++H+K+ + G FS D N ++++H F +R
Sbjct: 1644 DVWNRADNHFKD---TYG---------FSILDIVINNPVNLTIH----FGGEKGKRIREN 1687
Query: 1434 YGPILFCVSFQWINEVKFITLCLIIEVNQHGIHICGRQSYAERNQCFCF-GPGKAQTGPL 1492
Y ++F + I + K T + E+N E + + F G L
Sbjct: 1688 YSAMIF----ETIVDGKLKTEKIFKEIN-------------EHSTSYTFRSE----KGLL 1726
Query: 1493 FSNGVASINQQPVPNTNGNLHSLDRTLAVSK-LF-----KGPIIGTPSTTSGVSTSGTVD 1546
A+ QP +L + K F KG +I +T +G
Sbjct: 1727 S----ATQFTQP---------AL---TLMEKAAFEDLKSKG-LIPADATFAG-------- 1761
Query: 1547 KPEPALWNELNSHWKEMTESLG-------SGESLPHQWFSD-----FSR-------NQRS 1587
H SLG + + F R R
Sbjct: 1762 ------------H------SLGEYAALASLADVMS---IESLVEVVFYRGMTMQVAVPRD 1800
Query: 1588 SVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ-----EP--DNAE 1640
+ Y NP + A + QE L+ +E K+ E N E
Sbjct: 1801 ELGRSNYGMIAINPGRV---AASFSQEALQY--------VVERVGKRTGWLVEIVNYNVE 1849
Query: 1641 VWLSLGISLAENEQ-----DPQAIAALSKCLS-IEPKNLEALMAISICFTNE 1686
N+Q D +A+ ++ L+ I+ + ++ ++ + + E
Sbjct: 1850 -----------NQQYVAAGDLRALDTVTNVLNFIKLQKID-IIELQKSLSLE 1889
Score = 41.2 bits (96), Expect = 0.004
Identities = 42/221 (19%), Positives = 69/221 (31%), Gaps = 98/221 (44%)
Query: 1551 ALWNELNSHWKEMTESLGSGESLPHQWFS--DFSRNQRSSVSMHE--------------- 1593
+WN ++H+K ++ G FS D N ++++H
Sbjct: 1644 DVWNRADNHFK---DTYG---------FSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 1594 -YTFAEDNPMQNETNAFALGQEKLR-------QGDL-------PSAILYLEAAAKQEPDN 1638
+ D ++ E F E +G L P A+ +E AA
Sbjct: 1692 IFETIVDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQFTQP-ALTLMEKAA------ 1743
Query: 1639 AEVWLSLGI----------SLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEAC 1688
E S G+ SL E A+A+L+ +SIE
Sbjct: 1744 FEDLKSKGLIPADATFAGHSLGEY----AALASLADVMSIE------------------- 1780
Query: 1689 LHDALDTLKDKIRPG---QESNPR----PSAYKADAL-PSK 1721
++ + R G Q + PR S Y A+ P +
Sbjct: 1781 --SLVEVV--FYR-GMTMQVAVPRDELGRSNYGMIAINPGR 1816
Score = 39.3 bits (91), Expect = 0.018
Identities = 45/283 (15%), Positives = 76/283 (26%), Gaps = 119/283 (42%)
Query: 60 WEHNLGNMQQAFRMDNLLAEMRDIEAASQRPKPQQSAPISLLARQDDARE---------- 109
WE ++++A + L I P S P S+L + E
Sbjct: 289 WESFFVSVRKAITV--LFF----IGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSIS 342
Query: 110 ------------WANQFLEAGSHFE---HTPPETIWDNAP---IMRGSEILPQEDLGGLQ 151
N L AG E N ++ G P + L GL
Sbjct: 343 NLTQEQVQDYVNKTNSHLPAGKQVEISLV--------NGAKNLVVSG----PPQSLYGLN 390
Query: 152 LGF-------------------GPQWCSEFLRTSEP----LLDNTQEELTNLRALSEDYS 188
L ++ + FL + P LL + +
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI----------- 439
Query: 189 SDANKADSNQNNILLNA--LKTTAEDSVKTLDQNPDMKQSKLLKFMSNVATDGTPVLSDP 246
D +NN+ NA ++ D T D + D++ ++ + + D
Sbjct: 440 ----NKDLVKNNVSFNAKDIQIPVYD---TFDGS-DLR---------VLSGSISERIVD- 481
Query: 247 EAATVQQWGSEYQSTTSPEHQWESAFLGQNAS-VFDLPPRYGP 288
P WE+ A+ + D +GP
Sbjct: 482 ------------CIIRLPVK-WETT-TQFKATHILD----FGP 506
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics,
PSI-2, protein structure initiative; 2.80A {Salinibacter
ruber} PDB: 2kcl_A 2kcv_A
Length = 100
Score = 66.1 bits (162), Expect = 4e-13
Identities = 13/72 (18%), Positives = 28/72 (38%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
DP + L D +A+ F ++ PD + LG +R ++A++ Y
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65
Query: 1822 TALQLSPGFVRA 1833
++++
Sbjct: 66 QGIEVAREEGTQ 77
Score = 60.7 bits (148), Expect = 3e-11
Identities = 12/88 (13%), Positives = 28/88 (31%), Gaps = 8/88 (9%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
P+D L + A+ + ++ P +V Y+LG L A++
Sbjct: 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDT 63
Query: 1854 FLTALNQQAATHDGLTPHGLEPRAVKEM 1881
+ + + + + E+
Sbjct: 64 YAQGIE--------VAREEGTQKDLSEL 83
Score = 58.4 bits (142), Expect = 2e-10
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 3/77 (3%)
Query: 1602 MQNETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQA 1658
M++ + F L QE L+ + A+ E + +PD + LG ++ A
Sbjct: 1 MEDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDA 60
Query: 1659 IAALSKCLSIEPKNLEA 1675
I ++ + + +
Sbjct: 61 IDTYAQGIEVAREEGTQ 77
Score = 38.0 bits (89), Expect = 0.003
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
DP + L D +A+ F ++ PD+
Sbjct: 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG 42
Score = 33.0 bits (76), Expect = 0.15
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 729 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
DPD LG L+ D D A+D + ++V +
Sbjct: 35 ETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76
Score = 31.1 bits (71), Expect = 0.75
Identities = 6/32 (18%), Positives = 11/32 (34%)
Query: 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P RY L + ++A+ F +
Sbjct: 3 DPEDPFTRYALAQEHLKHDNASRALALFEELV 34
Score = 30.3 bits (69), Expect = 1.7
Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 14/62 (22%)
Query: 1111 LRHLEAAAKQEPDNAEVWLSLGISLAENEQLLG--EFWE------------HNLGNMQQA 1156
L E + +PD + LG ++ + + +L +Q A
Sbjct: 27 LALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA 86
Query: 1157 FR 1158
Sbjct: 87 KL 88
Score = 29.5 bits (67), Expect = 3.0
Identities = 5/36 (13%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 323 ARYNLGITCVHLGANTQAVEHFLTALNQQ---AAAH 355
RY L + ++A+ F + +
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTY 44
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle
orientation, asymmetric CEL divisions; 2.10A {Drosophila
melanogaster}
Length = 411
Score = 71.9 bits (177), Expect = 6e-13
Identities = 50/295 (16%), Positives = 95/295 (32%), Gaps = 65/295 (22%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDN----AEVWLSLGISLAENEQDPQAIAALSKCL 1666
G+ GD + + + +AA + ++ + ++ LG + +A+ L
Sbjct: 54 EGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113
Query: 1667 SIEPKNLEALMAISICFTN------------EA--CLHDALD---TLKDKIRPGQESNPR 1709
++ K++ + + N EA C L L D+ +
Sbjct: 114 TLA-KSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR--LSE----- 165
Query: 1710 PSAYKADALPSKL----TRLANHTLTFRSPLSSR----------EIHQQVLSLYLNAARQ 1755
AL L H E +Q+ L L + +
Sbjct: 166 -----GRAL-YNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219
Query: 1756 CPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLAN 1809
+Q LG + L ++ A++ + L++ R + R + LG S
Sbjct: 220 -GAQG---RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF 275
Query: 1810 GNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ E+A E Y L L+ ++ Y+LG T L A+E+ L
Sbjct: 276 LGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHL 330
Score = 65.8 bits (161), Expect = 6e-11
Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 13/130 (10%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDV---QNGLGVLFNLSDEYDKAVDCFRSALQVRPDD-- 1796
+ + ++Q + G + + V F++A+Q +D
Sbjct: 24 GGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR 83
Query: 1797 --SRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANT 1848
S ++++LG + +A++ + L L+ G ++ NLG T +G
Sbjct: 84 TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFD 143
Query: 1849 QAVEHFLTAL 1858
+A L
Sbjct: 144 EAAICCERHL 153
Score = 64.2 bits (157), Expect = 2e-10
Identities = 48/287 (16%), Positives = 104/287 (36%), Gaps = 47/287 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA---AKQ---EPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG GD A+ Y + AK A+ +LG +L + +A +
Sbjct: 92 LGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCER 151
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDAL-DTLKDKIRPGQESNPRPSAYKA-----DAL 1718
L++ + L ++ N ++ A L + + + + +A + L
Sbjct: 152 HLTLA-RQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENL 210
Query: 1719 PSKLTR-LANHTLTFRSPLSS--------------REIHQQVLSLYLNAARQCPSQSIDP 1763
KL R L + R+ + E HQ+ L + R+ ++ +
Sbjct: 211 --KLMRDLGDRGAQGRA-CGNLGNTYYLLGDFQAAIEHHQERLRIA----REFGDRAAER 263
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAV 1817
+ LG +++ A + ++ L + R +++ LG + + A+
Sbjct: 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAI 323
Query: 1818 EAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
E ++ L ++ G RA ++LG +G + +A+++ L
Sbjct: 324 EYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370
Score = 63.1 bits (154), Expect = 4e-10
Identities = 45/287 (15%), Positives = 72/287 (25%), Gaps = 81/287 (28%)
Query: 1607 NAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENEQDPQAIA 1660
+A A L G + ++Q G L +A
Sbjct: 10 SASAENVSSLGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVA 69
Query: 1661 ALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPS 1720
+ ++L +S ++ + L G Y A+
Sbjct: 70 FFQAAIQAGTEDLRT---LSAIYSQLGNAYFYL---------GD--------YN-KAM-- 106
Query: 1721 KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYD 1780
+ H+ L+L + + ++ LG + +D
Sbjct: 107 -------------------QYHKHDLTLAKSMNDR-LGEA---KSSGNLGNTLKVMGRFD 143
Query: 1781 KAVDCFRSALQV------RPDDSRLWNRLG-----------------ASLANGNRPEEAV 1817
+A C L + R + R LG AV
Sbjct: 144 EAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAV 203
Query: 1818 EAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
E Y L+L RA NLG T LG A+EH L
Sbjct: 204 EFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERL 250
Score = 53.5 bits (129), Expect = 5e-07
Identities = 14/99 (14%), Positives = 24/99 (24%), Gaps = 10/99 (10%)
Query: 1778 EYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS---- 1827
+ Q G L N V + A+Q
Sbjct: 23 SGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL 82
Query: 1828 PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
LG +LG +A+++ L + +D
Sbjct: 83 RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND 121
Score = 48.8 bits (117), Expect = 1e-05
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
LG + L E++ A++ L + R ++R LG + + E A++
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366
Query: 1821 HTALQLS 1827
LQL+
Sbjct: 367 EQHLQLA 373
Score = 33.8 bits (78), Expect = 0.60
Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 7/70 (10%)
Query: 1805 ASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+SL G+ ++ Q G + G V F A+
Sbjct: 17 SSLGLGS-GGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAFFQAAI 75
Query: 1859 NQQAATHDGL 1868
L
Sbjct: 76 QAGTEDLRTL 85
Score = 33.0 bits (76), Expect = 1.1
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 709 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
+ H+ L+L + + ++ LG + +D+A C L +
Sbjct: 107 QYHKHDLTLAKSMNDR-LGEA---KSSGNLGNTLKVMGRFDEAAICCERHLTLA 156
Score = 30.7 bits (70), Expect = 5.2
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 6/54 (11%)
Query: 709 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
Q + + S + + LG + +Y+KA+ + L +
Sbjct: 69 AFFQAAIQAGTEDL---RTLS---AIYSQLGNAYFYLGDYNKAMQYHKHDLTLA 116
Score = 30.3 bits (69), Expect = 7.1
Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 709 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
E +Q+ L L + + +Q LG + L ++ A++ + L++
Sbjct: 204 EFYQENLKLMRDLGDR-GAQG---RACGNLGNTYYLLGDFQAAIEHHQERLRIA 253
Score = 30.3 bits (69), Expect = 7.4
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 736 NGLGVLFNLSDEYDKAVDCFRSALQVR 762
LG + L E++ A++ L +
Sbjct: 307 YSLGNTYTLLHEFNTAIEYHNRHLAIA 333
Score = 30.0 bits (68), Expect = 7.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 316 NQHGFVRARYNLGITCVHLGANTQAVEHFLTAL 348
++ RA NLG + + LG A EH+ L
Sbjct: 258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat,
protein-protein interaction, protein-binding, PR binding;
2.30A {Mus musculus}
Length = 338
Score = 69.2 bits (170), Expect = 3e-12
Identities = 48/285 (16%), Positives = 90/285 (31%), Gaps = 42/285 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA---AKQE-PDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666
G+ + GD + + + EAA ++ + ++ LG + +A+ L
Sbjct: 11 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70
Query: 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKD---------KIRPGQESNPRPSAYKADA 1717
++ + + + + N L + I +E N + +A A
Sbjct: 71 TLA-RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVG--EARA 125
Query: 1718 LPS---------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNA---ARQCPSQSIDPDV 1765
L + K T P R Q + LY ++
Sbjct: 126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA 185
Query: 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
LG L + AV L + + + R ++ LG + E A E
Sbjct: 186 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245
Query: 1820 YHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
Y L L+ ++ Y+LG T L +A+++ L L
Sbjct: 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 290
Score = 62.6 bits (153), Expect = 4e-10
Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 10/102 (9%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV----RPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822
G S + V F +A+QV S ++++LG + + +A+E +H
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 1823 ALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L L+ G +A NLG T LG +A+ L
Sbjct: 69 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110
Score = 60.7 bits (148), Expect = 2e-09
Identities = 48/297 (16%), Positives = 97/297 (32%), Gaps = 48/297 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG D A+ Y + A+ +LG +L +AI +
Sbjct: 49 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 108
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDAL---DTLKDKIRPGQESNPRPSAYKADALP-- 1719
L I + L + + N ++ A G+ +A + A+
Sbjct: 109 HLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQ-AAVDLY 166
Query: 1720 ----SKLTRLANHTLTFRSPLSS--------------REIHQQVLSLYLNAARQCPSQSI 1761
S +T L + R+ + H+Q L + ++ ++
Sbjct: 167 EENLSLVTALGDRAAQGRA-FGNLGNTHYLLGNFRDAVIAHEQRLLIA----KEFGDKAA 221
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEE 1815
+ + LG + E++ A + ++ L + R +++ LG + E+
Sbjct: 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 281
Query: 1816 AVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
A++ + L ++ G RA ++LG LG + QA+ L D
Sbjct: 282 AIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
Score = 53.0 bits (128), Expect = 4e-07
Identities = 23/139 (16%), Positives = 45/139 (32%), Gaps = 18/139 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------R 1793
+ + + + S + + LG + +Y KA++ L + +
Sbjct: 26 SFFEAAVQVGTEDL---KTLS---AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 79
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+++ LG +L +EA+ L +S G RA YNLG G +
Sbjct: 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 139
Query: 1848 TQAVEHFLTALNQQAATHD 1866
T + +
Sbjct: 140 FGCPGPQDTGEFPEDVRNA 158
Score = 41.5 bits (98), Expect = 0.002
Identities = 12/70 (17%), Positives = 19/70 (27%), Gaps = 4/70 (5%)
Query: 1801 NRLGASLANGNRPEEAVEAYHTALQLS----PGFVRARYNLGITCVHLGANTQAVEHFLT 1856
G L V + A+Q+ LG +L +A+E+
Sbjct: 9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 68
Query: 1857 ALNQQAATHD 1866
L D
Sbjct: 69 DLTLARTIGD 78
Score = 33.0 bits (76), Expect = 0.87
Identities = 23/152 (15%), Positives = 42/152 (27%), Gaps = 46/152 (30%)
Query: 709 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
E H L+L R Q + LG + +D+A+ C + L +
Sbjct: 64 EYHHHDLTLA----RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS------ 113
Query: 769 LVYLFSSLDFQPPKQKISD-PDELRDYQHRKRKAFEDNI-------RKNRMVISNWIKYA 820
++++D E R N+ K+
Sbjct: 114 --------------RELNDKVGEARAL---------YNLGNVYHAKGKSFGCPGPQDTGE 150
Query: 821 QWEESQKQVDRARSIYERALDV-----DHRNI 847
E+ + + A +YE L + D
Sbjct: 151 FPEDVRNALQAAVDLYEENLSLVTALGDRAAQ 182
Score = 30.3 bits (69), Expect = 6.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 307 LTLCLIIEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTAL 348
LTL I +Q G +A NLG T LG +A+ L
Sbjct: 70 LTLARTIG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHL 110
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell
polarity, asymmetric CEL division, mitotic spindle
orientation; 2.60A {Homo sapiens}
Length = 406
Score = 69.6 bits (171), Expect = 3e-12
Identities = 46/286 (16%), Positives = 88/286 (30%), Gaps = 42/286 (14%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA----AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCL 1666
G+ + GD + + + EAA + + ++ LG + +A+ L
Sbjct: 15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74
Query: 1667 SIEPKNLEALMAISICFTNEACLHDALDTLKD---------KIRPGQESNPRPSAYKADA 1717
++ + + + + N L + I +E N + +A A
Sbjct: 75 TLA-RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVG--EARA 129
Query: 1718 LPS---------KLTRLANHTLTFRSPLSSREIHQQVLSLYLNA---ARQCPSQSIDPDV 1765
L + K P R+ Q + Y ++
Sbjct: 130 LYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRA 189
Query: 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
LG L + AV L + + + R ++ LG + E A E
Sbjct: 190 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249
Query: 1820 YHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
Y L L+ ++ Y+LG T L +A+++ L L
Sbjct: 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295
Score = 62.3 bits (152), Expect = 8e-10
Identities = 56/352 (15%), Positives = 109/352 (30%), Gaps = 64/352 (18%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG D A+ Y + A+ +LG +L +AI +
Sbjct: 53 LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDAL---DTLKDKIRPGQESNPRPSAYKADALPS- 1720
L I + L + + N ++ A G+ A + A+
Sbjct: 113 HLDIS-RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ-AAVDFY 170
Query: 1721 ----KLTR-LANHTLTFRSPLSS--------------REIHQQVLSLYLNAARQCPSQSI 1761
L L + R+ + H+Q L + ++ ++
Sbjct: 171 EENLSLVTALGDRAAQGRA-FGNLGNTHYLLGNFRDAVIAHEQRLLIA----KEFGDKAA 225
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEE 1815
+ + LG + E++ A + ++ L + R +++ LG + E+
Sbjct: 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEK 285
Query: 1816 AVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHF--------------- 1854
A++ + L ++ G RA ++LG LG + QA+
Sbjct: 286 AIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345
Query: 1855 -LTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLRGFHPPFGDKLPHINL 1905
LTA + L ++ + I SL G P G + N+
Sbjct: 346 ELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSSLNGVRPKLGRRHSMENM 397
Score = 60.0 bits (146), Expect = 4e-09
Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDD----SRLWNRLGASLANGNRPEEAVEAYHT 1822
G S + V F +A+QV +D S ++++LG + + +A+E +H
Sbjct: 13 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHH 72
Query: 1823 ALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
L L+ G +A NLG T LG +A+ L+
Sbjct: 73 DLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLD 115
Score = 51.9 bits (125), Expect = 1e-06
Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------R 1793
+ + + + S + + LG + +Y KA++ L + +
Sbjct: 30 SFFEAAVQVGTEDL---KTLS---AIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQ 83
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+++ LG +L +EA+ L +S G RA YNLG G +
Sbjct: 84 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKS 143
Query: 1848 TQAVEHFLTALNQQAATHD 1866
+
Sbjct: 144 FGCPGPQDVGEFPEEVRDA 162
Score = 41.5 bits (98), Expect = 0.002
Identities = 12/78 (15%), Positives = 19/78 (24%), Gaps = 4/78 (5%)
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS----PGFVRARYNLGITCVHLGANT 1848
G L V + A+Q+ LG +L
Sbjct: 5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 64
Query: 1849 QAVEHFLTALNQQAATHD 1866
+A+E+ L D
Sbjct: 65 KALEYHHHDLTLARTIGD 82
Score = 32.7 bits (75), Expect = 1.2
Identities = 24/152 (15%), Positives = 41/152 (26%), Gaps = 46/152 (30%)
Query: 709 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL 768
E H L+L R Q + LG + +D+A+ C + L +
Sbjct: 68 EYHHHDLTLA----RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDIS------ 117
Query: 769 LVYLFSSLDFQPPKQKISD-PDELRDYQHRKRKAFEDNI-------RKNRMVISNWIKYA 820
++++D E R N+ K+
Sbjct: 118 --------------RELNDKVGEARAL---------YNLGNVYHAKGKSFGCPGPQDVGE 154
Query: 821 QWEESQKQVDRARSIYERALDV-----DHRNI 847
EE + + A YE L + D
Sbjct: 155 FPEEVRDALQAAVDFYEENLSLVTALGDRAAQ 186
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 8e-12
Identities = 72/519 (13%), Positives = 137/519 (26%), Gaps = 119/519 (22%)
Query: 953 VDSEVG--GLSSKGLIEGTVTTPSYLPEIQEKSRQDSSR--------------KPVVPRT 996
+D E G K ++ V +++ K QD + K V T
Sbjct: 7 MDFETGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 997 NLI--CLGLSSSRATGSVPSRSENEPYLF---RIKFIPGDLKSRMVLYPNKLTKFHSNRM 1051
+ L Y F IK +Y + + +++
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ 124
Query: 1052 SGLARHKVRNHKQTNIHFYILKNTVAIELIPQSRLRFVY----CG-TFQNMCPMLEGDLV 1106
+ R + +EL P + + G T + D+
Sbjct: 125 VFAKYNVSRLQPYLKLR------QALLELRPAKNV-LIDGVLGSGKT------WVALDVC 171
Query: 1107 QSFLLRHLEAAAKQEPDNAEVWLSLG-----ISLAENEQLLGEFWEHNLGNMQQAFRMDN 1161
S+ + + + D WL+L ++ E Q L + N ++ N
Sbjct: 172 LSYKV-------QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW--TSRSDHSSN 222
Query: 1162 LLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSHFEH-------TPPET 1214
+ + I+A +R + LL + + A F T +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLV-LLNV--QNAKAWNA---FNLSCKILLTTRFKQ 276
Query: 1215 IWDNAPIMRGSEILPQEDLGGLQLGFGPQWCSEFLRTSEPLLDNTQEELTNLRALS---E 1271
+ D + I L ++L L + TN R LS E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR-EVLTTNPRRLSIIAE 335
Query: 1272 DYSSDANKADSNQNNILLNALKTTAEDSVKTLDQNPDMKQ--SKLLKFMSNVATDGTPVL 1329
D N ++ + L T E S+ L+ + ++ +L F + +
Sbjct: 336 SIRDGLATWD-NWKHVNCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSA-----HI- 387
Query: 1330 SDPEAATVQQWG-SEFQSTTSPEHQWESAFLGQNASGTTSGVSTSGTVDKPEPALWNELN 1388
P W ++ L +
Sbjct: 388 --PTILLSLIWFDVIKSDVMVVVNKLHKYSL---------------------------VE 418
Query: 1389 SHWKEMTESLGSGESLPHQWFSDFSRNQRSSVSMHVSLV 1427
KE T S+ + + + ++H S+V
Sbjct: 419 KQPKESTISI-------PSIYLELKVKLENEYALHRSIV 450
Score = 64.9 bits (157), Expect = 3e-10
Identities = 102/650 (15%), Positives = 193/650 (29%), Gaps = 207/650 (31%)
Query: 604 TANAENRYK----VYDDEYL----CR-VLEAT--VFTPAKFIQEETLESPHFEYFDITGI 652
T + +YK V++D ++ C+ V + + + + + + S ++G
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI--DHIIMSKD----AVSGT 64
Query: 653 DPVITIFLS-------EFFSKPVD-------TPGQESNPRPSAHKADALPSKLTRLANHT 698
+ LS +F + + +P + +PS + RL N
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYIEQRDRLYNDN 123
Query: 699 LTFRSPLS-SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-----VLFNLSDEYDKAV 752
F + + SR Q L L P++++ + +G+ + A+
Sbjct: 124 QVF-AKYNVSRL--QPYLKLRQALLELRPAKNV---LIDGVLGSGKTWV---------AL 168
Query: 753 DCFRS-ALQVRPDF----------------TELLVYLFSSLD---FQPPKQKISDPDELR 792
D S +Q + DF E+L L +D + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 793 DYQHRKRKAFEDNIRKNRMVI-----SNWIKYAQWEE-----------SQKQV-DRARSI 835
Q R+ + +N +++ + W KQV D +
Sbjct: 229 SIQAELRRLLKSKPYENCLLVLLNVQNAKA----WNAFNLSCKILLTTRFKQVTDFLSAA 284
Query: 836 YERALDVDHRNITLWLKYTE------LEMRNRQVNHARNLWDRAVTILPRA--------- 880
+ +DH ++TL + L+ R ++L +T PR
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCR------PQDLPREVLTTNPRRLSIIAESIR 338
Query: 881 -----NQFWYKYTY------MEEMLENVAG--------KLFVFHRDS-ISQVTLWLGALT 920
W +E L + +L VF + I + L
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL------ 392
Query: 921 LSLEGLGSNLQSWVRFLARDVGECCCGQVVSTVDSEVGGLSSKGLI-----EGTVTTPSY 975
S + W + S V V L L+ E T++ PS
Sbjct: 393 -------SLI--W------------FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 976 LPEIQEKSRQDSS-RKPVVPRTNLICLGLSSSRATGSVPSRSENEPYLFRIKFIPGDLKS 1034
E++ K + + + +V N+ + + +P + Y + I LK+
Sbjct: 432 YLELKVKLENEYALHRSIVDHYNIPK----TFDSDDLIPPYLDQ--YFY--SHIGHHLKN 483
Query: 1035 -----RMVLYPNKLTKFH--SN--RMSGLAR----------HKVRNHKQTNIHFYILKNT 1075
RM L+ F R A +++ +K YI N
Sbjct: 484 IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP-----YICDND 538
Query: 1076 VAIELIPQSRLRFVY-CGTFQNMCPMLEGDLVQSFLLRH----LEAAAKQ 1120
E + + L F+ DL++ L+ E A KQ
Sbjct: 539 PKYERLVNAILDFLPKIEENLICSKYT--DLLRIALMAEDEAIFEEAHKQ 586
Score = 59.9 bits (144), Expect = 8e-09
Identities = 100/742 (13%), Positives = 203/742 (27%), Gaps = 232/742 (31%)
Query: 190 DANKADSNQNNILLNALKTTAEDSVKTLDQN--PDMKQSKLLKFMSNVATDGTPVLSDPE 247
+ + +IL + V D DM + +LS E
Sbjct: 10 ETGEHQYQYKDILSVFE----DAFVDNFDCKDVQDMPK---------------SILSKEE 50
Query: 248 AATVQQWGSEYQST--------TSPEHQWESAFLGQNASVFDLPPRYGPILFCVSFQWIN 299
+ T + E + F+ + L Y F +S
Sbjct: 51 IDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEV-----LRINYK---FLMS-PIKT 100
Query: 300 EVKFITLLTLCLIIEVNQ-HGFVR--ARYNLGITCVHLGANTQAVEHFLTALNQQAAAHD 356
E + +++T I + ++ + + A+YN+ + Q AL +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV--------SRLQPYLKLRQAL-LELRPAK 151
Query: 357 GLTPHG--------LEPRADGLTPHGLEPRAVKEMSDSI-WYSLRVVLSVLNRSDLHHCV 407
+ G + D + ++ + M I W +L+ +C
Sbjct: 152 NVLIDGVLGSGKTWVA--LDVCLSYKVQCK----MDFKIFWLNLK------------NCN 193
Query: 408 TNSPACISAKALLTVVSSSISYPPPHINLTQPEWDQEKSAARDCSNDDPSGYQPCTKLHN 467
+ + LL + + + H + + ++ R P Y+ C L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENC--L-- 247
Query: 468 LSGVLGTVHLTYHCALGSHTKAKWYIVHIEYNN----TLVFGRILSDSSKSRFEDVVAIQ 523
L VL V N L+ R K + + A
Sbjct: 248 L--VLLNV---------------QNAKAWNAFNLSCKILLTTR-----FKQVTDFLSAAT 285
Query: 524 ELLFCLGLHPHFELKNEEKKVITKWTIISTQLISWSKLCSDTKGAKYDSAVMCNRNLPLF 583
L H +E K ++ K+ Q L + N P
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-----DL----------PREVLTTN-PRR 329
Query: 584 VN-FPKHVPNARRSVNKQFYITANAENRYKVYDDEYLCRVLEATVFTPAKFIQEETLESP 642
++ + + + T + +K + + L ++E+++ LE
Sbjct: 330 LSIIAESI--------RDGLATWD---NWKHVNCDKLTTIIESSL---------NVLEPA 369
Query: 643 HF-EYFDITGIDPVITIFLSEFFSKPVDTPGQ-------ESNPRPSAHKADALPSKLTRL 694
+ + FD + F P + + L L
Sbjct: 370 EYRKMFDRLSV-----------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SL 416
Query: 695 AN----------HTLTFR---SPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNG---- 737
++ + +H+ ++ Y N + S + P +
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYS 475
Query: 738 -LGVLFNLSD-EYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKI---------- 785
+G +L + E+ + + FR +F LDF+ +QKI
Sbjct: 476 HIG--HHLKNIEHPERMTLFRM--------------VF--LDFRFLEQKIRHDSTAWNAS 517
Query: 786 -SDPDELRD---YQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALD 841
S + L+ Y + DN K +++ + + E + + AL
Sbjct: 518 GSILNTLQQLKFY----KPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM 573
Query: 842 VDHRNITLWLKYTELEMRNRQV 863
+ I E ++QV
Sbjct: 574 AEDEAI--------FEEAHKQV 587
Score = 55.6 bits (133), Expect = 2e-07
Identities = 78/521 (14%), Positives = 150/521 (28%), Gaps = 159/521 (30%)
Query: 1497 VASINQQPVPNTNGNLHSLDRTLAVSKLFKGPIIGTPSTTSGVSTSGTVDKPEPALWNEL 1556
+ + +QP T + DR +++F V + +P L +L
Sbjct: 98 IKTEQRQPSMMTRMYIEQRDRLYNDNQVF---------------AKYNVSRLQPYL--KL 140
Query: 1557 NSHWKEMTES--------LGSGES-LPHQWFSDFSRNQRSSVSMHEYTFAEDN------- 1600
E+ + LGSG++ + + + + N
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 1601 PMQN---------ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD---------NAEVW 1642
+Q + + KLR + + + L +K + NA+ W
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL-LKSKPYENCLLVLLNVQNAKAW 259
Query: 1643 --LSLG-----------------------ISLAENEQ---DPQAIAALSKCLSIEPKNL- 1673
+L ISL + + + L K L P++L
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
Query: 1674 -EAL----MAISICFTNEACLHDALDTLK-------DKIRPGQES---NPRPSAYKA--- 1715
E L +SI + D L T DK+ ES P+ Y+
Sbjct: 320 REVLTTNPRRLSII---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 1716 -------DA-LPSK-----------------LTRLANHTLTFRSPLSSR-EIHQQVLSLY 1749
A +P+ + +L ++L + P S I S+Y
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIY 432
Query: 1750 LNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLAN 1809
L + + + + + +N+ +D L D ++ +G L N
Sbjct: 433 LELKVKLEN---EYALHRSIVDHYNIPKTFDS------DDLIPPYLDQYFYSHIGHHLKN 483
Query: 1810 GNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLT 1869
PE + L F+ + H A L L Q +
Sbjct: 484 IEHPERMTL--FRMVFLDFRFLEQKIR------HDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 1870 PHGLEPRAVKEMSDSIWYSLRGFHPPFGDKL---PHINLTQ 1907
+ +P+ + + ++ F P + L + +L +
Sbjct: 536 DN--DPK-----YERLVNAILDFLPKIEENLICSKYTDLLR 569
Score = 37.1 bits (85), Expect = 0.072
Identities = 34/214 (15%), Positives = 71/214 (33%), Gaps = 45/214 (21%)
Query: 52 PDQLLGEFWEHNLGNMQQAFRMDNLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWA 111
P LL W ++ ++ M ++ ++ ++PK IS+ + + +
Sbjct: 388 PTILLSLIW----FDVIKSDVMV-VVNKLHKYSLVEKQPKEST---ISIPSIYLELKVKL 439
Query: 112 NQFLEAGSHFEHTPPETIWDNAPIMRGSEILPQEDLGGLQL-GFGPQWCSEF---LRTSE 167
E H +I D+ I + +DL L + + S L+ E
Sbjct: 440 EN--EYALH------RSIVDHYNIPKT---FDSDDLIPPYLDQY---FYSHIGHHLKNIE 485
Query: 168 PLLDNTQEELTNLRALSEDY---------SSDANKADSNQNNILLNALKTTAEDSVKTLD 218
E +T R + D+ S A A + N L LK + + D
Sbjct: 486 H-----PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILN-TLQQLKFY-KPYICDND 538
Query: 219 QNPDMKQSKLLKFMSNVATDGTPVLSDPEAATVQ 252
+ + +L F+ + + ++ ++
Sbjct: 539 PKYERLVNAILDFLPKIEEN---LICSKYTDLLR 569
Score = 33.7 bits (76), Expect = 0.83
Identities = 29/166 (17%), Positives = 55/166 (33%), Gaps = 22/166 (13%)
Query: 4 KDLVDGGECGGSNSLMQVTSHFVQDKGLRDEG-FHR--------PYTHEENSFANAHPDQ 54
LV+ + S+ + + L +E HR P T + + + DQ
Sbjct: 414 YSLVEKQPKESTISIPSI--YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 55 LLGEFWEHNLGNMQQAFRMD---NLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWA 111
H+L N++ RM + + R +E + +A S+L + +
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 112 NQFLEAGSHFEHTPPETIWDNAPIMRGSEIL---PQEDLGGLQLGF 154
+ +E I D + + E L DL L++
Sbjct: 532 PYICDNDPKYERL-VNAILDF--LPKIEENLICSKYTDL--LRIAL 572
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte
oxidase factor, SH3 domain, repeat, TPR repeat cell
cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB:
1wm5_A 1e96_B*
Length = 213
Score = 64.7 bits (158), Expect = 2e-11
Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
GVL ++ A+D F V+ SR+ +G EA +A+ ++
Sbjct: 12 EGVLAADKKDWKGALDAFS---AVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK 68
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
A + G+ A++ AL Q
Sbjct: 69 HLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ 100
Score = 57.4 bits (139), Expect = 5e-09
Identities = 14/114 (12%), Positives = 33/114 (28%), Gaps = 16/114 (14%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYH 1821
+ +G ++ + +A F ++ + + + G + + A++
Sbjct: 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLK 95
Query: 1822 TAL-QLSPGFVRA---------------RYNLGITCVHLGANTQAVEHFLTALN 1859
AL QL + YN+ +A E A +
Sbjct: 96 EALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149
Score = 48.2 bits (115), Expect = 8e-06
Identities = 22/223 (9%), Positives = 58/223 (26%), Gaps = 55/223 (24%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSI 1668
+ G + D A+ A + ++ + ++G + +A A ++ ++
Sbjct: 10 WNEGVLAADKKDWKGALDAFSAV---QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR 66
Query: 1669 EPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
+ A + L+ + I
Sbjct: 67 DKHLAVA-------YFQRGMLYYQTEKYDLAI----------KDL-------------KE 96
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRS 1788
L + L L A +V + ++ +E+ KA +
Sbjct: 97 ALIQLRGNQLIDYKILGLQFKLFAC----------EVLYNIAFMYAKKEEWKKAEEQLAL 146
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
A ++ + ++ ++A+E P +
Sbjct: 147 ATSMKSEPRH------------SKIDKAMECVWKQKLYEPVVI 177
Score = 44.3 bits (105), Expect = 1e-04
Identities = 13/89 (14%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
+ ++ +G ++ A + ++ A + G+ + E+ AI
Sbjct: 33 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIK 92
Query: 1661 ALSKCLS-IEPKNLEALMAISICFTNEAC 1688
L + L + L + + F AC
Sbjct: 93 DLKEALIQLRGNQLIDYKILGLQFKLFAC 121
Score = 40.9 bits (96), Expect = 0.002
Identities = 19/102 (18%), Positives = 37/102 (36%), Gaps = 19/102 (18%)
Query: 1760 SIDPD---VQNGLGVLFNLSDEYDKAVDCFRSAL-QVRPDDSRLWNRLG------ASLAN 1809
+ D G+L+ +++YD A+ + AL Q+R + + LG A
Sbjct: 65 NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVL 124
Query: 1810 GNR---------PEEAVEAYHTALQLSPGFVRARYNLGITCV 1842
N ++A E A + ++ + + CV
Sbjct: 125 YNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECV 166
Score = 33.5 bits (77), Expect = 0.45
Identities = 22/142 (15%), Positives = 43/142 (30%), Gaps = 36/142 (25%)
Query: 1604 NETNAFA---LGQEKLRQGDLPSAILYLEAAAKQEPDN----------------AEVWLS 1644
++ A A G + AI L+ A Q N EV +
Sbjct: 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYN 126
Query: 1645 LGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQ 1704
+ A+ E+ +A L+ S++ + + + A++ + +
Sbjct: 127 IAFMYAKKEEWKKAEEQLALATSMKSEP------------RHSKIDKAMECVWKQKLYEP 174
Query: 1705 ESNP-----RPSAYKADALPSK 1721
P RP+ + L K
Sbjct: 175 VVIPVGRLFRPNERQVAQLAKK 196
Score = 30.8 bits (70), Expect = 3.2
Identities = 3/37 (8%), Positives = 11/37 (29%)
Query: 731 DPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTE 767
+ +G ++ + +A F ++
Sbjct: 36 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV 72
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Length = 203
Score = 61.9 bits (151), Expect = 1e-10
Identities = 17/116 (14%), Positives = 36/116 (31%), Gaps = 13/116 (11%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAV 1817
+ LG ++ D +D+A F++ Q + R +++G + A
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86
Query: 1818 EAYHTALQLS-------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
+ +L Y + +H G A + + +L D
Sbjct: 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Score = 57.7 bits (140), Expect = 4e-09
Identities = 18/133 (13%), Positives = 40/133 (30%), Gaps = 17/133 (12%)
Query: 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------ 1792
R Q + ++ + + + +G++ ++ +D A CF ++
Sbjct: 46 RASFQALQQQA----QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPE 101
Query: 1793 -RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLG 1845
S + + A + Y +L + A LG
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161
Query: 1846 ANTQAVEHFLTAL 1858
+A +H+L A
Sbjct: 162 NLLEAQQHWLRAR 174
Score = 50.7 bits (122), Expect = 8e-07
Identities = 12/119 (10%), Positives = 26/119 (21%), Gaps = 15/119 (12%)
Query: 1739 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------ 1792
R + L + + S + + + A + +L
Sbjct: 86 RRCFLEERELLASLPEDPLAASA---NAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLG 1845
+ + + LG EA + + A + L H
Sbjct: 143 QVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHH 201
Score = 46.9 bits (112), Expect = 1e-05
Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 12/90 (13%)
Query: 1781 KAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------P 1828
+A D + Q S LG A +R +EA ++ Q +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 1829 GFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
RA + +G+ G A FL
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEER 93
Score = 36.9 bits (86), Expect = 0.036
Identities = 25/207 (12%), Positives = 42/207 (20%), Gaps = 55/207 (26%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
LG A +A + +G+ A +
Sbjct: 32 LGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLE 91
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724
+ E +A S A + G A A
Sbjct: 92 ERELLASLPEDPLAASANAYEVATVALHF---------GD---------LAGAR------ 127
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 1784
+ +++ L +Q Q GLG L +A
Sbjct: 128 ---------------QEYEKSLVYA----QQADDQVAIACAFRGLGDLAQQEKNLLEAQQ 168
Query: 1785 CFRSALQV------RPDDSRLWNRLGA 1805
+ A + + L RL
Sbjct: 169 HWLRARDIFAELEDSEAVNELMTRLNG 195
Score = 35.3 bits (82), Expect = 0.11
Identities = 11/58 (18%), Positives = 16/58 (27%), Gaps = 6/58 (10%)
Query: 1815 EAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
EA + Q AR+ LG + +A F Q + D
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61
Score = 31.1 bits (71), Expect = 2.7
Identities = 5/55 (9%), Positives = 13/55 (23%), Gaps = 3/55 (5%)
Query: 708 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
R + L + + S + + + A + +L
Sbjct: 86 RRCFLEERELLASLPEDPLAASA---NAYEVATVALHFGDLAGARQEYEKSLVYA 137
Score = 30.7 bits (70), Expect = 3.2
Identities = 7/55 (12%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 708 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
R Q + ++ + + + +G++ ++ +D A CF ++
Sbjct: 46 RASFQALQQQA----QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELL 96
Score = 30.3 bits (69), Expect = 4.5
Identities = 8/41 (19%), Positives = 13/41 (31%)
Query: 316 NQHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHD 356
+ AR+ LG + +A F Q + D
Sbjct: 21 HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD 61
Score = 30.3 bits (69), Expect = 5.1
Identities = 7/41 (17%), Positives = 13/41 (31%)
Query: 316 NQHGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAAAHD 356
+ Y + +H G A + + +L A D
Sbjct: 102 DPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADD 142
Score = 29.6 bits (67), Expect = 7.3
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 33/134 (24%)
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTEL--------------LVYLFSSLDF 778
+ LG ++ D +D+A F++ Q + +V
Sbjct: 27 GARFMLGYVYAFMDRFDEARASFQALQQQ---AQKSGDHTAEHRALHQVGMVE------- 76
Query: 779 QPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYER 838
+ + D R +R+ +N + A + AR YE+
Sbjct: 77 ----RMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132
Query: 839 ALDV-----DHRNI 847
+L D I
Sbjct: 133 SLVYAQQADDQVAI 146
Score = 29.6 bits (67), Expect = 8.9
Identities = 10/55 (18%), Positives = 18/55 (32%), Gaps = 4/55 (7%)
Query: 708 REIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR 762
R+ +++ L +Q Q GLG L +A + A +
Sbjct: 127 RQEYEKSLVYA----QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIF 177
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein,
tetratricopeptide repeat protein, HOST-virus interaction;
2.4A {Homo sapiens} SCOP: k.38.1.1
Length = 131
Score = 59.9 bits (146), Expect = 1e-10
Identities = 18/88 (20%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
+ + ++ AV + A+++ P ++ + NR A+ + AV+ A+ + P +
Sbjct: 22 QMKVEN-FEAAVHFYGKAIELNPANAVYFCNR-AAAYSKLGNYAGAVQDCERAICIDPAY 79
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A +G+ L + +AV ++ AL
Sbjct: 80 SKAYGRMGLALSSLNKHVEAVAYYKKAL 107
Score = 54.1 bits (131), Expect = 1e-08
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNL 1837
Y AV A+ + P S+ + R+G +L++ N+ EAV Y AL+L P + NL
Sbjct: 61 NYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNL 120
Query: 1838 GIT 1840
I
Sbjct: 121 KIA 123
Score = 38.7 bits (91), Expect = 0.003
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 3/82 (3%)
Query: 1604 NETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
N NA + G+ A+ E A +P ++ + +G++L+ + +A+A
Sbjct: 42 NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVA 101
Query: 1661 ALSKCLSIEPKNLEALMAISIC 1682
K L ++P N + I
Sbjct: 102 YYKKALELDPDNETYKSNLKIA 123
Score = 38.7 bits (91), Expect = 0.004
Identities = 13/79 (16%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Query: 1597 AEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+E++ + E G E+++ + +A+ + A + P NA + + + ++
Sbjct: 5 SEEDSAEAER-LKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYA 63
Query: 1657 QAIAALSKCLSIEPKNLEA 1675
A+ + + I+P +A
Sbjct: 64 GAVQDCERAICIDPAYSKA 82
Score = 31.0 bits (71), Expect = 1.4
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDP 1656
+G A+ Y + A + +PDN +L I+ + + P
Sbjct: 86 MGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131
Score = 31.0 bits (71), Expect = 1.6
Identities = 14/68 (20%), Positives = 22/68 (32%)
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
+ ++ G E AV Y A++L+P N LG A
Sbjct: 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65
Query: 1851 VEHFLTAL 1858
V+ A+
Sbjct: 66 VQDCERAI 73
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell
division, protein binding; 1.10A {Mus musculus}
Length = 164
Score = 57.9 bits (141), Expect = 1e-09
Identities = 24/131 (18%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV------R 1793
H+Q L + ++ ++ + + LG + E++ A + ++ L + R
Sbjct: 30 IAHEQRLLIA----KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+++ LG + E+A++ + L ++ G RA ++LG LG +
Sbjct: 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNH 145
Query: 1848 TQAVEHFLTAL 1858
QA+ L
Sbjct: 146 DQAMHFAEKHL 156
Score = 56.8 bits (138), Expect = 4e-09
Identities = 22/104 (21%), Positives = 37/104 (35%), Gaps = 12/104 (11%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
LG L + AV L + + + ++ LG + E A E Y
Sbjct: 13 GNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYY 72
Query: 1821 HTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L L+ ++ Y+LG T L +A+++ L L
Sbjct: 73 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116
Score = 42.1 bits (100), Expect = 4e-04
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
LG + L +Y+KA+D L + R + R LG + ++A+
Sbjct: 93 YSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 152
Query: 1821 HTALQLS 1827
L++S
Sbjct: 153 EKHLEIS 159
Score = 39.8 bits (94), Expect = 0.002
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 1793 RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGA 1846
R R + LG + +AV A+ L ++ A NLG + LG
Sbjct: 5 RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGE 64
Query: 1847 NTQAVEHFLTAL 1858
A E++ L
Sbjct: 65 FETASEYYKKTL 76
Score = 29.4 bits (67), Expect = 6.3
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 316 NQHGFVRARYNLGITCVHLGANTQAVEHFLTAL 348
++ ++ Y+LG T L +A+++ L L
Sbjct: 84 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116
Score = 29.0 bits (66), Expect = 9.0
Identities = 11/33 (33%), Positives = 13/33 (39%)
Query: 316 NQHGFVRARYNLGITCVHLGANTQAVEHFLTAL 348
++ RA NLG T LG AV L
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 36
Score = 29.0 bits (66), Expect = 9.7
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 736 NGLGVLFNLSDEYDKAVDCFRSALQVR 762
LG + L +Y+KA+D L +
Sbjct: 93 YSLGNTYTLLQDYEKAIDYHLKHLAIA 119
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase,
ligase-chaperone complex; 1.54A {Mus musculus} PDB:
3q47_B 3q4a_B*
Length = 137
Score = 54.6 bits (132), Expect = 1e-08
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 15/114 (13%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y +A C+ A+ P + + NR +PE+A+ AL+L V+A +
Sbjct: 24 KYPEAAACYGRAITRNPLVAVYYTNR-ALCYLKMQQPEQALADCRRALELDGQSVKAHFF 82
Query: 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEMSDSIWYSLR 1890
LG + + + +A+ + A + L D I +LR
Sbjct: 83 LGQCQLEMESYDEAIANLQRAYS-------------LAKEQRLNFGDDIPSALR 123
Score = 43.8 bits (104), Expect = 6e-05
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+ ++A+ DC R AL++ + LG +EA+ A L+
Sbjct: 57 QQPEQALADC-RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108
Score = 31.5 bits (72), Expect = 1.2
Identities = 12/63 (19%), Positives = 22/63 (34%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
L+ A+ A + + + + LG E E +AIA L + S+ +
Sbjct: 54 LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLN 113
Query: 1676 LMA 1678
Sbjct: 114 FGD 116
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1,
SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Length = 164
Score = 55.1 bits (133), Expect = 1e-08
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
EY KA+D + AL + P + NR A+ + + E+A E A + P + +A
Sbjct: 26 EYSKAIDLYTQALSIAPANPIYLSNR-AAAYSASGQHEKAAEDAELATVVDPKYSKAWSR 84
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
LG+ + A E + +
Sbjct: 85 LGLARFDMADYKGAKEAYEKGI 106
Score = 48.6 bits (116), Expect = 3e-06
Identities = 15/63 (23%), Positives = 27/63 (42%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+++KA + A V P S+ W+RLG + + + A EAY ++
Sbjct: 59 GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118
Query: 1837 LGI 1839
G+
Sbjct: 119 RGL 121
Score = 32.8 bits (75), Expect = 0.56
Identities = 20/113 (17%), Positives = 29/113 (25%), Gaps = 13/113 (11%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
G A E A +P ++ W LG++ + A A K + E
Sbjct: 56 SASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSD 115
Query: 1676 LMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
M L+T K KI P+ D
Sbjct: 116 AMK------------RGLETTKRKIEEANRGAEPPAD-DVDDAAGASRGAGGM 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat,
HSP70, protein binding, chaperone; 1.60A {Homo sapiens}
SCOP: a.118.8.1
Length = 118
Score = 53.7 bits (130), Expect = 2e-08
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
D A+ C+ A+++ P + L+ NR A+ A ++A E + L P + +
Sbjct: 19 NIDDALQCYSEAIKLDPHNHVLYSNR-SAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSR 77
Query: 1837 LGITCVHLGANTQAVEHFLTAL-----NQQA 1862
L +A + L N Q
Sbjct: 78 KAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
Score = 49.9 bits (120), Expect = 4e-07
Identities = 16/61 (26%), Positives = 28/61 (45%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y KA + + ++PD + ++R A+L NR EEA Y L+ + +
Sbjct: 52 GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111
Query: 1837 L 1837
L
Sbjct: 112 L 112
Score = 34.1 bits (79), Expect = 0.11
Identities = 10/67 (14%), Positives = 21/67 (31%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
++GD A +PD + + +L + +A + L E N +
Sbjct: 49 AKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQL 108
Query: 1676 LMAISIC 1682
+
Sbjct: 109 KEGLQNM 115
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and
HSP90, C-terminal PA HSP70, peptide binding protein;
1.60A {Saccharomyces cerevisiae}
Length = 126
Score = 53.4 bits (129), Expect = 2e-08
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 1776 SDEYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
++ AV + ++ P+D+R + NR A+LA EA+ + A++ P FVRA
Sbjct: 17 KSDWPNAVKAYTEMIKRAPEDARGYSNR-AAALAKLMSFPEAIADCNKAIEKDPNFVRAY 75
Query: 1835 YNLGITCVHLGANTQAVEHFLTAL 1858
+ + A+E A
Sbjct: 76 IRKATAQIAVKEYASALETLDAAR 99
Score = 43.8 bits (104), Expect = 6e-05
Identities = 9/63 (14%), Positives = 18/63 (28%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+ +A+ A++ P+ R + R + A+E A
Sbjct: 52 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111
Query: 1837 LGI 1839
I
Sbjct: 112 REI 114
Score = 32.2 bits (74), Expect = 0.54
Identities = 21/86 (24%), Positives = 40/86 (46%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G+E + D P+A+ K+ P++A + + +LA+ P+AIA +K + +P
Sbjct: 11 GKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN 70
Query: 1672 NLEALMAISICFTNEACLHDALDTLK 1697
+ A + + AL+TL
Sbjct: 71 FVRAYIRKATAQIAVKEYASALETLD 96
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, chaperone; NMR {Homo sapiens}
Length = 133
Score = 53.0 bits (128), Expect = 3e-08
Identities = 18/82 (21%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y +A+ + A++ P D++L+ NR A + A++ +QL P F++
Sbjct: 31 DYPQAMKHYTEAIKRNPKDAKLYSNR-AACYTKLLEFQLALKDCEECIQLEPTFIKGYTR 89
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
+ T+A++ + AL
Sbjct: 90 KAAALEAMKDYTKAMDVYQKAL 111
Score = 46.1 bits (110), Expect = 1e-05
Identities = 13/61 (21%), Positives = 23/61 (37%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
E+ A+ +Q+ P + + R A+L +A++ Y AL L A
Sbjct: 64 LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123
Query: 1837 L 1837
Sbjct: 124 Y 124
Score = 34.9 bits (81), Expect = 0.075
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
+ + A+ E + EP + + +L + +A+ K L ++ EA
Sbjct: 61 TKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEA 120
Query: 1676 LMAISIC 1682
C
Sbjct: 121 ADGYQRC 127
Score = 31.1 bits (71), Expect = 1.4
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 1604 NETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIA 1660
N A + G E ++GD P A+ + A K+ P +A+++ + + + A+
Sbjct: 12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALK 71
Query: 1661 ALSKCLSIEPKNLEAL 1676
+C+ +EP ++
Sbjct: 72 DCEECIQLEPTFIKGY 87
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha
subunit; ftase, farnesyltransferase, farnesyl
transferase, prenyltransferase, CAAX, RAS, lipid
modification, prenylation; HET: SUC FAR; 1.50A {Homo
sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A*
1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A*
2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A*
3ksq_A* 1o1t_A* 1o1s_A* ...
Length = 382
Score = 56.6 bits (136), Expect = 4e-08
Identities = 16/130 (12%), Positives = 45/130 (34%), Gaps = 4/130 (3%)
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLG-VLFNLSDEYDKAVDCFRSAL 1790
FR+ L E ++ L +A + + V + +L +L + + ++ + +
Sbjct: 103 FRAVLQRDERSERAFKLTRDAIELNAA---NYTVWHFRRVLLKSLQKDLHEEMNYITAII 159
Query: 1791 QVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQA 1850
+ +P + ++W+ + P + +E L A +
Sbjct: 160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNE 219
Query: 1851 VEHFLTALNQ 1860
+++ L +
Sbjct: 220 LQYVDQLLKE 229
Score = 55.5 bits (133), Expect = 9e-08
Identities = 32/216 (14%), Positives = 69/216 (31%), Gaps = 27/216 (12%)
Query: 1618 QGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALM 1677
Q DL + Y+ A +++P N +VW + + Q + ++ L+ + KN A
Sbjct: 145 QKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 204
Query: 1678 AISICFTNEACLHDALDTLKDKIRPGQESNPR-PSA--YKADALPSKLTRLANHTLTFRS 1734
+ L + + + + R S + + S T
Sbjct: 205 HRQWVIQEFKLWDNELQYVDQLL----KEDVRNNSVWNQRYFVI-SNTTG---------- 249
Query: 1735 PLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRP 1794
+ R + ++ + L + P + N L + K + L ++P
Sbjct: 250 -YNDRAVLEREVQYTLEMIKLVPH---NESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 304
Query: 1795 DDSRLWNRLGA----SLANGNRPEEAVEAYHTALQL 1826
S + N+ + + + AL+L
Sbjct: 305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALEL 340
Score = 46.2 bits (109), Expect = 7e-05
Identities = 30/240 (12%), Positives = 67/240 (27%), Gaps = 35/240 (14%)
Query: 1614 EKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNL 1673
+ + Q D P+ + +V+ L +E+ +A + + N
Sbjct: 76 DPVPQNDGPNPV----VQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANY 131
Query: 1674 EALMAISICFTN-EACLHDALDTLKDKIRPGQESNPR-PSAYKADALPSKLTRLANHTLT 1731
+ + + LH+ ++ + I E P+ + +H
Sbjct: 132 TVWHFRRVLLKSLQKDLHEEMNYITAII----EEQPKNYQVW-------------HHR-- 172
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
R + Q L + Q + + +D + L+
Sbjct: 173 -RVLVEWLRDPSQELEFIADILNQDAK---NYHAWQHRQWVIQEFKLWDNELQYVDQLLK 228
Query: 1792 VRPDDSRLWNRLGASLANGNRP------EEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
++ +WN+ ++N E V+ ++L P A L G
Sbjct: 229 EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG 288
Score = 45.8 bits (108), Expect = 9e-05
Identities = 9/119 (7%), Positives = 29/119 (24%), Gaps = 9/119 (7%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGA 1805
++ + P + V + VL + + ++ L + W
Sbjct: 152 MNYITAIIEEQPK---NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQW 208
Query: 1806 SLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT------QAVEHFLTAL 1858
+ + ++ L+ + + V++ L +
Sbjct: 209 VIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMI 267
Score = 44.3 bits (104), Expect = 3e-04
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 1/100 (1%)
Query: 1764 DVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRP-EEAVEAYHT 1822
DV + + + ++A R A+++ + +W+ L + + E +
Sbjct: 98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITA 157
Query: 1823 ALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQA 1862
++ P + ++ + L +Q +E LNQ A
Sbjct: 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDA 197
Score = 40.4 bits (94), Expect = 0.005
Identities = 33/213 (15%), Positives = 66/213 (30%), Gaps = 25/213 (11%)
Query: 1617 RQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA- 1675
D + ++ Q+ N W + E + + + + L + +N
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW 237
Query: 1676 -----LMAISICFTNEACLHDALDTLKDKIR--PGQES--NPRPSAYKADALPSKLTRLA 1726
+++ + + + A L + + I+ P ES N + L SK L
Sbjct: 238 NQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL-SKYPNLL 296
Query: 1727 NHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCF 1786
N L + SS + ++ +Y + D + L + L+ E D
Sbjct: 297 NQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED-ILNKALELCEILAKEKD------ 349
Query: 1787 RSALQVRPDDSRLWNRLGASLANGNRPEEAVEA 1819
W +G SL + + E
Sbjct: 350 -------TIRKEYWRYIGRSLQSKHSTENDSPT 375
Score = 37.7 bits (87), Expect = 0.035
Identities = 8/59 (13%), Positives = 19/59 (32%)
Query: 1789 ALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGAN 1847
+ +++ A L R E A + A++L+ + + L +
Sbjct: 89 QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKD 147
Score = 33.9 bits (77), Expect = 0.55
Identities = 36/231 (15%), Positives = 63/231 (27%), Gaps = 24/231 (10%)
Query: 671 PGQESNPRPSAHKADALPS-KLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQ--CPS 727
PGQ + P P H K A SP+ + S L R
Sbjct: 16 PGQPAQPPPQPHPPPPQQQHKEEMAAEAGEAVASPMDDGFVSLDSPSYVLYRDRAEWADI 75
Query: 728 QSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISD 787
+ + V SD++ D FR+ LQ +++ +
Sbjct: 76 DPVPQNDGPNPVVQIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------N 127
Query: 788 PDELRDYQHRKR------KAFEDNIRKNRMVISNWIKYAQ-WE------ESQKQVDRARS 834
+ R+ K + + +I K Q W E + +
Sbjct: 128 AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELE 187
Query: 835 IYERALDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWY 885
L+ D +N W + + ++ D+ + R N W
Sbjct: 188 FIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWN 238
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide
repeat, 3-helix bundle, phosphorelay signa transduction,
phosphatase; 2.19A {Bacillus subtilis}
Length = 378
Score = 56.4 bits (136), Expect = 5e-08
Identities = 22/145 (15%), Positives = 41/145 (28%), Gaps = 14/145 (9%)
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV----- 1792
S Q L +Y N + ++ YDKA+ +AL++
Sbjct: 160 SMYHILQALDIYQNHPLYSIRTI---QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ 216
Query: 1793 -RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL-----SPGFVRARYNLGITCVHLGA 1846
+ + S + AVE + A ++ + + L T G
Sbjct: 217 NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ 276
Query: 1847 NTQAVEHFLTALNQQAATHDGLTPH 1871
+A + L+ A
Sbjct: 277 TQKAFQFIEEGLDHITARSHKFYKE 301
Score = 53.3 bits (128), Expect = 4e-07
Identities = 15/132 (11%), Positives = 37/132 (28%), Gaps = 17/132 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVR----PD 1795
+++ + + + + ++ AL +
Sbjct: 122 GYYREAEKEL----PFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY 177
Query: 1796 DSRL---WNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGA 1846
R + + + ++A+ AL+L+ + N+ + G
Sbjct: 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD 237
Query: 1847 NTQAVEHFLTAL 1858
+ AVEHF A
Sbjct: 238 DQMAVEHFQKAA 249
Score = 51.4 bits (123), Expect = 2e-06
Identities = 13/104 (12%), Positives = 35/104 (33%), Gaps = 13/104 (12%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAYHT 1822
G+ EY +A+ +R A + + + ++ + + + ++
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166
Query: 1823 ALQL-------SPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
AL + S +++ + + +A+ H AL
Sbjct: 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210
Score = 46.0 bits (109), Expect = 1e-04
Identities = 31/239 (12%), Positives = 65/239 (27%), Gaps = 54/239 (22%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQ------EPDNAEVWLSLGISLAENE 1653
+ + F G + Q + AI Y A K+ + + AE + + +
Sbjct: 96 TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK 155
Query: 1654 QDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAY 1713
Q ++ + + L I + + A +D Y
Sbjct: 156 QTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDF---------KH--------Y 198
Query: 1714 KADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLF 1773
AL + L L A + + +
Sbjct: 199 D-KAL---------------------PHLEAALEL----AMDIQNDRFIAISLLNIANSY 232
Query: 1774 NLSDEYDKAVDCFRSALQVRPDDS-----RLWNRLGASLANGNRPEEAVEAYHTALQLS 1827
+ S + AV+ F+ A +V + ++ L +L + ++A + L
Sbjct: 233 DRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHI 291
Score = 39.4 bits (92), Expect = 0.011
Identities = 22/192 (11%), Positives = 55/192 (28%), Gaps = 22/192 (11%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
+ A+ +LEAA + + A L++ S + D A+ K
Sbjct: 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQK 247
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724
+ + + L+ + + + + +E +A
Sbjct: 248 AAKVSREKVPDLLPKVLF--GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLF 305
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLFNLSDEYDK 1781
L +LS + +++ ++ +F S +++
Sbjct: 306 LQA----VYKETVDERKIHDLLSYFEK-------KNLHAYIEACARSAAAVFESSCHFEQ 354
Query: 1782 AVDCFRSALQVR 1793
A +R L+ +
Sbjct: 355 AAAFYRKVLKAQ 366
Score = 31.3 bits (71), Expect = 3.6
Identities = 5/43 (11%), Positives = 14/43 (32%)
Query: 307 LTLCLIIEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTALN 349
L + + +++ + + +A+ H AL
Sbjct: 168 LDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALE 210
Score = 30.9 bits (70), Expect = 4.4
Identities = 17/121 (14%), Positives = 39/121 (32%), Gaps = 17/121 (14%)
Query: 738 LGVLFNLSDEYDKAVDCFRSALQV------RPDFTELLVYLFSSLDFQPPKQKISDPDEL 791
G+ EY +A+ +R A + + E + + +
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAY------YHMKQTHVS 160
Query: 792 RDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV-----DHRN 846
+ + ++++ + I + A + K D+A E AL++ + R
Sbjct: 161 MYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF 220
Query: 847 I 847
I
Sbjct: 221 I 221
Score = 29.8 bits (67), Expect = 8.9
Identities = 13/69 (18%), Positives = 21/69 (30%), Gaps = 3/69 (4%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
A+ +E + + + + Y E S + QA A K L +
Sbjct: 308 AVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
Query: 1670 PKNL--EAL 1676
L E L
Sbjct: 367 EDILKGECL 375
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
HET: PGE; 1.85A {Caenorhabditis elegans}
Length = 127
Score = 52.3 bits (126), Expect = 6e-08
Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 7/88 (7%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP-------GF 1830
+++KA + A+++ P + +N A + E V+ A+++
Sbjct: 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A G + AV+ F +L
Sbjct: 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSL 110
Score = 44.6 bits (106), Expect = 3e-05
Identities = 12/65 (18%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 1771 VLFNLSDEYDKAVDCFRSALQVRPDD-------SRLWNRLGASLANGNRPEEAVEAYHTA 1823
V F + + V A++V + ++ +R G + N AV+ +H +
Sbjct: 51 VYFEEKK-FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109
Query: 1824 LQLSP 1828
L
Sbjct: 110 LSEFR 114
Score = 42.7 bits (101), Expect = 1e-04
Identities = 12/92 (13%), Positives = 32/92 (34%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
LG +Q D A ++ + A + +P N + + E ++ + + K + +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG 72
Query: 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIR 1701
+ I+ + + L ++
Sbjct: 73 RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104
Score = 33.4 bits (77), Expect = 0.18
Identities = 13/100 (13%), Positives = 27/100 (27%), Gaps = 16/100 (16%)
Query: 1594 YTFA-EDNPMQNETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDN-------AEVW 1642
Y A E +P +N + + + E A + + A+
Sbjct: 31 YDKAIELDP----SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86
Query: 1643 LSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISIC 1682
G + + A+ + LS E + +
Sbjct: 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRDP-ELVKKVKEL 125
Score = 33.0 bits (76), Expect = 0.29
Identities = 12/65 (18%), Positives = 21/65 (32%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
D + LG + E+A Y A++L P + N + V+
Sbjct: 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQF 64
Query: 1854 FLTAL 1858
A+
Sbjct: 65 CEKAV 69
Score = 30.3 bits (69), Expect = 2.6
Identities = 23/121 (19%), Positives = 40/121 (33%), Gaps = 27/121 (22%)
Query: 747 EYDKAVDCFRSALQVRPDFTELL-----VYLFSSLDFQPPKQKISDPDE-LRDYQHRKRK 800
+++KA + A+++ P VY + E ++ + K
Sbjct: 23 DFEKAHVHYDKAIELDPSNITFYNNKAAVYF-----------EEKKFAECVQFCE----K 67
Query: 801 AFEDNIRKNRMVISNWIK-Y---AQWEESQKQVDRARSIYERALDVDHRNITLWLKYTEL 856
A E R+ R K + Q + A + R+L R+ L K EL
Sbjct: 68 AVEVG-RETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE-FRDPELVKKVKEL 125
Query: 857 E 857
E
Sbjct: 126 E 126
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat,
response regulator helix-turn-HELX binding, 3-helix
bundle; 2.30A {Bacillus subtilis}
Length = 383
Score = 56.0 bits (135), Expect = 6e-08
Identities = 19/134 (14%), Positives = 43/134 (32%), Gaps = 15/134 (11%)
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQV----- 1792
S + +Q +Y + F +Y+ A+ F+ A +
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLL---QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK 218
Query: 1793 -RPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLG 1845
R +G + ++ E+A+ + A+ + P +A + + LG
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLG 278
Query: 1846 ANTQAVEHFLTALN 1859
+A E+ +
Sbjct: 279 KIDKAHEYHSKGMA 292
Score = 55.6 bits (134), Expect = 8e-08
Identities = 13/105 (12%), Positives = 35/105 (33%), Gaps = 13/105 (12%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV-------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
+ + + ++D R A ++ + + + + + E+A+
Sbjct: 147 FKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISH 206
Query: 1820 YHTALQLS------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ A ++ R YN+G+ A+ +F A+
Sbjct: 207 FQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251
Score = 51.7 bits (124), Expect = 2e-06
Identities = 15/113 (13%), Positives = 34/113 (30%), Gaps = 13/113 (11%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEAY 1820
G+ EY A+ F+ A R + + + ++ S + +++
Sbjct: 107 FFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYA 166
Query: 1821 HTALQLS-------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
A ++ ++ + L A+ HF A + A
Sbjct: 167 RQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ 219
Score = 48.7 bits (116), Expect = 1e-05
Identities = 41/291 (14%), Positives = 87/291 (29%), Gaps = 59/291 (20%)
Query: 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSL 1645
+ A + F G +L Q + SAI + + A K + AE + +
Sbjct: 90 IDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKM 149
Query: 1646 GISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQE 1705
S +Q ++ + I ++ + + C + A L Q
Sbjct: 150 SESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDL---------KQ- 199
Query: 1706 SNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDV 1765
Y+ DA+ Q+ S+ A +
Sbjct: 200 -------YE-DAI---------------------SHFQKAYSM----AEAEKQPQLMGRT 226
Query: 1766 QNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRLGASLANGNRPEEAVEA 1819
+G+ N +Y+ A+ F+ A+ V P + + + + ++A E
Sbjct: 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286
Query: 1820 YHTALQLSP----GFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHD 1866
+ + S + + + G + +A++ F L + D
Sbjct: 287 HSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD 337
Score = 38.6 bits (90), Expect = 0.019
Identities = 23/192 (11%), Positives = 54/192 (28%), Gaps = 21/192 (10%)
Query: 1611 LGQEKLRQGDLPSAILYLEAA------AKQEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
L AI + + A KQ ++G+ Q AI +
Sbjct: 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKR 249
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTR 1724
+++ + L ++ + +H L + + S+
Sbjct: 250 AIAVF-EESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF 308
Query: 1725 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQ---NGLGVLFNLSDEYDK 1781
L + L ++ + + + + + D++ + ++ + K
Sbjct: 309 LKS--------LYLSGPDEEAIQGFFDFLES---KMLYADLEDFAIDVAKYYHERKNFQK 357
Query: 1782 AVDCFRSALQVR 1793
A F QVR
Sbjct: 358 ASAYFLKVEQVR 369
Score = 30.9 bits (70), Expect = 4.6
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 316 NQHGFVRARYNLGITCVHLGANTQAVEHFLTAL 348
R YN+G+ A+ +F A+
Sbjct: 219 QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251
Score = 29.8 bits (67), Expect = 9.0
Identities = 5/33 (15%), Positives = 10/33 (30%)
Query: 317 QHGFVRARYNLGITCVHLGANTQAVEHFLTALN 349
++ + L A+ HF A +
Sbjct: 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYS 212
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for
structu genomics, MCSG, tetratricopeptide repeat domain;
1.60A {Caenorhabditis elegans}
Length = 126
Score = 51.4 bits (124), Expect = 1e-07
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y A+ + A++ P+++ L+ NR A L + A++ T ++L F++
Sbjct: 28 DYPTAMRHYNEAVKRDPENAILYSNR-AACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
V + ++A + AL
Sbjct: 87 KAACLVAMREWSKAQRAYEDAL 108
Score = 46.1 bits (110), Expect = 9e-06
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARY 1835
E+ +A+ DC + +++ + + R A L +A AY ALQ+ P AR
Sbjct: 61 MEFQRALDDC-DTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEARE 119
Query: 1836 NL 1837
+
Sbjct: 120 GV 121
Score = 35.3 bits (82), Expect = 0.044
Identities = 10/67 (14%), Positives = 24/67 (35%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
+ + A+ + + + + ++ L + +A A L ++P N EA
Sbjct: 58 TKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEA 117
Query: 1676 LMAISIC 1682
+ C
Sbjct: 118 REGVRNC 124
Score = 29.5 bits (67), Expect = 4.3
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 16/104 (15%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDN-------AEVWLSLGISLAENEQDPQAIAALSK 1664
G E ++GD P+A+ + A K++P+N A L + +A+
Sbjct: 20 GNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLM-------EFQRALDDCDT 72
Query: 1665 CLSIEPKNLEALMAISICFTNEACLHDALDTLKD--KIRPGQES 1706
C+ ++ K ++ + + C A +D ++ P E
Sbjct: 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP:
a.118.8.1 PDB: 2bug_A
Length = 166
Score = 52.4 bits (126), Expect = 1e-07
Identities = 14/82 (17%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y+ A+ + A+++ P ++ + NR + A+ A++L +++ Y
Sbjct: 28 DYENAIKFYSQAIELNPSNAIYYGNR-SLAYLRTECYGYALGDATRAIELDKKYIKGYYR 86
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
+ + LG A+ + T +
Sbjct: 87 RAASNMALGKFRAALRDYETVV 108
Score = 45.1 bits (107), Expect = 5e-05
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
+ Y A+ D A+++ + + R AS + A+ Y T +++ P
Sbjct: 61 ECYGYALGDA-TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 113
Score = 35.0 bits (81), Expect = 0.11
Identities = 10/67 (14%), Positives = 22/67 (32%)
Query: 1616 LRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
LR A+ A + + + + S + A+ + ++P + +A
Sbjct: 58 LRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117
Query: 1676 LMAISIC 1682
M C
Sbjct: 118 KMKYQEC 124
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide
repeat (TPR), HSP90 CO-factor, protein BIN; NMR
{Saccharomyces cerevisiae}
Length = 111
Score = 50.8 bits (122), Expect = 2e-07
Identities = 14/90 (15%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGF 1830
LF Y +AV C+ + +P + + N+ +L +A++ L+ +
Sbjct: 14 LFKQGL-YREAVHCYDQLITAQPQNPVGYSNK-AMALIKLGEYTQAIQMCQQGLRYTSTA 71
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
L AV + +
Sbjct: 72 EHV-AIRSKLQYRLELAQGAVGSVQIPVVE 100
Score = 36.9 bits (86), Expect = 0.011
Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 4/103 (3%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G +QG A+ + +P N + + ++L + + QAI + L
Sbjct: 11 GNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYK 1714
+ + + E A+ +++ + E + P Y
Sbjct: 71 AEHVAIRSKLQYRLELA-QGAVGSVQIPV---VEVDELPEGYD 109
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain,
DNA-binding, transcription regulation, transmembrane;
1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Length = 372
Score = 54.3 bits (130), Expect = 2e-07
Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 37/269 (13%)
Query: 1578 FSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAA------ 1631
FS F + + + Y E + + + Q + R +I ++ A
Sbjct: 94 FSTFMVHDKIN-----YNIDEPSSSGKTLSIAFVNQRQYRAQQCFMSIKLVDNADGSTML 148
Query: 1632 ----AKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAI-----SIC 1682
+ + L SL++ P I P L +
Sbjct: 149 DKRYVITNGNQLAIQNDLLESLSKALNQPWPQRMQETLQKILPHRGALLTNFYQAHDYLL 208
Query: 1683 FTNEACLHDALDTLKD--KIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSRE 1740
++ L+ A + L + + P A KA L + + PL ++
Sbjct: 209 HGDDKSLNRASELLGEIVQSSPE---FTYARAEKA---------LVDIVRHSQHPLDEKQ 256
Query: 1741 IHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLW 1800
+ L+ ++ P + + V + + D++ + + + +
Sbjct: 257 LAA--LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNY 313
Query: 1801 NRLGASLANGNRPEEAVEAYHTALQLSPG 1829
LG EA +AY TA L PG
Sbjct: 314 VLLGKVYEMKGMNREAADAYLTAFNLRPG 342
Score = 47.8 bits (113), Expect = 3e-05
Identities = 16/112 (14%), Positives = 39/112 (34%), Gaps = 14/112 (12%)
Query: 1761 IDPD---VQNGLGVLFNL--------SDEYDKAVDCFRSALQVR--PDDSRLWNRLGASL 1807
P+ + ++ + + + + + + S ++ S
Sbjct: 228 SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSA 287
Query: 1808 ANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+ +E+ +A +T + L ++ LG G N +A + +LTA N
Sbjct: 288 LVKGKTDESYQAINTGIDLEMSWL-NYVLLGKVYEMKGMNREAADAYLTAFN 338
Score = 41.6 bits (97), Expect = 0.002
Identities = 32/215 (14%), Positives = 61/215 (28%), Gaps = 37/215 (17%)
Query: 1621 LPSAILYLEAAAKQEPDNAEVWLSLG-----ISLAENEQDPQAIAALSKCLSIEPKNLEA 1675
P E K P + + + +++ +A L + + P+ A
Sbjct: 176 QPWPQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYA 235
Query: 1676 LMAISICFTNEACLHD-------ALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANH 1728
++ H AL+T D I E N Y+ A
Sbjct: 236 RAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQI---------KAVS 286
Query: 1729 TLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQN--GLGVLFNLSDEYDKAVDCF 1786
L S + + L + N LG ++ + +A D +
Sbjct: 287 ALVKGKTDESYQAINTGIDL-------------EMSWLNYVLLGKVYEMKGMNREAADAY 333
Query: 1787 RSALQVRPDDSRL-WNRLGASLANGNRPEEAVEAY 1820
+A +RP + L W G + ++ +
Sbjct: 334 LTAFNLRPGANTLYWIENGIFQTSVPYVVPYLDKF 368
Score = 39.7 bits (92), Expect = 0.008
Identities = 16/140 (11%), Positives = 41/140 (29%), Gaps = 4/140 (2%)
Query: 746 DEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDN 805
++A + +Q P+FT + + + +
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272
Query: 806 IRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNRQVNH 865
+ ++ A + + D + +D++ + L EM+
Sbjct: 273 LNNLSIIYQI---KAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMN-RE 328
Query: 866 ARNLWDRAVTILPRANQFWY 885
A + + A + P AN ++
Sbjct: 329 AADAYLTAFNLRPGANTLYW 348
Score = 37.8 bits (87), Expect = 0.033
Identities = 10/117 (8%), Positives = 27/117 (23%), Gaps = 1/117 (0%)
Query: 1567 LGSGESLPHQWFSDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAIL 1626
+ + H + + + + L +G +
Sbjct: 239 KALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298
Query: 1627 YLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEALMAISICF 1683
+ E + ++ LG + +A A ++ P + F
Sbjct: 299 AINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWIENGIF 354
Score = 36.2 bits (83), Expect = 0.11
Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 5/96 (5%)
Query: 1787 RSALQVRPDDSRLWN-----RLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITC 1841
+ ++ P L + A E +Q SP F AR +
Sbjct: 184 ETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVD 243
Query: 1842 VHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRA 1877
+ + E L ALN + L
Sbjct: 244 IVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSII 279
Score = 32.8 bits (74), Expect = 1.1
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 729 SIDPDVQN--GLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSLDFQ 779
++ N LG ++ + +A D + +A +RP L Y + FQ
Sbjct: 305 DLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTL--YWIENGIFQ 355
Score = 32.4 bits (73), Expect = 1.4
Identities = 7/72 (9%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 694 LANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVD 753
L + + PL +++ L+ ++ P + + V + + D++
Sbjct: 241 LVDIVRHSQHPLDEKQLAA--LNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQ 298
Query: 754 CFRSALQVRPDF 765
+ + + +
Sbjct: 299 AINTGIDLEMSW 310
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural
genomics, PSI-2, protein structure initiative; NMR
{Bacteroides fragilis}
Length = 99
Score = 49.7 bits (119), Expect = 2e-07
Identities = 12/64 (18%), Positives = 28/64 (43%), Gaps = 3/64 (4%)
Query: 1778 EYDKAVDCFRSALQVRPDDS-RLWNRLGASLANGNRPEEAVEAYHTALQLSPGF--VRAR 1834
+ + A+ LQ P + +G + ++A+ Y +A++L+P ++AR
Sbjct: 15 DIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR 74
Query: 1835 YNLG 1838
+
Sbjct: 75 KMVM 78
Score = 46.6 bits (111), Expect = 3e-06
Identities = 15/77 (19%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 1609 FALGQEKLRQGDLPSAILYLEAAAKQEPDN-AEVWLSLGISLAENEQDPQAIAALSKCLS 1667
+E + QGD+ +A+ LE + EP E + +G + + +A+ +
Sbjct: 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63
Query: 1668 IEPKNLEA---LMAISI 1681
+ P + M + I
Sbjct: 64 LNPDSPALQARKMVMDI 80
Score = 40.8 bits (96), Expect = 3e-04
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 1803 LGASLANGNRPEEAVEAYHTALQLSPG-FVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L N E A++A LQ P A Y +G LG +A+ ++ +A+
Sbjct: 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
Score = 29.6 bits (67), Expect = 2.8
Identities = 10/69 (14%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 1760 SIDPD----VQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEE 1815
+P +G + ++ KA++ ++SA+++ PD +L +
Sbjct: 28 QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS--------PALQARKMVMD 79
Query: 1816 AVEAYHTAL 1824
+ Y+ +
Sbjct: 80 ILNFYNKDM 88
Score = 28.9 bits (65), Expect = 4.9
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 312 IIEVNQHGFVRARYNLGITCVHLGANTQAVEHFLTAL 348
++ G A Y +G LG +A+ ++ +A+
Sbjct: 26 FLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3
ligase, ubiquitinylation, TPR, heat-shock protein
complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Length = 281
Score = 51.5 bits (123), Expect = 1e-06
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y +A C+ A+ P + + NR +PE+A+ AL+L V+A +
Sbjct: 19 KYPEAAACYGRAITRNPLVAVYYTNR-ALCYLKMQQPEQALADCRRALELDGQSVKAHFF 77
Query: 1837 LGITCVHLGANTQAVEHFLTAL 1858
LG + + + +A+ + A
Sbjct: 78 LGQCQLEMESYDEAIANLQRAY 99
Score = 40.3 bits (94), Expect = 0.005
Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+ ++A+ DC R AL++ + LG +EA+ A L+
Sbjct: 52 QQPEQALADC-RRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103
Score = 38.0 bits (88), Expect = 0.025
Identities = 19/137 (13%), Positives = 46/137 (33%), Gaps = 1/137 (0%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
G P A A + P A + + + + +Q QA+A + L ++ +
Sbjct: 11 GNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ 70
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731
+++A + C +A+ L+ + + + + +++
Sbjct: 71 SVKAHFFLGQCQLEMESYDEAIANLQ-RAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE 129
Query: 1732 FRSPLSSREIHQQVLSL 1748
R E+H + L
Sbjct: 130 ERRIHQESELHSYLTRL 146
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical
repeat, protein binding, chaperone; 1.90A {Homo sapiens}
SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Length = 131
Score = 48.1 bits (115), Expect = 2e-06
Identities = 11/88 (12%), Positives = 28/88 (31%), Gaps = 7/88 (7%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG-------F 1830
++D A+ + A ++ P + A + E A+++
Sbjct: 19 DFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78
Query: 1831 VRARYNLGITCVHLGANTQAVEHFLTAL 1858
+A +G + A+ + +L
Sbjct: 79 AKAYARIGNSYFKEEKYKDAIHFYNKSL 106
Score = 43.1 bits (102), Expect = 9e-05
Identities = 10/58 (17%), Positives = 27/58 (46%), Gaps = 7/58 (12%)
Query: 1778 EYDKAVDCFRSALQVRPDD-------SRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
+Y+K + A++V ++ ++ + R+G S + ++A+ Y+ +L
Sbjct: 53 DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
Score = 36.5 bits (85), Expect = 0.016
Identities = 15/92 (16%), Positives = 33/92 (35%)
Query: 1610 ALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
LG + ++ D +A+ + + A + +P N + E + K + +
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG 68
Query: 1670 PKNLEALMAISICFTNEACLHDALDTLKDKIR 1701
+N E I+ + + + KD I
Sbjct: 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIH 100
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium
(SGC), motor PR transport protein; 2.80A {Homo sapiens}
Length = 311
Score = 47.1 bits (113), Expect = 3e-05
Identities = 26/136 (19%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 1742 HQQVLSLYLNAARQCPSQSIDPDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR----- 1793
H S N Q P + L + + Y+ AV + AL+
Sbjct: 4 HHHHSSGRENLYFQGGGYE-IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSG 62
Query: 1794 ---PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS--------PGFVRARYNLGITCV 1842
PD + + N L + N+ ++A + AL + P NL +
Sbjct: 63 HDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG 122
Query: 1843 HLGANTQAVEHFLTAL 1858
G +A AL
Sbjct: 123 KRGKYKEAEPLCKRAL 138
Score = 46.0 bits (110), Expect = 7e-05
Identities = 28/117 (23%), Positives = 44/117 (37%), Gaps = 19/117 (16%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGN 1811
P V N L VL+ +Y +A + AL++R PD ++ N L N
Sbjct: 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG 167
Query: 1812 RPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+ EE Y AL++ P + + NL + G QA + L +
Sbjct: 168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224
Score = 45.6 bits (109), Expect = 1e-04
Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 18/115 (15%)
Query: 1762 DPDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR---------PDDSRLWNRLGASLAN 1809
DP+V +N L + ++ +A ++ L ++ +W
Sbjct: 191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREEC 250
Query: 1810 GNRPEEAVEAYHTALQL------SPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ ++ SP NLG G A A+
Sbjct: 251 KGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAM 305
Score = 31.4 bits (72), Expect = 2.9
Identities = 7/73 (9%), Positives = 14/73 (19%), Gaps = 9/73 (12%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR------PDDSRLWNRLGASLANGNRP 1813
+ + + P + LGA +
Sbjct: 235 DENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKF 294
Query: 1814 EEAVEAYHTALQL 1826
E A A++
Sbjct: 295 EAAETLEEAAMRS 307
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein
structure initiative, PSI, center for eukaryotic
structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Length = 307
Score = 46.8 bits (111), Expect = 4e-05
Identities = 26/211 (12%), Positives = 57/211 (27%), Gaps = 30/211 (14%)
Query: 1639 AEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE------ALMAISICFTNEACLHDA 1692
A + ++ +Q QA A + N A + + + +A
Sbjct: 36 ASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEA 95
Query: 1693 LDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNA 1752
+ ++ E+ +A A L R L + + LY A
Sbjct: 96 VQYIEKASVMYVENGTPDTAAMA------LDRAGK--------LMEPLDLSKAVHLYQQA 141
Query: 1753 ARQCPSQSIDP---DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDDSRLWNRL 1803
A ++ ++ L ++D+A + + P +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 1804 GASLANGNRPEEAVEAYHTALQLSPGFVRAR 1834
+ A + + + PGF +
Sbjct: 202 VLVQLHRADYVAAQKCVRESYSI-PGFSGSE 231
Score = 45.3 bits (107), Expect = 1e-04
Identities = 17/132 (12%), Positives = 40/132 (30%), Gaps = 17/132 (12%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDD--- 1796
+ ++ +Y+ P + + G L D KAV ++ A V ++
Sbjct: 97 QYIEKASVMYVENGT--PDTAAM--ALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERL 151
Query: 1797 ---SRLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGAN 1847
+ L + L + +EA + + P + + +H
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADY 211
Query: 1848 TQAVEHFLTALN 1859
A + + +
Sbjct: 212 VAAQKCVRESYS 223
Score = 44.9 bits (106), Expect = 2e-04
Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 11/105 (10%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRP------DDSRLWNRLGASLANGNRPEEAVEAY 1820
V F + + ++A D + + ++ + + G L + R EAV+
Sbjct: 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYI 99
Query: 1821 HTALQL-----SPGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
A + +P + + ++AV + A
Sbjct: 100 EKASVMYVENGTPDTAAMALDRAGKLMEPLDLSKAVHLYQQAAAV 144
Score = 40.3 bits (94), Expect = 0.004
Identities = 20/166 (12%), Positives = 48/166 (28%), Gaps = 20/166 (12%)
Query: 736 NGLGVLFNLSDEYDKAVDCFRSALQVRP------DFTELLVYLFSSLDFQPPKQKISDPD 789
V F + + ++A D + + + L + +
Sbjct: 40 AKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML------KDLQRMP 93
Query: 790 ELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDV-----DH 844
E Y + + +N + + E + +A +Y++A V
Sbjct: 94 EAVQYIEKASVMYVEN-GTPDTAAMALDRAGKLMEPLD-LSKAVHLYQQAAAVFENEERL 151
Query: 845 RNIT-LWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKYTY 889
R L K + L +R ++ + A + ++ + Y
Sbjct: 152 RQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197
Score = 38.0 bits (88), Expect = 0.027
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 20/94 (21%)
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP--- 1828
+YD A + + + N + E+A +AY +
Sbjct: 25 FMKWKPDYDSAASEY--------------AKAAVAFKNAKQLEQAKDAYLQEAEAHANNR 70
Query: 1829 ---GFVRARYNLGITCVHLGANTQAVEHFLTALN 1859
+A G+ L +AV++ A
Sbjct: 71 SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104
Score = 37.6 bits (87), Expect = 0.037
Identities = 17/142 (11%), Positives = 38/142 (26%), Gaps = 11/142 (7%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDV---QNGLGVLFNLSDEYDKAVDCFRSALQV---RPD 764
+Q YL A + G++ +AV A +
Sbjct: 52 LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT 111
Query: 765 FTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQWEE 824
+ L + + D + + FE+ + R K ++
Sbjct: 112 PDTAAMALDRAGKLM----EPLDLSKAVHLYQQAAAVFEN-EERLRQAAELIGKASRLLV 166
Query: 825 SQKQVDRARSIYERALDVDHRN 846
Q++ D A + ++ +
Sbjct: 167 RQQKFDEAAASLQKEKSMYKEM 188
Score = 34.5 bits (79), Expect = 0.28
Identities = 11/81 (13%), Positives = 22/81 (27%), Gaps = 13/81 (16%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAK------QEPDNAEVWLSLGISLAENEQDPQAIAALSK 1664
+ +RQ A L+ P + ++ + A + +
Sbjct: 161 ASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220
Query: 1665 CLSI-------EPKNLEALMA 1678
SI + LE L+
Sbjct: 221 SYSIPGFSGSEDCAALEDLLQ 241
Score = 34.1 bits (78), Expect = 0.46
Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 7/85 (8%)
Query: 1616 LRQGDLPSAI-LYLEAAAKQEPDN-----AEVWLSLGISLAENEQDPQAIAALSKCLSIE 1669
+ DL A+ LY +AAA E + AE+ L ++ +A A+L K S+
Sbjct: 126 MEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185
Query: 1670 PKNLEALMAISICFTNEACLHDALD 1694
K +E + +
Sbjct: 186 -KEMENYPTCYKKCIAQVLVQLHRA 209
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide
repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 148
Score = 44.7 bits (106), Expect = 4e-05
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 1777 DEYDKAV-DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
++YDKA + A++ D + R +L R ++AV + L P
Sbjct: 79 EDYDKAETEA-SKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131
Score = 40.0 bits (94), Expect = 0.001
Identities = 20/85 (23%), Positives = 31/85 (36%), Gaps = 5/85 (5%)
Query: 1778 EYDKAVDCFRSALQVRP---DDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRA 1833
+Y A+ + AL + D + L NR A ++A A++ G V+A
Sbjct: 43 DYGGALAAYTQALGLDATPQDQAVLHRNR-AACHLKLEDYDKAETEASKAIEKDGGDVKA 101
Query: 1834 RYNLGITCVHLGANTQAVEHFLTAL 1858
Y LG QAV +
Sbjct: 102 LYRRSQALEKLGRLDQAVLDLQRCV 126
Score = 32.7 bits (75), Expect = 0.41
Identities = 15/65 (23%), Positives = 29/65 (44%)
Query: 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
L+ D A A +++ + + +L + + QA+ L +C+S+EPKN
Sbjct: 75 HLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKV 134
Query: 1675 ALMAI 1679
A+
Sbjct: 135 FQEAL 139
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR
domain, ATPase, protein secret protein transport; 2.00A
{Mycobacterium tuberculosis}
Length = 282
Score = 45.9 bits (108), Expect = 8e-05
Identities = 21/142 (14%), Positives = 44/142 (30%), Gaps = 4/142 (2%)
Query: 1723 TRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKA 1782
+R L+ +S ++ ++ L P S + G Y A
Sbjct: 63 SRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPL-AITMGFAACEAAQGNYADA 121
Query: 1783 VDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVR--ARYNLGIT 1840
++ +A + W + R + ++ +A + F+ A G+
Sbjct: 122 MEALEAAPVAGSEHLVAWMK-AVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA 180
Query: 1841 CVHLGANTQAVEHFLTALNQQA 1862
+L T+A A + A
Sbjct: 181 AANLALFTEAERRLTEANDSPA 202
Score = 29.7 bits (66), Expect = 8.6
Identities = 5/56 (8%), Positives = 11/56 (19%)
Query: 711 HQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFT 766
+ A ++ + L + AV P+
Sbjct: 187 FTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPK 242
Score = 29.7 bits (66), Expect = 9.2
Identities = 17/136 (12%), Positives = 37/136 (27%), Gaps = 5/136 (3%)
Query: 1092 GTFQNMCPMLEGDLVQSFLLRHLEAAAKQEPDNAEVWLSLGISLAENEQLLGEFWEH--N 1149
F++ ML +S L + + W+ + L W N
Sbjct: 9 SLFESAVSMLPMSEARS--LDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRN 66
Query: 1150 LGNMQQAFRM-DNLLAEMRDIEAASQRPKPQQSAPISLLARQDDAREWANQFLEAGSHFE 1208
G + + ++ + L I ++P+++ + +A E
Sbjct: 67 FGQLSGSVQISMSTLNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALE 126
Query: 1209 HTPPETIWDNAPIMRG 1224
P M+
Sbjct: 127 AAPVAGSEHLVAWMKA 142
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus
RIMD 22 structural genomics, PSI-2, protein structure
initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Length = 176
Score = 44.2 bits (104), Expect = 1e-04
Identities = 18/101 (17%), Positives = 36/101 (35%), Gaps = 1/101 (0%)
Query: 1600 NPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAI 1659
N +E E L+QG+ A+ ++ + + +V L+ L E +Q A
Sbjct: 2 NASPDE-QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQ 60
Query: 1660 AALSKCLSIEPKNLEALMAISICFTNEACLHDALDTLKDKI 1700
L+ N + + +A L L+ ++
Sbjct: 61 ELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQEL 101
Score = 34.2 bits (78), Expect = 0.22
Identities = 8/61 (13%), Positives = 15/61 (24%), Gaps = 2/61 (3%)
Query: 1794 PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLGANTQAVEH 1853
PD+ L + + L +A+ T + + A E
Sbjct: 5 PDEQLL--KQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQEL 62
Query: 1854 F 1854
Sbjct: 63 L 63
Score = 33.4 bits (76), Expect = 0.43
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 34/124 (27%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAY----------------- 1820
E+ +A++ ++ + L + E A E
Sbjct: 21 EHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIA 80
Query: 1821 -----------------HTALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAA 1863
L +P L + +G + +A+E L
Sbjct: 81 KLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140
Query: 1864 THDG 1867
DG
Sbjct: 141 AQDG 144
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural
genomics, joint CENT structural genomics, JCSG, protein
structure initiative; 2.54A {Chlorobium tepidum} SCOP:
a.118.8.8
Length = 159
Score = 43.3 bits (101), Expect = 2e-04
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLW----NRLGASLANGNRPEEAVEAYHTALQLSP 1828
DKA+ F ++ D+ +LW +L R EA+ + +++
Sbjct: 78 HSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133
Score = 40.3 bits (93), Expect = 0.001
Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 23/104 (22%)
Query: 1778 EYDKAVDCFRSALQVRPD------------DSRLWNRLGASLANGNRPEEAVEAYHTALQ 1825
EYD+A R A+++ D+ L +LA +EA+ + AL
Sbjct: 26 EYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALH 85
Query: 1826 LSPG-----------FVRARYNLGITCVHLGANTQAVEHFLTAL 1858
++ A Y+ + LG +A+ F +
Sbjct: 86 YFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural
genomics, PSI, protein struct initiative; 2.40A {Vibrio
parahaemolyticus} SCOP: e.61.1.1
Length = 273
Score = 44.6 bits (105), Expect = 2e-04
Identities = 17/92 (18%), Positives = 30/92 (32%)
Query: 1613 QEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
+ L +G L A+ L A K P +A + S L + +A L + + + P+
Sbjct: 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64
Query: 1673 LEALMAISICFTNEACLHDALDTLKDKIRPGQ 1704
L + D G+
Sbjct: 65 LPGASQLRHLVKAAQARKDFAQGAATAKVLGE 96
Score = 32.2 bits (73), Expect = 1.5
Identities = 12/59 (20%), Positives = 24/59 (40%)
Query: 1780 DKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLG 1838
+A++ A++ P D+ L + L E A E +++L P ++ L
Sbjct: 14 QQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLR 72
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide
repeat like, TPR-like, transport protein; NMR
{Arabidopsis thaliana} SCOP: a.118.8.1
Length = 158
Score = 42.4 bits (99), Expect = 3e-04
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 21/104 (20%)
Query: 1779 YDKAVDCFRSALQVRPDDSRLWNRLGASLAN----------GNRPEEAVEAYHTALQLSP 1828
+++ + + P D+ R G L +EA+ + AL + P
Sbjct: 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP 77
Query: 1829 GFVRARYNLGITCVHLGANT-----------QAVEHFLTALNQQ 1861
A + +G T A + F A+++Q
Sbjct: 78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121
Score = 32.8 bits (74), Expect = 0.46
Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 10/76 (13%)
Query: 1624 AILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQ----------AIAALSKCLSIEPKNL 1673
E K P +A+ G L E Q AI + L I+PK
Sbjct: 21 IRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD 80
Query: 1674 EALMAISICFTNEACL 1689
EA+ I +T+ A L
Sbjct: 81 EAVWCIGNAYTSFAFL 96
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics,
structural genomics conso SGC, microtubule, motor
protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Length = 283
Score = 44.1 bits (105), Expect = 3e-04
Identities = 27/117 (23%), Positives = 43/117 (36%), Gaps = 19/117 (16%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGN 1811
P V N L VL+ +Y +A + AL++R PD ++ N L N
Sbjct: 82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQG 141
Query: 1812 RPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLGANTQAVEHFLTALNQ 1860
+ EE Y AL++ P + + NL + G A + L +
Sbjct: 142 KAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198
Score = 42.9 bits (102), Expect = 7e-04
Identities = 24/115 (20%), Positives = 42/115 (36%), Gaps = 19/115 (16%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGN 1811
PDV N L +++ ++Y +A AL +R P + N L
Sbjct: 40 PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99
Query: 1812 RPEEAVEAYHTALQLS--------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ +EA AL++ P + NL + C + G + ++ AL
Sbjct: 100 KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154
Score = 39.8 bits (94), Expect = 0.006
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 16/97 (16%)
Query: 1778 EYDKAVDCFRSALQVR--------PDDSRLWNRLGASLANGNRPEEAVEAYHTALQLS-- 1827
AV + AL+ PD + + N L + N+ +EA + AL +
Sbjct: 16 PRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREK 75
Query: 1828 ------PGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P NL + G +A AL
Sbjct: 76 TLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112
Score = 33.7 bits (78), Expect = 0.51
Identities = 9/72 (12%), Positives = 15/72 (20%), Gaps = 9/72 (12%)
Query: 1763 PDV---QNGLGVLFNLSDEYDKAVDCFRSALQVR------PDDSRLWNRLGASLANGNRP 1813
D D+ + + P + LGA +
Sbjct: 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKL 268
Query: 1814 EEAVEAYHTALQ 1825
E A A +
Sbjct: 269 EAAHTLEDCASR 280
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide
repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo
sapiens} SCOP: a.118.8.1
Length = 497
Score = 44.6 bits (104), Expect = 3e-04
Identities = 15/84 (17%), Positives = 33/84 (39%)
Query: 1769 LGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSP 1828
LG + ++ +A +R A Q+ P + + +N+L ++ + Y ++ +
Sbjct: 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 1829 GFVRARYNLGITCVHLGANTQAVE 1852
F A NL + V+
Sbjct: 218 PFPAASTNLQKALSKALESRDEVK 241
Score = 35.7 bits (81), Expect = 0.15
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 2/92 (2%)
Query: 1767 NGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQL 1826
+ LG++ N V S+ LG N+ +A Y A QL
Sbjct: 124 SQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL 181
Query: 1827 SPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
P + L I G + + ++ ++
Sbjct: 182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSI 213
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein
superhelix, transc activator; 1.45A {Escherichia coli}
SCOP: a.118.8.2
Length = 373
Score = 43.8 bits (103), Expect = 4e-04
Identities = 41/328 (12%), Positives = 86/328 (26%), Gaps = 56/328 (17%)
Query: 1592 HEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDNAEVW-----LSLG 1646
HE ++ M E NA Q + G+ A + A ++ P LG
Sbjct: 2 HEIKDIREDTMHAEFNAL-RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLG 60
Query: 1647 ISLAENEQDPQAIAALSKCLSIEPKN------LEALMAISICFTNEACLHDALDTLKDKI 1700
L + +++A + + + ++ L +L+ S + L A +T +
Sbjct: 61 EVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAF 120
Query: 1701 RPGQESNPRPSAYKADALPSKLTRL---------ANHTLTFRSPLSSREIHQQVLSLYLN 1751
+ E + + +L A + + S QQ L
Sbjct: 121 QLINEQHLEQLPMHEFLVRI-RAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 179
Query: 1752 AARQCPSQ------------------------SIDPDVQNGLGVLFNLSDEYDKAVDCFR 1787
+ ++ + + + ++ + A + R
Sbjct: 180 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR 239
Query: 1788 SALQVRPDDSRL----WNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNL 1837
+ ++ W + + E A + + R L
Sbjct: 240 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLL 299
Query: 1838 GITCVHLGANTQAVEHFLTALNQQAATH 1865
G + A L AL T
Sbjct: 300 NQLYWQAGRKSDAQRVLLDALKLANRTG 327
Score = 40.7 bits (95), Expect = 0.004
Identities = 15/105 (14%), Positives = 25/105 (23%), Gaps = 11/105 (10%)
Query: 1777 DEYDKAVDCFRSALQVRPDDSRLW-----NRLGASLANGNRPEEAVEAYHTALQLS---- 1827
D+A + AL+ P + LG L ++ Q++
Sbjct: 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87
Query: 1828 --PGFVRARYNLGITCVHLGANTQAVEHFLTALNQQAATHDGLTP 1870
+ + G A E A H P
Sbjct: 88 VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLP 132
Score = 30.7 bits (69), Expect = 5.8
Identities = 18/139 (12%), Positives = 40/139 (28%), Gaps = 9/139 (6%)
Query: 746 DEYDKAVDCFRSALQVRPD---FTELLVYLFSSLDFQPPKQKISDPDELRDYQHRKRKAF 802
D+A + AL+ P ++ ++ + + +
Sbjct: 28 GNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH----CKGELTRSLALMQQTEQMA 83
Query: 803 EDNIRKNRMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNITLWLKYTELEMRNR- 861
+ + I+ ++ +Q + A E+A + + L E +R R
Sbjct: 84 RQ-HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRA 142
Query: 862 QVNHARNLWDRAVTILPRA 880
Q+ A D A
Sbjct: 143 QLLWAWARLDEAEASARSG 161
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Length = 681
Score = 41.8 bits (98), Expect = 0.002
Identities = 26/153 (16%), Positives = 43/153 (28%), Gaps = 10/153 (6%)
Query: 1700 IRPGQESNPRPSAYKADALPSKLTRLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQ 1759
+ + + AL L + + + Q + SL AAR
Sbjct: 366 LDGQVHAEKLTANEIVTALSVPLVDPTDVAASVLQATVLSQPVQTLDSL--RAARHGALD 423
Query: 1760 SIDPDVQNGLGVLFNL------SDEYDKAVDCFRSALQVRPDDSRL-WNRLGASLANGNR 1812
+ D + + + KA + RL W R A L G
Sbjct: 424 ADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG-D 482
Query: 1813 PEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
+ A + + L PG + + L T G
Sbjct: 483 YDSATKHFTEVLDTFPGELAPKLALAATAELAG 515
Score = 35.2 bits (81), Expect = 0.27
Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 1/83 (1%)
Query: 1770 GVLFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
V L+ +YD A F L P + L A+ +E + Y T + G
Sbjct: 474 AVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEH-KFYQTVWSTNDG 532
Query: 1830 FVRARYNLGITCVHLGANTQAVE 1852
+ A + L G AV
Sbjct: 533 VISAAFGLARARSAEGDRVGAVR 555
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens}
SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Length = 336
Score = 40.6 bits (95), Expect = 0.004
Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
+ L+ +LN A C + A++ AL++ ++ +
Sbjct: 190 KAQALRLASHLNLA-MC----------------HLKLQAFSAAIESCNKALELDSNNEKG 232
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
+R G + N E A + LQL P
Sbjct: 233 LSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Score = 38.7 bits (90), Expect = 0.014
Identities = 14/68 (20%), Positives = 25/68 (36%)
Query: 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
L+ +AI A + + +N + G + A A K L + P N
Sbjct: 206 HLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA 265
Query: 1675 ALMAISIC 1682
A +++C
Sbjct: 266 AKTQLAVC 273
Score = 37.2 bits (86), Expect = 0.053
Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 15/96 (15%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG---------------NRPEEAVEAYHT 1822
+Y +A+ ++ + +S N A+E+ +
Sbjct: 162 KYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNK 221
Query: 1823 ALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
AL+L + G + + A F L
Sbjct: 222 ALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVL 257
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A
{Xanthomonas campestris}
Length = 129
Score = 37.8 bits (88), Expect = 0.006
Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)
Query: 1595 TFAEDNPMQNET-NA-FALGQEKLRQGDLPSAILYLEAAAKQEPDN---AEVWLSLGISL 1649
+F E P T NA + LG+ + A + P + A L LG+S
Sbjct: 27 SFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86
Query: 1650 AENEQDPQAIAALSKCLSIEPKNLEALMA 1678
++ +A L + + P + A +A
Sbjct: 87 YGEGKNTEAQQTLQQVATQYPGSDAARVA 115
Score = 33.1 bits (76), Expect = 0.29
Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 15/97 (15%)
Query: 1605 ETNAFALGQEKLRQGDLPSAILYLEAAAKQEPD-----NAEVWLSLGISLAENEQDPQAI 1659
A+ + + L+ G A + + P+ NA W LG S A
Sbjct: 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYW--LGESYYATRNFQLAE 59
Query: 1660 AALSKCLSIEPKNL---EALMAISICF-----TNEAC 1688
A +S P + L+ + + EA
Sbjct: 60 AQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQ 96
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 38.5 bits (89), Expect = 0.011
Identities = 19/140 (13%), Positives = 45/140 (32%), Gaps = 25/140 (17%)
Query: 786 SDPDELRDYQHRKRKAFEDNIRKNRMV---ISNWIKYAQWEE-----SQKQVDRARSIYE 837
+ ++ ++R E I + + + WI Y +W + + ++ E
Sbjct: 42 NHTEKEVAGLQKERMGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLE 101
Query: 838 RALDV---------DHRNITLWLKYTELEMRNRQVNHARNLWDRAVT--ILPRANQFWYK 886
R D R + +W++Y ++ L+ I ++ F+ +
Sbjct: 102 RCTREFVRNPLYKDDVRYLRIWMQYVNY------IDEPVELFSFLAHHHIGQESSIFYEE 155
Query: 887 YTYMEEMLENVAGKLFVFHR 906
Y E V+ +
Sbjct: 156 YANYFESRGLFQKADEVYQK 175
Score = 36.6 bits (84), Expect = 0.049
Identities = 13/94 (13%), Positives = 33/94 (35%), Gaps = 4/94 (4%)
Query: 793 DYQHRKRKAFEDNIRKN--RMVISNWIKYAQWEESQKQVDRARSIYERALDVDHRNI-TL 849
+Y + F + + + +YA + ES+ +A +Y++ + +
Sbjct: 128 NYIDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFLRF 187
Query: 850 WLKYTELEMRNRQVNHARNLWDRAVTILPRANQF 883
KY + R + ++ ++ P F
Sbjct: 188 QQKYQQFTHRWLE-FAPQSFSSNTNSVNPLQTTF 220
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus
thuringiensis serovar ISRAELE35646}
Length = 293
Score = 38.6 bits (89), Expect = 0.014
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 13/126 (10%)
Query: 1743 QQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS----- 1797
L LN + ++N + ++ + K +D F L+
Sbjct: 135 ILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEF 194
Query: 1798 --RLWNRLGASLANGNRPEEAVEAYHTALQLS------PGFVRARYNLGITCVHLGANTQ 1849
++ +L +R EE++ + A+++S + Y G L
Sbjct: 195 DVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEA 254
Query: 1850 AVEHFL 1855
+E
Sbjct: 255 EIEDAY 260
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats,
isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1
d.26.1.1 PDB: 1kt1_A 3o5d_A
Length = 457
Score = 38.9 bits (90), Expect = 0.017
Identities = 14/68 (20%), Positives = 26/68 (38%)
Query: 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
L+ + A+ + A + N + G + + A K L + P+N
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386
Query: 1675 ALMAISIC 1682
A + IS+C
Sbjct: 387 ARLQISMC 394
Score = 37.7 bits (87), Expect = 0.037
Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 8/89 (8%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLWNRLGASLANG--------NRPEEAVEAYHTALQLSPG 1829
+Y K V + +S+ + +AVE AL L
Sbjct: 290 QYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349
Query: 1830 FVRARYNLGITCVHLGANTQAVEHFLTAL 1858
+ Y G + + A F L
Sbjct: 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
Score = 35.8 bits (82), Expect = 0.16
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 17/90 (18%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
+L+ +LN A C + EY KAV+C AL + + +
Sbjct: 311 ASESFLLAAFLNLA-MC----------------YLKLREYTKAVECCDKALGLDSANEKG 353
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
R G + N E A + L+++P
Sbjct: 354 LYRRGEAQLLMNEFESAKGDFEKVLEVNPQ 383
Score = 32.0 bits (72), Expect = 2.4
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 7/58 (12%)
Query: 1591 MHEYTFAEDNPMQ----NETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDNAEV 1641
+ EYT A + + + N L G+ +L + SA E + P N
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAA 387
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C,
TPR-containing domain, structural genomics; 1.63A
{Plasmodium falciparum} SCOP: a.118.8.1
Length = 198
Score = 37.4 bits (87), Expect = 0.019
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 17/106 (16%)
Query: 1724 RLANHTLTFRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAV 1783
HT + + + +S LN A C +N + +Y KA+
Sbjct: 66 DFFIHTEEWDDQILLDKKKNIEISCNLNLA-TC----------------YNKNKDYPKAI 108
Query: 1784 DCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
D L++ ++ + +LG + EEA E + A L+P
Sbjct: 109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 154
Score = 32.4 bits (74), Expect = 0.83
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 16/97 (16%)
Query: 1778 EYDKAVDCFRSALQVRPDDSR----------------LWNRLGASLANGNRPEEAVEAYH 1821
E ++A+ ++ AL L +A++
Sbjct: 53 EINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS 112
Query: 1822 TALQLSPGFVRARYNLGITCVHLGANTQAVEHFLTAL 1858
L++ V+A Y LG+ ++ G +A E+ A
Sbjct: 113 KVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAA 149
Score = 30.5 bits (69), Expect = 4.0
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 1604 NETNAFAL---GQEKLRQGDLPSAILYLEAAAKQEPDNAEV 1641
++ N AL G + G L A L AA P+N ++
Sbjct: 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 158
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like
repeat, protein transport; 2.90A {Saccharomyces
cerevisiae} SCOP: a.118.8.1
Length = 292
Score = 38.5 bits (89), Expect = 0.019
Identities = 20/168 (11%), Positives = 47/168 (27%), Gaps = 20/168 (11%)
Query: 733 DVQNGLGVLFNLSDEYDKAVDCFRSALQV------RPDFTELLVYLFSSLDFQPPKQKIS 786
D+ ++ L E + A D F A + V + +
Sbjct: 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF------KSGG 91
Query: 787 DPDELRDYQHRKRKAFEDNIRKNRMVISNWIKYAQ-WEESQKQVDRARSIYERALDV--- 842
+ D + F + R + + + E +A YE A +
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQ-FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQ 150
Query: 843 ---DHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPRANQFWYKY 887
+ ++K +L+ + Q A +++ + + +
Sbjct: 151 DQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198
Score = 37.7 bits (87), Expect = 0.027
Identities = 26/234 (11%), Positives = 63/234 (26%), Gaps = 38/234 (16%)
Query: 1612 GQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPK 1671
++K + + K E + A++ + ++ A + K + K
Sbjct: 11 AEKKGVPSSGFMKLFSGSDSYKFE-EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKK 69
Query: 1672 NLEALMAISICFTNEACLHDALDTLKDKIRPGQESNPRPSAYKADALPSKLTRLANHTLT 1731
A + +A K +A+ L
Sbjct: 70 AGNEDEAGN-------TYVEAYKCFKSGGNS------------VNAV-DSLENAIQI--- 106
Query: 1732 FRSPLSSREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQ 1791
+ R ++ + + D D Y+ A + + Q
Sbjct: 107 ----FTHRGQFRRGANFKFELGEILENDLHDYA---------KAIDCYELAGEWYAQD-Q 152
Query: 1792 VRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYNLGITCVHLG 1845
++ + + A + EA + Y ++ S G ++++L + G
Sbjct: 153 SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat,
cysteine rich protein, loop-helix-TU repeat protein,
hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Length = 273
Score = 38.0 bits (89), Expect = 0.021
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 14/108 (12%)
Query: 1762 DPDVQNGLGVLFNLSDEYDKAVDCFR-SALQVRPDDSRLWNRLGASLANGN----RPEEA 1816
DP GLG ++ +A F + ++ LG G ++A
Sbjct: 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKA 61
Query: 1817 VEAYHTALQLSPGFVRARYNLGITCVH-LGA---NTQAVEHFLTALNQ 1860
Y A L + + LG G +A++++ A +
Sbjct: 62 ASFYAKACDL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL 107
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein;
2.85A {Arabidopsis thaliana}
Length = 338
Score = 38.1 bits (88), Expect = 0.022
Identities = 14/90 (15%), Positives = 26/90 (28%), Gaps = 17/90 (18%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
+LN A C YD+A+ L + +
Sbjct: 224 MALAVKNPCHLNIA-AC----------------LIKLKRYDEAIGHCNIVLTEEEKNPKA 266
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
R G + A + + A + + A + +P
Sbjct: 267 LFRRGKAKAELGQMDSARDDFRKAQKYAPD 296
Score = 35.0 bits (80), Expect = 0.21
Identities = 16/87 (18%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 1772 LFNLSDEYDKAVDCFRSALQVRPDDSRLWNRLGASLANGNRPEEAVEAYHTALQLSPGFV 1831
+F L +Y ++ + A L R +EA+ + L
Sbjct: 214 MFQLYGKYQDMALAVKNPC---------HLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP 264
Query: 1832 RARYNLGITCVHLGANTQAVEHFLTAL 1858
+A + G LG A + F A
Sbjct: 265 KALFRRGKAKAELGQMDSARDDFRKAQ 291
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural
genomics, joint center FO structural genomics, JCSG; HET:
MSE; 1.65A {Klebsiella pneumoniae subsp}
Length = 212
Score = 37.2 bits (87), Expect = 0.029
Identities = 18/100 (18%), Positives = 28/100 (28%), Gaps = 14/100 (14%)
Query: 1744 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFR-SALQVRPDDSRLWNR 1802
+ S Y A D Q L + S +Y KA + +A Q D
Sbjct: 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---GDGDALAL 55
Query: 1803 LGASLANGNRP---EEAVEAYHTALQLSPGFVRARYNLGI 1839
L + +A + A++ G L
Sbjct: 56 LAQLKIRNPQQADYPQARQLAEKAVEA--GSKSGEIVLAR 93
Score = 29.5 bits (67), Expect = 9.0
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 713 QVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSA 758
+ S Y A D Q L + S +Y KA + A
Sbjct: 4 EPGSQYQQQAEAG-----DRRAQYYLADTWVSSGDYQKAEYWAQKA 44
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle
checkpoint, TPR motif, all-alpha domain, MAD3-like
domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Length = 202
Score = 36.6 bits (84), Expect = 0.038
Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 23/132 (17%)
Query: 797 RKRKAFEDNIRKNRMV----ISNWIKYAQWEE-------SQKQVDRARSIYERALDV--- 842
+ + A+E + + + ++ Y W S+ + RS ER L
Sbjct: 10 QTKIAYEQRLLNDLEDMDDPLDLFLDYMIWISTSYIEVDSESGQEVLRSTMERCLIYIQD 69
Query: 843 ------DHRNITLWLKYTELEMRNRQVNHARNLWDRAVT--ILPRANQFWYKYTYMEEML 894
D R + +W+ Y L + N + + N + I + + F+ +++ + E
Sbjct: 70 METYRNDPRFLKIWIWYINLFLSN-NFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENA 128
Query: 895 ENVAGKLFVFHR 906
+ +
Sbjct: 129 QFFLEAKVLLEL 140
Score = 36.6 bits (84), Expect = 0.047
Identities = 10/54 (18%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHR-NITLWLKYTELEMRNRQVNHARN 868
+ ++++ E+ + A+ + E + + R L + E R R++N N
Sbjct: 118 YEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRSLSNYEDRLREMNIVEN 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase;
1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Length = 370
Score = 37.4 bits (87), Expect = 0.041
Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 17/92 (18%)
Query: 1738 SREIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDS 1797
++ LS LN +SD + AVD AL++ P ++
Sbjct: 265 GAKLQPVALSCVLNIG----------------ACKLKMSD-WQGAVDSCLEALEIDPSNT 307
Query: 1798 RLWNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
+ R ++A+ A +++P
Sbjct: 308 KALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339
Score = 30.8 bits (70), Expect = 5.0
Identities = 14/58 (24%), Positives = 24/58 (41%)
Query: 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKN 1672
KL+ D A+ A + +P N + ++ QA+A L K I P++
Sbjct: 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPED 340
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156,
PSI-biology, midwest center structural genomics, MCSG;
2.41A {Caenorhabditis elegans}
Length = 162
Score = 35.8 bits (83), Expect = 0.045
Identities = 14/90 (15%), Positives = 30/90 (33%), Gaps = 17/90 (18%)
Query: 1740 EIHQQVLSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDDSRL 1799
E+ ++ + LY N + QC + + +A + L+ + +
Sbjct: 57 ELDRKNIPLYANMS-QC----------------YLNIGDLHEAEETSSEVLKREETNEKA 99
Query: 1800 WNRLGASLANGNRPEEAVEAYHTALQLSPG 1829
R + + +EA E L+ P
Sbjct: 100 LFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129
Score = 30.8 bits (70), Expect = 2.7
Identities = 12/62 (19%), Positives = 18/62 (29%)
Query: 1615 KLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLE 1674
L GDL A K+E N + + + +A L L P
Sbjct: 73 YLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAAS 132
Query: 1675 AL 1676
+
Sbjct: 133 VV 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 35.8 bits (83), Expect = 0.17
Identities = 19/105 (18%), Positives = 44/105 (41%), Gaps = 2/105 (1%)
Query: 1778 EYDKAVDCFRSALQVRPDDSRLW-NRLGASLANGNRPEEAVEAYHTALQLSPGFVRARYN 1836
+Y+ A+ + A+++ P ++ + NR A L A+ A++L +++ Y
Sbjct: 21 DYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECY-GYALGDATRAIELDKKYIKGYYR 79
Query: 1837 LGITCVHLGANTQAVEHFLTALNQQAATHDGLTPHGLEPRAVKEM 1881
+ + LG A+ + T + + D + + VK+
Sbjct: 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 124
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 34.1 bits (78), Expect = 0.17
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNIT-LWLKYTELEMRNRQ 862
+I +A E+Q ++ A ++ +R + L +Y + R +
Sbjct: 104 YIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQQQYRLFQTRLTE 151
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.19
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 14/36 (38%)
Query: 224 KQS--KL---LKFMSNVATDGTPVLSDPEA--ATVQ 252
KQ+ KL LK A D P L A AT++
Sbjct: 19 KQALKKLQASLKLY---ADDSAPAL----AIKATME 47
Score = 34.2 bits (77), Expect = 0.19
Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 14/36 (38%)
Query: 1310 KQS--KL---LKFMSNVATDGTPVLSDPEA--ATVQ 1338
KQ+ KL LK A D P L A AT++
Sbjct: 19 KQALKKLQASLKLY---ADDSAPAL----AIKATME 47
Score = 33.0 bits (74), Expect = 0.45
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 7/34 (20%)
Query: 1107 QSFLLRHLEAAAKQ-EPDNAEVWLSLGISLAENE 1139
Q+ L+ L+A+ K D+A +L I A E
Sbjct: 20 QA--LKKLQASLKLYADDSAP---ALAIK-ATME 47
Score = 30.7 bits (68), Expect = 2.4
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 18/47 (38%)
Query: 594 RRSVNKQFYITANAENRYKVYDDEYLCRVLEATVFTPAKFIQEETLE 640
++++ K + K+Y D+ A PA I+ T+E
Sbjct: 19 KQALKK-------LQASLKLYADD------SA----PALAIK-ATME 47
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens}
SCOP: a.118.8.1
Length = 152
Score = 32.1 bits (73), Expect = 0.80
Identities = 11/63 (17%), Positives = 24/63 (38%)
Query: 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN 1638
S ++ + R + + E + + + F L R + A+ Y+ + EP N
Sbjct: 45 SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 104
Query: 1639 AEV 1641
+
Sbjct: 105 NQA 107
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A
{Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Length = 126
Score = 31.3 bits (71), Expect = 1.1
Identities = 10/63 (15%), Positives = 24/63 (38%)
Query: 1579 SDFSRNQRSSVSMHEYTFAEDNPMQNETNAFALGQEKLRQGDLPSAILYLEAAAKQEPDN 1638
+ ++ + R + + E + + + F L R + A+ Y+ + EP N
Sbjct: 48 TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQN 107
Query: 1639 AEV 1641
+
Sbjct: 108 NQA 110
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor
suppressor, TPR, apoptosis, cell division, cell cycle,
kinetochore, transferase; 1.80A {Homo sapiens} PDB:
3si5_A
Length = 164
Score = 31.8 bits (72), Expect = 1.2
Identities = 7/48 (14%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 816 WIKYAQWEESQKQVDRARSIYERALDVDHRNIT-LWLKYTELEMRNRQ 862
+I +A+ E+++ +A +I++ + + L ++ + + R +
Sbjct: 99 YISWAEEYEARENFRKADAIFQEGIQQKAEPLERLQSQHRQFQARVSR 146
Score = 30.6 bits (69), Expect = 2.8
Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 15/82 (18%)
Query: 797 RKRKAFEDNIRKNRM--VISNWIKYAQW-EESQKQVDRA---RSIYERALDV-------- 842
++++AFE IR + W +Y W E++ Q + ++ ERA++
Sbjct: 1 QQKRAFEYEIRFYTGNDPLDVWDRYISWTEQNYPQGGKESNMSTLLERAVEALQGEKRYY 60
Query: 843 -DHRNITLWLKYTELEMRNRQV 863
D R + LWLK L +
Sbjct: 61 SDPRFLNLWLKLGRLCNEPLDM 82
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus
stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A
2bfg_A*
Length = 503
Score = 32.6 bits (73), Expect = 1.4
Identities = 33/198 (16%), Positives = 66/198 (33%), Gaps = 12/198 (6%)
Query: 729 SIDPDVQNGLGVLFNLSDEYDKAVDCFRSALQVRPDFTELLVYLFSSL---DFQPPKQKI 785
S+DP +Q G + SDE+ F + +V DF Y + F+ Q++
Sbjct: 188 SVDPHLQVGGPAICGGSDEWITDFLHFCAERRVPVDFVSRHAYTSKAPHKKTFEYYYQEL 247
Query: 786 SDPDELRDYQHRKRKAFEDNIRKNRMVI------SNWIKYAQWEESQKQVDRARSIYERA 839
P+++ + R + + + S + + AR + E
Sbjct: 248 EPPEDMLEQFKTVRALIRQSPFPHLPLHITEYNTSYSPINPVHDTALNAAYIARILSEGG 307
Query: 840 LDVDHRNITLWLKYTELEMRNRQVNHARNLWDRAVTILPR--ANQFWYKYTYMEEMLENV 897
VD + + E + + H A+ +P+ + F + +E+L
Sbjct: 308 DYVDSFSYWTFSDVFEEMDVPKALFHG-GFGLVALHSIPKPTFHAFTFFNALGDELLYRD 366
Query: 898 AGKLFVFHRDSISQVTLW 915
+ +D LW
Sbjct: 367 GEMIVTRRKDGSIAAVLW 384
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 4.3
Identities = 8/65 (12%), Positives = 21/65 (32%), Gaps = 14/65 (21%)
Query: 781 PKQKISDPDELRDYQHRKRKAFE-----DNIRKNRMV------ISNWIKYAQWEES-QKQ 828
+ +P+ +R ++ +RK + + + + W + E +K
Sbjct: 77 ADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEW--NQRQSEQVEKN 134
Query: 829 VDRAR 833
R
Sbjct: 135 KINNR 139
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown
function, SEL1-like repeats; 1.68A {Escherichia coli}
Length = 490
Score = 30.7 bits (70), Expect = 5.1
Identities = 31/129 (24%), Positives = 46/129 (35%), Gaps = 25/129 (19%)
Query: 1746 LSLYLNAARQCPSQSIDPDVQNGLGVLFNLSDE-----YDKAVDCFR-SALQVRPDDSRL 1799
L Y +A Q + D Q L L++ E ++A+ + SA Q D+
Sbjct: 279 LEWYRKSAEQG-----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ---GDATA 330
Query: 1800 WNRLGASLANGNRP---EEAVEAYHTALQLSPGFVRARYNLGITCVHLGANT-----QAV 1851
LGA ++AVE + A G A++NLG + G QA
Sbjct: 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGN-ALLQGKGVKKDEQQAA 387
Query: 1852 EHFLTALNQ 1860
A Q
Sbjct: 388 IWMRKAAEQ 396
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt
pseudomonas, protein binding; 2.50A {Pseudomonas
fluorescens}
Length = 452
Score = 30.5 bits (69), Expect = 6.8
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 1611 LGQEKLRQGDLPSAILYLEAAAKQEPDNAEVWLSLGISLAEN--EQDPQAIAALSK 1664
L E L++GD +A + A+ +E + L + A +
Sbjct: 9 LANEALKRGDTVTAQQNYQQLAEL--GYSEAQVGLADIQVGTRDPAQIKQAEATYR 62
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae}
SCOP: a.118.8.1
Length = 144
Score = 29.1 bits (65), Expect = 8.1
Identities = 9/58 (15%), Positives = 15/58 (25%), Gaps = 1/58 (1%)
Query: 1620 DLPSAILYLEAAAKQEPDNA-EVWLSLGISLAENEQDPQAIAALSKCLSIEPKNLEAL 1676
D + L K+ E L I + + A + E N +
Sbjct: 57 DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.132 0.399
Gapped
Lambda K H
0.267 0.0778 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 29,150,706
Number of extensions: 1734959
Number of successful extensions: 5233
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4462
Number of HSP's successfully gapped: 828
Length of query: 1956
Length of database: 6,701,793
Length adjustment: 108
Effective length of query: 1848
Effective length of database: 3,686,325
Effective search space: 6812328600
Effective search space used: 6812328600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 65 (28.7 bits)