Query psy8684
Match_columns 226
No_of_seqs 105 out of 1159
Neff 8.3
Searched_HMMs 46136
Date Sat Aug 17 01:10:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8684.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8684hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0638 PRE1 20S proteasome, a 100.0 6E-48 1.3E-52 320.5 23.0 208 8-224 21-233 (236)
2 PTZ00488 Proteasome subunit be 100.0 1.4E-46 3E-51 314.0 25.8 206 11-224 33-239 (247)
3 PTZ00246 proteasome subunit al 100.0 4.9E-47 1.1E-51 318.8 22.7 213 8-225 23-243 (253)
4 cd03759 proteasome_beta_type_3 100.0 2.1E-46 4.6E-51 303.6 25.0 191 16-211 2-194 (195)
5 TIGR03690 20S_bact_beta protea 100.0 4.9E-46 1.1E-50 306.4 24.8 203 16-225 1-216 (219)
6 cd03750 proteasome_alpha_type_ 100.0 2.3E-46 5E-51 310.0 22.8 205 7-221 18-227 (227)
7 cd03761 proteasome_beta_type_5 100.0 6.4E-46 1.4E-50 299.1 24.7 184 18-207 1-185 (188)
8 cd03757 proteasome_beta_type_1 100.0 8.5E-46 1.8E-50 303.6 25.0 193 14-211 5-207 (212)
9 PRK03996 proteasome subunit al 100.0 4.6E-46 1E-50 310.8 22.7 208 7-223 27-239 (241)
10 cd03758 proteasome_beta_type_2 100.0 1.2E-45 2.6E-50 298.7 24.3 185 18-207 2-189 (193)
11 KOG0176|consensus 100.0 3.5E-46 7.6E-51 290.0 19.0 207 7-223 25-241 (241)
12 cd03762 proteasome_beta_type_6 100.0 6.1E-45 1.3E-49 293.4 25.2 185 18-207 1-185 (188)
13 cd03760 proteasome_beta_type_4 100.0 5E-45 1.1E-49 296.0 24.3 187 16-207 1-193 (197)
14 TIGR03634 arc_protsome_B prote 100.0 8.6E-45 1.9E-49 291.8 24.2 183 17-204 1-184 (185)
15 TIGR03633 arc_protsome_A prote 100.0 3.5E-45 7.7E-50 302.4 21.7 200 7-215 20-224 (224)
16 cd03763 proteasome_beta_type_7 100.0 1.5E-44 3.3E-49 291.4 24.8 184 18-207 1-184 (189)
17 cd03764 proteasome_beta_archea 100.0 1.2E-43 2.6E-48 285.8 25.0 182 18-204 1-183 (188)
18 cd03752 proteasome_alpha_type_ 100.0 5.7E-44 1.2E-48 293.1 21.2 189 7-200 20-213 (213)
19 cd01912 proteasome_beta protea 100.0 4.2E-43 9E-48 282.8 24.8 185 18-207 1-186 (189)
20 cd03765 proteasome_beta_bacter 100.0 6.5E-43 1.4E-47 289.2 24.5 191 18-215 1-214 (236)
21 cd03755 proteasome_alpha_type_ 100.0 2.5E-43 5.4E-48 288.1 20.5 185 7-200 18-207 (207)
22 cd03751 proteasome_alpha_type_ 100.0 2.5E-43 5.4E-48 288.9 20.3 187 7-200 21-212 (212)
23 TIGR03691 20S_bact_alpha prote 100.0 5.7E-43 1.2E-47 289.0 21.5 202 6-220 17-228 (228)
24 cd03756 proteasome_alpha_arche 100.0 7.4E-43 1.6E-47 286.1 21.3 187 7-201 19-210 (211)
25 cd03749 proteasome_alpha_type_ 100.0 8.1E-43 1.7E-47 285.8 21.4 186 7-201 18-211 (211)
26 cd03753 proteasome_alpha_type_ 100.0 1.4E-42 3.1E-47 284.8 20.4 186 7-200 18-213 (213)
27 cd01911 proteasome_alpha prote 100.0 1.6E-42 3.4E-47 283.8 20.0 187 7-200 18-209 (209)
28 cd03754 proteasome_alpha_type_ 100.0 4E-42 8.6E-47 282.4 20.8 187 7-200 19-215 (215)
29 KOG0178|consensus 100.0 2E-42 4.2E-47 271.5 16.4 211 8-223 23-240 (249)
30 PF00227 Proteasome: Proteasom 100.0 2.9E-41 6.2E-46 271.9 22.1 183 14-200 1-190 (190)
31 cd01906 proteasome_protease_Hs 100.0 4.5E-41 9.8E-46 269.0 22.8 179 18-200 1-182 (182)
32 KOG0174|consensus 100.0 1.3E-41 2.7E-46 263.8 17.3 207 11-222 13-219 (224)
33 KOG0183|consensus 100.0 6E-41 1.3E-45 263.7 15.1 207 7-224 21-234 (249)
34 KOG0179|consensus 100.0 3.2E-38 6.9E-43 247.6 21.0 203 3-212 17-231 (235)
35 KOG0175|consensus 100.0 7.7E-39 1.7E-43 257.9 16.5 201 14-222 68-269 (285)
36 KOG0181|consensus 100.0 3.4E-39 7.3E-44 250.5 13.3 205 8-223 24-233 (233)
37 KOG0173|consensus 100.0 6E-38 1.3E-42 252.2 17.9 193 7-204 27-219 (271)
38 KOG0184|consensus 100.0 1.9E-37 4.1E-42 245.2 14.7 204 7-218 25-233 (254)
39 KOG0182|consensus 100.0 2.2E-36 4.8E-41 237.6 19.5 212 7-226 26-245 (246)
40 KOG0177|consensus 100.0 1.4E-36 3.1E-41 235.0 17.6 186 18-208 2-190 (200)
41 KOG0180|consensus 100.0 4.2E-35 9.2E-40 223.6 17.1 194 14-212 5-200 (204)
42 KOG0863|consensus 100.0 7.1E-35 1.5E-39 231.7 17.2 203 8-221 24-234 (264)
43 PRK05456 ATP-dependent proteas 100.0 5.5E-34 1.2E-38 225.4 20.1 166 17-199 1-171 (172)
44 cd01913 protease_HslV Protease 100.0 2.6E-33 5.7E-38 220.1 19.8 165 18-199 1-170 (171)
45 TIGR03692 ATP_dep_HslV ATP-dep 100.0 9.6E-33 2.1E-37 216.9 19.6 165 18-199 1-170 (171)
46 KOG0185|consensus 100.0 2.3E-32 4.9E-37 218.0 15.7 204 11-220 35-244 (256)
47 cd01901 Ntn_hydrolase The Ntn 100.0 8E-29 1.7E-33 192.9 20.6 160 18-182 1-163 (164)
48 COG5405 HslV ATP-dependent pro 99.6 6.6E-15 1.4E-19 112.1 13.7 170 15-201 2-176 (178)
49 COG3484 Predicted proteasome-t 99.4 3.1E-12 6.7E-17 101.0 12.0 181 18-204 2-202 (255)
50 PF09894 DUF2121: Uncharacteri 97.4 0.033 7.1E-07 44.5 16.3 150 18-203 2-180 (194)
51 COG4079 Uncharacterized protei 96.5 0.11 2.4E-06 43.0 12.9 168 18-221 2-198 (293)
52 KOG3361|consensus 85.7 1.7 3.8E-05 32.7 4.5 43 134-176 72-114 (157)
53 PRK09732 hypothetical protein; 51.0 47 0.001 25.1 5.3 35 166-204 5-39 (134)
54 PF13778 DUF4174: Domain of un 50.1 36 0.00078 25.0 4.5 34 192-225 77-110 (118)
55 PF03928 DUF336: Domain of unk 41.3 41 0.00088 25.0 3.7 37 166-206 1-37 (132)
56 cd04513 Glycosylasparaginase G 39.5 1.4E+02 0.003 25.4 6.9 59 145-206 186-248 (263)
57 COG3193 GlcG Uncharacterized p 38.8 96 0.0021 23.7 5.2 37 166-206 6-42 (141)
58 PF07499 RuvA_C: RuvA, C-termi 38.3 26 0.00056 21.2 1.8 32 149-180 13-45 (47)
59 PF09695 YtfJ_HI0045: Bacteria 34.7 54 0.0012 25.6 3.4 27 197-223 128-157 (160)
60 cd04512 Ntn_Asparaginase_2_lik 34.7 1.7E+02 0.0037 24.6 6.7 57 144-206 174-234 (248)
61 PF13066 DUF3929: Protein of u 31.1 68 0.0015 20.2 2.8 23 12-34 40-62 (65)
62 PRK04081 hypothetical protein; 30.8 40 0.00086 27.3 2.1 29 195-225 72-100 (207)
63 PF11211 DUF2997: Protein of u 29.1 1.1E+02 0.0023 18.8 3.4 32 133-164 3-34 (48)
64 cd04702 ASRGL1_like ASRGL1_lik 28.2 2.5E+02 0.0053 23.9 6.6 57 144-206 177-237 (261)
65 COG5469 Predicted metal-bindin 27.8 16 0.00035 27.7 -0.5 74 50-127 11-96 (143)
66 COG0822 IscU NifU homolog invo 27.2 2.9E+02 0.0063 21.2 7.0 56 130-186 43-99 (150)
67 PRK11325 scaffold protein; Pro 27.0 2.6E+02 0.0057 20.6 6.2 54 130-183 41-95 (127)
68 cd05295 MDH_like Malate dehydr 26.4 5.2E+02 0.011 23.9 9.3 117 66-204 7-133 (452)
69 PLN02235 ATP citrate (pro-S)-l 26.3 4.2E+02 0.009 24.2 8.1 125 52-182 266-420 (423)
70 TIGR02261 benz_CoA_red_D benzo 23.9 1.3E+02 0.0027 25.6 4.1 51 121-179 104-157 (262)
71 PF14748 P5CR_dimer: Pyrroline 23.0 1.5E+02 0.0034 21.1 4.0 40 148-187 12-55 (107)
72 COG2240 PdxK Pyridoxal/pyridox 22.6 1.7E+02 0.0036 25.2 4.6 73 50-124 2-81 (281)
73 PF01592 NifU_N: NifU-like N t 21.0 3.4E+02 0.0074 19.8 6.0 63 124-186 30-96 (126)
74 PF08269 Cache_2: Cache domain 21.0 1.4E+02 0.003 20.4 3.3 45 155-204 18-66 (95)
75 COG4990 Uncharacterized protei 20.2 1.1E+02 0.0023 24.6 2.8 35 118-165 150-184 (195)
No 1
>COG0638 PRE1 20S proteasome, alpha and beta subunits [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-48 Score=320.54 Aligned_cols=208 Identities=28% Similarity=0.441 Sum_probs=197.2
Q ss_pred CCCCccccCC-ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 8 ISAGTEVTCG-TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 8 ~~~~~ai~~g-ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+. .+++++| +|+|||+++||||||+|+|.+++.++.+++.+||++|++||+|++||+.+|++.++++++.+++.|+
T Consensus 21 ~a-~~a~~~~gtT~vgik~~dgVVlaadkr~t~~~~~~~~~~~Ki~~I~d~i~~~~sG~~aDa~~lv~~~r~~a~~~~-- 97 (236)
T COG0638 21 YA-LEAVKRGGTTTVGIKGKDGVVLAADKRATSGLLIASSNVEKIFKIDDHIGMAIAGLAADAQVLVRYARAEAQLYR-- 97 (236)
T ss_pred HH-HHHHHcCCceEEEEEecCEEEEEEeccCCCCceecccccceEEEecCCEEEEeccCcHhHHHHHHHHHHHHHHHH--
Confidence 45 6777775 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE 163 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~ 163 (226)
+.++++++++.+++++++++|.++ +||++++|+||+|+ ++|+||.+||+|++.++++.|+|+|++.++++||+.
T Consensus 98 --~~~~~~i~v~~la~~ls~~l~~~~~~~rP~gv~~iiaG~d~-~~p~Ly~~Dp~G~~~~~~~~a~Gsgs~~a~~~Le~~ 174 (236)
T COG0638 98 --LRYGEPISVEALAKLLSNILQEYTQSGRPYGVSLLVAGVDD-GGPRLYSTDPSGSYNEYKATAIGSGSQFAYGFLEKE 174 (236)
T ss_pred --HHhCCCCCHHHHHHHHHHHHHHhccCcccceEEEEEEEEcC-CCCeEEEECCCCceeecCEEEEcCCcHHHHHHHHhh
Confidence 999999999999999999999998 49999999999999 899999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CCeEEEEeChhhHhhHhhccC
Q psy8684 164 WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG-KPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 164 ~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~-g~~~~~~l~~~ei~~~~~~~~ 224 (226)
|+++|+++||++++.+||..+.+||..+++++++++++++ | ++.+.++|+..++.++.
T Consensus 175 y~~~m~~eeai~la~~al~~a~~rd~~s~~~~~v~vi~~~~~---~~~~~~~~~~~~~~~~~ 233 (236)
T COG0638 175 YREDLSLEEAIELAVKALRAAIERDAASGGGIEVAVITKDEG---FRKLDGEEIKKLLDDLS 233 (236)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhccccCCCCeEEEEEEcCCC---eEEcCHHHHHHHHHHHh
Confidence 9999999999999999999999999988899999999995 5 46789999999887764
No 2
>PTZ00488 Proteasome subunit beta type-5; Provisional
Probab=100.00 E-value=1.4e-46 Score=313.99 Aligned_cols=206 Identities=24% Similarity=0.393 Sum_probs=194.9
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
+-.+.+|+|+|||+++||||||+|+|.+.+.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+ ++
T Consensus 33 ~~~~~~G~T~IgIk~kdgVvlAaD~r~~~g~li~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~lr~~~~~y~----~~ 108 (247)
T PTZ00488 33 AIEFAHGTTTLAFKYGGGIIIAVDSKATAGPYIASQSVKKVIEINPTLLGTMAGGAADCSFWERELAMQCRLYE----LR 108 (247)
T ss_pred ccccCCCceEEEEEeCCEEEEEEecCcccCCEEEcCCcCceEEcCCCEEEEeCcCHHHHHHHHHHHHHHHHHHH----HH
Confidence 34578999999999999999999999998899999999999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK 169 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s 169 (226)
+|++|+++.+|+++++++|++|. |+.+++|+||||. .||+||.+||+|++.+++++|+|+|+.+++++||+.|+++||
T Consensus 109 ~g~~isv~~la~~ls~~l~~~R~~~~~v~~iiaG~D~-~gp~Ly~vDp~Gs~~~~~~~a~G~gs~~~~~~Le~~~k~dms 187 (247)
T PTZ00488 109 NGELISVAAASKILANIVWNYKGMGLSMGTMICGWDK-KGPGLFYVDNDGTRLHGNMFSCGSGSTYAYGVLDAGFKWDLN 187 (247)
T ss_pred HCCCCCHHHHHHHHHHHHHhcCCCCeeEEEEEEEEeC-CCCEEEEEcCCcceeecCCEEEccCHHHHHHHHHhcCcCCCC
Confidence 99999999999999999998853 5667789999997 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
.+||++++++||..+.+||..++++++|++|+++| + +.++++||+++++.++
T Consensus 188 ~eEai~l~~kal~~~~~Rd~~sg~~~ei~iI~k~g-~--~~l~~~ei~~~l~~~~ 239 (247)
T PTZ00488 188 DEEAQDLGRRAIYHATFRDAYSGGAINLYHMQKDG-W--KKISADDCFDLHQKYA 239 (247)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCeEEEEEcCCc-c--EECCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 4 6799999999998765
No 3
>PTZ00246 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.9e-47 Score=318.78 Aligned_cols=213 Identities=18% Similarity=0.290 Sum_probs=199.2
Q ss_pred CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684 8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG 87 (226)
Q Consensus 8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 87 (226)
|+ .+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|+++++|..+|++.+.+.++.+++.|+
T Consensus 23 YA-~~av~~g~t~Igik~~dgVvlaad~r~s~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~--- 98 (253)
T PTZ00246 23 YA-LEAINNASLTVGILCKEGVILGADKPISSKLLDPGKINEKIYKIDSHIFCAVAGLTADANILINQCRLYAQRYR--- 98 (253)
T ss_pred HH-HHHHHhCCCEEEEEECCEEEEEEecCCCCcCccCCCCcccEEEecCCEEEEEEEcHHHHHHHHHHHHHHHHHHH---
Confidence 56 89999999999999999999999999999877777789999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684 88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK 162 (226)
Q Consensus 88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~ 162 (226)
+.++.++++..+++.++..+|.++ |||++++|+||||++.+|+||.+||+|++.+++++|+|+|+.+++++|++
T Consensus 99 -~~~~~~~~v~~l~~~l~~~~q~~~~~~~~rP~~v~~li~G~D~~~gp~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~ 177 (253)
T PTZ00246 99 -YTYGEPQPVEQLVVQICDLKQSYTQFGGLRPFGVSFLFAGYDENLGYQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQ 177 (253)
T ss_pred -HHHCCCCCHHHHHHHHHHHHHHhccccCcccCCEEEEEEEEeCCCCcEEEEECCCCCEecceEEEECCCcHHHHHHHHH
Confidence 899999999999999999888764 59999999999996578999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC---CeEEEEeChhhHhhHhhccCC
Q psy8684 163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK---PMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g---~~~~~~l~~~ei~~~~~~~~~ 225 (226)
.|+++|+++||++++.+||..+.++|..+++.++|++++++| +..++.|+++||+++|.+++.
T Consensus 178 ~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~~~~~~~~~~l~~~ei~~~l~~~~~ 243 (253)
T PTZ00246 178 EWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGETDGEPIQKMLSEKEIAELLKKVTQ 243 (253)
T ss_pred hccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCCcCCCCCeEECCHHHHHHHHHHHhh
Confidence 999999999999999999999999999899999999999874 233688999999999998763
No 4
>cd03759 proteasome_beta_type_3 proteasome beta type-3 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.1e-46 Score=303.60 Aligned_cols=191 Identities=19% Similarity=0.292 Sum_probs=180.6
Q ss_pred CCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q psy8684 16 CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPP 95 (226)
Q Consensus 16 ~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
+|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+ +++++++
T Consensus 2 ~G~t~igik~~dgVvlaad~~~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~----~~~~~~~ 77 (195)
T cd03759 2 NGGAVVAMAGKDCVAIASDLRLGVQQQTVSTDFQKVFRIGDRLYIGLAGLATDVQTLAQKLRFRVNLYR----LREEREI 77 (195)
T ss_pred CCceEEEEEcCCEEEEEEccccccCCEeEecCCCeEEEeCCCEEEEccchHHHHHHHHHHHHHHHHHHH----HHhCCCC
Confidence 699999999999999999999999877777789999999999999999999999999999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeee-eEEecCChHHHHHHHhhhhcCCCCHHHH
Q psy8684 96 LVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQEC 173 (226)
Q Consensus 96 ~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~~Le~~~~~~~s~~ea 173 (226)
+++.+|++++++++.+| +||++++|+||||++++|+||.+||.|++.++. ++|+|+|++.++++||+.|+++||.+||
T Consensus 78 ~~~~la~~l~~~ly~~r~~P~~v~~ii~G~D~~~~p~Ly~~D~~G~~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea 157 (195)
T cd03759 78 KPKTFSSLISSLLYEKRFGPYFVEPVVAGLDPDGKPFICTMDLIGCPSIPSDFVVSGTASEQLYGMCESLWRPDMEPDEL 157 (195)
T ss_pred CHHHHHHHHHHHHHHhcCCCceEEEEEEEEcCCCCEEEEEEcCCCcccccCCEEEEcccHHHHHHHHHhccCCCCCHHHH
Confidence 99999999999998764 699999999999976789999999999987766 9999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684 174 IDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF 211 (226)
Q Consensus 174 i~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l 211 (226)
++++++||+.+.+||..++++++|++|+++| +.++.|
T Consensus 158 ~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~~~~~ 194 (195)
T cd03759 158 FETISQALLSAVDRDALSGWGAVVYIITKDK-VTTRTL 194 (195)
T ss_pred HHHHHHHHHHHHhhCcccCCceEEEEEcCCc-EEEEec
Confidence 9999999999999999999999999999999 866544
No 5
>TIGR03690 20S_bact_beta proteasome, beta subunit, bacterial type. Members of this family are the beta subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In Streptomyces, maturation during proteasome assembly was shown to remove a 53-amino acid propeptide. Most of the length of the propeptide is not included in this model.
Probab=100.00 E-value=4.9e-46 Score=306.43 Aligned_cols=203 Identities=21% Similarity=0.313 Sum_probs=189.7
Q ss_pred CCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q psy8684 16 CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPP 95 (226)
Q Consensus 16 ~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+ +++++++
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~----~~~~~~i 76 (219)
T TIGR03690 1 HGTTIVALTYPGGVLMAGDRRATQGNMIASRDVEKVYPTDEYSAVGIAGTAGLAIELVRLFQVELEHYE----KIEGVPL 76 (219)
T ss_pred CCcEEEEEEECCEEEEEECCccccCcEEEcCCcceEEEcCCcEEEEecccHHHHHHHHHHHHHHHHHHH----HHHCCCC
Confidence 489999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CHHHHHHHHHHHHHhc----cCCceeEEEEEEEeCC-CCeEEEEECCCCc-eeeeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684 96 LVYRAANLFQKIFRSN----EGSFKAAIIIAGWDTV-KGGQVYALPASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMK 169 (226)
Q Consensus 96 ~~~~~a~~l~~~~~~~----~~p~~v~~liaG~d~~-~~p~ly~id~~G~-~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s 169 (226)
+++.+++.+++++|.+ .|||++++|+||||.. ++|+||++||+|+ +..++++|+|+|+.+++++||+.|+++||
T Consensus 77 ~~~~la~~ls~~~~~~~~~~~rp~~v~~iiaG~D~~~~~~~Ly~~Dp~G~~~~~~~~~a~G~g~~~a~~~Le~~~~~~ms 156 (219)
T TIGR03690 77 TLDGKANRLAAMVRGNLPAAMQGLAVVPLLAGYDLDAGAGRIFSYDVTGGRYEERGYHAVGSGSVFAKGALKKLYSPDLD 156 (219)
T ss_pred CHHHHHHHHHHHHHhhhhhccCCceEEEEEEEECCCCCCcEEEEEeCCCCeeecCCeEEEeccHHHHHHHHHhcCCCCcC
Confidence 9999999999999865 4699999999999964 6799999999995 77789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCc-------EEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 170 KQECIDFIKMGLSLAMARDYASGGL-------INIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 170 ~~eai~la~~~l~~~~~~d~~~~~~-------i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
.+||++++.+||..+.++|..+++. ++|++++++| ++.++++||++++..++|
T Consensus 157 ~eeai~l~~~al~~~~~~d~~s~~~~~~~~~~~ei~ii~~~g---~~~l~~~ei~~~~~~~~~ 216 (219)
T TIGR03690 157 EDDALRVAVEALYDAADDDSATGGPDLVRGIYPTVVVITADG---ARRVPESELEELARAIVE 216 (219)
T ss_pred HHHHHHHHHHHHHHHHhcccccCCcccccccccEEEEEccCc---eEEcCHHHHHHHHHHHHh
Confidence 9999999999999999999866664 3999999888 468999999999998876
No 6
>cd03750 proteasome_alpha_type_2 proteasome_alpha_type_2. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.3e-46 Score=310.04 Aligned_cols=205 Identities=17% Similarity=0.291 Sum_probs=191.5
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.++ .++.+++.+||++|++|++|+++|..+|++.+.++++.+++.|+
T Consensus 18 eyA-~~av~~G~t~igik~~dgVvlaad~~~~~-~l~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-- 93 (227)
T cd03750 18 EYA-LAAVSSGAPSVGIKAANGVVLATEKKVPS-PLIDESSVHKVEQITPHIGMVYSGMGPDFRVLVKKARKIAQQYY-- 93 (227)
T ss_pred HHH-HHHHHcCCCEEEEEeCCEEEEEEeecCCc-cccCCCCcceEEEEcCCEEEEEeEcHHhHHHHHHHHHHHHHHHH--
Confidence 466 89999999999999999999999999985 78888899999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
+++|++++++.+++.+++++|.+ .|||++++|++|||. .||+||.+||+|++.+++++|+|+|+.+++++||
T Consensus 94 --~~~~~~~~v~~la~~l~~~~~~~t~~~~~rP~~v~~li~G~D~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le 170 (227)
T cd03750 94 --LVYGEPIPVSQLVREIASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPYLYQVDPSGSYFTWKATAIGKNYSNAKTFLE 170 (227)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHhcCCCCCCChheEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEECCCCHHHHHHHH
Confidence 99999999999999999999866 369999999999997 6899999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~ 221 (226)
+.|+++||++||++++++||..+.++|. ++.++++.+++++++ ++.++++||++++.
T Consensus 171 ~~~~~~ms~eeai~l~~~~l~~~~~~~l-~~~~iev~iv~~~~~--~~~~~~~ei~~~~~ 227 (227)
T cd03750 171 KRYNEDLELEDAIHTAILTLKEGFEGQM-TEKNIEIGICGETKG--FRLLTPAEIKDYLA 227 (227)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEECCCC--EEECCHHHHHHHhC
Confidence 9999999999999999999999998875 789999999999632 46899999999873
No 7
>cd03761 proteasome_beta_type_5 proteasome beta type-5 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.4e-46 Score=299.14 Aligned_cols=184 Identities=26% Similarity=0.426 Sum_probs=178.6
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|+++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tT~igi~~kdgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~----~~~~~~i~~ 76 (188)
T cd03761 1 TTTLAFIFQGGVIVAVDSRATAGSYIASQTVKKVIEINPYLLGTMAGGAADCQYWERVLGRECRLYE----LRNKERISV 76 (188)
T ss_pred CcEEEEEECCEEEEEEcCCccCCcEEEcCCcceEEEccCcEEEEeCccHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence 6899999999999999999999889888999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
+.+|+++++++|.+|+ ||++++|+||||+ .||+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+++
T Consensus 77 ~~la~~ls~~l~~~~~~~~~v~~li~G~D~-~g~~L~~~dp~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eea~~l 155 (188)
T cd03761 77 AAASKLLSNMLYQYKGMGLSMGTMICGWDK-TGPGLYYVDSDGTRLKGDLFSVGSGSTYAYGVLDSGYRYDLSVEEAYDL 155 (188)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEEcCCceEEEcCeEEEcccHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 9999999999999975 8999999999997 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 177 IKMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
+.+||..+.+||..+++.+++++|+++| +.
T Consensus 156 ~~~~l~~~~~rd~~sg~~~~v~ii~~~g-~~ 185 (188)
T cd03761 156 ARRAIYHATHRDAYSGGNVNLYHVREDG-WR 185 (188)
T ss_pred HHHHHHHHHHhcccCCCCeEEEEEcCCc-eE
Confidence 9999999999999999999999999999 63
No 8
>cd03757 proteasome_beta_type_1 proteasome beta type-1 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.5e-46 Score=303.65 Aligned_cols=193 Identities=24% Similarity=0.326 Sum_probs=183.2
Q ss_pred ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE 93 (226)
Q Consensus 14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (226)
+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++++++++||..+|++.+.++++.+++.|+ +.+|+
T Consensus 5 ~~~G~Tvigik~~dgVvlaaD~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~r~~~~~~~----~~~g~ 80 (212)
T cd03757 5 TDNGGTVLAIAGNDFAVIAGDTRLSEGYSILSRDSPKIFKLTDKCVLGSSGFQADILALTKRLKARIKMYK----YSHNK 80 (212)
T ss_pred cCCCccEEEEEcCCEEEEEECCccccCCEeEeCCCCeEEEcCCCEEEEccchHHHHHHHHHHHHHHHHHHh----HHhCC
Confidence 46799999999999999999999999988888999999999999999999999999999999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc-------
Q psy8684 94 PPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR------- 165 (226)
Q Consensus 94 ~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~------- 165 (226)
+++++.++++++++++..| +||++++|+||||++++|+||.+||.|++.+++++|+|+|+.+++++||+.|+
T Consensus 81 ~i~~~~la~~ls~~ly~~R~~P~~~~~iiaG~D~~~~p~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~~~~ 160 (212)
T cd03757 81 EMSTEAIAQLLSTILYSRRFFPYYVFNILAGIDEEGKGVVYSYDPVGSYERETYSAGGSASSLIQPLLDNQVGRKNQNNV 160 (212)
T ss_pred CCCHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCEEEEEEcCccCeeecCEEEEeecHHHHHHHHHHHHHhhccCcC
Confidence 9999999999999998765 49999999999997678999999999999999999999999999999999985
Q ss_pred --CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684 166 --ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF 211 (226)
Q Consensus 166 --~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l 211 (226)
++||++||++++.+||+.+.+||..+++.++|++|+++| +..+.+
T Consensus 161 ~~~~ms~eea~~l~~~~l~~~~~rd~~sg~~i~i~iit~~g-~~~~~~ 207 (212)
T cd03757 161 ERTPLSLEEAVSLVKDAFTSAAERDIYTGDSLEIVIITKDG-IEEETF 207 (212)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCcccCCCEEEEEEcCCC-EEEEee
Confidence 899999999999999999999999999999999999999 766544
No 9
>PRK03996 proteasome subunit alpha; Provisional
Probab=100.00 E-value=4.6e-46 Score=310.84 Aligned_cols=208 Identities=20% Similarity=0.313 Sum_probs=195.3
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.++ .+...++.+||+.|++++++++||..+|++.++++++.+++.|+
T Consensus 27 eya-~~av~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-- 102 (241)
T PRK03996 27 EYA-REAVKRGTTAVGVKTKDGVVLAVDKRITS-PLIEPSSIEKIFKIDDHIGAASAGLVADARVLIDRARVEAQINR-- 102 (241)
T ss_pred HHH-HHHHHhCCCEEEEEeCCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEcccHHHHHHHHHHHHHHHHHHH--
Confidence 567 89999999999999999999999999985 67777899999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++++++.+++.+++.+|.++ |||++++|+||||+ .||+||.+||+|++.+++++|+|+|+..++++|+
T Consensus 103 --~~~~~~i~~~~la~~ls~~~~~~~~~~~~rP~~~~~ilaG~d~-~gp~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le 179 (241)
T PRK03996 103 --LTYGEPIGVETLTKKICDHKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYLEYKATAIGAGRDTVMEFLE 179 (241)
T ss_pred --HHhCCCCCHHHHHHHHHHHHHHhcCCCCccchheEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCcHHHHHHHH
Confidence 999999999999999999998763 59999999999997 6899999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~ 223 (226)
+.|+++|+++||++++++||..+.++ ..+++.++|++++++| ..++.++++||++++..+
T Consensus 180 ~~~~~~~s~eeai~l~~~al~~~~~~-~~~~~~i~i~ii~~~~-~~~~~~~~~ei~~~~~~~ 239 (241)
T PRK03996 180 KNYKEDLSLEEAIELALKALAKANEG-KLDPENVEIAYIDVET-KKFRKLSVEEIEKYLEKL 239 (241)
T ss_pred HhcccCCCHHHHHHHHHHHHHHHhcc-CCCCCcEEEEEEECCC-CcEEECCHHHHHHHHHHh
Confidence 99999999999999999999999876 4578999999999998 568899999999998765
No 10
>cd03758 proteasome_beta_type_2 proteasome beta type-2 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-45 Score=298.71 Aligned_cols=185 Identities=21% Similarity=0.316 Sum_probs=177.8
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+|||+++||||||+|+|.+++.++.+++.+|||+|++++++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 2 ~t~igi~~~dgVvlaad~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~aD~~~l~~~~~~~~~~~~----~~~~~~i~~ 77 (193)
T cd03758 2 ETLIGIKGKDFVILAADTSAARSILVLKDDEDKIYKLSDHKLMACSGEAGDRLQFAEYIQKNIQLYK----MRNGYELSP 77 (193)
T ss_pred ceEEEEEeCCEEEEEEcCccccCcEEEecCcccEEEeCCCeEEEEccchHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence 7899999999999999999999888999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684 98 YRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECI 174 (226)
Q Consensus 98 ~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai 174 (226)
+.+++++++++|.+ ++||++++|+||||++.+|+||++||+|++.+++++|+|+|+.+++++||+.|+++||.+||+
T Consensus 78 ~~la~~l~~~~~~~~~~~rP~~~~~li~G~d~~~~p~Ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai 157 (193)
T cd03758 78 KAAANFTRRELAESLRSRTPYQVNLLLAGYDKVEGPSLYYIDYLGTLVKVPYAAHGYGAYFCLSILDRYYKPDMTVEEAL 157 (193)
T ss_pred HHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcCCCCcEEEEECCCcceEECCeeEEeecHHHHHHHHHhccCCCCCHHHHH
Confidence 99999999999754 259999999999997678999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 175 DFIKMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 175 ~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
+++.+||+.+.+||..++++++|.+|+++| +.
T Consensus 158 ~l~~~a~~~~~~rd~~~~~~i~i~ii~~~g-~~ 189 (193)
T cd03758 158 ELMKKCIKELKKRFIINLPNFTVKVVDKDG-IR 189 (193)
T ss_pred HHHHHHHHHHHHhccccCCceEEEEEcCCC-eE
Confidence 999999999999999999999999999999 64
No 11
>KOG0176|consensus
Probab=100.00 E-value=3.5e-46 Score=290.00 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=193.9
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|++.|+|.|||+.++|||||+++|+++ .+..+.+..||++|++||+|++||+.+|++.++++.|.++++|.
T Consensus 25 EYa-ieAikLGsTaIGv~TkEgVvL~vEKritS-pLm~p~sveKi~eid~HIgca~SGl~aDarTlve~arv~~qnh~-- 100 (241)
T KOG0176|consen 25 EYA-IEAIKLGSTAIGVKTKEGVVLAVEKRITS-PLMEPSSVEKIVEIDDHIGCAMSGLIADARTLVERARVETQNHW-- 100 (241)
T ss_pred hhH-HHHHhcCCceeeeeccceEEEEEeccccC-cccCchhhhhheehhhceeeeccccccchHHHHHHHHHHhhhce--
Confidence 456 88999999999999999999999999999 68889999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHH
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSN----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYI 156 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~ 156 (226)
+.|+++|+++.+.+.++++--++ +|||||++|+||+|. .||+||+.||+|++..+++-|+|||++-+
T Consensus 101 --f~Y~e~i~VEs~tq~v~~LaLrFGe~~~~~~~msRPFGValliAG~D~-~gpqL~h~dPSGtf~~~~AKAIGSgsEga 177 (241)
T KOG0176|consen 101 --FTYGEPISVESLTQAVSDLALRFGEGDDEEAIMSRPFGVALLIAGHDE-TGPQLYHLDPSGTFIRYKAKAIGSGSEGA 177 (241)
T ss_pred --eecCCcccHHHHHHHHHHHHhHhCCCcchhhhhcCCcceEEEEeeccC-CCceEEEeCCCCceEEecceeccccchHH
Confidence 99999999999999999876654 479999999999997 79999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684 157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~ 223 (226)
.+.|++.|+++++++||+.+++..|+..++... ...++++.++++.|. ++.+++||++.++.++
T Consensus 178 ~~~L~~e~~~~ltL~ea~~~~L~iLkqVMeeKl-~~~Nvev~~vt~e~~--f~~~t~EE~~~~i~~~ 241 (241)
T KOG0176|consen 178 ESSLQEEYHKDLTLKEAEKIVLKILKQVMEEKL-NSNNVEVAVVTPEGE--FHIYTPEEVEQVIKRL 241 (241)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHHhc-CccceEEEEEcccCc--eEecCHHHHHHHHhcC
Confidence 999999999999999999999999999998665 558999999999862 6789999999998764
No 12
>cd03762 proteasome_beta_type_6 proteasome beta type-6 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.1e-45 Score=293.41 Aligned_cols=185 Identities=52% Similarity=0.928 Sum_probs=179.5
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+ .++++++++
T Consensus 1 ~t~igi~~~dgVvla~D~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~----~~~~~~~~~ 76 (188)
T cd03762 1 TTIIAVEYDGGVVLGADSRTSTGSYVANRVTDKLTQLHDRIYCCRSGSAADTQAIADYVRYYLDMHS----IELGEPPLV 76 (188)
T ss_pred CeEEEEEECCeEEEEEcccccCCceEEcCCcccEEEccCCEEEEecccHHHHHHHHHHHHHHHHHhH----HhhCCCCCH
Confidence 6899999999999999999999988888999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI 177 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la 177 (226)
+.+++++++++|.+|+||++++|+||||++.+|+||.+||.|++.+++++++|+|+.+++++|++.|+++||++||++++
T Consensus 77 ~~~a~~l~~~~~~~~~~~~~~~ii~G~d~~~gp~ly~~d~~G~~~~~~~~~~G~g~~~~~~~Le~~~~~~~s~~ea~~l~ 156 (188)
T cd03762 77 KTAASLFKNLCYNYKEMLSAGIIVAGWDEQNGGQVYSIPLGGMLIRQPFAIGGSGSTYIYGYVDANYKPGMTLEECIKFV 156 (188)
T ss_pred HHHHHHHHHHHHhccccceeeEEEEEEcCCCCcEEEEECCCCCEEecCEEEEcccHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 99999999999999999999999999997678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 178 KMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
++||+.+.+||..+++.++|++|+++| +.
T Consensus 157 ~~al~~~~~rd~~~~~~~~i~~i~~~g-~~ 185 (188)
T cd03762 157 KNALSLAMSRDGSSGGVIRLVIITKDG-VE 185 (188)
T ss_pred HHHHHHHHHhccccCCCEEEEEECCCC-EE
Confidence 999999999999999999999999999 64
No 13
>cd03760 proteasome_beta_type_4 proteasome beta type-4 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis.Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5e-45 Score=295.99 Aligned_cols=187 Identities=19% Similarity=0.275 Sum_probs=177.4
Q ss_pred CCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHH-hhhhccccccCCC
Q psy8684 16 CGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHID-LDVAYGYREMNEP 94 (226)
Q Consensus 16 ~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~-~~~~~~~~~~~~~ 94 (226)
.|+|+|||+++||||||+|+|.+++.++.+++.+|||+|++|++++++|..+|++.+++++|.+++ .++ ++++.+
T Consensus 1 ~G~T~igi~~kdgVvlaad~r~~~~~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~~----~~~~~~ 76 (197)
T cd03760 1 TGTSVIAIKYKDGVIIAADTLGSYGSLARFKNVERIFKVGDNTLLGASGDYADFQYLKRLLDQLVIDDEC----LDDGHS 76 (197)
T ss_pred CCceEEEEEeCCcEEEEEcCcccccceeecCCCCcEEEecCcEEEEeCcchHHHHHHHHHHHHHHHHHHH----HhCCCC
Confidence 489999999999999999999998899999999999999999999999999999999999999986 566 778999
Q ss_pred CCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC--CCC
Q psy8684 95 PLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA--NMK 169 (226)
Q Consensus 95 ~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~--~~s 169 (226)
++++.++++++++++.++ +||++++|+||||++++|+||++||.|++.+++++|+|+|+.+++++||+.|++ +||
T Consensus 77 ~~~~~la~~i~~~~y~~~~~~rP~~v~~iiaG~D~~~gp~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~~ms 156 (197)
T cd03760 77 LSPKEIHSYLTRVLYNRRSKMNPLWNTLVVGGVDNEGEPFLGYVDLLGTAYEDPHVATGFGAYLALPLLREAWEKKPDLT 156 (197)
T ss_pred CCHHHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCEEEEEEcCCccEEECCEeEEccHHHHHHHHHHhhcCCCCCCC
Confidence 999999999999988664 699999999999976789999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
.+||++++.+||+.+.+||..+++.++|++|+++| +.
T Consensus 157 ~eea~~l~~~~l~~~~~rd~~~~~~~~i~ii~~~g-~~ 193 (197)
T cd03760 157 EEEARALIEECMKVLYYRDARSINKYQIAVVTKEG-VE 193 (197)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCceEEEEECCCC-EE
Confidence 99999999999999999999999999999999999 64
No 14
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=8.6e-45 Score=291.82 Aligned_cols=183 Identities=28% Similarity=0.481 Sum_probs=177.8
Q ss_pred CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
|+|+|||+++||||||+|+|.+.+.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+ .+++++++
T Consensus 1 G~t~igi~~~dgVvla~d~~~~~~~~i~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~ 76 (185)
T TIGR03634 1 GTTTVGIKCKDGVVLAADKRASMGNFVASKNAKKVFQIDDYIAMTIAGSVGDAQSLVRILKAEAKLYE----LRRGRPMS 76 (185)
T ss_pred CCcEEEEEeCCEEEEEEcCcccCCCEEecCCcccEEEcCCCEEEEcCchHHHHHHHHHHHHHHHHHHH----HHHCCCCC
Confidence 78999999999999999999998899999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHH
Q psy8684 97 VYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECID 175 (226)
Q Consensus 97 ~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~ 175 (226)
++.+++++++++|.++ +||++++|+||||. .||+||.+||+|++.+++++|+|+|+.+++++|++.|+++||++||++
T Consensus 77 ~~~~a~~l~~~~~~~~~rP~~v~~ivaG~d~-~g~~Ly~~d~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~~ea~~ 155 (185)
T TIGR03634 77 VKALATLLSNILNSNRFFPFIVQLLVGGVDE-EGPHLYSLDPAGGIIEDDYTATGSGSPVAYGVLEDEYREDMSVEEAKK 155 (185)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEEEeC-CCCEEEEECCCCCeEECCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHH
Confidence 9999999999999875 59999999999997 689999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 176 FIKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 176 la~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
++.+||+.+.++|..++++++|++|+++|
T Consensus 156 l~~~~l~~~~~r~~~~~~~~~v~ii~~~g 184 (185)
T TIGR03634 156 LAVRAIKSAIERDVASGNGIDVAVITKDG 184 (185)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEEEcCCC
Confidence 99999999999999999999999999988
No 15
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=100.00 E-value=3.5e-45 Score=302.43 Aligned_cols=200 Identities=24% Similarity=0.329 Sum_probs=187.6
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|+++++|++||..+|++.+.+.++.+++.|+
T Consensus 20 eya-~~av~~G~tvigi~~~dgvvlaad~r~~~-~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~-- 95 (224)
T TIGR03633 20 EYA-REAVKRGTTAVGIKTKDGVVLAVDKRITS-KLVEPSSIEKIFKIDDHIGAATSGLVADARVLIDRARIEAQINR-- 95 (224)
T ss_pred HHH-HHHHHcCCCEEEEEECCEEEEEEeccCCc-cccCCCccceEEEECCCEEEEEeecHHhHHHHHHHHHHHHHHHH--
Confidence 356 88999999999999999999999999985 67777899999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++++++.+++++++++|.+ +|||++++|+||+|+ ++|+||.+||.|++.+++++|+|+|+.+++++|+
T Consensus 96 --~~~~~~~~~~~la~~ls~~l~~~~~~~~~rP~~v~~ll~G~d~-~~~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~ 172 (224)
T TIGR03633 96 --LTYGEPIDVETLAKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGALLEYKATAIGAGRQAVTEFLE 172 (224)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHhcCCCCccccceEEEEEEEeC-CcCEEEEECCCCCeecceEEEECCCCHHHHHHHH
Confidence 99999999999999999998866 359999999999996 7899999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhh
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEE 215 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~e 215 (226)
+.|+++|+.+||++++++||..+.+ |..+++.++|++|+++| ..++.++++|
T Consensus 173 ~~~~~~~~~eeai~l~~~al~~~~~-d~~~~~~i~i~ii~~~g-~~~~~~~~~~ 224 (224)
T TIGR03633 173 KEYREDLSLDEAIELALKALYSAVE-DKLTPENVEVAYITVED-KKFRKLSVEE 224 (224)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHhc-ccCCCCcEEEEEEEcCC-CcEEECCCCC
Confidence 9999999999999999999999988 88889999999999998 5577888875
No 16
>cd03763 proteasome_beta_type_7 proteasome beta type-7 subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.5e-44 Score=291.37 Aligned_cols=184 Identities=28% Similarity=0.529 Sum_probs=178.7
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+|||+|+||||||+|+|.+++.++..++.+|||+|+++++++++|..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tt~igi~~~dgvvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~ 76 (189)
T cd03763 1 TTIVGVVFKDGVVLGADTRATEGPIVADKNCEKIHYIAPNIYCCGAGTAADTEAVTNMISSNLELHR----LNTGRKPRV 76 (189)
T ss_pred CeEEEEEECCeEEEEEcCCcccCceEEcCCccceEEecCCEEEEcCccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence 6899999999999999999999988988999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI 177 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la 177 (226)
+.+++++++.+|.++.||++++|+||||+ .||+||.+||.|++.+++++|+|+|+.+++++|++.|+++||++||++++
T Consensus 77 ~~~a~~l~~~l~~~~~p~~v~~ivaG~d~-~g~~ly~~d~~G~~~~~~~~a~G~~~~~~~~~L~~~~~~~ls~~ea~~l~ 155 (189)
T cd03763 77 VTALTMLKQHLFRYQGHIGAALVLGGVDY-TGPHLYSIYPHGSTDKLPFVTMGSGSLAAMSVLEDRYKPDMTEEEAKKLV 155 (189)
T ss_pred HHHHHHHHHHHHHcCCccceeEEEEeEcC-CCCEEEEECCCCCEEecCEEEEcCCHHHHHHHHHhhcCCCCCHHHHHHHH
Confidence 99999999999999899999999999997 67999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 178 KMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
.+||+.+.+||..++++++|++|+++| +.
T Consensus 156 ~~~l~~~~~rd~~~~~~~~v~ii~~~g-~~ 184 (189)
T cd03763 156 CEAIEAGIFNDLGSGSNVDLCVITKDG-VE 184 (189)
T ss_pred HHHHHHHHHhcCcCCCceEEEEEcCCc-EE
Confidence 999999999999999999999999999 64
No 17
>cd03764 proteasome_beta_archeal Archeal proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme for non-lysosomal protein degradation in both the cytosol and the nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are both members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.2e-43 Score=285.84 Aligned_cols=182 Identities=25% Similarity=0.458 Sum_probs=177.1
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+|||+++||||||+|+|.++|.++.+++.+||++|+++++++++|..+|++.+.++++.+++.|+ +.+++++++
T Consensus 1 tt~iai~~~dgvvia~d~r~~~g~~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~ 76 (188)
T cd03764 1 TTTVGIVCKDGVVLAADKRASMGNFIASKNVKKIFQIDDKIAMTIAGSVGDAQSLVRILKAEARLYE----LRRGRPMSI 76 (188)
T ss_pred CcEEEEEeCCEEEEEEccccccCCEEecCCcccEEEccCCEEEEcCccHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
+.+++++++++|.++ +||++++|+||||+ ++|+||.+||+|++.+++++|+|+|+++++++|++.|+++|+++||+++
T Consensus 77 ~~l~~~i~~~~~~~~~~P~~~~~lvaG~d~-~~~~ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~~ea~~l 155 (188)
T cd03764 77 KALATLLSNILNSSKYFPYIVQLLIGGVDE-EGPHLYSLDPLGSIIEDKYTATGSGSPYAYGVLEDEYKEDMTVEEAKKL 155 (188)
T ss_pred HHHHHHHHHHHHhcCCCCcEEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHhcCCCCCCHHHHHHH
Confidence 999999999999875 59999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 177 IKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
+++||+.+.+||..++++++|++++++|
T Consensus 156 ~~~~l~~~~~rd~~~~~~i~i~iv~~~g 183 (188)
T cd03764 156 AIRAIKSAIERDSASGDGIDVVVITKDG 183 (188)
T ss_pred HHHHHHHHHhhcCCCCCcEEEEEECCCC
Confidence 9999999999999999999999999999
No 18
>cd03752 proteasome_alpha_type_4 proteasome_alpha_type_4. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=5.7e-44 Score=293.10 Aligned_cols=189 Identities=18% Similarity=0.275 Sum_probs=178.8
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|+++|+|++||..+|++.+.++++.+++.|+
T Consensus 20 eya-~~a~~~G~t~igi~~~dgVvla~d~r~~~~~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-- 96 (213)
T cd03752 20 EYA-MEAISHAGTCLGILAKDGIVLAAEKKVTSKLLDQSFSSEKIYKIDDHIACAVAGITSDANILINYARLIAQRYL-- 96 (213)
T ss_pred HhH-HHHHhcCCCEEEEEeCCEEEEEEEeccCCcccCCCcCcceEEEecCCEEEEEecChHhHHHHHHHHHHHHHHHH--
Confidence 466 89999999999999999999999999999777667799999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++|+++.+++.++..+|.++ |||++++|++|||.+.||+||.+||+|++.+++++|+|+|+.+++++||
T Consensus 97 --~~~~~~i~v~~la~~ls~~~~~~t~~~~~RP~~v~~li~G~D~~~g~~ly~~d~~G~~~~~~~~a~G~gs~~~~~~Le 174 (213)
T cd03752 97 --YSYQEPIPVEQLVQRLCDIKQGYTQYGGLRPFGVSFLYAGWDKHYGFQLYQSDPSGNYSGWKATAIGNNNQAAQSLLK 174 (213)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHHhcCCCcccceeEEEEEEEeCCCCCEEEEECCCCCeeeeeEEEECCCcHHHHHHHH
Confidence 999999999999999999887653 6999999999999757899999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+.|+++||++||++++.+||..+.+||..++.+++|.++
T Consensus 175 ~~y~~~ms~eea~~l~~~al~~~~~r~~~~~~~~ei~~~ 213 (213)
T cd03752 175 QDYKDDMTLEEALALAVKVLSKTMDSTKLTSEKLEFATL 213 (213)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEC
Confidence 999999999999999999999999999888899999874
No 19
>cd01912 proteasome_beta proteasome beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4.2e-43 Score=282.76 Aligned_cols=185 Identities=32% Similarity=0.520 Sum_probs=178.9
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.+++..+..++.+|||+|++++++++||..+|++.+.++++.+++.|+ +.+++++++
T Consensus 1 tt~i~i~~~dgVvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~ 76 (189)
T cd01912 1 TTIVGIKGKDGVVLAADTRASAGSLVASRNFDKIFKISDNILLGTAGSAADTQALTRLLKRNLRLYE----LRNGRELSV 76 (189)
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEEcCCcCcEEEccCCEEEEccccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence 6899999999999999999999888778999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
+.+++++++++|++++ ||++++|+||||++++|+||.+||.|++.+++++|+|+++++++++|++.|+++||++||+++
T Consensus 77 ~~l~~~l~~~~~~~~~~P~~~~~iv~G~d~~~~~~l~~id~~G~~~~~~~~a~G~~~~~~~~~Le~~~~~~~s~~ea~~~ 156 (189)
T cd01912 77 KAAANLLSNILYSYRGFPYYVSLIVGGVDKGGGPFLYYVDPLGSLIEAPFVATGSGSKYAYGILDRGYKPDMTLEEAVEL 156 (189)
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEEEEEEcCCCCeEEEEECCCCCeEecCEEEEcccHHHHHHHHHhccCCCCCHHHHHHH
Confidence 9999999999999986 999999999999767899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 177 IKMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
+.+||..+.++|..++++++|++|+++| +.
T Consensus 157 ~~~~l~~~~~~d~~~~~~~~v~vi~~~g-~~ 186 (189)
T cd01912 157 VKKAIDSAIERDLSSGGGVDVAVITKDG-VE 186 (189)
T ss_pred HHHHHHHHHHhcCccCCcEEEEEECCCC-EE
Confidence 9999999999999999999999999999 63
No 20
>cd03765 proteasome_beta_bacterial Bacterial proteasome, beta subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=6.5e-43 Score=289.24 Aligned_cols=191 Identities=16% Similarity=0.220 Sum_probs=172.3
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeec----CeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKIS----DNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE 93 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~----~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (226)
|-+|||+++||||||+|+|.+.+ ++..++.+||++|+ +||+|+.||..+|++.+++++|.+++.|+ +++|+
T Consensus 1 ~~~vGIk~kdGVVLaadkr~~~~-l~~~~~~~KI~~I~~~~d~~I~~~~sG~~aD~~~l~~~~r~~~~~~~----~~~g~ 75 (236)
T cd03765 1 TYCLGIKLDAGLVFASDSRTNAG-VDNISTYRKMFVFSVPGERVIVLLTAGNLATTQAVISLLQRDLEDPE----ETNLL 75 (236)
T ss_pred CeEEEEEeCCeEEEEEccCccCC-CccccccceEEEecCCCCCEEEEEcCCcHHHHHHHHHHHHHHHHhhH----HhhCC
Confidence 46899999999999999998876 44445799999998 89999999999999999999999999999 99999
Q ss_pred -CCCHHHHHHHHHHHHHhc-----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeee----eeEEecCChHHHH
Q psy8684 94 -PPLVYRAANLFQKIFRSN-----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ----NCAVGGSGSSYIL 157 (226)
Q Consensus 94 -~~~~~~~a~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~----~~~a~Gsg~~~~~ 157 (226)
+++++.+|+.+++++++. .+||++++|+||||++.||+||.+||+|++.++ +|+|+|+ +.+++
T Consensus 76 ~~~~v~~la~~i~~~l~~~~~q~~~~~~~~~rp~gvslIigG~D~~~Gp~LY~idpsG~~~e~~a~~~~~AiG~-~~~a~ 154 (236)
T cd03765 76 NAPTMFDAARYVGETLREVQEQDREALKKAGIDFSASFILGGQIKGEEPRLFLIYPQGNFIEATPDTPFLQIGE-TKYGK 154 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhcccccccCCcceEEEEEEEeEECCCCCEEEEECCCCCEEeecCCCceeeeCC-chhhH
Confidence 799999999999986651 379999999999996578999999999999988 6789995 69999
Q ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEE---EEeChhh
Q psy8684 158 GYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEK---LVFTQEE 215 (226)
Q Consensus 158 ~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~---~~l~~~e 215 (226)
++||+.|+++||++||++++++||..+.++|..++++|+|++|+++| +.. +.+..+|
T Consensus 155 ~~Lek~yk~~ms~eeai~la~~al~~a~~rd~~sg~~iev~vI~k~G-~~~~~~~~~~~~~ 214 (236)
T cd03765 155 PILDRVITPDTSLEDAAKCALVSMDSTMRSNLSVGPPLDLLVYERDS-LQVGHYRRIEEDD 214 (236)
T ss_pred HHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEECCC-eeeeeeEEecCCC
Confidence 99999999999999999999999999999999999999999999998 544 3355444
No 21
>cd03755 proteasome_alpha_type_7 proteasome_alpha_type_7. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-43 Score=288.12 Aligned_cols=185 Identities=16% Similarity=0.281 Sum_probs=173.9
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.+. .++.++..+||++|++|+++++||+++|++.+.++++.+++.|+
T Consensus 18 eya-~~av~~G~t~Igik~~dgVvlaad~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-- 93 (207)
T cd03755 18 EYA-QEAVRKGTTAVGVRGKDCVVLGVEKKSVA-KLQDPRTVRKICMLDDHVCLAFAGLTADARVLINRARLECQSHR-- 93 (207)
T ss_pred HHH-HHHHHcCCCEEEEEeCCEEEEEEecCCCC-cccCCCccCcEEEECCCEEEEEecchhhHHHHHHHHHHHHHHHH--
Confidence 466 89999999999999999999999999776 56777789999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++++++.+++++++++|.++ |||++++|++|||++++|+||.+||+|++.+++++|+|+|+.+++++||
T Consensus 94 --~~~~~~i~~~~la~~ls~~~~~y~~~~~~rP~~vs~ii~G~D~~~~p~Ly~iD~~G~~~~~~~~a~G~gs~~~~~~Le 171 (207)
T cd03755 94 --LTVEDPVTVEYITRYIAGLQQRYTQSGGVRPFGISTLIVGFDPDGTPRLYQTDPSGTYSAWKANAIGRNSKTVREFLE 171 (207)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHHhcccCcccceeEEEEEEEeCCCCeEEEEECCCcCEEcceEEEECCCCHHHHHHHH
Confidence 999999999999999999998763 5999999999999767999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+.|+++|+.+||++++++||..+.+ .++.++||+++
T Consensus 172 ~~~~~~ms~eeai~l~~~~l~~~~~---~~~~~~e~~~~ 207 (207)
T cd03755 172 KNYKEEMTRDDTIKLAIKALLEVVQ---SGSKNIELAVM 207 (207)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHhC---CCCCeEEEEEC
Confidence 9999999999999999999999987 57789999875
No 22
>cd03751 proteasome_alpha_type_3 proteasome_alpha_type_3. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=2.5e-43 Score=288.88 Aligned_cols=187 Identities=14% Similarity=0.152 Sum_probs=174.5
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.++ .+...++.+||++|++|++++++|.++|++.+.++++.+++.|+
T Consensus 21 eya-~~a~~~G~tvIgik~kdgVvla~d~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~y~-- 96 (212)
T cd03751 21 EYA-NKAVENSGTAIGIRCKDGVVLAVEKLVTS-KLYEPGSNKRIFNVDRHIGIAVAGLLADGRHLVSRAREEAENYR-- 96 (212)
T ss_pred HHH-HHHHhcCCCEEEEEeCCEEEEEEEccccc-cccCcchhcceeEecCcEEEEEEEChHhHHHHHHHHHHHHHHHH--
Confidence 356 89999999999999999999999999987 66666789999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++++++.+++.+++++|.+ .|||++++|++|||+ +||+||.+||+|++.+++++|+|+|+.+++++||
T Consensus 97 --~~~~~~~~v~~la~~ls~~~~~~t~~~~~rP~~vs~li~G~D~-~gp~Ly~~D~~Gs~~~~~~~a~G~g~~~a~~~Le 173 (212)
T cd03751 97 --DNYGTPIPVKVLADRVAMYMHAYTLYSSVRPFGCSVLLGGYDS-DGPQLYMIEPSGVSYGYFGCAIGKGKQAAKTELE 173 (212)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHhccCCCcCCceEEEEEEEEeC-CcCEEEEECCCCCEEeeEEEEECCCCHHHHHHHH
Confidence 99999999999999999988875 369999999999997 6899999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+.|+++||++||+++++++|..+.+.+...+.+|||.++
T Consensus 174 k~~~~dms~eeai~l~~~~L~~~~~~~~~~~~~iei~~~ 212 (212)
T cd03751 174 KLKFSELTCREAVKEAAKIIYIVHDEIKDKAFELELSWV 212 (212)
T ss_pred HhccCCCCHHHHHHHHHHHHHHHhhccCCCCccEEEEEC
Confidence 999999999999999999999999866567788998764
No 23
>TIGR03691 20S_bact_alpha proteasome, alpha subunit, bacterial type. Members of this family are the alpha subunit of the 20S proteasome as found in Actinobacteria such as Mycobacterium, Rhodococcus, and Streptomyces. In most Actinobacteria (an exception is Propionibacterium acnes), the proteasome is accompanied by a system of tagging proteins for degradation with Pup.
Probab=100.00 E-value=5.7e-43 Score=289.05 Aligned_cols=202 Identities=13% Similarity=0.236 Sum_probs=181.4
Q ss_pred CCCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhh
Q psy8684 6 PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA 85 (226)
Q Consensus 6 ~~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 85 (226)
++|+ .+|+++|+|+|||+++||||||+|++. ++.+||++|++||+|+++|+.+|++.++++++.+++.|+
T Consensus 17 ~EYA-~kav~~g~T~VGIk~kdgVVLaaek~~--------~~~~KI~~I~d~ig~~~sG~~~D~~~lv~~~r~~a~~~~- 86 (228)
T TIGR03691 17 AELA-RKGIARGRSVVVLTYADGILFVAENPS--------RSLHKISELYDRIGFAAVGKYNEFENLRRAGIRYADMRG- 86 (228)
T ss_pred HHHH-HHHHHcCCcEEEEEeCCeEEEEEecCC--------CCcCcEEEecCCEEEEEcCCHHHHHHHHHHHHHHHHHHh-
Confidence 4677 899999999999999999999999962 357899999999999999999999999999999999999
Q ss_pred ccccccC-CCCCHHHHHHHHHHHHHh----ccCCceeEEEEEEEeC-CCCeEEEEECCCCceeeee-eEEecCChHHHHH
Q psy8684 86 YGYREMN-EPPLVYRAANLFQKIFRS----NEGSFKAAIIIAGWDT-VKGGQVYALPASGVLTRQN-CAVGGSGSSYILG 158 (226)
Q Consensus 86 ~~~~~~~-~~~~~~~~a~~l~~~~~~----~~~p~~v~~liaG~d~-~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~ 158 (226)
+.++ .+++++.+|+.+++.+.. ..|||+|++|++|||+ +.||+||.+||+|++.+++ ++|+|+|++.+++
T Consensus 87 ---~~~~~~~~~v~~la~~~tq~~~~~~~~~~RP~gvs~Li~G~d~~~~gp~Ly~vDpsG~~~~~~~~~aiG~gs~~a~~ 163 (228)
T TIGR03691 87 ---YSYDRRDVTGRGLANAYAQTLGTIFTEQQKPYEVEICVAEVGETPDQDQLYRITFDGSIVDERGFVVMGGTTEPIAT 163 (228)
T ss_pred ---hhcCCCCccHHHHHHHHHhhcccccccccCcceEEEEEEEEcCCCCCCEEEEECCCCCceeccceEEECCChHHHHH
Confidence 8887 689999999988887654 3589999999999985 4689999999999999865 8999999999999
Q ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHHH--hcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHh
Q psy8684 159 YVDKEWRANMKKQECIDFIKMGLSLAM--ARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFF 220 (226)
Q Consensus 159 ~Le~~~~~~~s~~eai~la~~~l~~~~--~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~ 220 (226)
+||+.|+++||.+||++++++||..+. +++..++.++||.++++++ ...++.|+++||++++
T Consensus 164 ~Lek~y~~~ms~eeai~la~~aL~~~~~~~r~~~~~~~iEv~ii~k~~~~~~f~~l~~~ei~~~l 228 (228)
T TIGR03691 164 ALKESYRDGLSLADALGLAVQALRAGGNGEKRELDAASLEVAVLDRSRPRRAFRRITGEALERLL 228 (228)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHHhccccccCCccceEEEEEeCCCCccceEECCHHHHHhhC
Confidence 999999999999999999999999995 4566888999999999753 1347899999999875
No 24
>cd03756 proteasome_alpha_archeal proteasome_alpha_archeal. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=7.4e-43 Score=286.14 Aligned_cols=187 Identities=23% Similarity=0.344 Sum_probs=177.1
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.+. .++..++.+||++|++++++++||+.+|++.+.++++.+++.|+
T Consensus 19 eya-~~av~~G~t~igik~~dgvvla~d~~~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~-- 94 (211)
T cd03756 19 EYA-REAVKRGTTALGIKCKEGVVLAVDKRITS-KLVEPESIEKIYKIDDHVGAATSGLVADARVLIDRARVEAQIHR-- 94 (211)
T ss_pred HHH-HHHHHcCCCEEEEEECCEEEEEEeccCCC-cccCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH--
Confidence 566 89999999999999999999999999985 67777899999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++++++.+++.+++.+|.++ |||++++|+||||+ .+|+||.+||.|++.+++++|+|+|+++++++|+
T Consensus 95 --~~~~~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~ll~G~D~-~~~~ly~vd~~G~~~~~~~~a~G~g~~~~~~~Le 171 (211)
T cd03756 95 --LTYGEPIDVEVLVKKICDLKQQYTQHGGVRPFGVALLIAGVDD-GGPRLFETDPSGAYNEYKATAIGSGRQAVTEFLE 171 (211)
T ss_pred --HHHCCCCCHHHHHHHHHHHHHHhcCCCCeechhEEEEEEEEeC-CCCEEEEECCCCCeeeeEEEEECCCCHHHHHHHH
Confidence 999999999999999999988763 49999999999997 6899999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE 201 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~ 201 (226)
+.|+++|+++||++++.+||..+.++|. ++..++|++|+
T Consensus 172 ~~~~~~m~~~ea~~l~~~~l~~~~~~~~-~~~~~~v~ii~ 210 (211)
T cd03756 172 KEYKEDMSLEEAIELALKALYAALEENE-TPENVEIAYVT 210 (211)
T ss_pred hhccCCCCHHHHHHHHHHHHHHHhcccC-CCCcEEEEEEe
Confidence 9999999999999999999999998876 88999999986
No 25
>cd03749 proteasome_alpha_type_1 proteasome_alpha_type_1. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=8.1e-43 Score=285.83 Aligned_cols=186 Identities=17% Similarity=0.213 Sum_probs=173.4
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+|.+++ + .+..+||++|+++++|++||+.+|++.+.++++.+++.|+
T Consensus 18 eya-~~av~~G~t~IgIk~~dgVvlaad~r~~~~-l--~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-- 91 (211)
T cd03749 18 EYA-MEAVKQGSATVGLKSKTHAVLVALKRATSE-L--SSYQKKIFKVDDHIGIAIAGLTADARVLSRYMRQECLNYR-- 91 (211)
T ss_pred HHH-HHHHhcCCCEEEEEeCCEEEEEEeccCccc-c--CCccccEEEeCCCEEEEEEeChHhHHHHHHHHHHHHHHHH--
Confidence 355 789999999999999999999999998774 3 4567999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++++++++++.+++.+++.+|.+ +|||++++|++|||. .||+||.+||+|++.+++++|+|+|++.++++||
T Consensus 92 --~~~~~~~~v~~la~~is~~~~~~t~~~~~rP~~v~~ii~G~D~-~gp~Ly~~Dp~G~~~~~~~~a~G~g~~~a~~~Le 168 (211)
T cd03749 92 --FVYDSPIPVSRLVSKVAEKAQINTQRYGRRPYGVGLLIAGYDE-SGPHLFQTCPSGNYFEYKATSIGARSQSARTYLE 168 (211)
T ss_pred --HHhCCCCCHHHHHHHHHHHHHHHhcccCCCCceEEEEEEEEcC-CCCeEEEECCCcCEeeeeEEEECCCcHHHHHHHH
Confidence 99999999999999999988764 469999999999997 6899999999999999999999999999999999
Q ss_pred hhhc--CCCCHHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEc
Q psy8684 162 KEWR--ANMKKQECIDFIKMGLSLAMARDY-ASGGLINIGVLE 201 (226)
Q Consensus 162 ~~~~--~~~s~~eai~la~~~l~~~~~~d~-~~~~~i~i~vi~ 201 (226)
+.|+ ++|+++|++++++++|+.+..+|. .++.+|||++|+
T Consensus 169 ~~~~~~~~ms~ee~i~~~~~~l~~~~~~~~~~~~~~iei~ii~ 211 (211)
T cd03749 169 RHFEEFEDCSLEELIKHALRALRETLPGEQELTIKNVSIAIVG 211 (211)
T ss_pred HhhccccCCCHHHHHHHHHHHHHHHhccCCCCCCCcEEEEEEC
Confidence 9998 699999999999999999999886 788999999984
No 26
>cd03753 proteasome_alpha_type_5 proteasome_alpha_type_5. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=1.4e-42 Score=284.83 Aligned_cols=186 Identities=23% Similarity=0.314 Sum_probs=174.3
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+++++|+|+|||+++||||||+|+|.+. .+...++.+||+.|+++++|++||+.+|++.+.+.++.+++.|+
T Consensus 18 eya-~~a~~~G~t~igik~~dgVvlaad~r~~~-~~~~~~~~~KI~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~-- 93 (213)
T cd03753 18 EYA-IEAIKLGSTAIGIKTKEGVVLAVEKRITS-PLMEPSSVEKIMEIDDHIGCAMSGLIADARTLIDHARVEAQNHR-- 93 (213)
T ss_pred HHH-HHHHhcCCCEEEEEeCCEEEEEEecccCC-cCcCCCccceEEEEcCCEEEEEecCHHHHHHHHHHHHHHHHHHH--
Confidence 466 89999999999999999999999999986 56667889999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc----------CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHH
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE----------GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYI 156 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~----------~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~ 156 (226)
++++++++++.+++.+++++|.++ +||++++|+||||+ .||+||.+||+|++.+++++|+|+|++++
T Consensus 94 --~~~~~~i~~~~~~~~ls~~~~~~~~~~~~~~~~~rP~~v~~ii~G~D~-~gp~Ly~vd~~G~~~~~~~~a~G~~~~~~ 170 (213)
T cd03753 94 --FTYNEPMTVESVTQAVSDLALQFGEGDDGKKAMSRPFGVALLIAGVDE-NGPQLFHTDPSGTFTRCDAKAIGSGSEGA 170 (213)
T ss_pred --HHhCCCCCHHHHHHHHHHHHHHHhCcccccccccccceEEEEEEEEcC-CCCEEEEECCCCCeecccEEEECCCcHHH
Confidence 999999999999999999998753 69999999999997 78999999999999999999999999999
Q ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+++|++.|+++|+++||++++++||+.+.+++ .++..+||+++
T Consensus 171 ~~~L~~~~~~~ls~eeai~l~~~~l~~~~~~~-~~~~~~ei~~~ 213 (213)
T cd03753 171 QSSLQEKYHKDMTLEEAEKLALSILKQVMEEK-LNSTNVELATV 213 (213)
T ss_pred HHHHHhhccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEC
Confidence 99999999999999999999999999998765 67789999875
No 27
>cd01911 proteasome_alpha proteasome alpha subunit. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 different alpha and 10 different beta proteasome subunit genes while archaea have one of each.
Probab=100.00 E-value=1.6e-42 Score=283.79 Aligned_cols=187 Identities=21% Similarity=0.320 Sum_probs=176.2
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+++++|+|+||++++||||||+|+|.+.+ ++..++.+||++|++++++++||..+|++.+.+.++..++.|+
T Consensus 18 eya-~~~~~~G~tvigi~~~dgVvlaaD~~~~~~-~~~~~~~~KI~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~-- 93 (209)
T cd01911 18 EYA-LEAVKNGSTAVGIKGKDGVVLAVEKKVTSK-LLDPSSVEKIFKIDDHIGCAVAGLTADARVLVNRARVEAQNYR-- 93 (209)
T ss_pred HHH-HHHHHcCCCEEEEEECCEEEEEEEecCCcc-ccCCcccceEEEecCCeEEEeccCcHhHHHHHHHHHHHHHHHH--
Confidence 355 789999999999999999999999999874 6667899999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
.++|++++++.+|++++++++.+ .|||++++|++|||++++|+||.+||.|++.+++++++|+|+.+++++|+
T Consensus 94 --~~~g~~~~~~~la~~ls~~~~~~~~~~~~rP~~v~~iv~G~d~~~~~~Ly~iD~~G~~~~~~~~a~G~g~~~~~~~L~ 171 (209)
T cd01911 94 --YTYGEPIPVEVLVKRIADLAQVYTQYGGVRPFGVSLLIAGYDEEGGPQLYQTDPSGTYFGYKATAIGKGSQEAKTFLE 171 (209)
T ss_pred --HHhCCCCCHHHHHHHHHHHHHHHhcccCccChhheEEEEEEcCCCCcEEEEECCCCCeeeeeEEEeCCCcHHHHHHHH
Confidence 89999999999999999998755 35999999999999866999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+.|+++|+.+||++++.+||..+.++|. ++..++++++
T Consensus 172 ~~~~~~ms~~ea~~l~~~~l~~~~~~d~-~~~~~~i~i~ 209 (209)
T cd01911 172 KRYKKDLTLEEAIKLALKALKEVLEEDK-KAKNIEIAVV 209 (209)
T ss_pred HhcccCCCHHHHHHHHHHHHHHHHhccC-CCCcEEEEEC
Confidence 9999999999999999999999999998 8999999875
No 28
>cd03754 proteasome_alpha_type_6 proteasome_alpha_type_6. The 20S proteasome, multisubunit proteolytic complex, is the central enzyme of nonlysosomal protein degradation in both the cytosol and nucleus. It is composed of 28 subunits arranged as four homoheptameric rings that stack on top of one another forming an elongated alpha-beta-beta-alpha cylinder with a central cavity. The proteasome alpha and beta subunits are members of the N-terminal nucleophile (Ntn)-hydrolase superfamily. Their N-terminal threonine residues are exposed as a nucleophile in peptide bond hydrolysis. Mammals have 7 alpha and 7 beta proteasome subunits while archaea have one of each.
Probab=100.00 E-value=4e-42 Score=282.44 Aligned_cols=187 Identities=17% Similarity=0.239 Sum_probs=172.6
Q ss_pred CCCCCccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhh
Q psy8684 7 DISAGTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA 85 (226)
Q Consensus 7 ~~~~~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 85 (226)
+|+ .+|+++ |+|+|||+++||||||+|+|.+.+ ++..+..+||++|+++++|++||+.+|++.+.+++|.+++.|+
T Consensus 19 eya-~~a~~~~g~t~igi~~~d~Vvlaad~r~~~~-~i~~~~~~Ki~~I~~~i~~~~sG~~~D~~~l~~~~r~~~~~~~- 95 (215)
T cd03754 19 EYA-FKAVKNAGLTSVAVRGKDCAVVVTQKKVPDK-LIDPSTVTHLFRITDEIGCVMTGMIADSRSQVQRARYEAAEFK- 95 (215)
T ss_pred HhH-HHHHhcCCccEEEEEeCCEEEEEEecccccc-ccCCcccCceEEEcCCEEEEEEechhhHHHHHHHHHHHHHHHH-
Confidence 466 899875 889999999999999999999874 5555688999999999999999999999999999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHH
Q psy8684 86 YGYREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYV 160 (226)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~L 160 (226)
++++++++++.+|+.+++++|.+ .|||++++|+||||++++|+||.+||+|++.+++++|+|+|+..++++|
T Consensus 96 ---~~~~~~i~v~~la~~ls~~~q~yt~~~~~RP~~v~~ii~G~D~~~gp~Ly~~Dp~Gs~~~~~~~a~G~gs~~~~~~L 172 (215)
T cd03754 96 ---YKYGYEMPVDVLAKRIADINQVYTQHAYMRPLGVSMILIGIDEELGPQLYKCDPAGYFAGYKATAAGVKEQEATNFL 172 (215)
T ss_pred ---HHHCCCCCHHHHHHHHHHHHHHHhCCCCCcCCeeEEEEEEEeCCCCeEEEEEcCCccEEeEEEEEECCCcHHHHHHH
Confidence 99999999999999999987655 2599999999999976799999999999999999999999999999999
Q ss_pred hhhhcCC--C--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 161 DKEWRAN--M--KKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 161 e~~~~~~--~--s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
|+.|+++ | |.+||++++++||..+.++|.. +..+||.++
T Consensus 173 e~~~~~~~~~~~s~eeai~l~~~al~~~~~rd~~-~~~~ei~~~ 215 (215)
T cd03754 173 EKKLKKKPDLIESYEETVELAISCLQTVLSTDFK-ATEIEVGVV 215 (215)
T ss_pred HHHhccccccCCCHHHHHHHHHHHHHHHhcccCC-CCcEEEEEC
Confidence 9999985 7 9999999999999999999964 899999874
No 29
>KOG0178|consensus
Probab=100.00 E-value=2e-42 Score=271.52 Aligned_cols=211 Identities=16% Similarity=0.230 Sum_probs=198.0
Q ss_pred CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684 8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG 87 (226)
Q Consensus 8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 87 (226)
|+ .+++.+.+|+|||.++||||||++++.++..+-.+.+.+||++|+|+|+|+++|+++|+..|++++|..+|+|.
T Consensus 23 yA-meais~aGt~iGila~DGvvLa~e~k~t~kll~t~~~~EKiY~l~d~iaC~vaGlt~DAnvL~n~aRi~AQ~yl--- 98 (249)
T KOG0178|consen 23 YA-MEAISHAGTCIGILASDGVVLAGENKVTSKLLDTSIPMEKIYKLNDNIACAVAGLTSDANVLKNYARIIAQRYL--- 98 (249)
T ss_pred HH-HHHHhhhcceeEEEecCceEEEeecccchhhhhccccHHHhhhcCCceEEEEecccccHHHHHHHHHHHHHHHH---
Confidence 45 78899999999999999999999999999877788899999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684 88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK 162 (226)
Q Consensus 88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~ 162 (226)
+++|+++|++.+...++++.|.|+ ||||||+|.+|||...|.+||+.||+|++..|++.|+|.++..+++.|+.
T Consensus 99 -~~y~e~iP~eqLv~~lcdiKQayTQygG~RPFGVSfLYaGwd~~~gyqLy~SdPSGny~gWka~ciG~N~~Aa~s~Lkq 177 (249)
T KOG0178|consen 99 -FRYGEEIPCEQLVTFLCDIKQAYTQYGGKRPFGVSFLYAGWDDRYGYQLYQSDPSGNYGGWKATCIGANSGAAQSMLKQ 177 (249)
T ss_pred -HHhCCCCcHHHHHHHHHHHHHHHhhccCcCCCceeeeeeceecCcceEEEecCCCCCccccceeeeccchHHHHHHHHh
Confidence 999999999999999999999885 69999999999999889999999999999999999999999999999999
Q ss_pred hhcCC-CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhcc
Q psy8684 163 EWRAN-MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 163 ~~~~~-~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~ 223 (226)
.|+.+ ++++||..+|++.|..+.+.+..+...+|+..++++. +...++++++||..+++..
T Consensus 178 dykdd~~~~~eA~~laikvL~kt~d~~~lt~eklEia~~~k~~~k~v~~i~~~~ev~kll~k~ 240 (249)
T KOG0178|consen 178 DYKDDENDLEEAKALAIKVLSKTLDSGSLTAEKLEIATITKDCNKTVLKILKKDEVLKLLEKY 240 (249)
T ss_pred hhccccccHHHHHHHHHHHHHhhcccCCCChhheEEEEEEecCCceEEEecCHHHHHHHHHHh
Confidence 99866 5699999999999999999998889999999999975 3457789999999998765
No 30
>PF00227 Proteasome: Proteasome subunit; InterPro: IPR001353 ATP-dependent protease complexes are present in all three kingdoms of life, where they rid the cell of misfolded or damaged proteins and control the level of certain regulatory proteins. They include the proteasome in Eukaryotes, Archaea, and Actinomycetales and the HslVU (ClpQY, clpXP) complex in other eubacteria. Genes homologous to eubacterial HslV (ClpQ) and HslU (ClpY, clpX) have also been demonstrated in to be present in the genome of trypanosomatid protozoa []. The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). The prokaryotic ATP-dependent proteasome is coded for by the heat-shock locus VU (HslVU). It consists of HslV, the protease (MEROPS peptidase subfamily T1B), and HslU, IPR004491 from INTERPRO, the ATPase and chaperone belonging to the AAA/Clp/Hsp100 family. The crystal structure of Thermotoga maritima HslV has been determined to 2.1-A resolution. The structure of the dodecameric enzyme is well conserved compared to those from Escherichia coli and Haemophilus influenzae [, ]. This entry contains threonine peptidases and non-peptidase homologs belong to MEROPS peptidase family T1 (proteasome family, clan PB(T)). The family consists of the protease components of the archaeal and bacterial proteasomes and the alpha and beta subunits of the eukaryotic proteasome. ; GO: 0004298 threonine-type endopeptidase activity, 0051603 proteolysis involved in cellular protein catabolic process, 0005839 proteasome core complex; PDB: 3KRD_1 3H6F_M 2FHH_F 3HF9_F 2FHG_D 3HFA_B 3H6I_K 3MI0_A 3MFE_1 3MKA_F ....
Probab=100.00 E-value=2.9e-41 Score=271.89 Aligned_cols=183 Identities=26% Similarity=0.375 Sum_probs=168.4
Q ss_pred ccCCceEEEEEeCCeEEEEEeCCccCCceeeecc-cCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNRE-AEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN 92 (226)
Q Consensus 14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~-~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 92 (226)
|++|+|+|||+++|||+||+|+|.+.|..+..++ .+||++|++|+++++||..+|++.+.++++.+++.|+ +.++
T Consensus 1 v~~G~t~vgi~~~dgvvla~d~~~~~g~~~~~~~~~~ki~~i~~~i~~~~sG~~~D~~~l~~~l~~~~~~~~----~~~~ 76 (190)
T PF00227_consen 1 VNNGTTVVGIKGKDGVVLAADKRISYGSKLRSPNTVDKIFKINDNIIIGFSGLTADFQYLIRRLREEAQEYR----FSYG 76 (190)
T ss_dssp HHTSBEEEEEEESSEEEEEEEEEEEETTEEEESSTSSSEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHS
T ss_pred CCCCeEEEEEEECCEEEEEEccccccccccccccccceeeeccCcceeeccccccchHHHHhhhcccchhhh----hccC
Confidence 5789999999999999999999999887775666 6999999999999999999999999999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHH----h-ccCCceeEEEEEEEeCCCCeEEEEECCCCceeee-eeEEecCChHHHHHHHhhhhcC
Q psy8684 93 EPPLVYRAANLFQKIFR----S-NEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ-NCAVGGSGSSYILGYVDKEWRA 166 (226)
Q Consensus 93 ~~~~~~~~a~~l~~~~~----~-~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~-~~~a~Gsg~~~~~~~Le~~~~~ 166 (226)
.+++++.+++.+.+.++ . +++|+++++|+||||++++|+||.+||+|++.++ +++|+|+|+++++++|++.|++
T Consensus 77 ~~~~~~~l~~~~~~~~~~~~~~~~~~p~~~~~li~G~d~~~~~~l~~vd~~G~~~~~~~~~aiG~g~~~~~~~l~~~~~~ 156 (190)
T PF00227_consen 77 RPISPEYLAKAIASLIQNYTYRSGRRPYGVSLLIAGYDEDGGPQLYSVDPSGSYIECKRFAAIGSGSQFAQPILEKLYKP 156 (190)
T ss_dssp SGTCHHHHHHHHHHHHHHHHHHTTTSTTSEEEEEEEEETTTEEEEEEEETTSEEEEBSSEEEESTTHHHHHHHHHHHHTT
T ss_pred ccccchhhhhhhHHHHhhhcccccccCccccceeeeeccccccceeeeccccccccccccccchhcchhhhHHHHhhccC
Confidence 99999955555554443 3 3579999999999998677999999999999999 6999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 167 NMKKQECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 167 ~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+|+++||++++++||+.+.++|..+++++++++|
T Consensus 157 ~~~~~ea~~~~~~~l~~~~~~d~~~~~~~~v~vi 190 (190)
T PF00227_consen 157 DLSLEEAIELALKALKEAIDRDILSGDNIEVAVI 190 (190)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHBTTSTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCccCCeEEEEEC
Confidence 9999999999999999999999999999999986
No 31
>cd01906 proteasome_protease_HslV proteasome_protease_HslV. This group contains the eukaryotic proteosome alpha and beta subunits and the prokaryotic protease hslV subunit. Proteasomes are large multimeric self-compartmentalizing proteases, involved in the clearance of misfolded proteins, the breakdown of regulatory proteins, and the processing of proteins such as the preparation of peptides for immune presentation. Two main proteasomal types are distinguished by their different tertiary structures: the eukaryotic/archeal 20S proteasome and the prokaryotic proteasome-like heat shock protein encoded by heat shock locus V, hslV. The proteasome core particle is a highly conserved cylindrical structure made up of non-identical subunits that have their active sites on the inner walls of a large central cavity. The proteasome subunits of bacteria, archaea, and eukaryotes all share a conserved Ntn (N terminal nucleophile) hydrolase fold and a catalytic mechanism involving an N-terminal nucleo
Probab=100.00 E-value=4.5e-41 Score=269.00 Aligned_cols=179 Identities=31% Similarity=0.477 Sum_probs=172.4
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+|||+++||||||+|+|.+++.....++.+|||.|+++++++++|..+|++.+.++++.++..|+ +++++++++
T Consensus 1 tt~igi~~~dgvvla~d~~~~~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~----~~~~~~~~~ 76 (182)
T cd01906 1 TTIVGIKGKDGVVLAADKRVTSGLLVASSTVEKIFKIDDHIGCAFAGLAADAQTLVERLRKEAQLYR----LRYGEPIPV 76 (182)
T ss_pred CcEEEEEeCCEEEEEEecccCCcCeecCCCcceEEEECCCEEEEEeeCHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence 6899999999999999999999877778999999999999999999999999999999999999999 899999999
Q ss_pred HHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684 98 YRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECI 174 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai 174 (226)
+.+++.+++++|.++ +||++++|+||||.+++|+||.+||.|++.+++++|+|+|+.+++++|++.|+++||.+||+
T Consensus 77 ~~l~~~l~~~~~~~~~~~~p~~~~~lv~G~d~~~~~~Ly~id~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~s~~ea~ 156 (182)
T cd01906 77 EALAKLLANLLYEYTQSLRPLGVSLLVAGVDEEGGPQLYSVDPSGSYIEYKATAIGSGSQYALGILEKLYKPDMTLEEAI 156 (182)
T ss_pred HHHHHHHHHHHHHhCCCccChheEEEEEEEeCCCCcEEEEECCCCCEeeccEEEECCCcHHHHHHHHHHccCCCCHHHHH
Confidence 999999999999987 79999999999997679999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 175 DFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 175 ~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
+++++||..+.++|..++.++++.++
T Consensus 157 ~l~~~~l~~~~~~~~~~~~~~~i~ii 182 (182)
T cd01906 157 ELALKALKSALERDLYSGGNIEVAVI 182 (182)
T ss_pred HHHHHHHHHHHcccCCCCCCEEEEEC
Confidence 99999999999999989999999875
No 32
>KOG0174|consensus
Probab=100.00 E-value=1.3e-41 Score=263.84 Aligned_cols=207 Identities=49% Similarity=0.885 Sum_probs=199.7
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
...+..|||++|+.++|||||++|+|.+.|.++.++..+||.+|.|+|+||-||.++|.|.+.+.++.++..|. ..
T Consensus 13 ~~evstGTTImAv~y~gGVvlGaDSRTs~GayvanRvtDKlT~itD~i~cCRSGSAADtQaiaD~~~Y~L~~~~----~q 88 (224)
T KOG0174|consen 13 KEEVSTGTTIMAVEYDGGVVLGADSRTSTGAYVANRVTDKLTPITDNIYCCRSGSAADTQAIADIVRYHLELYT----IQ 88 (224)
T ss_pred ccccccCceEEEEEEcCcEEEeccCCccchHHHHhhhcccceeccccEEEecCCchhhHHHHHHHHHHHHHHhh----hh
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKK 170 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~ 170 (226)
.++++++...|+.+++++|++|..+.+.+|+||||+..|.++|.+.-.|...+.++...|||+.+++++++..|+++|++
T Consensus 89 ~~~~p~v~~aA~l~r~~~Y~~re~L~AgliVAGwD~~~gGqVY~iplGG~l~rq~~aIgGSGStfIYGf~D~~~r~nMt~ 168 (224)
T KOG0174|consen 89 ENKPPLVHTAASLFREICYNYREMLSAGLIVAGWDEKEGGQVYSIPLGGSLTRQPFAIGGSGSTFIYGFCDANWRPNMTL 168 (224)
T ss_pred cCCCchHHHHHHHHHHHHHhCHHhhhcceEEeecccccCceEEEeecCceEeecceeeccCCceeeeeeehhhcCCCCCH
Confidence 99999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 171 QECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
||++++..+|+..|.+||-.+|+.|.+.+|+++| +.++.+.++++..+..+
T Consensus 169 EE~~~fvk~Av~lAi~rDGsSGGviR~~~I~~~G-ver~~~~~d~~~~~~v~ 219 (224)
T KOG0174|consen 169 EECVRFVKNAVSLAIERDGSSGGVIRLVIINKAG-VERRFFPGDKLGQFAVE 219 (224)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCEEEEEEEccCC-ceEEEecCCcccccccc
Confidence 9999999999999999999999999999999999 99999999998876544
No 33
>KOG0183|consensus
Probab=100.00 E-value=6e-41 Score=263.74 Aligned_cols=207 Identities=16% Similarity=0.283 Sum_probs=193.1
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ ++|+.+|+|+||++++|+|||+.+++... .+.+.+...||..+++|++|+++|+.+|++.++++.|-+|+.|+
T Consensus 21 EYA-qEAvrkGstaVgvrg~~~vvlgvEkkSv~-~Lq~~r~~rkI~~ld~hV~mafaGl~aDArilinrArvecqShr-- 96 (249)
T KOG0183|consen 21 EYA-QEAVRKGSTAVGVRGNNCVVLGVEKKSVP-KLQDERTVRKISMLDDHVVMAFAGLTADARILINRARVECQSHR-- 96 (249)
T ss_pred HhH-HHHHhcCceEEEeccCceEEEEEeecchh-hhhhhhhhhhheeecceeeEEecCCCccceeehhhHhHhhhhhh--
Confidence 467 99999999999999999999999998776 78888999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
++.+.+++++.++++++.+.|+|+ ||||++.|++|+|+++.|+||+++|+|.+++|.+.|+|.+++.++.+||
T Consensus 97 --lt~edpvtveyitRyiA~~kQrYTqs~grRPFGvs~Li~GfD~~g~p~lyqtePsG~f~ewka~aiGr~sk~VrEflE 174 (249)
T KOG0183|consen 97 --LTLEDPVTVEYITRYIAGLKQRYTQSNGRRPFGVSTLIGGFDPDGTPRLYQTEPSGIFSEWKANAIGRSSKTVREFLE 174 (249)
T ss_pred --cccCCCcHHHHHHHHHHHhhhhhhccCCcccccceEEEEeeCCCCCeeeEeeCCCcchhhhhccccccccHHHHHHHH
Confidence 999999999999999999999884 6999999999999988899999999999999999999999999999999
Q ss_pred hhhcCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 162 KEWRAN--MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 162 ~~~~~~--~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
++|..+ .+..++++|++++|...... .+.++++.|+++++. ++.|..++|+.++.+|.
T Consensus 175 K~y~e~~~~~~~~~ikL~ir~LleVvqs---~~~nie~aVm~~~~~--~~~l~~~~I~~~v~~ie 234 (249)
T KOG0183|consen 175 KNYKEEAIATEGETIKLAIRALLEVVQS---GGKNIEVAVMKRRKD--LKMLESEEIDDIVKEIE 234 (249)
T ss_pred HhcccccccccccHHHHHHHHHHHHhhc---CCCeeEEEEEecCCc--eeecCHHHHHHHHHHHH
Confidence 999866 68899999999999999875 458999999999773 57899999999987763
No 34
>KOG0179|consensus
Probab=100.00 E-value=3.2e-38 Score=247.59 Aligned_cols=203 Identities=26% Similarity=0.346 Sum_probs=188.3
Q ss_pred CCCCCCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHh
Q psy8684 3 PNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDL 82 (226)
Q Consensus 3 ~~~~~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~ 82 (226)
|.-++|+ +. ..+|+|+|||.+.|++|+|+|+|.++|..+.++.++|||+++|+++++.+|.++|+..|...++...+.
T Consensus 17 ~~~~~f~-PY-~~NGGT~vaIaG~dFavvA~DTR~s~gy~I~sR~~~Ki~~l~D~~vl~~sGF~aD~l~L~k~i~~r~~~ 94 (235)
T KOG0179|consen 17 MDHERFS-PY-EDNGGTTVAIAGEDFAVVAGDTRMSSGYNINSRDQSKIFKLGDNIVLGSSGFYADTLALVKVIKSRIKQ 94 (235)
T ss_pred cccccCC-cc-ccCCceEEEEcCCceEEEecccccccceeeeccccchheeccCceEEecccchhhHHHHHHHHHHHHHH
Confidence 4467888 44 457778889999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccCCCCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 83 DVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
|+ .++...|++..+|++|+.++|..|+ ||.+..++||+|+++++.+|.+||.|++.+..+.|.|+++.+++++|+
T Consensus 95 Y~----~~h~k~ms~~s~A~lls~~LY~kRFFPYYv~~ilaGiDeeGKG~VySyDPvGsyer~~~~AgGsa~~mI~PfLD 170 (235)
T KOG0179|consen 95 YE----HDHNKKMSIHSAAQLLSTILYSKRFFPYYVFNILAGIDEEGKGAVYSYDPVGSYERVTCRAGGSAASMIQPFLD 170 (235)
T ss_pred Hh----hcccccccHHHHHHHHHHHHhhcccccceeeeeeecccccCceeEEeecCCcceeeeeeecCCcchhhhhhhhh
Confidence 99 9999999999999999999998885 999999999999989999999999999999999999999999999999
Q ss_pred hhhc-----------CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684 162 KEWR-----------ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT 212 (226)
Q Consensus 162 ~~~~-----------~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~ 212 (226)
+... +.+++++|+.++.+++..|.+||..+|+.++|++++++| +..+.++
T Consensus 171 nQi~~kn~~~e~~~~~~Ls~e~ai~lv~d~F~SAaERdI~tGD~l~i~I~tk~g-V~~e~~~ 231 (235)
T KOG0179|consen 171 NQIGHKNQNLENAERTPLSLERAIRLVKDAFTSAAERDIYTGDKLEICIITKDG-VEVETLP 231 (235)
T ss_pred hhccCcCcccccCcccccCHHHHHHHHHHHhhhhhhcccccCCcEEEEEEecCC-EEEEeee
Confidence 7642 246899999999999999999999999999999999999 8776554
No 35
>KOG0175|consensus
Probab=100.00 E-value=7.7e-39 Score=257.91 Aligned_cols=201 Identities=26% Similarity=0.442 Sum_probs=192.8
Q ss_pred ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE 93 (226)
Q Consensus 14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (226)
+.+|||++|+++++||++|+|+|.+.|.+|-+...+||.+|+++.+-.++|-++|++++-+.+..+|..|+ +++++
T Consensus 68 ~~hGTTTLAF~f~~GvivAvDSRAs~G~YIasqtv~KVIeIn~ylLGTmAGgAADCqfWer~L~kecRL~e----LRnke 143 (285)
T KOG0175|consen 68 FAHGTTTLAFKFKGGVIVAVDSRASAGSYIASQTVKKVIEINPYLLGTMAGGAADCQFWERVLAKECRLHE----LRNKE 143 (285)
T ss_pred ecCCceEEEEEecCcEEEEEeccccccceeechhhceeeeechhhhhcccCcchhhHHHHHHHHHHHHHHH----HhcCc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHH
Q psy8684 94 PPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE 172 (226)
Q Consensus 94 ~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~e 172 (226)
.|+|...++.|++++++|+. -+.+..+|+|||. .||.||.+|..|+....+-.++|||+.+|+++|++.|+++|+.+|
T Consensus 144 riSVsaASKllsN~~y~YkGmGLsmGtMi~G~Dk-~GP~lyYVDseG~Rl~G~~FSVGSGs~yAYGVLDsgYr~dls~eE 222 (285)
T KOG0175|consen 144 RISVSAASKLLSNMVYQYKGMGLSMGTMIAGWDK-KGPGLYYVDSEGTRLSGDLFSVGSGSTYAYGVLDSGYRYDLSDEE 222 (285)
T ss_pred ceehHHHHHHHHHHHhhccCcchhheeeEeeccC-CCCceEEEcCCCCEecCceEeecCCCceeEEeeccCCCCCCCHHH
Confidence 99999999999999999986 5889999999998 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 173 CIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 173 ai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
|.+|+++++..|..||..+|+.+.+++|+.|| .. .+.+.|+.+++.+
T Consensus 223 A~~L~rrAI~hAThRDaySGG~vnlyHv~edG-W~--~v~~~Dv~~L~~~ 269 (285)
T KOG0175|consen 223 AYDLARRAIYHATHRDAYSGGVVNLYHVKEDG-WV--KVSNTDVSELHYH 269 (285)
T ss_pred HHHHHHHHHHHHHhcccccCceEEEEEECCcc-ce--ecCCccHHHHHHH
Confidence 99999999999999999999999999999999 54 4789999888443
No 36
>KOG0181|consensus
Probab=100.00 E-value=3.4e-39 Score=250.50 Aligned_cols=205 Identities=19% Similarity=0.309 Sum_probs=192.1
Q ss_pred CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684 8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG 87 (226)
Q Consensus 8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 87 (226)
++ ..|+.+|.+.|||+-.||||||++++..+ .+....+.+|++.|.+||+|..||+.+|++.+++..|..++.|.
T Consensus 24 yA-L~Av~~G~~SvGi~A~nGvVlatekk~~s-~L~~~~sv~KV~~i~~~IG~vYSGmgpD~RvlV~~~rkiAe~Yy--- 98 (233)
T KOG0181|consen 24 YA-LTAVVNGQTSVGIKAANGVVLATEKKDVS-PLVDEESVRKVEKITPHIGCVYSGMGPDYRVLVHKSRKIAEQYY--- 98 (233)
T ss_pred HH-HHHHhCCCCceeeeecCceEEEeccCCCC-ccchhhhhhhHhhccCCcceEEecCCCceeehhhHHHHHHHHHH---
Confidence 44 67899999999999999999999998777 67778899999999999999999999999999999999999998
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684 88 YREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK 162 (226)
Q Consensus 88 ~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~ 162 (226)
..|++++|+..+.+.++..+|+|+ ||||+++++||||. ++|.||++||+|++..|+++|.|.+...+..+||+
T Consensus 99 -~vY~e~~pt~qlv~~~asvmQEyTqsgGvrPFGvslliaG~~~-~~p~LyQvdPSGsyf~wkatA~Gkn~v~aktFlEk 176 (233)
T KOG0181|consen 99 -RVYGEPIPTTQLVQEVASVMQEYTQSGGVRPFGVSLLIAGWDE-GGPLLYQVDPSGSYFAWKATAMGKNYVNAKTFLEK 176 (233)
T ss_pred -HHhcCCCCHHHHHHHHHHHHHHHhhcCCccccceEEEEeecCC-CceeEEEECCccceeehhhhhhccCcchHHHHHHH
Confidence 899999999999999999999996 59999999999998 79999999999999999999999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684 163 EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 163 ~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~ 223 (226)
+|+.++.+++++..|+..|+...+... +..++||.++..++ |+.|++.||+.+|.++
T Consensus 177 R~~edleldd~ihtailtlkE~fege~-~~~nieigv~~~~~---F~~lt~~eI~d~l~~l 233 (233)
T KOG0181|consen 177 RYNEDLELDDAIHTAILTLKESFEGEM-TAKNIEIGVCGENG---FRRLTPAEIEDYLASL 233 (233)
T ss_pred HhccccccchHHHHHHHHHHHHhcccc-ccCceEEEEecCCc---eeecCHHHHHHHHhcC
Confidence 999999999999999999999987654 67999999999766 7889999999999864
No 37
>KOG0173|consensus
Probab=100.00 E-value=6e-38 Score=252.22 Aligned_cols=193 Identities=28% Similarity=0.536 Sum_probs=186.9
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
-+.++++.+.|||++|+.++||||+++|+|.|.|.++...+.+||+.+.++|+|+.+|.++|...+.+.+..+.+.|+
T Consensus 27 g~k~p~~tkTGTtIvgv~~k~gvIlgADtRaT~G~IvaDKnC~KIH~ia~~IyccGAGtAADte~vt~m~ss~l~Lh~-- 104 (271)
T KOG0173|consen 27 GLKAPKATKTGTTIVGVIFKDGVILGADTRATEGPIVADKNCEKIHFIAPNIYCCGAGTAADTEMVTRMISSNLELHR-- 104 (271)
T ss_pred CCCCCcccccCcEEEEEEeCCeEEEeecccccCCCeeecchhHHHhhcccceEEccCCchhhHHHHHHHHHHHHHHHH--
Confidence 355788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA 166 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~ 166 (226)
++.++.++|..+-+++++.+.+|..-.++.++++|+|. .||+||++.|.|+....+|.+.|||+..++++||..|+|
T Consensus 105 --l~t~R~~rVv~A~~mlkQ~LFrYqG~IgA~LiiGGvD~-TGpHLy~i~phGStd~~Pf~alGSGslaAmsvlEsr~k~ 181 (271)
T KOG0173|consen 105 --LNTGRKPRVVTALRMLKQHLFRYQGHIGAALILGGVDP-TGPHLYSIHPHGSTDKLPFTALGSGSLAAMSVLESRWKP 181 (271)
T ss_pred --hccCCCCceeeHHHHHHHHHHHhcCcccceeEEccccC-CCCceEEEcCCCCcCccceeeeccchHHHHHHHHHhcCc
Confidence 99999999999999999999999999999999999999 799999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 167 NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 167 ~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
+|+.|||++|+.+|+.+.+..|..+|+++++|||++.+
T Consensus 182 dlt~eea~~Lv~eAi~AGi~nDLgSGsnvdlcVI~~~~ 219 (271)
T KOG0173|consen 182 DLTKEEAIKLVCEAIAAGIFNDLGSGSNVDLCVITKKG 219 (271)
T ss_pred ccCHHHHHHHHHHHHHhhhccccCCCCceeEEEEeCCC
Confidence 99999999999999999999999999999999999766
No 38
>KOG0184|consensus
Probab=100.00 E-value=1.9e-37 Score=245.20 Aligned_cols=204 Identities=15% Similarity=0.122 Sum_probs=182.1
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ +||+.+++|+|||+|+||||+++|+.+++ .+...++..||+.|++||+|+++|+.+|.+.+.+++|.++..|+
T Consensus 25 eYA-~KAven~~T~IGIk~kdGVVl~vEKli~S-kLy~p~sn~ri~~V~r~iG~avaGl~~Dg~~l~~~ar~ea~~~~-- 100 (254)
T KOG0184|consen 25 EYA-QKAVENSGTCIGIKCKDGVVLAVEKLITS-KLYEPGSNERIFSVDRHIGMAVAGLIPDGRHLVNRARDEAASWR-- 100 (254)
T ss_pred HHH-HHHHhcCCcEEEEecCCeEEEEEeeeecc-cccccCCCCceEeecccccEEEeccccchHHHHHHHHHHHHHHH--
Confidence 356 89999999999999999999999999999 56677889999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHh
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVD 161 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le 161 (226)
-+++.++|.+.+++.+.++.|-++ ||||++.++++||. +||+||.++|+|.+..+..+|+|.|.+.+...||
T Consensus 101 --~~y~~piP~~~la~rva~yvh~~Tly~~vRpfG~~~~~~~yd~-~g~~LymiepSG~~~~Y~~aaiGKgrq~aKtElE 177 (254)
T KOG0184|consen 101 --KNYGDPIPGKHLADRVADYVHAFTLYSSVRPFGASTILGSYDD-EGPQLYMIEPSGSSYGYKGAAIGKGRQAAKTELE 177 (254)
T ss_pred --HhcCCCCchHHHHHHHHhhhheeehhhccccccceEEEEEEeC-CCceEEEEcCCCCccceeeeeccchhHHHHHHHH
Confidence 899999999999999999998775 69999999999996 8999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhh
Q psy8684 162 KEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQH 218 (226)
Q Consensus 162 ~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~ 218 (226)
+.--.+|+.+|+++.+.+.|..+.+......-.+|+.++.....-..+. -|.||.+
T Consensus 178 KL~~~~mt~~e~VkeaakIiY~~HDe~KdK~feiEm~wvg~eTnG~h~~-vp~el~~ 233 (254)
T KOG0184|consen 178 KLKIDEMTCKELVKEAAKIIYKVHDENKDKEFEIEMGWVGEETNGLHEK-VPSELLE 233 (254)
T ss_pred hcccccccHHHHHHHHHheeEeecccccCcceEEEEEEEEeecCCcccc-CcHHHHH
Confidence 9877899999999999999999987766666779999888642122333 3445543
No 39
>KOG0182|consensus
Probab=100.00 E-value=2.2e-36 Score=237.59 Aligned_cols=212 Identities=15% Similarity=0.201 Sum_probs=199.2
Q ss_pred CCCCCccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhh
Q psy8684 7 DISAGTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVA 85 (226)
Q Consensus 7 ~~~~~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~ 85 (226)
+|+ -||+++ |-|+||++++|++|+++.++.+. .++.++....+|+|+.+|+|+++|..+|++..+.++|.++.+++
T Consensus 26 EYa-fkAin~~gltsVavrgkDcavvvsqKkvpD-KLld~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~~- 102 (246)
T KOG0182|consen 26 EYA-FKAINQAGLTSVAVRGKDCAVVVTQKKVPD-KLLDSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEFR- 102 (246)
T ss_pred ehH-HHHhhcCCCceEEEcCCceEEEEecccCcc-cccccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhhh-
Confidence 455 789998 88999999999999999998887 78888999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHH
Q psy8684 86 YGYREMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYV 160 (226)
Q Consensus 86 ~~~~~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~L 160 (226)
+.+|.+||++.|++.+.++-|.|+ ||+|+.+++.|+|++.||.+|.+||.|.+..+++.|.|-....+.++|
T Consensus 103 ---yk~Gyemp~DiL~k~~Ad~~QvytQ~a~mRplg~~~~~i~~D~E~gP~vYk~DpAGyy~g~kAtaaG~Kq~e~tsfL 179 (246)
T KOG0182|consen 103 ---YKYGYEMPCDILAKRMADKSQVYTQNAAMRPLGVAATLIGVDEERGPSVYKTDPAGYYYGFKATAAGVKQQEATSFL 179 (246)
T ss_pred ---hhcCCCCCHHHHHHHHhhHHHHHhhhhhhcccceeEEEEEeccccCcceEeecCccccccceeeecccchhhHHHHH
Confidence 999999999999999999988774 699999999999998899999999999999999999999999999999
Q ss_pred hhhhcCC--CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCCC
Q psy8684 161 DKEWRAN--MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEATF 226 (226)
Q Consensus 161 e~~~~~~--~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~~ 226 (226)
|+.|+++ .|.+|++++++.||..+..-|..+ ..+||.+++++. .+++.|+.+||+++|..||+.
T Consensus 180 EKk~Kk~~~~t~~e~ve~ai~al~~sl~~Dfk~-se~EVgvv~~~~-p~f~~Ls~~eie~hL~~IAEk 245 (246)
T KOG0182|consen 180 EKKYKKDIDLTFEETVETAISALQSSLGIDFKS-SELEVGVVTVDN-PEFRILSAEEIEEHLQAIAEK 245 (246)
T ss_pred HHhhccCccchHHHHHHHHHHHHHHHHhcccCC-cceEEEEEEcCC-cceeeccHHHHHHHHHHhhhc
Confidence 9999987 679999999999999999888754 889999999988 778999999999999999974
No 40
>KOG0177|consensus
Probab=100.00 E-value=1.4e-36 Score=234.98 Aligned_cols=186 Identities=19% Similarity=0.292 Sum_probs=179.0
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
.+++||++.|+|++|+|+..+++.++..++.+|++.|+++++|+++|..+|+..+.+++.+.++.|+ +++|.+++|
T Consensus 2 e~llGIkg~dfvilAsDt~~~~si~~~k~~~dK~~~ls~~~lm~~~Ge~GDt~qF~eyi~~Ni~LYk----irnGyeLSp 77 (200)
T KOG0177|consen 2 ETLLGIKGPDFVILASDTSAARSILVLKDDHDKIHRLSDHILMATVGEAGDTVQFTEYIQKNIQLYK----IRNGYELSP 77 (200)
T ss_pred ceEEEeecCCEEEEeecchhhcceEEecccccceEEeccceeeeeecCCCceehHHHHHHhhhhHHh----hhcCCcCCH
Confidence 4789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhc---cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684 98 YRAANLFQKIFRSN---EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECI 174 (226)
Q Consensus 98 ~~~a~~l~~~~~~~---~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai 174 (226)
..+|++.++.+..+ |+||.|++|+||+|+..||.||++|..|+..+.++++.|.|+.+..++|++.|+|+||.+||+
T Consensus 78 ~~aahFtR~~La~~LRsr~~yqV~~LvaGYd~~~gp~L~~iDyla~~~~vpy~~hGy~~~f~~sIlDr~Y~pdmt~eea~ 157 (200)
T KOG0177|consen 78 SAAAHFTRRELAESLRSRTPYQVNILVAGYDPEEGPELYYIDYLATLVSVPYAAHGYGSYFCLSILDRYYKPDMTIEEAL 157 (200)
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEeccCCCCCCceeeehhhhhcccCCcccccchhhhhHHHHHhhhCCCCCHHHHH
Confidence 99999999988876 459999999999999889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEE
Q psy8684 175 DFIKMGLSLAMARDYASGGLINIGVLENGKPMEK 208 (226)
Q Consensus 175 ~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~ 208 (226)
++..+|+.++.+|-...-.++.+.+|+||| +++
T Consensus 158 ~lmkKCv~El~kRlvin~~~f~v~IVdkdG-ir~ 190 (200)
T KOG0177|consen 158 DLMKKCVLELKKRLVINLPGFIVKIVDKDG-IRK 190 (200)
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEcCCC-cee
Confidence 999999999999988878899999999999 754
No 41
>KOG0180|consensus
Probab=100.00 E-value=4.2e-35 Score=223.59 Aligned_cols=194 Identities=19% Similarity=0.253 Sum_probs=185.3
Q ss_pred ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE 93 (226)
Q Consensus 14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (226)
..+|+++||+++++||.||+|.|........+.+.+|||++.++++++.+|++.|.+.+.++++...+.|+ ++.++
T Consensus 5 synGg~vvAM~gk~cvaIa~D~RlG~q~~tistdf~ki~~igdr~y~GL~glatDvqtl~~~~~fr~nLy~----lre~R 80 (204)
T KOG0180|consen 5 SYNGGSVVAMAGKNCVAIASDLRLGVQSQTISTDFQKIFKIGDRLYLGLTGLATDVQTLLERLRFRKNLYE----LREER 80 (204)
T ss_pred eecCceEEEEeCCceEEEEeccccceeeeeeeccchhheecCCeeEEeccccchhHHHHHHHHHHHHhHHH----hhhhc
Confidence 35899999999999999999999988788889999999999999999999999999999999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCHH
Q psy8684 94 PPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKKQ 171 (226)
Q Consensus 94 ~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~ 171 (226)
.|.|+.++++++.++|+.|. ||.+..++||.|++++|+|...|..|... ..+|+++|.+++..++++|+.|+|+|..+
T Consensus 81 ~i~P~~~s~mvS~~lYekRfgpYf~~PvVAGl~~~~kPfIc~mD~IGc~~~~~DFVvsGTa~e~L~GmCE~ly~pnmepd 160 (204)
T KOG0180|consen 81 EIKPETFSSMVSSLLYEKRFGPYFTEPVVAGLDDDNKPFICGMDLIGCIDAPKDFVVSGTASEQLYGMCEALYEPNMEPD 160 (204)
T ss_pred ccCcHHHHHHHHHHHHHhhcCCcccceeEeccCCCCCeeEeecccccCcCccCCeEEecchHHHHHHHHHHhcCCCCCHH
Confidence 99999999999999999886 99999999999998999999999999886 68999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684 172 ECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT 212 (226)
Q Consensus 172 eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~ 212 (226)
+.++.+..+|..+.+||..+|+...+.+|+||. +++|.++
T Consensus 161 ~LFetisQa~Lna~DRDalSGwGa~vyiI~kdk-v~~r~lK 200 (204)
T KOG0180|consen 161 ELFETISQALLNAVDRDALSGWGAVVYIITKDK-VTKRTLK 200 (204)
T ss_pred HHHHHHHHHHHhHhhhhhhccCCeEEEEEccch-hhhhhhh
Confidence 999999999999999999999999999999998 8776654
No 42
>KOG0863|consensus
Probab=100.00 E-value=7.1e-35 Score=231.72 Aligned_cols=203 Identities=19% Similarity=0.272 Sum_probs=185.0
Q ss_pred CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684 8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG 87 (226)
Q Consensus 8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 87 (226)
|+ .+|+++|++.||++.++-.||++-+|..+ .+ ++.++||++|++|++++++|+++|.+.|.++++.+|..++
T Consensus 24 ya-~EavkqGsatVGLks~thaVLvAl~r~~s-eL--ss~QkKi~~iD~h~g~siAGLt~Darvl~~Ylr~ec~~~~--- 96 (264)
T KOG0863|consen 24 YA-MEAVKQGSATVGLKSRTHAVLVALKRAQS-EL--SSHQKKIFKIDDHIGISIAGLTADARVLSRYLRQECLNSR--- 96 (264)
T ss_pred HH-HHHHhcccceEeecccceEEEeeeccchh-HH--HHhhheeEecccccceEEeccCcchHHHHHHHHHHHhhhh---
Confidence 45 78999999999999999999999888776 33 6789999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684 88 YREMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK 162 (226)
Q Consensus 88 ~~~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~ 162 (226)
+.+++++|+..+...+.+.+|.. ||||||.++++|||+ .||+||.++|+|++.++...+||+.++.++.+||+
T Consensus 97 -~~~~r~~pv~rl~~~l~~k~q~~Tq~ygrRpYGVGllv~gYDe-~G~hl~e~~Psg~v~e~~g~sIGsRSQsARTyLEr 174 (264)
T KOG0863|consen 97 -FIYGRPLPVLRLVEDLGDKAQENTQRYGRRPYGVGLLVAGYDE-SGPHLYEFCPSGNVFECKGMSIGSRSQSARTYLER 174 (264)
T ss_pred -hccCCcccHHHHHHHHHHHHhhhhhhhCCccccceEEEEeecC-CCceeEEEcCCccEEEEeeeecccchhhHHHHHHH
Confidence 99999999999999998877743 679999999999998 79999999999999999999999999999999999
Q ss_pred hhc--CCCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684 163 EWR--ANMKKQECIDFIKMGLSLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221 (226)
Q Consensus 163 ~~~--~~~s~~eai~la~~~l~~~~~~d-~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~ 221 (226)
+.. .+++.+|.|..+++||+.+...| ..++.+++|+|+.||.+ +..+..+++.+++.
T Consensus 175 ~~e~f~~~~~eELI~~gi~Alr~tlp~de~lt~~nvsI~Ivgkd~p--f~~~d~~~~~k~~~ 234 (264)
T KOG0863|consen 175 NLEEFEDSSPEELIKHGIMALRETLPEDEDLTGENVSIAIVGKDEP--FTILDQKDVAKYVD 234 (264)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhcCcccccccceeEEEEEeCCCc--eEeecHHHHHHHHH
Confidence 875 68999999999999999999644 57889999999999974 56899999887653
No 43
>PRK05456 ATP-dependent protease subunit HslV; Provisional
Probab=100.00 E-value=5.5e-34 Score=225.39 Aligned_cols=166 Identities=18% Similarity=0.242 Sum_probs=149.0
Q ss_pred CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCC
Q psy8684 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPP 95 (226)
Q Consensus 17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~ 95 (226)
|||+|||+++||||||+|+|.+.|.++.+++.+||++| +++++|++||..+|++.|.++++.+++.|+ ...
T Consensus 1 gtTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~KI~~i~~d~i~~~~aG~~aD~q~l~~~l~~~~~~y~----~~~---- 72 (172)
T PRK05456 1 GTTILAVRRNGKVAIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEHQ----GNL---- 72 (172)
T ss_pred CcEEEEEEECCEEEEEECCceEeCcEEEcCCCceEEEeCCCCEEEEEeccHHHHHHHHHHHHHHHHHcc----Ccc----
Confidence 79999999999999999999999999999999999999 999999999999999999999999999987 422
Q ss_pred CHHHHHHHHHHHH-HhccCCceeEEEEEEEeCCCCeEEEEECCCCceeee--eeEEecCChHHHHHHHhhhhc-CCCCHH
Q psy8684 96 LVYRAANLFQKIF-RSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEWR-ANMKKQ 171 (226)
Q Consensus 96 ~~~~~a~~l~~~~-~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~~-~~~s~~ 171 (226)
++.+++.++.+. +.+++|+.+++|+ +|. |+||.+|+.|+..+. ++.++|||+.+++++|++.|+ ++|
T Consensus 73 -~~~~a~l~~~l~~~~~~~~l~~~~lv--~d~---~~ly~id~~G~~~~~~~~~~a~GSGs~~a~g~ld~~y~~~~m--- 143 (172)
T PRK05456 73 -LRAAVELAKDWRTDRYLRRLEAMLIV--ADK---EHSLIISGNGDVIEPEDGIIAIGSGGNYALAAARALLENTDL--- 143 (172)
T ss_pred -HHHHHHHHHHHHhccCCCccEEEEEE--EcC---CcEEEECCCCcEeccCCCeEEEecCHHHHHHHHHHhhhcCCC---
Confidence 466677776553 3445688899999 344 699999999999665 899999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy8684 172 ECIDFIKMGLSLAMARDYASGGLINIGV 199 (226)
Q Consensus 172 eai~la~~~l~~~~~~d~~~~~~i~i~v 199 (226)
||++++++|++.|.+||..+++++++-.
T Consensus 144 eA~~la~kai~~A~~Rd~~sg~~i~v~~ 171 (172)
T PRK05456 144 SAEEIAEKALKIAADICIYTNHNITIEE 171 (172)
T ss_pred CHHHHHHHHHHHHHHhCeeCCCcEEEEE
Confidence 9999999999999999999999988754
No 44
>cd01913 protease_HslV Protease HslV and the ATPase/chaperone HslU are part of an ATP-dependent proteolytic system that is the prokaryotic homolog of the proteasome. HslV is a dimer of hexamers (a dodecamer) that forms a central proteolytic chamber with active sites on the interior walls of the cavity. HslV shares significant sequence and structural similarity with the proteasomal beta-subunit and both are members of the Ntn-family of hydrolases. HslV has a nucleophilic threonine residue at its N-terminus that is exposed after processing of the propeptide and is directly involved in active site catalysis.
Probab=100.00 E-value=2.6e-33 Score=220.14 Aligned_cols=165 Identities=18% Similarity=0.218 Sum_probs=143.6
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecC-eeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISD-NIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
||+|||+++||||||+|+|.+.|.++.+++.+||++|++ |++|++||..+|++.|.++++.+++.|+ .+.++
T Consensus 1 tTivgi~~~dgVvlaaD~r~t~G~~v~~~~~~Ki~~i~d~~i~~~~aG~~aD~~~l~~~~~~~~~~y~----~~~~~--- 73 (171)
T cd01913 1 TTILAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVIAGFAGSTADAFTLFERFEAKLEQYP----GNLLR--- 73 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeccEEEcCCcceEEEeCCCCEEEEecccHHHHHHHHHHHHHHHHHhh----chHHH---
Confidence 689999999999999999999999999999999999998 9999999999999999999999999999 77663
Q ss_pred HHHHHHHHHHHH-HhccCCceeEEEEEEEeCCCCeEEEEECCCCceeee--eeEEecCChHHHHHHHhhhhcCC-CCHHH
Q psy8684 97 VYRAANLFQKIF-RSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEWRAN-MKKQE 172 (226)
Q Consensus 97 ~~~~a~~l~~~~-~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~~~~-~s~~e 172 (226)
.+++.+..++ ++++..+.+.++++++ ++||.+||.|...+. ++.++|||+.+++++|+..|+++ |+
T Consensus 74 --~aa~l~~~l~~~~~~~~l~a~~iv~~~-----~~ly~id~~G~~ie~~~~~~a~GSGS~ya~g~ld~~yk~~~ms--- 143 (171)
T cd01913 74 --AAVELAKDWRTDRYLRRLEAMLIVADK-----EHTLLISGNGDVIEPDDGIAAIGSGGNYALAAARALLDHTDLS--- 143 (171)
T ss_pred --HHHHHHHHHHhccCcCceEEEEEEeCC-----CcEEEECCCCCEeccCCCeEEEeCCHHHHHHHHHHhhccCCCC---
Confidence 4556655553 3333334465665433 389999999999987 59999999999999999999995 99
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy8684 173 CIDFIKMGLSLAMARDYASGGLINIGV 199 (226)
Q Consensus 173 ai~la~~~l~~~~~~d~~~~~~i~i~v 199 (226)
+.++|.+|++.|.+||..+|++|++-.
T Consensus 144 ~~~la~~Av~~A~~rd~~tg~~i~~~~ 170 (171)
T cd01913 144 AEEIARKALKIAADICIYTNHNITVEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCcccCCCEEEEe
Confidence 559999999999999999999998754
No 45
>TIGR03692 ATP_dep_HslV ATP-dependent protease HslVU, peptidase subunit. The ATP-dependent protease HslVU, a complex of hexameric HslU active as a protein-unfolding ATPase and dodecameric HslV, the catalytic threonine protease.
Probab=100.00 E-value=9.6e-33 Score=216.95 Aligned_cols=165 Identities=18% Similarity=0.228 Sum_probs=143.9
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
||+|||+++||||||+|+|.+.|.++.+++.+||++| ++|++|++||..+|++.|.++++.+++.|+ ...
T Consensus 1 tTivgi~~~dgVvlaaD~r~s~g~~v~~~~~~Ki~~i~~d~i~~~~aG~~aD~q~l~~~~~~~~~~y~----~~~----- 71 (171)
T TIGR03692 1 TTILAVRRNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEEYQ----GNL----- 71 (171)
T ss_pred CeEEEEEECCEEEEEECCceEeceEEEcCCCCeEEEeCCCCEEEEecchHHHHHHHHHHHHHHHHHcc----Cch-----
Confidence 6899999999999999999999999999999999999 599999999999999999999999999998 532
Q ss_pred HHHHHHHHHHH-HHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeee--eeEEecCChHHHHHHHhhhh-cCCCCHHH
Q psy8684 97 VYRAANLFQKI-FRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEW-RANMKKQE 172 (226)
Q Consensus 97 ~~~~a~~l~~~-~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~-~~~~s~~e 172 (226)
.+.+++.++++ .+.+++.+.+.++++|| ++||.+||.|...+. ++.++|||+.+++++|+..| +++|+
T Consensus 72 ~~~~a~l~~~~~~~~~~~~l~a~~iv~~~-----~~ly~i~~~G~~ie~~~~~~a~GSGS~~a~g~ld~~y~~~~~s--- 143 (171)
T TIGR03692 72 TRAAVELAKDWRTDRYLRRLEAMLIVADK-----ETSLLISGTGDVIEPEDGIAAIGSGGNYALAAARALLRNTDLS--- 143 (171)
T ss_pred HHHHHHHHHHHhhcccccccEEEEEEEcC-----CCEEEEcCCCcEeccCCCeEEEeCCHHHHHHHHHHhhhcCCCC---
Confidence 46777877774 23333334466666533 389999999999985 69999999999999999999 46777
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEE
Q psy8684 173 CIDFIKMGLSLAMARDYASGGLINIGV 199 (226)
Q Consensus 173 ai~la~~~l~~~~~~d~~~~~~i~i~v 199 (226)
|++++.++++.|.+||..+|++|++-.
T Consensus 144 a~~la~~Av~~A~~rd~~sg~~i~v~~ 170 (171)
T TIGR03692 144 AEEIAREALKIAADICIYTNHNITIEE 170 (171)
T ss_pred HHHHHHHHHHHHHhhCccCCCCEEEEe
Confidence 999999999999999999999998764
No 46
>KOG0185|consensus
Probab=100.00 E-value=2.3e-32 Score=218.00 Aligned_cols=204 Identities=17% Similarity=0.263 Sum_probs=186.5
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
..++..||+|||++++|||+||+|+..++|++...++.+++++|++|+++++||..+|++.+.+.+.+...+..- +.
T Consensus 35 ~~p~vTGTSVla~ky~~GVviaaD~lgSYGslaR~~nVeRi~kVgdntllG~sGdisD~Q~i~r~L~~l~iedn~---~~ 111 (256)
T KOG0185|consen 35 LNPIVTGTSVLALKYKDGVVIAADTLGSYGSLARYKNVERIFKVGDNTLLGASGDISDFQYIQRVLEQLVIEDNR---LD 111 (256)
T ss_pred cCceeccceEEEEEecCceEEEecccccchhhhhhcCceeeEEecCceEEecCccHHHHHHHHHHHHHHHhcccc---cc
Confidence 567889999999999999999999999999999999999999999999999999999999999999988766431 56
Q ss_pred cCCCCCHHHHHHHHHHHHHhccC---CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc--
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNEG---SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-- 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~~---p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~-- 165 (226)
.|+.+.|+.+++++.+++|+.|. |+...+++||+|+.+.|+|-.+|-.|..++.+++|+|.|...+.++|++.|+
T Consensus 112 Dg~~l~Pk~ih~yltrvlY~rRsKmnPlwntlvVgGv~~~g~~~lg~V~~~G~~Y~~~~vATGfg~hLa~P~lR~~~~~k 191 (256)
T KOG0185|consen 112 DGQSLGPKAIHSYLTRVLYARRSKMNPLWNTLVVGGVDNTGEPFLGYVDLLGVAYESPVVATGFGAHLALPLLRDEWEKK 191 (256)
T ss_pred cccccChHHHHHHHHHHHHHhhhccCchhhheeEeeecCCCCeeEEEEeeccccccCchhhhhhHHHhhhHHHHHhhhcc
Confidence 67899999999999999998764 9999999999999888999999999999999999999999999999999997
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684 166 -ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220 (226)
Q Consensus 166 -~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~ 220 (226)
++.+.+||..++.+||+....||+.+...+++.+|+++| +.+ -.|..|+..|
T Consensus 192 ~~~~s~eeA~~li~~cMrVL~YRD~ra~n~fqva~v~~eG-v~i--~~p~qv~~~W 244 (256)
T KOG0185|consen 192 GEDLSREEAEALIEKCMRVLYYRDARASNEFQVATVDEEG-VTI--SKPYQVKTNW 244 (256)
T ss_pred chhhHHHHHHHHHHHHHHHHhccccccccceEEEEEcccc-eEe--cCceeeeecc
Confidence 468999999999999999999999999999999999999 653 3555565554
No 47
>cd01901 Ntn_hydrolase The Ntn hydrolases (N-terminal nucleophile) are a diverse superfamily of of enzymes that are activated autocatalytically via an N-terminally lcated nucleophilic amino acid. N-terminal nucleophile (NTN-) hydrolase superfamily, which contains a four-layered alpha, beta, beta, alpha core structure. This family of hydrolases includes penicillin acylase, the 20S proteasome alpha and beta subunits, and glutamate synthase. The mechanism of activation of these proteins is conserved, although they differ in their substrate specificities. All known members catalyze the hydrolysis of amide bonds in either proteins or small molecules, and each one of them is synthesized as a preprotein. For each, an autocatalytic endoproteolytic process generates a new N-terminal residue. This mature N-terminal residue is central to catalysis and acts as both a polarizing base and a nucleophile during the reaction. The N-terminal amino group acts as the proton acceptor and activates either t
Probab=99.97 E-value=8e-29 Score=192.85 Aligned_cols=160 Identities=26% Similarity=0.362 Sum_probs=153.3
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+|+||++++|||++|+|++.+.+.........|++.++++++++++|..+|++.+.++++.+++.|+ ++++.++++
T Consensus 1 ~t~i~i~~~~gvila~d~~~~~~~~~~~~~~~ki~~~~~~~~~~~sG~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~ 76 (164)
T cd01901 1 STSVAIKGKGGVVLAADKRLSSGLPVAGSPVIKIGKNEDGIAWGLAGLAADAQTLVRRLREALQLYR----LRYGEPISV 76 (164)
T ss_pred CcEEEEEeCCEEEEEEecccCccCeecCCCcceEEEecCCeEEEEecChHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence 5899999999999999999999877767889999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhcc--CCceeEEEEEEEeCCCCeEEEEECCCCceeee-eeEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684 98 YRAANLFQKIFRSNE--GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQ-NCAVGGSGSSYILGYVDKEWRANMKKQECI 174 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~--~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~-~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai 174 (226)
..+++.+++.++.++ +|+++++|+||+|+ ++|+||.+||.|.+.+. .++++|+++..+.++|++.|+++++.+|++
T Consensus 77 ~~~~~~~~~~~~~~~~~~p~~~~~iiag~~~-~~~~l~~id~~g~~~~~~~~~~~G~~~~~~~~~l~~~~~~~~~~~~~~ 155 (164)
T cd01901 77 VALAKELAKLLQVYTQGRPFGVNLIVAGVDE-GGGNLYYIDPSGPVIENPGAVATGSRSQRAKSLLEKLYKPDMTLEEAV 155 (164)
T ss_pred HHHHHHHHHHHHHhcCCCCcceEEEEEEEcC-CCCEEEEECCCcCEeecCcEEEECCCCHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999886 79999999999998 88999999999999998 999999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy8684 175 DFIKMGLS 182 (226)
Q Consensus 175 ~la~~~l~ 182 (226)
+++.++|.
T Consensus 156 ~~~~~~l~ 163 (164)
T cd01901 156 ELALKALK 163 (164)
T ss_pred HHHHHHHh
Confidence 99999985
No 48
>COG5405 HslV ATP-dependent protease HslVU (ClpYQ), peptidase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=6.6e-15 Score=112.10 Aligned_cols=170 Identities=16% Similarity=0.202 Sum_probs=129.2
Q ss_pred cCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecC-eeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684 15 TCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISD-NIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE 93 (226)
Q Consensus 15 ~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~-~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (226)
.++||+++++.++-++||.|.++|.|+.++..+..|+.+|.. +++.+++|.++|+..|.+++..++++|. |.
T Consensus 2 ~h~TTiv~vr~~gkv~iagDGQVtlG~tvmK~narKvRkl~~gkvlaGFAGstADaftLfe~fe~kle~~~-------g~ 74 (178)
T COG5405 2 FHMTTIVAVRKNGKVVIAGDGQVTLGNTVMKGNARKVRRLYNGKVLAGFAGSTADAFTLFERFEAKLEQYQ-------GD 74 (178)
T ss_pred ceeEEEEEEeeCCeEEEecCceEeecceeeeccHHHHHHHcCCcEEEEecccchhHHHHHHHHHHHHHHcc-------Cc
Confidence 368999999999999999999999999999999999999964 7999999999999999999999999887 33
Q ss_pred CC-CHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCcee--eeeeEEecCChHHHHHHHhhhhc-CCCC
Q psy8684 94 PP-LVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLT--RQNCAVGGSGSSYILGYVDKEWR-ANMK 169 (226)
Q Consensus 94 ~~-~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~--~~~~~a~Gsg~~~~~~~Le~~~~-~~~s 169 (226)
-. .+-++++..+. .++.+...+-+++ .|+ -.+|-+...|... +.+.+|||||..++++.....++ ++++
T Consensus 75 L~raavelaKdwr~--Dk~lr~LEAmllV--ad~---~~il~isG~gdV~epe~~~~aIGSGgnyAl~AarAl~~~~~ls 147 (178)
T COG5405 75 LFRAAVELAKDWRT--DKYLRKLEAMLLV--ADK---THILIITGNGDVIEPEDDIIAIGSGGNYALSAARALMENTELS 147 (178)
T ss_pred HHHHHHHHHHhhhh--hhHHHHHhhheeE--eCC---CcEEEEecCcceecCCCCeEEEcCCchHHHHHHHHHHhccCCC
Confidence 21 11123332221 0112234444455 454 2467777777665 35699999999999999998875 4666
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684 170 KQECIDFIKMGLSLAMARDYASGGLINIGVLE 201 (226)
Q Consensus 170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~ 201 (226)
|.+++.++|..+.+-+..++.++.+-.+.
T Consensus 148 ---A~eIa~~sl~iA~eiciyTN~ni~ve~l~ 176 (178)
T COG5405 148 ---AREIAEKSLKIAGDICIYTNHNIVVEELR 176 (178)
T ss_pred ---HHHHHHHHHhhhheEEEecCCcEEEEEee
Confidence 77889999999988777777777766554
No 49
>COG3484 Predicted proteasome-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.1e-12 Score=101.04 Aligned_cols=181 Identities=19% Similarity=0.276 Sum_probs=142.6
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeec---Ce-eEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC-
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKIS---DN-IYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN- 92 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~---~~-i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~- 92 (226)
|-|||++-+.|.|+++|+|...| +--....+|+|.-. ++ ++++.+|.-+-.|.+++.+.+..+... -..-
T Consensus 2 TYCv~l~l~~GlVf~sDsRTNAG-vD~istfkKl~~~~~pGdRvlvl~taGNLA~tQaV~~ll~e~~~~d~----~~~L~ 76 (255)
T COG3484 2 TYCVGLILDFGLVFGSDSRTNAG-VDYISTFKKLFVFELPGDRVLVLCTAGNLAITQAVLHLLDERIQRDD----GDSLL 76 (255)
T ss_pred ceEEEEEeccceEEecccccccC-chHHHHHHHHhhccCCCceEEEEEecCccHHHHHHHHHHHHHhhccc----hhhhh
Confidence 67999999999999999998875 22234456766552 33 677899999999999999988776333 1111
Q ss_pred CCCCHHHHHHHHHHHHHh---ccC--------CceeEEEEEEEeCCCCeEEEEECCCCceee----eeeEEecCChHHHH
Q psy8684 93 EPPLVYRAANLFQKIFRS---NEG--------SFKAAIIIAGWDTVKGGQVYALPASGVLTR----QNCAVGGSGSSYIL 157 (226)
Q Consensus 93 ~~~~~~~~a~~l~~~~~~---~~~--------p~~v~~liaG~d~~~~p~ly~id~~G~~~~----~~~~a~Gsg~~~~~ 157 (226)
.-.+.-+.+..+.....+ .-+ -|.|++|++|.-..+-|.||.+.|.|++.+ .+|.-+| -+.+..
T Consensus 77 n~~sm~eattlvgetvrEv~~rds~~leka~~dfn~sfllGGQI~G~pp~Ly~IYpqGNFIqaT~etpf~QiG-EtKYGK 155 (255)
T COG3484 77 NIPSMYEATTLVGETVREVQARDSPALEKAGIDFNCSFLLGGQIKGEPPRLYLIYPQGNFIQATPETPFLQIG-ETKYGK 155 (255)
T ss_pred cchhHHHHHHHHHHHHHHHHhccCchhhccCcceeEEEEEcceecCCCceeEEEccCCCeeecCCCCceeEcc-ccccCc
Confidence 112344555555544432 111 499999999998755689999999999864 7899999 667899
Q ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 158 GYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 158 ~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
++|++.+..+++++|+.++++-.+....+.+...|-++++.++.+|.
T Consensus 156 PildR~i~~~~pLeea~kcaLvS~DSTlkSNiSVGlPldLl~~e~ds 202 (255)
T COG3484 156 PILDRTITYDTPLEEAAKCALVSFDSTLKSNISVGLPLDLLVYEADS 202 (255)
T ss_pred hhhhhhhhccCCHHHHhhheEEecchhhhccccccCCceeEEEeccc
Confidence 99999999999999999999999999999999999999999999986
No 50
>PF09894 DUF2121: Uncharacterized protein conserved in archaea (DUF2121); InterPro: IPR016754 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. They do show distant similarity to NTPases and to nucleic acid binding enzymes.
Probab=97.37 E-value=0.033 Score=44.49 Aligned_cols=150 Identities=13% Similarity=0.122 Sum_probs=94.8
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
+.+||..+++|.|||.|+|. +++-|.-.....|-+. +..|.--+=
T Consensus 2 SLII~y~GknGaViaGDkR~----------------------I~F~G~~~~re~LEee-------------LYsG~Iktd 46 (194)
T PF09894_consen 2 SLIIAYYGKNGAVIAGDKRN----------------------IAFRGDEEKREKLEEE-------------LYSGKIKTD 46 (194)
T ss_pred eEEEEEecCCCcEEecccee----------------------eeecCCHHHHHHHHHH-------------HhCCccCCH
Confidence 67899999999999999971 3567777777666554 333554455
Q ss_pred HHHHHHHHHHH---H--hcc-CCceeEEEEEE-------EeCCCCeEEEEE-------CCCCceeee-------eeEEec
Q psy8684 98 YRAANLFQKIF---R--SNE-GSFKAAIIIAG-------WDTVKGGQVYAL-------PASGVLTRQ-------NCAVGG 150 (226)
Q Consensus 98 ~~~a~~l~~~~---~--~~~-~p~~v~~liaG-------~d~~~~p~ly~i-------d~~G~~~~~-------~~~a~G 150 (226)
++|......+= + ..+ .-+-..-++.| .+. ..-++|.+ |-.|.-... ..+..|
T Consensus 47 eEL~kkA~Elgv~i~I~D~r~KV~~~~~vlvGEV~s~~g~~s-kRRRiY~t~g~~~Ivei~~~~i~~~~~g~~sgiIVfG 125 (194)
T PF09894_consen 47 EELLKKAEELGVKIKITDDREKVRKIGDVLVGEVTSISGKDS-KRRRIYATKGKYAIVEIENDEITNKSRGEGSGIIVFG 125 (194)
T ss_pred HHHHHHHHHcCCEEEEecCchheEEeCCEEEEEEEEEcCccc-eeeEEEecCCCEEEEEecCCeEEEEecCCceeEEEEC
Confidence 55555555321 1 111 12222223333 232 23456653 333322211 133333
Q ss_pred CC--hHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC
Q psy8684 151 SG--SSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG 203 (226)
Q Consensus 151 sg--~~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~ 203 (226)
.. -+.+...|.+.|++.|+++++..+..++|..+.+..+..+..+++...++.
T Consensus 126 Nk~~K~ia~~~lkk~~~~k~~l~~i~~i~~~i~~~~a~~tpsvS~~~d~~~~~~~ 180 (194)
T PF09894_consen 126 NKFTKEIANKELKKYWKPKMSLKDIENIFEKIMEEVASKTPSVSKEYDIYITTKK 180 (194)
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcCCCccCcEEEEEeccc
Confidence 22 166777788999999999999999999999998877777888998877764
No 51
>COG4079 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.52 E-value=0.11 Score=43.01 Aligned_cols=168 Identities=14% Similarity=0.130 Sum_probs=105.0
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
|.+|+..+++|.|+|.|.|. +.+-|.-.|...|-+. +..|.--+-
T Consensus 2 tLviay~gknGaviaGDrR~----------------------i~frgdee~re~lEek-------------LYsGeIkte 46 (293)
T COG4079 2 TLVIAYIGKNGAVIAGDRRE----------------------ITFRGDEEDREKLEEK-------------LYSGEIKTE 46 (293)
T ss_pred eEEEEEecCCCcEEeccceE----------------------EEEecChhHHHHHHHH-------------hhcCccccH
Confidence 67899999999999999862 2455777777666654 344665666
Q ss_pred HHHHHHHHHHHHhc-----c---CCceeEEEEEEEeCC-----CCeEEEEE-------CCCCce--e-e----eeeEEec
Q psy8684 98 YRAANLFQKIFRSN-----E---GSFKAAIIIAGWDTV-----KGGQVYAL-------PASGVL--T-R----QNCAVGG 150 (226)
Q Consensus 98 ~~~a~~l~~~~~~~-----~---~p~~v~~liaG~d~~-----~~p~ly~i-------d~~G~~--~-~----~~~~a~G 150 (226)
+++++.+..+--+. | +..+-+++++-+... ..-++|.+ +-.|+- + . ..+.+.|
T Consensus 47 EEL~r~aeel~Vki~vtDdr~KVrk~~d~VvvGEV~s~~~~~vkRRRvYAT~Ga~aIvel~gs~vts~~~g~g~aiIv~G 126 (293)
T COG4079 47 EELARKAEELGVKITVTDDRNKVRKRNDGVVVGEVSSVERGIVKRRRVYATAGAYAIVELRGSEVTSTSQGKGSAIIVFG 126 (293)
T ss_pred HHHHHHHHHcCCEEEEEcchHhhhcccCcEEEEEeecccccceeeeEEeecCCceEEEEecCCeeEeeecCCCceEEEEC
Confidence 77777776532111 1 123233444433321 11244443 112211 0 0 2234444
Q ss_pred CC--hHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684 151 SG--SSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221 (226)
Q Consensus 151 sg--~~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~ 221 (226)
.. -+.+..+|.+.|.+.++++++.++..++|..+...-+..+...++..+.+.-.. +..|-.+||+.++.
T Consensus 127 nk~~Ke~aneflk~~l~~k~~lqd~~dal~elfe~vss~tpsVskeydiy~vs~~~d~-~~rl~kkDie~L~k 198 (293)
T COG4079 127 NKFTKEVANEFLKDNLTKKSKLQDAVDALMELFETVSSKTPSVSKEYDIYQVSSNVDP-VLRLVKKDIETLRK 198 (293)
T ss_pred cHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhcCCCcccceeEEEEecCCcCH-HHHHHHHHHHHHHH
Confidence 22 255677788999999999999999999999999777777788999988875311 23355577766654
No 52
>KOG3361|consensus
Probab=85.72 E-value=1.7 Score=32.66 Aligned_cols=43 Identities=21% Similarity=0.342 Sum_probs=39.5
Q ss_pred EECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 134 ~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
.+|.+|.....+|-..|-|+..+-+-+-..|-+++++||+..+
T Consensus 72 kvd~~g~I~dakFKTFGCGSAIASSS~aTewvkgkt~dea~kI 114 (157)
T KOG3361|consen 72 KVDDSGVIEDAKFKTFGCGSAIASSSLATEWVKGKTLDEALKI 114 (157)
T ss_pred EECCCCcEEEeeeeecccchHhhhhHHHHHHHccccHHHHHhc
Confidence 5688999999999999999999999999999999999999764
No 53
>PRK09732 hypothetical protein; Provisional
Probab=50.99 E-value=47 Score=25.11 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
+.+|++.|.+++..++..+.+. +.++.|.|++..|
T Consensus 5 ~~Ltl~~A~~~~~aA~~~A~~~----g~~v~iaVvD~~G 39 (134)
T PRK09732 5 VILSQQMASAIIAAGQEEAQKN----NWSVSIAVADDGG 39 (134)
T ss_pred ccCCHHHHHHHHHHHHHHHHHh----CCCEEEEEEcCCC
Confidence 4589999999999999999875 5689999999988
No 54
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=50.06 E-value=36 Score=24.98 Aligned_cols=34 Identities=6% Similarity=0.047 Sum_probs=25.2
Q ss_pred CCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 192 GGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 192 ~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
.+.+.+..|.|||+++.+.-.|-++++++..|..
T Consensus 77 ~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 77 PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 4669999999999887775556666777666654
No 55
>PF03928 DUF336: Domain of unknown function (DUF336); InterPro: IPR005624 This entry contains uncharacterised proteins, including GlcG P45504 from SWISSPROT. The alignment contains many conserved motifs that are suggestive of cofactor binding and enzymatic activity.; PDB: 2A2L_D 3FPW_A 3FPV_E.
Probab=41.31 E-value=41 Score=25.02 Aligned_cols=37 Identities=16% Similarity=0.283 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM 206 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~ 206 (226)
|.+|+++|.+++..++..+.++ +.++-|.|++..|..
T Consensus 1 p~l~~~~A~~l~~~a~~~a~~~----g~~v~iaVvd~~G~~ 37 (132)
T PF03928_consen 1 PSLTLEDAWKLGDAAVEEARER----GLPVSIAVVDAGGHL 37 (132)
T ss_dssp EEE-HHHHHHHHHHHHHHHHHT----T---EEEEEETTS-E
T ss_pred CCcCHHHHHHHHHHHHHHHHHh----CCCeEEEEEECCCCE
Confidence 3468999999999999999975 346889999998833
No 56
>cd04513 Glycosylasparaginase Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoproteins. This enzyme is an amidase located inside lysosomes. Mutation of this gene in humans causes a genetic disorder known as aspartylglycosaminuria (AGU). The glycosylasparaginase precursor undergoes autoproteolysis through an N-O or N-S acyl rearrangement of the peptide bond, which leads to the cleavage of a peptide bond between an Asp and a Thr. This proteolysis step generates an exposed N-terminal catalytic threonine and activates the enzyme.
Probab=39.54 E-value=1.4e+02 Score=25.38 Aligned_cols=59 Identities=12% Similarity=0.002 Sum_probs=42.3
Q ss_pred eeEEecCChHHHHHHHhhh----hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe
Q psy8684 145 NCAVGGSGSSYILGYVDKE----WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM 206 (226)
Q Consensus 145 ~~~a~Gsg~~~~~~~Le~~----~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~ 206 (226)
-..++|.|..+++..+-.. .+.+++++||.+.+++-+..... ..++..-+..|+++|.+
T Consensus 186 a~s~TG~GE~iir~~~A~~v~~~m~~G~~~~~A~~~~i~~~~~~~~---~~~~~gg~Iavd~~G~~ 248 (263)
T cd04513 186 AAAATGDGEEMMRFLPSFQAVEYMRQGMSPKEACLEAIKRIAKHFD---GPDFEGAVVALNKKGEY 248 (263)
T ss_pred EEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC---cCCCcEEEEEEcCCCCE
Confidence 4679999998888776543 34689999999888777654332 23456678888998844
No 57
>COG3193 GlcG Uncharacterized protein, possibly involved in utilization of glycolate and propanediol [General function prediction only]
Probab=38.79 E-value=96 Score=23.74 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM 206 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~ 206 (226)
+.+|++.|.+++..++..+.+. +.++.+.|++..|..
T Consensus 6 ~~Ls~e~a~~ii~aA~a~a~~~----g~~VtvaVVD~~G~~ 42 (141)
T COG3193 6 PVLSLELANKIIAAAVAEAQQL----GVPVTVAVVDAGGHL 42 (141)
T ss_pred cccCHHHHHHHHHHHHHHHHHh----CCceEEEEECCCCCE
Confidence 5689999999999999998763 689999999998843
No 58
>PF07499 RuvA_C: RuvA, C-terminal domain; InterPro: IPR011114 In prokaryotes, RuvA, RuvB, and RuvC process the universal DNA intermediate of homologous recombination, termed Holliday junction. The tetrameric DNA helicase RuvA specifically binds to the Holliday junction and facilitates the isomerization of the junction from the stacked folded configuration to the square-planar structure []. In the RuvA tetramer, each subunit consists of three domains, I, II and III, where I and II form the major core that is responsible for Holliday junction binding and base pair rearrangements of Holliday junction executed at the crossover point, whereas domain III regulates branch migration through direct contact with RuvB. The domain represents the C-terminal domain III of RuvA. This domain plays a significant role in the ATP-dependent branch migration of the hetero-duplex through direct contact with RuvB []. Within the Holliday junction, this domain makes no interaction with the DNA.; GO: 0005524 ATP binding, 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination, 0009379 Holliday junction helicase complex; PDB: 1HJP_A 1CUK_A 1C7Y_A 1IXS_A 1IXR_B 1BVS_E 2ZTC_A 2ZTD_B 2H5X_A.
Probab=38.32 E-value=26 Score=21.16 Aligned_cols=32 Identities=19% Similarity=0.009 Sum_probs=22.9
Q ss_pred ecCChHHHHHHHhhhh-cCCCCHHHHHHHHHHH
Q psy8684 149 GGSGSSYILGYVDKEW-RANMKKQECIDFIKMG 180 (226)
Q Consensus 149 ~Gsg~~~~~~~Le~~~-~~~~s~~eai~la~~~ 180 (226)
-|.....+..++.+.. .++++.++.+..+++.
T Consensus 13 LGy~~~e~~~av~~~~~~~~~~~e~~ik~aLk~ 45 (47)
T PF07499_consen 13 LGYSKAEAQKAVSKLLEKPGMDVEELIKQALKL 45 (47)
T ss_dssp TTS-HHHHHHHHHHHHHSTTS-HHHHHHHHHCC
T ss_pred cCCCHHHHHHHHHHhhcCCCCCHHHHHHHHHhh
Confidence 4777778888888776 7889988888777653
No 59
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=34.70 E-value=54 Score=25.65 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=21.4
Q ss_pred EEEEcCCCCeEEEE---eChhhHhhHhhcc
Q psy8684 197 IGVLENGKPMEKLV---FTQEEVQHFFNHE 223 (226)
Q Consensus 197 i~vi~~~g~~~~~~---l~~~ei~~~~~~~ 223 (226)
|.+++|+|++.+.. |+++|++.++.=+
T Consensus 128 iiVlDK~G~V~F~k~G~Ls~~Ev~qVi~Ll 157 (160)
T PF09695_consen 128 IIVLDKQGKVQFVKEGALSPAEVQQVIALL 157 (160)
T ss_pred EEEEcCCccEEEEECCCCCHHHHHHHHHHH
Confidence 66889999776654 9999999987643
No 60
>cd04512 Ntn_Asparaginase_2_like Ntn-hydrolase superfamily, L-Asparaginase type 2-like enzymes. This family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.
Probab=34.66 E-value=1.7e+02 Score=24.59 Aligned_cols=57 Identities=14% Similarity=0.174 Sum_probs=40.7
Q ss_pred eeeEEecCChHHHHHHHhhh----hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe
Q psy8684 144 QNCAVGGSGSSYILGYVDKE----WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM 206 (226)
Q Consensus 144 ~~~~a~Gsg~~~~~~~Le~~----~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~ 206 (226)
.-..++|.|..+++..+-.. .+.++++++|.+.+++-|... .+...-+..++++|.+
T Consensus 174 ~a~s~TG~GE~iir~~~a~~v~~~~~~g~~~~~A~~~~i~~~~~~------~~~~~G~Ia~d~~G~~ 234 (248)
T cd04512 174 GAASTTGHGEAIIRTVLARRVVELMEQGMAAQAAAETAVEELGSL------KGGQGGVIAVDSKGEF 234 (248)
T ss_pred EEEEeeecHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhh------cCCeEEEEEEeCCCCE
Confidence 35789999999888776543 356789999988777666543 2344567888888843
No 61
>PF13066 DUF3929: Protein of unknown function (DUF3929)
Probab=31.10 E-value=68 Score=20.22 Aligned_cols=23 Identities=22% Similarity=0.161 Sum_probs=18.3
Q ss_pred ccccCCceEEEEEeCCeEEEEEe
Q psy8684 12 TEVTCGTTTIACEYENGVMMGAD 34 (226)
Q Consensus 12 ~ai~~gttvigi~~~dgVvlaad 34 (226)
.|+.+.+|+|.|.|+|-|-+--|
T Consensus 40 taidkqgtiisiac~divkveld 62 (65)
T PF13066_consen 40 TAIDKQGTIISIACNDIVKVELD 62 (65)
T ss_pred EEeccCCcEEEEEecceeeEEee
Confidence 47888999999999997765443
No 62
>PRK04081 hypothetical protein; Provisional
Probab=30.80 E-value=40 Score=27.29 Aligned_cols=29 Identities=17% Similarity=0.300 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 195 INIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 195 i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
-.+.+=++|| . +|+|++||+++++.+++.
T Consensus 72 Trvilr~~dG-~-ER~LS~eE~dkLi~eE~~ 100 (207)
T PRK04081 72 TRVVLRDLDG-T-ERVLSQEEIDKLIKEEEA 100 (207)
T ss_pred ceEEEecCCC-c-ccccCHHHHHHHHHHHHH
Confidence 3444445677 3 689999999999988753
No 63
>PF11211 DUF2997: Protein of unknown function (DUF2997); InterPro: IPR021375 This family of proteins has no known function.
Probab=29.07 E-value=1.1e+02 Score=18.79 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=26.1
Q ss_pred EEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEW 164 (226)
Q Consensus 133 y~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~ 164 (226)
|.++|+|.....--...|+....+...|++..
T Consensus 3 ~~I~~dG~V~~~v~G~~G~~C~~~t~~lE~~L 34 (48)
T PF11211_consen 3 FTIYPDGRVEEEVEGFKGSSCLEATAALEEAL 34 (48)
T ss_pred EEECCCcEEEEEEEeccChhHHHHHHHHHHHh
Confidence 67899999988777777988888888887654
No 64
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=28.23 E-value=2.5e+02 Score=23.89 Aligned_cols=57 Identities=16% Similarity=0.083 Sum_probs=39.6
Q ss_pred eeeEEecCChHHHHHHHhhh----hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe
Q psy8684 144 QNCAVGGSGSSYILGYVDKE----WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM 206 (226)
Q Consensus 144 ~~~~a~Gsg~~~~~~~Le~~----~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~ 206 (226)
.-.+++|.|..+++..+-.. .+.+++++||.+.+++-+.... ++..-+..++++|.+
T Consensus 177 ga~s~TG~GE~iir~~~a~~v~~~m~~g~s~~eA~~~~i~~~~~~~------~g~gG~Iavd~~G~~ 237 (261)
T cd04702 177 GAVSTTGHGESIMKVVLARLILDHMEQGGSAQEAADKAIEYMTERV------KGTGGAIVLDSSGEV 237 (261)
T ss_pred eEEEeeccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc------CCceEEEEEeCCCCE
Confidence 34789999998888776543 3568899999987776655432 234456678888743
No 65
>COG5469 Predicted metal-binding protein [Function unknown]
Probab=27.83 E-value=16 Score=27.69 Aligned_cols=74 Identities=9% Similarity=-0.053 Sum_probs=42.6
Q ss_pred ceEeecCeeEEEeCCC-----------hHHHHHHHHHHHHHHHhhhhccccccCCCC-CHHHHHHHHHHHHHhccCCcee
Q psy8684 50 KLTKISDNIYCCRSGT-----------AADTQAISDLVSYHIDLDVAYGYREMNEPP-LVYRAANLFQKIFRSNEGSFKA 117 (226)
Q Consensus 50 Ki~~i~~~i~~~~sG~-----------~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~l~~~~~~~~~p~~v 117 (226)
|+-..-+|.++.+.-. ..|...|.+++.+.++... ...+.++ +|+.++..-+...-.++.|-.-
T Consensus 11 ~~~~~~~htlfVCksC~~~~~~~~~~~p~~G~~Ll~kl~~l~qe~~----~~~e~~I~~VeCl~~C~r~c~vA~~~~~k~ 86 (143)
T COG5469 11 KINGMPKHTLFVCKSCRDVSQEGKENGPSDGSILLDKLQELAQEWE----IAHEFEIQTVECLAACNRGCVVAFSGPGKP 86 (143)
T ss_pred hccccCceEEEEeccccccccCCccCCCCcHHHHHHHHHHHHhhhh----hhccceeeeeHhhhhcCCCeEEEEecCCCc
Confidence 4555555555544322 3577888899888888887 6666655 4666554433222223345555
Q ss_pred EEEEEEEeCC
Q psy8684 118 AIIIAGWDTV 127 (226)
Q Consensus 118 ~~liaG~d~~ 127 (226)
+.|++..+++
T Consensus 87 sYLFgdL~p~ 96 (143)
T COG5469 87 SYLFGDLTPD 96 (143)
T ss_pred eEEEccCCcc
Confidence 5566555553
No 66
>COG0822 IscU NifU homolog involved in Fe-S cluster formation [Energy production and conversion]
Probab=27.24 E-value=2.9e+02 Score=21.22 Aligned_cols=56 Identities=14% Similarity=0.096 Sum_probs=44.1
Q ss_pred eEEE-EECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHh
Q psy8684 130 GQVY-ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186 (226)
Q Consensus 130 p~ly-~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~ 186 (226)
-.|| .+| .|......|-..|-+...+-+-+-..+-++.|.+||.++.......+.+
T Consensus 43 i~l~lkv~-~~~I~d~~F~~~GC~is~ASss~~te~v~Gkti~EAl~i~~~~~~m~~~ 99 (150)
T COG0822 43 ITLYLKVD-NGVIEDAKFKGFGCAISIASSSMMTELVKGKTLDEALKITEAFTDMAKE 99 (150)
T ss_pred EEEEEEEc-CCEEEEEEeeecCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 4555 456 8888889999999888888877888888899999999999555555553
No 67
>PRK11325 scaffold protein; Provisional
Probab=27.05 E-value=2.6e+02 Score=20.64 Aligned_cols=54 Identities=13% Similarity=0.228 Sum_probs=40.4
Q ss_pred eEEE-EECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHHHHHHHH
Q psy8684 130 GQVY-ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSL 183 (226)
Q Consensus 130 p~ly-~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la~~~l~~ 183 (226)
-.|| .+|+.|...+..|.+.|-....+-.-+-..+-.+.|++||..+..+.+..
T Consensus 41 i~l~l~v~~~~~I~d~~f~~~GC~is~Asas~~~e~~~Gktl~ea~~i~~~~i~~ 95 (127)
T PRK11325 41 MKLQIKVNDEGIIEDAKFKTYGCGSAIASSSLVTEWVKGKTLDEALAIKNTDIAE 95 (127)
T ss_pred EEEEEEECCCCeEEEEEEEeeCCHHHHHHHHHHHHHHcCCCHHHHHhcCHHHHHH
Confidence 4455 55667888889999999777666666666677889999999988865543
No 68
>cd05295 MDH_like Malate dehydrogenase-like. These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=26.45 E-value=5.2e+02 Score=23.85 Aligned_cols=117 Identities=13% Similarity=0.201 Sum_probs=78.5
Q ss_pred hHHHHHHHHHHHHHHHhhhhccccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEE--ECCCCceee
Q psy8684 66 AADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA--LPASGVLTR 143 (226)
Q Consensus 66 ~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~--id~~G~~~~ 143 (226)
++=+.-|.+++...+..++-| .-.-+|+.--.++.+++.+. ||.....|-+.. +|-.|
T Consensus 7 ya~~ellad~l~~~l~~f~~~-----ki~~~p~~w~~wl~~~c~~~-----------~w~~~~spiiwrel~~rgg---- 66 (452)
T cd05295 7 YAKAELLADYLQKNLPDFRVH-----KIVKHPDEWEDWLQDLCKKN-----------GWSHKRSPIIWRELLDRGG---- 66 (452)
T ss_pred hHHHHHHHHHHHhhCCCceEE-----EccCChHHHHHHHHHHHHhc-----------CCccCCCCeeHHHHHhcCC----
Confidence 345566777777666666522 22345777778888888765 577766787775 67766
Q ss_pred eeeEEecCChHHHHHHHhhhhc--CCCCHHHHHHHHHHHHHHHHhccc------CCCCcEEEEEEcCCC
Q psy8684 144 QNCAVGGSGSSYILGYVDKEWR--ANMKKQECIDFIKMGLSLAMARDY------ASGGLINIGVLENGK 204 (226)
Q Consensus 144 ~~~~a~Gsg~~~~~~~Le~~~~--~~~s~~eai~la~~~l~~~~~~d~------~~~~~i~i~vi~~~g 204 (226)
+..-+| |....+.+.+.+|. ..|+.++...++.+=|....+.+. ....++.|+|-...|
T Consensus 67 -kg~l~g-g~~~f~e~~~~yyg~~s~m~~~~~~~i~~en~~~~~~~~~e~~~~~~~~~p~~V~vtgAag 133 (452)
T cd05295 67 -KGLLLG-GCNEFLEYAESYYGITSSMMSEEMTVIAEENLETHIEVEKEEEELRSKINPLQVCITNASA 133 (452)
T ss_pred -CceEec-ChHHHHHHHHHHhCccccccHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCceEEEEecCcH
Confidence 566678 66667778888875 678999999888888877763221 233568888765544
No 69
>PLN02235 ATP citrate (pro-S)-lyase
Probab=26.28 E-value=4.2e+02 Score=24.24 Aligned_cols=125 Identities=15% Similarity=0.096 Sum_probs=68.5
Q ss_pred EeecCeeEEEeCCChHHHHHHHHHHHH-----HHHhhhhccccccCCCCCHHHHHHHHHHHHH---hccCCceeEE-EEE
Q psy8684 52 TKISDNIYCCRSGTAADTQAISDLVSY-----HIDLDVAYGYREMNEPPLVYRAANLFQKIFR---SNEGSFKAAI-IIA 122 (226)
Q Consensus 52 ~~i~~~i~~~~sG~~~D~~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~---~~~~p~~v~~-lia 122 (226)
..++.+|+|.+.|--. +..-.+.+.. +..+| +++|...+.+.+...+.-++. +..++=++-+ |++
T Consensus 266 v~ldG~Ig~mvnGAGl-amaTmD~I~~~G~~g~pANF-----lDvGG~a~~e~v~~a~~iil~~~~~~~~vk~ilvnIfG 339 (423)
T PLN02235 266 LNPKGRIWTMVAGGGA-SVIYADTVGDLGYASELGNY-----AEYSGAPNEEEVLQYARVVIDCATANPDGRKRALLIGG 339 (423)
T ss_pred eCCCCeEEEEecCcHH-HHHHHHHHHHcCCCCCCcee-----eecCCCCCHHHHHHHHHHHHhhhhcCCCCcEEEEEEec
Confidence 4567899888877532 2222333332 33344 577888888888888876652 3333333322 344
Q ss_pred EEeC---CC---CeEEEEECCCC-----ceeeeeeEEecCChHHHHHHHhh----------hhcCCCCHHHHHHHHHHHH
Q psy8684 123 GWDT---VK---GGQVYALPASG-----VLTRQNCAVGGSGSSYILGYVDK----------EWRANMKKQECIDFIKMGL 181 (226)
Q Consensus 123 G~d~---~~---~p~ly~id~~G-----~~~~~~~~a~Gsg~~~~~~~Le~----------~~~~~~s~~eai~la~~~l 181 (226)
|+-. .. ..-+-.+...+ .-.+.-.--.|.+.+..+.+|+. .|.+++++++|...|.+.+
T Consensus 340 GI~rcd~VA~tf~GIi~A~~e~~~kl~~~~vpivVRl~GtN~eeG~~il~e~~~~~gl~i~~~~~~~~m~~a~~~av~~~ 419 (423)
T PLN02235 340 GIANFTDVAATFNGIIRALREKESKLKAARMHIFVRRGGPNYQKGLAKMRALGEEIGVPIEVYGPEATMTGICKQAIDYI 419 (423)
T ss_pred ccccchhhhhhhhHHHHHHHHhhhccccCCccEEEECCCCCHHHHHHHHHHhHHhcCCcEEEeCCCCCHHHHHHHHHhhh
Confidence 5422 11 00000000000 01123344568899999999973 2457889999999888754
Q ss_pred H
Q psy8684 182 S 182 (226)
Q Consensus 182 ~ 182 (226)
.
T Consensus 420 ~ 420 (423)
T PLN02235 420 T 420 (423)
T ss_pred c
Confidence 4
No 70
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=23.91 E-value=1.3e+02 Score=25.61 Aligned_cols=51 Identities=12% Similarity=0.206 Sum_probs=29.8
Q ss_pred EEEEeCCCCeEEEEECCCCcee---eeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHHHH
Q psy8684 121 IAGWDTVKGGQVYALPASGVLT---RQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKM 179 (226)
Q Consensus 121 iaG~d~~~~p~ly~id~~G~~~---~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la~~ 179 (226)
++|.|. ++..+|..|... -.+-||.|.|+ |+....+. -+++++|.-+++.+
T Consensus 104 IGGQD~----K~I~~~~~G~v~~f~MNdkCAAGTG~-FLe~~A~~---L~i~leel~~~a~~ 157 (262)
T TIGR02261 104 IGALHG----RAIRMDERGKVEAYKMTSQCASGSGQ-FLENIARY---LGIAQDEIGSLSQQ 157 (262)
T ss_pred eCCCce----EEEEEcCCCcEeeEEecCcccccccH-HHHHHHHH---hCCCHHHHHHHHhc
Confidence 455554 467888888754 36778889887 33322222 25566665554433
No 71
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=22.96 E-value=1.5e+02 Score=21.10 Aligned_cols=40 Identities=15% Similarity=0.297 Sum_probs=29.3
Q ss_pred EecCChHHHHHHHhhhh----cCCCCHHHHHHHHHHHHHHHHhc
Q psy8684 148 VGGSGSSYILGYVDKEW----RANMKKQECIDFIKMGLSLAMAR 187 (226)
Q Consensus 148 a~Gsg~~~~~~~Le~~~----~~~~s~~eai~la~~~l~~~~~~ 187 (226)
.+|++..+..-+++... +.+++.++|.+++...+.-+.+.
T Consensus 12 lsGsgpA~~~~~~eal~~a~v~~Gl~~~~A~~lv~~t~~G~a~l 55 (107)
T PF14748_consen 12 LSGSGPAYFFLFIEALADAAVAQGLPREEARKLVAQTFIGAAKL 55 (107)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 35788777777776543 47899999999999999887754
No 72
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=22.59 E-value=1.7e+02 Score=25.17 Aligned_cols=73 Identities=12% Similarity=0.136 Sum_probs=51.6
Q ss_pred ceEeecCeeEEEeCCChHHHHHHHHHHHHH-------HHhhhhccccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEE
Q psy8684 50 KLTKISDNIYCCRSGTAADTQAISDLVSYH-------IDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIA 122 (226)
Q Consensus 50 Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~lia 122 (226)
+|..|++|+..|..|+.+-..-|...-... ..+|.+|+ ..+|..++.+.+..++..+... ...-.+..++-
T Consensus 2 ~vlaIqShVv~G~vGn~AA~f~lq~~G~~V~~vpTV~fSnHtgyg-~~~g~v~~~e~l~~~l~~l~~~-~~~~~~davlt 79 (281)
T COG2240 2 RILAIQSHVVYGSVGNSAAIFPLQRLGLDVWAVPTVQFSNHTGYG-KWTGIVMPPEQLADLLNGLEAI-DKLGECDAVLT 79 (281)
T ss_pred cEEEEeeeEeecccccHhHHHHHHHcCCceeeeceEEecCCCCCC-CCCCcCCCHHHHHHHHHHHHhc-ccccccCEEEE
Confidence 578899999999999998887666554333 24666665 4577788999988888876541 12344666777
Q ss_pred EE
Q psy8684 123 GW 124 (226)
Q Consensus 123 G~ 124 (226)
||
T Consensus 80 GY 81 (281)
T COG2240 80 GY 81 (281)
T ss_pred cc
Confidence 76
No 73
>PF01592 NifU_N: NifU-like N terminal domain; InterPro: IPR002871 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the N-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal and a C-terminal domain (IPR001075 from INTERPRO) []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 3LVL_A 4EB5_C 4EB7_C 1WFZ_A 2Z7E_C 2AZH_A 1XJS_A 1Q48_A 1R9P_A 2KQK_A ....
Probab=21.05 E-value=3.4e+02 Score=19.84 Aligned_cols=63 Identities=13% Similarity=0.121 Sum_probs=43.7
Q ss_pred EeCCCCe--EEE-EECCC-CceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHh
Q psy8684 124 WDTVKGG--QVY-ALPAS-GVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186 (226)
Q Consensus 124 ~d~~~~p--~ly-~id~~-G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la~~~l~~~~~ 186 (226)
.++.-|- .|| .+|.. |...+..|.+.|.....+..-+-..+-.++|++||..+..+-+.....
T Consensus 30 ~n~~CGD~i~i~l~i~~~~~~I~d~~f~~~GC~~~~Asas~~~~~i~gk~l~ea~~i~~~~i~~~l~ 96 (126)
T PF01592_consen 30 GNPSCGDEIRIYLKIDDDGGRIKDAKFQGFGCAISIASASMMCELIKGKTLEEALKITAEDIEEALG 96 (126)
T ss_dssp EETTTTEEEEEEEEESSSTSBEEEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHCHHHHHHHHHHT
T ss_pred cCCCCCCEEEEEEEEecCCCeEEEEEEEeecChHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence 4443343 444 56887 788899999999766666665666666789999998877666655553
No 74
>PF08269 Cache_2: Cache domain; InterPro: IPR013163 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions []. This entry is composed of the type 2 Cache domain.; PDB: 2QHK_A 4EXO_A.
Probab=21.01 E-value=1.4e+02 Score=20.44 Aligned_cols=45 Identities=9% Similarity=0.109 Sum_probs=23.9
Q ss_pred HHHHHHhhhhc----CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 155 YILGYVDKEWR----ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 155 ~~~~~Le~~~~----~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
.+.++++..+. -.+|.+||...+++.|..... ++.=.+++++.+|
T Consensus 18 ~a~~~i~~~~~~~~~g~ls~eea~~~a~~~l~~~r~-----~~~gY~fi~d~~g 66 (95)
T PF08269_consen 18 SAISLIESYYAQAQAGKLSEEEAQQQAREALRALRY-----GGDGYFFIYDMDG 66 (95)
T ss_dssp HHHHHTHHHHHC-STT-----TTHHHHHHHHHH--S-----BTTB--EEE-TTS
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhcccc-----CCCCeEEEEeCCC
Confidence 34455555443 358999999999999977754 2334688889999
No 75
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.23 E-value=1.1e+02 Score=24.59 Aligned_cols=35 Identities=20% Similarity=0.516 Sum_probs=24.5
Q ss_pred EEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 118 AIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 118 ~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++-|+|+ +.+|..||.|- .....-...|+..|+
T Consensus 150 ~v~itgyDk---~n~yynDpyG~----------kn~~~~~~~~e~g~n 184 (195)
T COG4990 150 SVLITGYDK---YNIYYNDPYGY----------KNRKISHTYLEDGWN 184 (195)
T ss_pred eeEeecccc---cceEecccccc----------chhhhhHHHHHHHHh
Confidence 457779987 78999999962 333445566777775
Done!