Query psy8684
Match_columns 226
No_of_seqs 105 out of 1159
Neff 8.3
Searched_HMMs 29240
Date Sat Aug 17 01:11:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8684.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8684hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4p_a Proteasome subunit beta 100.0 4.4E-49 1.5E-53 323.5 23.4 202 17-225 1-204 (219)
2 1yar_H Proteasome beta subunit 100.0 9E-49 3.1E-53 321.3 24.8 204 12-224 3-208 (217)
3 1iru_H 20S proteasome; cell cy 100.0 8.2E-49 2.8E-53 318.8 23.6 200 18-222 1-200 (205)
4 1j2q_H Proteasome beta subunit 100.0 4.9E-48 1.7E-52 313.5 26.0 199 18-224 1-201 (202)
5 1ryp_A 20S proteasome; multica 100.0 1.2E-48 4.1E-53 325.6 21.9 206 11-225 23-241 (243)
6 3nzj_K Proteasome component PR 100.0 1.4E-48 4.9E-53 331.5 22.5 207 11-224 69-276 (287)
7 1ryp_H 20S proteasome; multica 100.0 8E-48 2.7E-52 313.0 25.2 197 8-211 1-197 (205)
8 1iru_A 20S proteasome; cell cy 100.0 2.1E-48 7.3E-53 324.7 21.4 208 11-225 29-244 (246)
9 1iru_B 20S proteasome; cell cy 100.0 1.8E-48 6.1E-53 322.7 20.4 204 11-224 25-233 (233)
10 1ryp_C 20S proteasome; multica 100.0 2.7E-48 9.4E-53 323.7 21.6 209 11-224 25-242 (244)
11 1ryp_N 20S proteasome; multica 100.0 2E-48 6.9E-53 322.4 20.2 207 11-225 2-223 (233)
12 1iru_N 20S proteasome; cell cy 100.0 3.6E-48 1.2E-52 318.1 21.2 203 11-221 2-210 (219)
13 1ryp_E 20S proteasome; multica 100.0 2.6E-48 9E-53 323.4 20.5 206 11-224 20-236 (242)
14 1iru_C 20S proteasome; cell cy 100.0 2.5E-48 8.5E-53 326.9 20.2 210 11-224 25-241 (261)
15 1iru_L 20S proteasome; cell cy 100.0 1.9E-47 6.4E-52 310.5 24.7 199 18-224 1-200 (204)
16 1ryp_L 20S proteasome; multica 100.0 8.3E-48 2.8E-52 314.4 22.4 200 18-224 1-201 (212)
17 1iru_E 20S proteasome; cell cy 100.0 3.9E-48 1.3E-52 322.2 20.4 204 11-223 28-241 (241)
18 3unf_N Proteasome subunit beta 100.0 1.3E-47 4.4E-52 310.3 22.8 198 18-222 1-199 (199)
19 1yar_A Proteasome alpha subuni 100.0 4.7E-48 1.6E-52 320.2 20.7 201 11-220 28-233 (233)
20 3h4p_A Proteasome subunit alph 100.0 6.7E-48 2.3E-52 324.4 17.8 205 11-224 32-241 (264)
21 1ryp_D 20S proteasome; multica 100.0 4.6E-47 1.6E-51 315.7 22.5 205 11-224 22-235 (241)
22 3nzj_H Proteasome component PU 100.0 6E-47 2E-51 317.8 23.0 193 7-204 19-211 (261)
23 3unf_H Proteasome subunit beta 100.0 6.6E-47 2.3E-51 313.2 22.8 196 18-221 1-196 (234)
24 1q5r_H Proteasome beta-type su 100.0 1.2E-46 4.2E-51 320.6 24.4 208 10-224 58-283 (294)
25 1iru_M 20S proteasome; cell cy 100.0 4.9E-46 1.7E-50 304.1 25.6 194 13-211 5-208 (213)
26 1ryp_M 20S proteasome; multica 100.0 6.2E-46 2.1E-50 305.4 25.8 194 13-211 5-217 (222)
27 1g0u_M Proteasome component PR 100.0 6.5E-47 2.2E-51 319.0 20.2 203 11-220 35-252 (266)
28 1iru_G 20S proteasome; cell cy 100.0 5.3E-47 1.8E-51 317.6 19.0 206 11-223 27-239 (254)
29 1iru_D 20S proteasome; cell cy 100.0 6E-47 2.1E-51 316.3 19.2 205 11-225 23-234 (248)
30 1ryp_B 20S proteasome; multica 100.0 2.3E-46 7.7E-51 313.1 22.2 207 11-223 25-250 (250)
31 1j2p_A Alpha-ring, proteasome 100.0 5.2E-46 1.8E-50 310.3 22.6 204 11-224 28-237 (246)
32 1iru_J 20S proteasome; cell cy 100.0 2.6E-45 9E-50 298.1 25.1 194 14-212 5-201 (205)
33 1iru_F 20S proteasome; cell cy 100.0 2.7E-46 9.1E-51 314.8 19.6 204 11-224 26-237 (263)
34 1ryp_F 20S proteasome; multica 100.0 3.4E-46 1.2E-50 309.0 19.7 199 11-220 25-233 (233)
35 1ryp_K 20S proteasome; multica 100.0 2.7E-45 9.3E-50 296.5 23.2 190 17-213 1-194 (198)
36 1ryp_J 20S proteasome; multica 100.0 1.1E-44 3.6E-49 294.3 26.1 194 13-212 4-200 (204)
37 1q5q_H Proteasome beta-type su 100.0 6.9E-45 2.3E-49 301.6 24.5 200 18-224 1-218 (235)
38 3mi0_A Proteasome subunit alph 100.0 1.8E-45 6.1E-50 306.8 20.5 203 7-223 18-237 (248)
39 1ryp_G 20S proteasome; multica 100.0 2.1E-45 7.3E-50 306.2 20.4 203 11-222 24-237 (244)
40 2jay_A Proteasome; hydrolase; 100.0 3.5E-45 1.2E-49 311.4 22.1 208 8-224 50-275 (291)
41 1ryp_I 20S proteasome; multica 100.0 1.1E-44 3.8E-49 297.9 23.9 194 18-218 1-194 (222)
42 1iru_I 20S proteasome; cell cy 100.0 8.4E-45 2.9E-49 300.8 22.1 195 18-220 1-195 (234)
43 3nzj_F Proteasome component C1 100.0 3E-45 1E-49 311.2 19.8 202 11-218 28-238 (288)
44 1iru_K 20S proteasome; cell cy 100.0 2.9E-44 1E-48 291.1 22.7 186 17-207 1-189 (201)
45 1q5q_A Proteasome alpha-type s 100.0 2.6E-44 8.9E-49 301.9 17.7 204 7-224 18-236 (259)
46 2z3b_A ATP-dependent protease 100.0 6.4E-36 2.2E-40 238.2 20.4 169 15-201 3-180 (180)
47 1g3k_A ATP-dependent protease 100.0 1.9E-35 6.5E-40 234.2 20.4 167 18-202 1-174 (174)
48 1m4y_A ATP-dependent protease 100.0 2.8E-35 9.7E-40 232.6 19.8 165 18-200 1-171 (171)
49 4fo5_A Thioredoxin-like protei 40.2 18 0.00063 25.3 2.7 28 196-223 116-143 (143)
50 3eur_A Uncharacterized protein 36.2 40 0.0014 23.4 4.0 29 194-222 114-142 (142)
51 3c2i_A Methyl-CPG-binding prot 31.0 47 0.0016 22.7 3.4 28 191-221 40-67 (97)
52 3ewl_A Uncharacterized conserv 30.5 29 0.001 24.0 2.4 32 194-225 110-141 (142)
53 3vxv_A Methyl-CPG-binding doma 29.9 55 0.0019 20.8 3.4 29 191-222 22-50 (69)
54 3fpw_A HBPS, extracellular HAE 29.7 1.4E+02 0.005 22.9 6.4 37 165-205 62-98 (192)
55 2a2l_A Unknown; structural gen 29.7 91 0.0031 22.7 5.1 37 166-206 10-46 (145)
56 2ky8_A Methyl-CPG-binding doma 27.1 87 0.003 20.0 4.0 28 192-222 30-57 (72)
57 1apy_B Aspartylglucosaminidase 23.9 1.8E+02 0.006 21.2 5.6 57 144-205 47-107 (141)
58 1p4k_A N(4)-(beta-N-acetylgluc 21.6 2.2E+02 0.0076 23.4 6.4 69 138-206 189-266 (295)
59 2lrn_A Thiol:disulfide interch 21.3 58 0.002 22.8 2.6 30 194-223 110-139 (152)
60 4gof_A Small glutamine-rich te 21.1 1.4E+02 0.0049 17.8 3.9 35 155-189 8-45 (52)
61 4evm_A Thioredoxin family prot 21.1 1.1E+02 0.0037 20.3 4.0 31 194-224 105-138 (138)
62 1d9n_A Methyl-CPG-binding prot 20.1 65 0.0022 20.8 2.3 29 191-222 27-55 (75)
No 1
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=4.4e-49 Score=323.54 Aligned_cols=202 Identities=28% Similarity=0.426 Sum_probs=193.3
Q ss_pred CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+ ++++++++
T Consensus 1 Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~ 76 (219)
T 3h4p_a 1 MTTTVGLICDDAVILATDKRASLGNLVADKEAKKLYKIDDYIAMTIAGSVGDAQAIVRLLIAEAKLYK----MRTGRNIP 76 (219)
T ss_dssp -CCEEEEEETTEEEEECCCCEEETTEEEETTCCCEEEEETTEEEECCSCHHHHHHHHHHHHHHHHHHH----HHTSSCCC
T ss_pred CccEEEEEECCEEEEEEcCCcccCCEeeccccceeEEecCCEEEEeeEcHHHHHHHHHHHHHHHHHHH----HHcCCCCC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeee-eEEecCChHHHHHHHhhhhcCCCCHHHHH
Q psy8684 97 VYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQECI 174 (226)
Q Consensus 97 ~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~~Le~~~~~~~s~~eai 174 (226)
++.+++++++++|.++ +||++++|+||||+++||+||.+||+|++.+++ +.|+|+|+++++++||+.|+++||++||+
T Consensus 77 v~~la~~l~~~~~~~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~ms~eea~ 156 (219)
T 3h4p_a 77 PLACATLLSNILHSSRMFPFLTQIIIGGYDLLEGAKLFSLDPLGGMNEEKTFTATGSGSPIAYGVLEAGYDRDMSVEEGI 156 (219)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCCCCEEEEEETTTEEEEEEECSSCCEEECSSEEEESTTHHHHHHHHHTSCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEEECCCCceEecCCEEEEcCCHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999999999885 599999999999986789999999999999988 99999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 175 DFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 175 ~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
+++++||..+.++|..++++++|++|+++| ++.|+++||+++|..++.
T Consensus 157 ~la~~al~~~~~rd~~sg~~i~v~vi~~~g---~~~l~~~ei~~~l~~~~~ 204 (219)
T 3h4p_a 157 KLALNALKSAMERDTFSGNGISLAVITKDG---VKIFEDEEIEKILDSMKA 204 (219)
T ss_dssp HHHHHHHHHHHTSCSSCCSCCCEEEEETTE---EEECCHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHhhcCCCCCcEEEEEEeCCC---eEEcCHHHHHHHHHHhhc
Confidence 999999999999999999999999999998 568999999999998764
No 2
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H 1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Probab=100.00 E-value=9e-49 Score=321.26 Aligned_cols=204 Identities=20% Similarity=0.378 Sum_probs=190.7
Q ss_pred ccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccccc
Q psy8684 12 TEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREM 91 (226)
Q Consensus 12 ~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~ 91 (226)
.++.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||..+|++.+.++++.+++.|+ +++
T Consensus 3 ~~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~ 78 (217)
T 1yar_H 3 QTLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMKAELELYR----LQR 78 (217)
T ss_dssp ------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred CCCCCCccEEEEEeCCEEEEEEcCCCCCCCEEecCccCCeEEeCCCEEEEeCcCHHHHHHHHHHHHHHHHHHH----HHH
Confidence 4678999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred CCCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684 92 NEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKK 170 (226)
Q Consensus 92 ~~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~ 170 (226)
+++++++.+++++++++|.+| +||++++|+|||| .||+||.+||+|++.+++++|+|+|+++++++||+.|+++||+
T Consensus 79 ~~~~~v~~la~~l~~~~~~~r~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~ 156 (217)
T 1yar_H 79 RVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTV 156 (217)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEES--SSEEEEEECTTCCEEEESEEEESTTHHHHHHHHHHHCCTTCCH
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEC--CCCEEEEECCCCCeEecCEEEEcCCHHHHHHHHHhhcccCCCH
Confidence 999999999999999999876 5999999999999 6799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCCeEEEEeChhhHhhHhhccC
Q psy8684 171 QECIDFIKMGLSLAMARDYASGGLINIGVLEN-GKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~-~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+||++++++||..+.++|..+++++++++|++ +| ++.++++||+.++..++
T Consensus 157 eea~~la~~al~~~~~rd~~s~~~i~v~vi~~~~g---~~~~~~~ei~~~~~~~~ 208 (217)
T 1yar_H 157 DEGVDLVIRAISAAKQRDSASGGMIDVAVITRKDG---YVQLPTDQIESRIRKLG 208 (217)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCCSCCEEEEEETTTE---EEECCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCC---EEEcCHHHHHHHHHHHH
Confidence 99999999999999999998999999999999 66 46799999999998765
No 3
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_N* 3une_N
Probab=100.00 E-value=8.2e-49 Score=318.78 Aligned_cols=200 Identities=48% Similarity=0.865 Sum_probs=194.1
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (205)
T 1iru_H 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVTYQLGFHS----IELNEPPLV 76 (205)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHTSCCCH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCcEEecCCcCceEEcCCCEEEEcCccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence 6899999999999999999999889999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI 177 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la 177 (226)
+.+++++++++|.+++||++++|+||||++++|+||.+||+|++.+++++++|+|+++++++||+.|+++||++||++++
T Consensus 77 ~~la~~l~~~~~~~~~p~~~~~lvaG~D~~~gp~ly~~d~~G~~~~~~~~a~Gsgs~~a~~~Le~~~~~~~s~eea~~l~ 156 (205)
T 1iru_H 77 HTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFT 156 (205)
T ss_dssp HHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEECSEEEESGGGGGGHHHHHHHCCTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcCccEEEEEEEEeCCCCCEEEEECCCCcEEecCEEEECCCHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 99999999999999999999999999998678999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
++||..+.++|..+++++++++|+++| +.++.++++||+.++++
T Consensus 157 ~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~l~~~ei~~~~~~ 200 (205)
T 1iru_H 157 ANALALAMERDGSSGGVIRLAAIAESG-VERQVLLGDQIPKFAVA 200 (205)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHhccccCCcEEEEEEeCCC-eEEEEeChHHhhHHHhh
Confidence 999999999999899999999999999 88889999999999876
No 4
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A {Archaeoglobus fulgidus} SCOP: d.153.1.4
Probab=100.00 E-value=4.9e-48 Score=313.53 Aligned_cols=199 Identities=23% Similarity=0.404 Sum_probs=191.8
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tt~vgi~~~dgVvlaad~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~~ 76 (202)
T 1j2q_H 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIKIEANLYE----IRRERKPTV 76 (202)
T ss_dssp CCEEEEEETTEEEEEEECCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred CcEEEEEeCCEEEEEECCCcCcCCEEeeccccCEEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeee-eEEecCChHHHHHHHhhhhcCCCCHHHHHH
Q psy8684 98 YRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQECID 175 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~-~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~ 175 (226)
+.+++++++++|.+| +||++++|+||||+ +||+||.+||+|++.+++ ++|+|+|+++++++||+.|+++||++||++
T Consensus 77 ~~~a~~l~~~~~~~r~rp~~~~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~eea~~ 155 (202)
T 1j2q_H 77 RAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSIDPIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVE 155 (202)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEEEEEEET-TEEEEEEECTTCCEEEESSEEEESTTHHHHHHHHHHHCCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEEEEEeC-CCCEEEEECCCCCeeecCCEEEEcCCHHHHHHHHHhhcCCCcCHHHHHH
Confidence 999999999999876 59999999999998 789999999999999999 999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 176 FIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 176 la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
++++||..+.++|..+++++++++|+++| ++.++++||++++..++
T Consensus 156 la~~al~~~~~~d~~s~~~i~v~vi~~~g---~~~l~~~ei~~~~~~~~ 201 (202)
T 1j2q_H 156 LAVRAIYSAMKRDSASGDGIDVVKITEDE---FYQYSPEEVEQILAKFR 201 (202)
T ss_dssp HHHHHHHHHHTTCTTSCSCEEEEEECSSC---EEECHHHHHHHHGGGTT
T ss_pred HHHHHHHHHHhcCCCCCCcEEEEEEeCCC---eEEeCHHHHHHHHHHhh
Confidence 99999999999999899999999999998 46799999999999875
No 5
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G* 1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G* 3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G* 3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Probab=100.00 E-value=1.2e-48 Score=325.64 Aligned_cols=206 Identities=10% Similarity=0.080 Sum_probs=195.8
Q ss_pred CccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc
Q psy8684 11 GTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR 89 (226)
Q Consensus 11 ~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 89 (226)
.||+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+ +
T Consensus 23 ~~av~~~Gtt~vgi~~~dgVvlaad~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~r~~~~~~~----~ 97 (243)
T 1ryp_A 23 FKATNQTNINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRAKAEAAEFR----Y 97 (243)
T ss_dssp HHHTTTTCCCEEEEECSSEEEEEEECCCC-CTTBCGGGCCSEEECSSSCEEEEESCHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHhcCCCcEEEEEeCCEEEEEEEecCC-ccccCCCcCCceEEECCCEEEEEEecHHHHHHHHHHHHHHHHHHH----H
Confidence 689999 9999999999999999999999 688889999999999999999999999999999999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684 90 EMNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW 164 (226)
Q Consensus 90 ~~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~ 164 (226)
+++++++++.+|+++++++|.| .+||++++|+||||+++||+||.+||+|++.+++++|+|+|++.++++||+.|
T Consensus 98 ~~~~~~~v~~la~~l~~~l~~y~~~~~~rP~~v~~lvaG~D~~~gp~Ly~~dp~G~~~~~~~~a~G~gs~~a~~~Le~~~ 177 (243)
T 1ryp_A 98 KYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHF 177 (243)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHBTTSCCCSCEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhccCCccccceEEEEEEEcCCCCcEEEEEcCCCCEEEEEEEEECCCcHHHHHHHHHHh
Confidence 9999999999999999999654 36999999999999767899999999999999999999999999999999999
Q ss_pred cC-------CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 165 RA-------NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 165 ~~-------~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
++ +||++||++++++||..+.++| .++++++|++|+++| ++.++++||++++..+++
T Consensus 178 ~~~~~~~~~~ms~eea~~l~~~al~~~~~rd-~s~~~iev~vi~~~g---~~~l~~~ei~~~~~~~~~ 241 (243)
T 1ryp_A 178 KKSKIDHINEESWEKVVEFAITHMIDALGTE-FSKNDLEVGVATKDK---FFTLSAENIEERLVAIAE 241 (243)
T ss_dssp HHHCSSSCCCSSHHHHHHHHHHHHHHHHTCC-CCTTSEEEEEEETTE---EEECCHHHHHHHHHHHTT
T ss_pred hhcccccccCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC---eEECCHHHHHHHHHHhhc
Confidence 99 9999999999999999999999 689999999999998 578999999999998864
No 6
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_K* 3nzx_K* 4b4t_5
Probab=100.00 E-value=1.4e-48 Score=331.48 Aligned_cols=207 Identities=21% Similarity=0.357 Sum_probs=192.8
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
+.++.+|||+|||+++||||||+|+|.+.|.++.+++.+||++|++||+++++|..+|++.+.++++.+++.|+ ++
T Consensus 69 ~~~v~~GtT~vgik~~dGVVlAaD~r~t~G~li~~~~~~KI~~I~d~i~~~~aG~~AD~~~l~~~lr~~~~~y~----~~ 144 (287)
T 3nzj_K 69 KIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE----LR 144 (287)
T ss_dssp -------CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred hhheccCceEEEEEECCEEEEEEccccccCceeecCCcceEEEEcCcEEEEecCCHHHHHHHHHHHHHHHHHHH----HH
Confidence 77899999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK 169 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s 169 (226)
++++++++.+++++++++|.+|. ||++++|+||||+++||+||.+||.|++.++++.|+|+|+.+++++|++.|+++||
T Consensus 145 ~~~~isv~~la~~ls~~l~~~r~~p~~v~~lvaG~D~~~gp~Ly~iDp~G~~~~~~~~AiGsgs~~a~~~Le~~y~~dms 224 (287)
T 3nzj_K 145 EKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLS 224 (287)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHTSCCTTCC
T ss_pred hCCCCCHHHHHHHHHHHHHhhcCCCceEEEEEEEEcCCCCCEEEEECCCceEEEcCeEEEecchHHHHHHHHHhhcCCCC
Confidence 99999999999999999999875 99999999999966899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
++||++++++||..+.++|..++++++|++|+++| ++.++++||++++.+++
T Consensus 225 ~eEAi~la~~aL~~a~~rD~~sg~~i~V~vItkdg---~~~l~~~ev~~~l~~~~ 276 (287)
T 3nzj_K 225 VEDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDG---WIYHGNHDVGELFWKVK 276 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE---EEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCCceEEEEEeCCC---EEEeCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 46799999999887664
No 7
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N* 3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N* 1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N* 3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Probab=100.00 E-value=8e-48 Score=312.99 Aligned_cols=197 Identities=44% Similarity=0.803 Sum_probs=189.4
Q ss_pred CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684 8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG 87 (226)
Q Consensus 8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 87 (226)
|+ .+++++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+
T Consensus 1 ~~-~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~--- 76 (205)
T 1ryp_H 1 LK-KGEVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAIADIVQYHLELYT--- 76 (205)
T ss_dssp CC-TTCCBCCCCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH---
T ss_pred CC-CCCCcCCceEEEEEeCCEEEEEEcCCcccCcEEEcCCcCceEEcCCCEEEEccCCHHHHHHHHHHHHHHHHHHH---
Confidence 44 79999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCC
Q psy8684 88 YREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRAN 167 (226)
Q Consensus 88 ~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~ 167 (226)
+++++ ++++.+++++++++|.+|..|++++|+||||++++|+||.+||+|++.+++++|+|+|+++++++||+.|+++
T Consensus 77 -~~~~~-~~v~~la~~l~~~~~~~~~~~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ 154 (205)
T 1ryp_H 77 -SQYGT-PSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEVYTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFREN 154 (205)
T ss_dssp -HHHSS-CCHHHHHHHHHHHHHHTTTTCCEEEEEEEEETTTEEEEEEECTTSCCEEESEEEESGGGGGGHHHHHHHCCTT
T ss_pred -HHhCC-CCHHHHHHHHHHHHHhhhcCceEEEEEEEEecCCCcEEEEECCCccEEecCEEEEEecHHHHHHHHHhccCCC
Confidence 99999 9999999999999999987899999999999767899999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684 168 MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF 211 (226)
Q Consensus 168 ~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l 211 (226)
||++||++++++||..+.++|..+++++++++|+++| +.++.+
T Consensus 155 ~s~eea~~l~~~al~~a~~~d~~sg~~i~v~vi~~~g-~~~~~~ 197 (205)
T 1ryp_H 155 MSKEETVDFIKHSLSQAIKWDGSSGGVIRMVVLTAAG-VERLIF 197 (205)
T ss_dssp CCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-EEEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCccCCeEEEEEEcCCC-EEEEEe
Confidence 9999999999999999999999999999999999999 776666
No 8
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Probab=100.00 E-value=2.1e-48 Score=324.69 Aligned_cols=208 Identities=16% Similarity=0.205 Sum_probs=196.9
Q ss_pred CccccC-CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc
Q psy8684 11 GTEVTC-GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR 89 (226)
Q Consensus 11 ~~ai~~-gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 89 (226)
.+|+++ |+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ +
T Consensus 29 ~~av~~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~ 103 (246)
T 1iru_A 29 FKAINQGGLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWK----Y 103 (246)
T ss_dssp HHHHHTTCCEEEEEECSSEEEEEEECCCC-CSSBCGGGCCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHhcCCCCEEEEEeCCEEEEEEeecCC-CcccCCCccCceEEECCCEEEEEeccHHHHHHHHHHHHHHHHHHH----H
Confidence 478888 9999999999999999999999 578888999999999999999999999999999999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684 90 EMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW 164 (226)
Q Consensus 90 ~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~ 164 (226)
+++++++++.+++++++++|.|+ +||++++|+||||+++||+||.+||+|++.+++++|+|+|+++++++||+.|
T Consensus 104 ~~~~~~~~~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 183 (246)
T 1iru_A 104 KYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKV 183 (246)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHBSSBCCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEEETTHHHHHHHHHHHT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhcCCCCCCcceEEEEEEEeCCCCeEEEEEcCCeeEEEeeEEEECCCcHHHHHHHHHhh
Confidence 99999999999999999976553 5999999999999767899999999999999999999999999999999999
Q ss_pred cC--CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 165 RA--NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 165 ~~--~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
++ +|+++||++++++||..+.++| .++++++|++|+++| ++++.++++||++++..+++
T Consensus 184 ~~~~~ms~eea~~la~~al~~~~~rd-~sg~~i~v~vi~~~g-~~~~~l~~~ei~~~~~~~~~ 244 (246)
T 1iru_A 184 KKKFDWTFEQTVETAITCLSTVLSID-FKPSEIEVGVVTVEN-PKFRILTEAEIDAHLVALAE 244 (246)
T ss_dssp TSCCCCCHHHHHHHHHHHHHHHTTCC-CCTTSEEEEEEETTE-EEEEECCHHHHHHHHHHHHT
T ss_pred cccCCCCHHHHHHHHHHHHHHHhccc-CCCCcEEEEEEECCC-CeEEECCHHHHHHHHHHhhc
Confidence 99 9999999999999999999999 789999999999999 87889999999999988753
No 9
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Probab=100.00 E-value=1.8e-48 Score=322.69 Aligned_cols=204 Identities=15% Similarity=0.237 Sum_probs=194.5
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 99 (233)
T 1iru_B 25 LAAVAGGAPSVGIKAANGVVLATEKKQK-SILYDERSVHKVEPITKHIGLVYSGMGPDYRVLVHRARKLAQQYY----LV 99 (233)
T ss_dssp HHHHHTSCCEEEEECSSCEEEEEECCCC-CSSBCSTTCCSSEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCcEEEEEeCCEEEEEEEecCC-ccccccccCCeEEEECCCEEEEEEEccHHHHHHHHHHHHHHHHHH----HH
Confidence 7889999999999999999999999998 478888999999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++++++++|.|+ +||++++|+||||+ .||+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus 100 ~~~~~~v~~la~~l~~~~~~y~~~~~~rP~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 178 (233)
T 1iru_B 100 YQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNE-GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYN 178 (233)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTTSBTBCCCSEEEEEEEECS-SSEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHhcCcCCCCCcEEEEEEEEEeC-CCCeEEEECCCCCEEEeeEEEECCCCHHHHHHHHHHhc
Confidence 9999999999999999998774 59999999999996 78999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
++||++||++++++||..+.++| .++++++|++|+++| ++.++++||+.++..++
T Consensus 179 ~~ms~eea~~la~~al~~~~~~d-~sg~~i~v~vi~~~g---~~~l~~~ei~~~~~~~~ 233 (233)
T 1iru_B 179 EDLELEDAIHTAILTLKESFEGQ-MTEDNIEVGICNEAG---FRRLTPTEVKDYLAAIA 233 (233)
T ss_dssp TTCCHHHHHHHHHHHHHTTCCSC-CCSSSEEEEEEETTE---EEECCHHHHHHHHTTCC
T ss_pred cCCCHHHHHHHHHHHHHHHhhcc-CCCCCEEEEEEECCC---EEECCHHHHHHHHHhcC
Confidence 99999999999999999999999 678999999999998 56899999999998875
No 10
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B* 1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B* 3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B* 3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Probab=100.00 E-value=2.7e-48 Score=323.66 Aligned_cols=209 Identities=19% Similarity=0.258 Sum_probs=196.5
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 100 (244)
T 1ryp_C 25 LESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILINTARIHAQNYL----KT 100 (244)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEEECSSCCSSBCSTTCCSSEEESSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEeeccCCcCccCCCCCCcEEEECCCEEEEEEEcHHHHHHHHHHHHHHHHHHH----HH
Confidence 68899999999999999999999999999877668899999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++++++++|.+ .+||++++|+||||.+++|+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus 101 ~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (244)
T 1ryp_C 101 YNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYK 180 (244)
T ss_dssp HSSCCCHHHHHHHHHHHHHHHHHBSSCCCCCEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHhccCCccceEEEEEEEEEcCCCCCEEEEECCCccEEeeeEEEECCCcHHHHHHHHHhhh
Confidence 999999999999999999865 359999999999994489999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc--CCCCeE--EEEeChhhHhhHhhccC
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE--NGKPME--KLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~--~~g~~~--~~~l~~~ei~~~~~~~~ 224 (226)
++|+++||++++++||..+.++|..+++++++++|+ ++| .. ++.|+++||++++..+.
T Consensus 181 ~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~~~-~~~~~~~l~~~ei~~~~~~~~ 242 (244)
T 1ryp_C 181 DDMKVDDAIELALKTLSKTTDSSALTYDRLEFATIRKGAND-GEVYQKIFKPQEIKDILVKTG 242 (244)
T ss_dssp TTCCHHHHHHHHHHHHHHHCSSSSCCGGGEEEEEEECCSSS-SSCEEEECCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHHHHHHhccccCCCCcEEEEEEEeecCC-CceeEEECCHHHHHHHHHHhh
Confidence 999999999999999999999955578999999999 988 53 78999999999998764
No 11
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N* 1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M* 2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M* 3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Probab=100.00 E-value=2e-48 Score=322.39 Aligned_cols=207 Identities=18% Similarity=0.223 Sum_probs=196.4
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc-
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR- 89 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~- 89 (226)
++++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+ +
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 77 (233)
T 1ryp_N 2 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA----YD 77 (233)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH----TT
T ss_pred cccccCCceEEEEEECCEEEEEEcCccccCCeeecCCcCceEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHh----hc
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ----ccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684 90 ----EMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK 162 (226)
Q Consensus 90 ----~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~ 162 (226)
+++++++++.++++++++++.++ +||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+
T Consensus 78 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~ 157 (233)
T 1ryp_N 78 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 157 (233)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHHHHHHHTT
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhcCCCCCceEEEEEEEEcCCCCEEEEEECCCcCeEEcCEEEECcCHHHHHHHHHH
Confidence 89999999999999999998765 69999999999998669999999999999999999999999999999999
Q ss_pred hhcC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CCeEEEEeChhhHhhH-hhccCC
Q psy8684 163 EWRA-----NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG-KPMEKLVFTQEEVQHF-FNHEAT 225 (226)
Q Consensus 163 ~~~~-----~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~-g~~~~~~l~~~ei~~~-~~~~~~ 225 (226)
.|++ +||++||++++++||..+.++|..++++++|++|+++ | + +.++++||+.+ | ++++
T Consensus 158 ~~~~~~~~~~ms~eea~~la~~al~~~~~rd~~sg~~i~v~vi~~~~g-~--~~~~~~~i~~~~w-~~~~ 223 (233)
T 1ryp_N 158 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG-L--TFKKNLQVENMKW-DFAK 223 (233)
T ss_dssp TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE-E--EEEEEEECCSCCC-GGGG
T ss_pred hhccccccCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEECCCC-e--EEcChHhcccccc-hhhh
Confidence 9999 9999999999999999999999999999999999999 7 4 57899999999 7 3443
No 12
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Probab=100.00 E-value=3.6e-48 Score=318.05 Aligned_cols=203 Identities=13% Similarity=0.168 Sum_probs=194.4
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc-
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR- 89 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~- 89 (226)
++|+.+|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+++++|..+|++.+.++++.+++.|+ +
T Consensus 2 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 77 (219)
T 1iru_N 2 QNPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLKQVLGQMVIDEE----LL 77 (219)
T ss_dssp CSCCSEECCCEEEEETTEEEEEEECCEEETTEEEECSCCCEEEETTTEEEEEEEEHHHHHHHHHHHHHHHHHHH----HH
T ss_pred CCCccCCceEEEEEeCCEEEEEECCccccCcEEecCCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHH----HH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999998 7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC
Q psy8684 90 EMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA 166 (226)
Q Consensus 90 ~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~ 166 (226)
+++++++++.++++++++++.++ +||++++|+||||+ ++|+||.+||.|++.+++++|+|+|+++++++||+.|++
T Consensus 78 ~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (219)
T 1iru_N 78 GDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEK 156 (219)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEEET-TEEEEEEECSSCCEEECSEEECTTHHHHTHHHHHHHHTS
T ss_pred HcCCCCCHHHHHHHHHHHHHHhcccCCCceEEEEEEEEEC-CCCEEEEECCCCCeEECCeEEECccHHHHHHHHHhhcCC
Confidence 89999999999999999998764 69999999999998 699999999999999999999999999999999999999
Q ss_pred --CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684 167 --NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221 (226)
Q Consensus 167 --~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~ 221 (226)
+||++||++++++||..+.++|..+++++++++|+++| + +.++++||+..|.
T Consensus 157 ~~~mt~eea~~l~~~al~~~~~~d~~sg~~i~v~vi~~~g-~--~~~~~~~i~~~~~ 210 (219)
T 1iru_N 157 QPVLSQTEARDLVERCMRVLYYRDARSYNRFQTATVTEKG-V--EIEGPLSTETNWD 210 (219)
T ss_dssp CSCCCHHHHHHHHHHHHHHHHHHBTTCCSCEEEEEEETTE-E--EEEEEECCCCCCG
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCcCCCcEEEEEEcCCC-E--EEcCCeeccchhh
Confidence 99999999999999999999999999999999999998 4 5789999999874
No 13
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=100.00 E-value=2.6e-48 Score=323.39 Aligned_cols=206 Identities=20% Similarity=0.241 Sum_probs=195.3
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++.++ +++.+||++|++||+|++||..+|++.+.++++.+++.|+ ++
T Consensus 20 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 94 (242)
T 1ryp_E 20 LEAIKLGSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHARTAAVTHN----LY 94 (242)
T ss_dssp HHHHTTSCCEEEEECSSCEEEEEECCCSSTTBC-GGGCCCEEEEETTEEEEEEESGGGHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCCEEEEEECCEEEEEEeecCCCcCcc-CccCCceEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH----HH
Confidence 678999999999999999999999999998766 8899999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHH
Q psy8684 91 MNEPPLVYRAANLFQKIFRSN-----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGY 159 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~-----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~ 159 (226)
++++++++.+++.+++++|.+ .|||++++|+||||++++|+||.+||.|++.+++++|+|+|+.+++++
T Consensus 95 ~~~~~~v~~la~~l~~~~~~~t~~~~~~~~l~~RP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~ 174 (242)
T 1ryp_E 95 YDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAE 174 (242)
T ss_dssp HSSCCCHHHHHHHHHTTTTCCBSSCTTSCCCBSSCCSEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHhccccCcccccccCcceEEEEEEEEeCCCCCEEEEECCCCCEeccCEEEECCCCHHHHHH
Confidence 999999999999999999875 569999999999995579999999999999999999999999999999
Q ss_pred HhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 160 VDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 160 Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
|++.|+++||++||++++++||..+.++ ..++++++|++|+++| . ++.++++||++++..+.
T Consensus 175 Le~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~-~-~~~~~~~ei~~~~~~~~ 236 (242)
T 1ryp_E 175 LLNEWHSSLTLKEAELLVLKILKQVMEE-KLDENNAQLSCITKQD-G-FKIYDNEKTAELIKELK 236 (242)
T ss_dssp HHHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEEETTT-E-EEECCHHHHHHHHHHHH
T ss_pred HHHhhccCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEECCC-C-eEECCHHHHHHHHHHHh
Confidence 9999999999999999999999999998 5678999999999999 6 78899999999998763
No 14
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Probab=100.00 E-value=2.5e-48 Score=326.89 Aligned_cols=210 Identities=17% Similarity=0.246 Sum_probs=199.1
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|||+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 100 (261)
T 1iru_C 25 MEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLTNELRLIAQRYL----LQ 100 (261)
T ss_dssp HHHHTTSCCEEEEBCSSEEEEEECCCCCCTTBCCCSSCSSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHhcCCcEEEEEeCCEEEEEEecccCCcccccCCCCccEEEecCCEEEEEeEcHHHHHHHHHHHHHHHHHHH----HH
Confidence 57899999999999999999999999999988888789999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++++++++|.++ +||++++|+||||+.++|+||.+||.|++.+++++|+|+|+.+++++|++.|+
T Consensus 101 ~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (261)
T 1iru_C 101 YQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYK 180 (261)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTTBSSCCCCCEEEEEEEEETTTEEEEEEEETTTEEEECSEEEESTTTTHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHhccccCcCcceEEEEEEEEeCCCCcEEEEECCCceEEeeeeEEeCcccHHHHHHHHHhhc
Confidence 9999999999999999999875 59999999999997578999999999999999999999999999999999999
Q ss_pred C-CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe-EEEEeChhhHhhHhhccC
Q psy8684 166 A-NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM-EKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 166 ~-~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~-~~~~l~~~ei~~~~~~~~ 224 (226)
+ +||++||++++++||..+.++|..++++++|++|+++|+. .++.|+++||+.++..+.
T Consensus 181 ~~~ms~eeA~~la~~al~~~~~~d~~sg~~i~v~vi~~~~~~~~~~~l~~~ei~~~l~~~~ 241 (261)
T 1iru_C 181 EGEMTLKSALALAIKVLNKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQLIKKHE 241 (261)
T ss_dssp TTCCCHHHHHHHHHHHHHHSSSCTTCCSTTCEEEEEECCSSSCEEEECCHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEcCCCeeeEEECCHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999998722 378899999999998774
No 15
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Probab=100.00 E-value=1.9e-47 Score=310.54 Aligned_cols=199 Identities=24% Similarity=0.402 Sum_probs=191.6
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (204)
T 1iru_L 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLARQCRIYE----LRNKERISV 76 (204)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCCEEEcCcccceEEcCCCEEEEccCcHHHHHHHHHHHHHHHHHHH----HHHCCCCCH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
+.+++++++++|.+|. ||++++|+||||+ .||+||.+||+|++.++++.|+|+|+++++++||+.|+++||++||+++
T Consensus 77 ~~la~~l~~~~~~~r~~~~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~eea~~l 155 (204)
T 1iru_L 77 AAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDSEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDL 155 (204)
T ss_dssp HHHHHHHHHHHHTTTTSCCCBEEEEEEECS-SSEEEEEEESSSCEEECSEEEESTTHHHHHHHHHTTCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeeEEEEEEEEeC-CCCEEEEECCCCcEEEeCCEEEEcCHHHHHHHHhccCCCCCCHHHHHHH
Confidence 9999999999999875 8999999999998 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+++||..+.++|..+++++++++|+++| + +.++++||++++.++.
T Consensus 156 ~~~al~~~~~rd~~s~~~i~v~vi~~~g-~--~~l~~~ei~~~~~~~~ 200 (204)
T 1iru_L 156 ARRAIYQATYRDAYSGGAVNLYHVREDG-W--IRVSSDNVADLHEKYS 200 (204)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEECSSC-E--EEEEEEEHHHHHHHHT
T ss_pred HHHHHHHHHHhCccCCCceEEEEEeCCc-e--EEeCHHHHHHHHHHhc
Confidence 9999999999999899999999999998 4 5799999999998764
No 16
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L 1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K* 2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K* 3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Probab=100.00 E-value=8.3e-48 Score=314.42 Aligned_cols=200 Identities=21% Similarity=0.355 Sum_probs=191.6
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (212)
T 1ryp_L 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLGSQCRLHE----LREKERISV 76 (212)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEEETTEEEECCBCHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred CcEEEEEeCCEEEEEEcCCcccCCeEecCcccceeeeCCcEEEEccccHHHHHHHHHHHHHHHHHHH----HHcCCCCCH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccC-CceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~-p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
+.+++++++++|.+++ ||++++|+||||++++|+||.+||+|++.++++.|+|+|+++++++|++.|+++||++||+++
T Consensus 77 ~~la~~l~~~~~~~~~~p~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea~~l 156 (212)
T 1ryp_L 77 AAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYL 156 (212)
T ss_dssp HHHHHHHHHHHHHTTTSCCCBEEEEEEEETTTEEEEEEEETTCCEEECSEEEESTTHHHHHHHHHHHCCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhCCCCceEEEEEEEEeCCCCCEEEEEcCCceeEecCCEEEcCCHHHHHHHHHhhCCCCCCHHHHHHH
Confidence 9999999999999876 999999999999657999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+++||..+.++|..+++++++++|+++| ++.++++||++++.+++
T Consensus 157 a~~al~~~~~rd~~s~~~i~v~vi~~~g---~~~~~~~ei~~~~~~~~ 201 (212)
T 1ryp_L 157 GKRSILAAAHRDAYSGGSVNLYHVTEDG---WIYHGNHDVGELFWKVK 201 (212)
T ss_dssp HHHHHHHHHHHBTTCCSEEEEEEEETTE---EEEEEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCceEEEEEcCCc---eEEECHHHHHHHHHHHH
Confidence 9999999999999999999999999998 45799999999977654
No 17
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Probab=100.00 E-value=3.9e-48 Score=322.21 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=193.9
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|||+|||+++||||||+|+|.++|.++ +++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 102 (241)
T 1iru_E 28 IEAIKLGSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKARVETQNHW----FT 102 (241)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEEECCCCCTTBC-TTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCcEEEEEcCCEEEEEEecccCCcCcC-ccccceEEEEcCCEEEEEeeChHHHHHHHHHHHHHHHHHH----HH
Confidence 678999999999999999999999999998776 8899999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhc----------cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHH
Q psy8684 91 MNEPPLVYRAANLFQKIFRSN----------EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYV 160 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~----------~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~L 160 (226)
++++++++.+++++++++|.| .|||++++|+||||. ++|+||.+||.|++.+++++|+|+|+++++++|
T Consensus 103 ~~~~~~v~~~a~~l~~~~~~y~~~~~~~~l~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~L 181 (241)
T 1iru_E 103 YNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSL 181 (241)
T ss_dssp HSSCCCHHHHHHHHHTTTTCBCSTTCCSSCBSSCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHhccccccccccccceEEEEEEEEeC-CCCEEEEECCCCcEEecceEEECCCcHHHHHHH
Confidence 999999999999999999776 459999999999995 899999999999999999999999999999999
Q ss_pred hhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684 161 DKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 161 e~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~ 223 (226)
|+.|+++||++||++++++||..+.++ ..++++++|.+|+++| . ++.++++||++++..+
T Consensus 182 e~~~~~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~-~-~~~l~~~ei~~~~~~~ 241 (241)
T 1iru_E 182 QELYHKSMTLKEAIKSSLIILKQVMEE-KLNATNIELATVQPGQ-N-FHMFTKEELEEVIKDI 241 (241)
T ss_dssp HHHCCTTCCHHHHHHHHHHHHHHHCSS-CCCTTSEEEEEECSSS-C-CEECCHHHHHHHHTTC
T ss_pred HHHhccCCCHHHHHHHHHHHHHHHhhc-cCCCCCEEEEEEECCC-C-eEECCHHHHHHHHHhC
Confidence 999999999999999999999999998 6679999999999999 5 7889999999999764
No 18
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_N
Probab=100.00 E-value=1.3e-47 Score=310.33 Aligned_cols=198 Identities=41% Similarity=0.738 Sum_probs=189.5
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++|++++++|..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (199)
T 3unf_N 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAAYQLELHG----LELEEPPLV 76 (199)
T ss_dssp CEEEEEECSSCEEEEECCCEEETTEEEESSCCCEEEEETTEEEEECSCHHHHHHHHHHHHHHHHHHH----HHTTSCCCH
T ss_pred CeEEEEEeCCeEEEEECCcccCCceeEccccCceEEcCCCEEEEecccHHHHHHHHHHHHHHHHHHH----HHhCCCCCH
Confidence 7999999999999999999999989999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKKQECIDF 176 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~l 176 (226)
+.+++++++++|++++||++++|+||||++++|+||. |+|++. +.+++++|+|+++++++||+.|+++||++||+++
T Consensus 77 ~~~a~~l~~~l~~~~~p~~v~~lvaG~D~~~~p~ly~--p~G~~~~~~~~~~~Gsgs~~a~~~Le~~~~~~ms~eea~~l 154 (199)
T 3unf_N 77 LAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYG--TMGGMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRF 154 (199)
T ss_dssp HHHHHHHHHHHHHTTTTCCCCEEEEEEETTTEEEEEE--CGGGCCEECSEEEEEGGGGGGHHHHHHHCCSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCcEEEE--ECCCceecCCEEEEccCHHHHHHHHHhhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999867899999 999865 5667778999999999999999999999999999
Q ss_pred HHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 177 IKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 177 a~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
+++||..+.++|..++++++|++|+++| +.++.|+++||+.+|++
T Consensus 155 a~~al~~~~~~d~~sg~~i~v~vi~~~g-~~~~~l~~~ei~~~~~~ 199 (199)
T 3unf_N 155 TTNAITLAMNRDGSSGGVIYLVTITAAG-VDHRVILGDELPKFYDE 199 (199)
T ss_dssp HHHHHHHHHHHCTTCCSCEEEEEECSSC-EEEEEECGGGSCCCCCC
T ss_pred HHHHHHHHHHhccccCCCeEEEEEcCCC-EEEEEcCcccCcccccC
Confidence 9999999999999999999999999999 88999999999998864
No 19
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator 11S, hydrolase-HYD activator complex; 1.90A {Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A 1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A 3jse_A 3jtl_A
Probab=100.00 E-value=4.7e-48 Score=320.18 Aligned_cols=201 Identities=18% Similarity=0.328 Sum_probs=191.6
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 102 (233)
T 1yar_A 28 REAVKKGSTALGMKFANGVLLISDKKVRSR-LIEQNSIEKIQLIDDYVAAVTSGLVADARVLVDFARISAQQEK----VT 102 (233)
T ss_dssp HHHHTTSCCEEEEEETTEEEEEECCCCCCT-TBCSTTCCSEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHhcCCcEEEEEECCEEEEEEeccCCcc-cccccccCeEEEecCCEEEEEeeCHHHHHHHHHHHHHHHHHHH----HH
Confidence 578999999999999999999999999995 6778899999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+|+++++++|.++ |||++++|+||||+ ++|+||.+||.|++.+++++|+|+|+++++++||+.|+
T Consensus 103 ~~~~~~v~~~a~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~-~gp~Ly~id~~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 181 (233)
T 1yar_A 103 YGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYK 181 (233)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTTBTTBCCCCEEEEEEEECS-SCEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred HCCCCCHHHHHHHHHHHHHHhcCcCCcCcceEEEEEEEEeC-CCCEEEEECCCCCEEeeeEEEEcCCcHHHHHHHHHHhc
Confidence 9999999999999999999775 49999999999998 78999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~ 220 (226)
++||++||++++++||..+.++|. +++++++++|+++| . ++.++++||++++
T Consensus 182 ~~~s~eea~~la~~al~~~~~~d~-s~~~i~v~vi~~~~-~-~~~~~~~ei~~~l 233 (233)
T 1yar_A 182 ENLPEKEAVTLGIKALKSSLEEGE-ELKAPEIASITVGN-K-YRIYDQEEVKKFL 233 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTSCSSC-CCCCCEEEEEETTS-C-CEECCHHHHHTTC
T ss_pred cCCCHHHHHHHHHHHHHHHhhccC-CCCcEEEEEEECCC-C-EEECCHHHHHhhC
Confidence 999999999999999999999998 68999999999998 4 6789999999875
No 20
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=6.7e-48 Score=324.42 Aligned_cols=205 Identities=21% Similarity=0.305 Sum_probs=195.0
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++ ++.+++.+||++|++||+|++||..+|++.++++++.+++.|+ ++
T Consensus 32 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~~-li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~r~~~~~y~----~~ 106 (264)
T 3h4p_A 32 REAVRRGTTAIGIACKDGVVLAVDRRITSK-LVKIRSIEKIFQIDDHVAAATSGLVADARVLIDRARLEAQIYR----LT 106 (264)
T ss_dssp HHHHHHSCCEEEECCSSEEEEEEECCCCST-TBCTTTCCCEEEEETTEEEEEEECSHHHHHHHTTHHHHHHHHH----HT
T ss_pred HHHHhcCCcEEEEEECCEEEEEEecCccCC-ccccCccccEEEecCcEEEEeccchHHHHHHHHHHHHHHHhhH----Hh
Confidence 689999999999999999999999999985 7788999999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++.+++++.+|+.+++++|.|+ +||++++|+||||+ +||+||.+||+|++.+++++|+|+|+.+++++|++.|+
T Consensus 107 ~~~~i~v~~la~~l~~~~~~yt~~~~~rP~~v~~lvaG~D~-~gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 185 (264)
T 3h4p_A 107 YGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYR 185 (264)
T ss_dssp TCSCCCHHHHHHHHHHHHHHTTSBSSCCCCSEEEEEEEEET-TEEEEEEECTTCCCEEESEEEESTTHHHHTTTHHHHCC
T ss_pred cCCCCCHHHHHHHHHHHHHHHhhccCCCCeeEEEEEEEEeC-CcCEEEEECCCceEEecCeEEECCCHHHHHHHHHHhcc
Confidence 9999999999999999998774 49999999999997 78999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
++||++||++++++||..+.++ .++++++|++|++++ ..++.++++||+.++..+.
T Consensus 186 ~~ms~eea~~la~~al~~a~~~--~sg~~iev~vi~~~~-~~~~~l~~~ei~~~~~~~~ 241 (264)
T 3h4p_A 186 DDITLDEGLELAITALTKANED--IKPENVDVCIITVKD-AQFKKIPVEEIKKLIEKVK 241 (264)
T ss_dssp TTCCSHHHHHHHHHHHHHHSSS--CCTTSEEEEEEETTT-TEEEECCTTTTGGGTTTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHhc--cCCCeEEEEEEEeCC-CcEEECCHHHHHHHHHHHH
Confidence 9999999999999999999987 688999999999987 5688999999999998875
No 21
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=100.00 E-value=4.6e-47 Score=315.72 Aligned_cols=205 Identities=18% Similarity=0.289 Sum_probs=193.7
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 22 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 97 (241)
T 1ryp_D 22 LEAVKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILIEKARVEAQSHR----LT 97 (241)
T ss_dssp HHHHTTSCCEEEEECSSCEEEEEECCCSSCCBCTTTSCCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeeccCccCccccCCcCcEEEecCCEEEEEeecHHHHHHHHHHHHHHHHHHH----HH
Confidence 68999999999999999999999999999887777799999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCC-CCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTV-KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW 164 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~-~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~ 164 (226)
++++++++.+|+++++++|.++ |||++++|+||||++ ++|+||.+||.|++.+++++|+|+|+++++++|++.|
T Consensus 98 ~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~ 177 (241)
T 1ryp_D 98 LEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNY 177 (241)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTSSTTBCCCSEEEEEEECCTTCCSCEEEEECTTSCEEEBSEEEESTTHHHHHHHHHTTC
T ss_pred HCCCCCHHHHHHHHHHHHHHHccCCCCCCcceeeEEEEEcCCCCCeeEEEECCCCCEEEeeeEEECCCcHHHHHHHHHhh
Confidence 9999999999999999999763 599999999999975 7899999999999999999999999999999999999
Q ss_pred ---cCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 165 ---RANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 165 ---~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+++||++||++++++||..+.+ .++++++|++|++++ . ++.++++||++++..+.
T Consensus 178 ~~~~~~ms~eea~~l~~~al~~~~~---~sg~~i~v~vi~~~~-~-~~~l~~~ei~~~~~~~~ 235 (241)
T 1ryp_D 178 DRKEPPATVEECVKLTVRSLLEVVQ---TGAKNIEITVVKPDS-D-IVALSSEEINQYVTQIE 235 (241)
T ss_dssp CTTSCCCSHHHHHHHHHHHHHHHHC---SCSTTEEEEEEETTT-E-EEECCHHHHHHHHHHHT
T ss_pred hcccCCCCHHHHHHHHHHHHHHHhc---CCCCcEEEEEEECCC-c-EEECCHHHHHHHHHHHh
Confidence 9999999999999999999986 578999999999997 3 67899999999998764
No 22
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 3nzw_H* 3nzx_H* 4b4t_2
Probab=100.00 E-value=6e-47 Score=317.82 Aligned_cols=193 Identities=29% Similarity=0.512 Sum_probs=178.9
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
-|.++||+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+
T Consensus 19 ~~~~~kav~~GtTivgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~-- 96 (261)
T 3nzj_H 19 SHTQPKATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS-- 96 (261)
T ss_dssp -----------CCEEEEEETTEEEEEEECCEEETTEEEETTCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH--
T ss_pred CCCCCcccccCceEEEEEECCEEEEEEcCCcccCCeeccCCcceEEEEcCCEEEEeccCHHHHHHHHHHHHHHHHHhH--
Confidence 345689999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCHHHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcC
Q psy8684 87 GYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA 166 (226)
Q Consensus 87 ~~~~~~~~~~~~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~ 166 (226)
++++++++++.+++++++.++++++||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|++
T Consensus 97 --~~~~~~~~v~~~a~~l~~~l~~~~~~~gv~llvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~ 173 (261)
T 3nzj_H 97 --LYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQ 173 (261)
T ss_dssp --HHHTSCCCHHHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCS
T ss_pred --HhhCCCCCHHHHHHHHHHHHHHhcCcccEEEEEEEEeC-CCCEEEEECCCccEEecCeEEeccchHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999998 789999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC
Q psy8684 167 NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK 204 (226)
Q Consensus 167 ~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g 204 (226)
+||++||++++++||..+.++|..++++++|++|+++|
T Consensus 174 ~ms~eEA~~la~~al~~a~~rD~~sg~~iev~vI~kdg 211 (261)
T 3nzj_H 174 DLTKEEAIKLASDAIQAGIWNDLGSGSNVDVCVMEIGK 211 (261)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHCTTCCSCEEEEEEETTS
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCCCCcEEEEEEECCC
Confidence 99999999999999999999999999999999999998
No 23
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug development, protein degradation, hydrolase-hydrolase inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB: 3unh_H
Probab=100.00 E-value=6.6e-47 Score=313.17 Aligned_cols=196 Identities=23% Similarity=0.426 Sum_probs=188.8
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 TT~vgi~~kdgVVlaaD~r~t~g~~v~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (234)
T 3unf_H 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAASKMELHA----LSTGREPRV 76 (234)
T ss_dssp CEEEEEECSSEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHCSCCCH
T ss_pred CeEEEEEeCCEEEEEECCCcccCCEeccCccccEEEecCCEEEEecccHHHHHHHHHHHHHHHHhhH----HhcCCCCCH
Confidence 7999999999999999999999988889999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI 177 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la 177 (226)
+.++++++++++++++||++++|+||||+ .||+||.+||+|++.++++.|+|+|+.+++++||+.|+++|+++||++++
T Consensus 77 ~~la~~l~~~l~~~~~p~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 3unf_H 77 ATVTRILRQTLFRYQGHVGASLVVGGVDL-NGPQLYEVHPHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELL 155 (234)
T ss_dssp HHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEEETTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccEEEEEEEEeC-CCCEEEEECCCCCEEeccEEEEcCCchhhHHHHHhccCCCCCHHHHHHHH
Confidence 99999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684 178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221 (226)
Q Consensus 178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~ 221 (226)
++||..+.++|..+++++++++|+++| + +.+++.|++.-|.
T Consensus 156 ~~al~~~~~~D~~sg~~iev~vi~~dg-~--~~l~~~~i~~~~~ 196 (234)
T 3unf_H 156 VEAITAGILSDLGSGGNVDACVITAGG-A--KLQRALSTPTEPV 196 (234)
T ss_dssp HHHHHHHHHHBTTCCSCEEEEEEESSC-E--EEEEEEECCCCCC
T ss_pred HHHHHHHHhhcCCCCCcEEEEEEECCC-E--EEeCceecccccc
Confidence 999999999999999999999999998 4 5789998887664
No 24
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, hydrolase; 3.10A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Probab=100.00 E-value=1.2e-46 Score=320.63 Aligned_cols=208 Identities=19% Similarity=0.255 Sum_probs=195.2
Q ss_pred CCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc
Q psy8684 10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR 89 (226)
Q Consensus 10 ~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~ 89 (226)
+.+|+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||+|+++|..+|++.++++++.+++.|+ +
T Consensus 58 a~~Av~~GtTiVgIk~kdGVVlAaD~r~t~G~li~~~~~~KI~~I~~~i~~~~aG~~aD~~~l~~~~r~~~~~y~----~ 133 (294)
T 1q5r_H 58 SGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE----K 133 (294)
T ss_dssp --CCSCBCCCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEEBHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHHhcCceEEEEEECCEEEEEEcCccccCceeecCCcceEEEECCcEEEEEeecHHHHHHHHHHHHHHHHHhh----H
Confidence 589999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcc----CCceeEEEEEEEeCCCC-----eEEEEECCCCceeee--eeEEecCChHHHHH
Q psy8684 90 EMNEPPLVYRAANLFQKIFRSNE----GSFKAAIIIAGWDTVKG-----GQVYALPASGVLTRQ--NCAVGGSGSSYILG 158 (226)
Q Consensus 90 ~~~~~~~~~~~a~~l~~~~~~~~----~p~~v~~liaG~d~~~~-----p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~ 158 (226)
+++++++++.+++.+++++|.++ +||++++|+||||.+++ |+||.+||.|++.++ +++|+|+|++++++
T Consensus 134 ~~g~~isv~~la~~la~~l~~~~~~~~rp~~v~lLvaG~D~~~g~~~~~p~Ly~iDp~G~~~e~~~~~~AiGsgs~~a~~ 213 (294)
T 1q5r_H 134 IEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKS 213 (294)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEEECTTCSCTTSCEEEEEECSSSCEEECCSSEEEESTTHHHHHH
T ss_pred hhCCCCCHHHHHHHHHHHHHHHHhhhcCCcceEEEEEEEeCCCCcCCCCCEEEEECCCCeEEecCCCeEEEecCcHHHHH
Confidence 99999999999999999998763 69999999999998657 999999999999988 99999999999999
Q ss_pred HHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 159 YVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL--I-----NIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 159 ~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~--i-----~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+|++.|+++|+++||++++++||..+.++|..+++. + +|++|+++| + +.++++||++++.++.
T Consensus 214 ~Le~~y~~~ms~eEAi~la~~aL~~a~~rD~~sG~~~~ir~i~~ev~vI~~~g-~--~~l~~~ei~~~l~~i~ 283 (294)
T 1q5r_H 214 ALKKIYSPDSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG-A--VHVSEETTSELARRIV 283 (294)
T ss_dssp HHHHHCCSSCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE-E--EECCHHHHHHHHHHHC
T ss_pred HHHHhccCCCCHHHHHHHHHHHHHHHHhhccccCCchhhcccCCEEEEEECCC-E--EEcCHHHHHHHHHHHH
Confidence 999999999999999999999999999999987654 6 999999988 4 5799999999998775
No 25
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Probab=100.00 E-value=4.9e-46 Score=304.06 Aligned_cols=194 Identities=21% Similarity=0.276 Sum_probs=184.0
Q ss_pred cccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN 92 (226)
Q Consensus 13 ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 92 (226)
-+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~ 80 (213)
T 1iru_M 5 YVFNGGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKIIEARLKMYK----HSNN 80 (213)
T ss_dssp CCCCCCEEEEEEETTEEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHS
T ss_pred ccCCCCcEEEEEeCCEEEEEECCCcccCCEEecCCCCcEEEcCCCEEEEccccHHHHHHHHHHHHHHHHHHH----HhcC
Confidence 367999999999999999999999999998888999999999999999999999999999999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh--------
Q psy8684 93 EPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE-------- 163 (226)
Q Consensus 93 ~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~-------- 163 (226)
++++++.+|++++++++..+ +||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+.
T Consensus 81 ~~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~g~p~Ly~id~~G~~~~~~~~aiGsg~~~a~~~Le~~~~~~~~~~ 160 (213)
T 1iru_M 81 KAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFDPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQN 160 (213)
T ss_dssp SCCCHHHHHHHHHHHHHHTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTTCCSCSS
T ss_pred CCCCHHHHHHHHHHHHHhhCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEECCEEEEeeCHHHHHHHHhhccccccccc
Confidence 99999999999999998665 699999999999975679999999999999999999999999999999999
Q ss_pred -hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684 164 -WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF 211 (226)
Q Consensus 164 -~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l 211 (226)
|+++||++||++++++||..+.++|..++++++|++|+++| +..+.+
T Consensus 161 ~~~~~~s~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~ 208 (213)
T 1iru_M 161 VEHVPLSLDRAMRLVKDVFISAAERDVYTGDALRICIVTKEG-IREETV 208 (213)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHHHBTTSCSEEEEEEEETTE-EEEEEE
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHHhCCccCCcEEEEEEcCCC-eEEEEe
Confidence 88899999999999999999999999999999999999999 765544
No 26
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M* 1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L* 2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L* 3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Probab=100.00 E-value=6.2e-46 Score=305.40 Aligned_cols=194 Identities=22% Similarity=0.304 Sum_probs=184.7
Q ss_pred cccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN 92 (226)
Q Consensus 13 ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 92 (226)
.+++|+|+|||+++||||||+|+|.++|.++.+++.+||++|+++|++++||.++|++.+.++++.+++.|+ ++++
T Consensus 5 ~v~~Gtt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~ 80 (222)
T 1ryp_M 5 YGDNGGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRFKNSVKWYH----FDHN 80 (222)
T ss_dssp CCCCCCEEEEEECSSCEEEEEECCEEETTEEEESCCCCCEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHTT
T ss_pred cccCCccEEEEEeCCEEEEEEecccccCCEecCCCcCcEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHH----HHcC
Confidence 578999999999999999999999999998899999999999999999999999999999999999999999 9999
Q ss_pred -CCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh-------
Q psy8684 93 -EPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE------- 163 (226)
Q Consensus 93 -~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~------- 163 (226)
++++++.+|++++++++.+| +||++++|+||||.+++|+||.+||.|++.+++++|+|+|+.+++++||+.
T Consensus 81 ~~~~~v~~la~~l~~~ly~~r~~P~~v~~ivaG~D~~g~p~Ly~~dp~G~~~~~~~~a~Gsg~~~a~~~Le~~~~~~~~~ 160 (222)
T 1ryp_M 81 DKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSFDPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQY 160 (222)
T ss_dssp TCCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTSCEEEEEECTTSCEEEESEEEEETTHHHHHHHHHHHTSCTTCB
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCceEEEEEEEEcCCCCeEEEEECCCcCEEecCEEEEcCcHHHHHHHHhccccccccc
Confidence 99999999999999998765 599999999999976679999999999999999999999999999999998
Q ss_pred ----------hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEe
Q psy8684 164 ----------WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVF 211 (226)
Q Consensus 164 ----------~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l 211 (226)
|+++||++||++++++||..+.++|..++++++|++|+++| +..+.+
T Consensus 161 ~~~~~~~~~~~~~~~s~eeA~~la~~al~~a~~rd~~sg~~i~v~vi~~~g-~~~~~~ 217 (222)
T 1ryp_M 161 EPGTNGKVKKPLKYLSVEEVIKLVRDSFTSATERHIQVGDGLEILIVTKDG-VRKEFY 217 (222)
T ss_dssp CTTSTTCSBCCCCCCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTE-EEEEEE
T ss_pred ccccccccccCCCCCCHHHHHHHHHHHHHHHHHhcccCCCcEEEEEEcCCC-eEEEEe
Confidence 88999999999999999999999999999999999999999 766554
No 27
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease, NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M* 3nzj_M* 3nzw_M* 3nzx_M*
Probab=100.00 E-value=6.5e-47 Score=318.95 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=194.2
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcccc-
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYR- 89 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~- 89 (226)
.+++.+|+|+|||+++||||||+|+|.+.|.++.+++.+||++|++||+|++||..+|++.|.++++.+++.|+ +
T Consensus 35 ~~av~~GtT~vgi~~~dgVVlAaD~r~t~g~~i~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~~~----~~ 110 (266)
T 1g0u_M 35 QQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIERLLKDLVTENA----YD 110 (266)
T ss_dssp CCCCEEECCEEEEEETTEEEEEEECCEEETTEEEECCCCCEEECTTSEEEEEEEEHHHHHHHHHHHHHHHHHHH----TT
T ss_pred ccCcccCceEEEEEECCEEEEEEcCCcccCceeecCCcCcEEEcCCCEEEEeccCHHHHHHHHHHHHHHHHHhh----hc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999 8
Q ss_pred ----ccCCCCCHHHHHHHHHHHHHhcc---CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhh
Q psy8684 90 ----EMNEPPLVYRAANLFQKIFRSNE---GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK 162 (226)
Q Consensus 90 ----~~~~~~~~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~ 162 (226)
+++++++++.++++++++++.++ +||++++|+||||.+++|+||.+||.|++.+++++|+|+|+.+++++||+
T Consensus 111 ~~~~~~~~~~~v~~la~~l~~~ly~~r~~~~P~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~ 190 (266)
T 1g0u_M 111 NPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRK 190 (266)
T ss_dssp CTTTTTTTSCCHHHHHHHHHHHHHHHHHTTCCCCEEEEEEEECTTSCEEEEEEETTCCEECCSEEECTHHHHTHHHHHTT
T ss_pred cchhhcCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCEEEEEECCCCCEEeCCEEEEccCHHHHHHHHHH
Confidence 89999999999999999998765 69999999999998569999999999999999999999999999999999
Q ss_pred hhcC-----CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC-CCeEEEEeChhhHhhH-h
Q psy8684 163 EWRA-----NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG-KPMEKLVFTQEEVQHF-F 220 (226)
Q Consensus 163 ~~~~-----~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~-g~~~~~~l~~~ei~~~-~ 220 (226)
.|++ +||++||++++++||..+.++|..++++++|++|+++ | ++.++++||+++ |
T Consensus 191 ~~~~~~~~~~ms~eeA~~la~~al~~a~~rd~~sg~~i~v~vI~k~~g---~~~~~~~ei~~~~w 252 (266)
T 1g0u_M 191 VVDRESDIPKTTVQVAEEAIVNAMRVLYYRDARSSRNFSLAIIDKNTG---LTFKKNLQVENMKW 252 (266)
T ss_dssp TCSSGGGGGGCCHHHHHHHHHHHHHHHHHHBTTCCSEEEEEEEETTTE---EEEEEEEECCCCCC
T ss_pred hhcccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEECCCC---eEEcCHHHhhhhhh
Confidence 9999 9999999999999999999999999999999999999 7 457899999998 6
No 28
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=100.00 E-value=5.3e-47 Score=317.59 Aligned_cols=206 Identities=11% Similarity=0.113 Sum_probs=193.6
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++.++ .++.+||++|++||+|++||..+|++.+.++++.+++.|+ ++
T Consensus 27 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~-~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 101 (254)
T 1iru_G 27 MKAVENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLADIAREEASNFR----SN 101 (254)
T ss_dssp HHHHHTSCCEEEEECSSBEEEEEEEECSCTTBC-TTTTCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHhcCCCEEEEEECCEEEEEEecccCCCCcC-cCcCCcEEEECCCEEEEEecChHHHHHHHHHHHHHHHHHH----HH
Confidence 689999999999999999999999999998777 4789999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++++++++|.++ +||++++|+||||+.++|+||.+||.|++.+++++|+|+|+++++++|++.|+
T Consensus 102 ~~~~~~v~~la~~l~~~~~~~~~~~~~rP~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 181 (254)
T 1iru_G 102 FGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQM 181 (254)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTSBSSBCCCSEEEEEEEEETTTEEEEEEECTTCCEEEBSEEEESTTHHHHHHHHTTSCG
T ss_pred hCCCCCHHHHHHHHHHHHHHhccccccccceEEEEEEEEeCCCCcEEEEEcCCCCEEeeeeEEecCccHHHHHHHHHhcc
Confidence 9999999999999999999885 59999999999995589999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCC--CCeEEEEeChhhHhhHhhcc
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENG--KPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~--g~~~~~~l~~~ei~~~~~~~ 223 (226)
++||++||+++++++|..+.++|..++.+++|++|+++ | .++.++++||++++...
T Consensus 182 ~~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g--~~~~l~~~~i~~~~~~~ 239 (254)
T 1iru_G 182 KEMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNG--RHEIVPKDIREEAEKYA 239 (254)
T ss_dssp GGCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTT--CCEECCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCC--CeEECCHHHHHHHHHHH
Confidence 99999999999999999998888767889999999987 4 25689999999998753
No 29
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Probab=100.00 E-value=6e-47 Score=316.27 Aligned_cols=205 Identities=15% Similarity=0.268 Sum_probs=193.1
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++ ++..++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 23 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 97 (248)
T 1iru_D 23 QEAVKKGSTAVGVRGRDIVVLGVEKKSVAK-LQDERTVRKICALDDNVCMAFAGLTADARIVINRARVECQSHR----LT 97 (248)
T ss_dssp HHHHHTSCCEEEECCSSEEEEEECCCCCCS-SSCGGGGCSEEESSSSCEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCCEEEEEeCCEEEEEEeeccccc-CccCCCCCcEEEEcCCEEEEEeecHHHHHHHHHHHHHHHHHHH----HH
Confidence 678999999999999999999999999997 6777899999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++++++++|.++ |||++++|+||||++++|+||.+||.|++.+++++|+|+|++.++++|++.|+
T Consensus 98 ~~~~~~v~~la~~l~~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 177 (248)
T 1iru_D 98 VEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYT 177 (248)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEECSSSCEEEEEECTTSCEEEBSEEEESTTHHHHHHHHTTTCC
T ss_pred HCCCCCHHHHHHHHHHHHHHHhccCCcccccEEEEEEEEeCCCCcEEEEEcCCCcEEEeeEEEECCCcHHHHHHHHHhhc
Confidence 9999999999999999998874 59999999999995579999999999999999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 166 ANM--KKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 166 ~~~--s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
++| |++||++++++||..+.+ .++++++|++|+++| . ++.++++||++++..+++
T Consensus 178 ~~m~~s~eea~~la~~al~~~~~---~sg~~i~v~vi~~~g-~-~~~l~~~ei~~~~~~~~~ 234 (248)
T 1iru_D 178 DEAIETDDLTIKLVIKALLEVVQ---SGGKNIELAVMRRDQ-S-LKILNPEEIEKYVAEIEK 234 (248)
T ss_dssp SSTTCSHHHHHHHHHHHHHTTSC---TTSTTCCEEEEESSS-C-EECCCHHHHHHHTTTTTT
T ss_pred ccccCCHHHHHHHHHHHHHHHHc---CCCCcEEEEEEECCC-c-EEECCHHHHHHHHHHHHh
Confidence 999 999999999999999986 368999999999998 3 678999999999988753
No 30
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B 1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A* 2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A* 3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Probab=100.00 E-value=2.3e-46 Score=313.13 Aligned_cols=207 Identities=18% Similarity=0.300 Sum_probs=191.7
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHh-hhhcccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDL-DVAYGYR 89 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~-~~~~~~~ 89 (226)
.+|+++|+|+|||+++||||||+|+|.+ +.++.+++.+||++|++||+|++||..+|++.+.++++.+++. |+ .
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~-~~l~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~~----~ 99 (250)
T 1ryp_B 25 LTAVKQGVTSLGIKATNGVVIATEKKSS-SPLAMSETLSKVSLLTPDIGAVYSGMGPDYRVLVDKSRKVAHTSYK----R 99 (250)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCCS-CSSBCGGGCCSSEEEETTEEEEEEECHHHHHHHHHHHHHHHHHTTH----H
T ss_pred HHHHHcCCcEEEEEECCEEEEEEeccCC-CccccCcccCceEEECCCEEEEeeeCHHHHHHHHHHHHHHHHHHHH----H
Confidence 6889999999999999999999999998 5888889999999999999999999999999999999999998 88 8
Q ss_pred ccCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhh
Q psy8684 90 EMNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW 164 (226)
Q Consensus 90 ~~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~ 164 (226)
.++.+++++.+++.++++++.++ +||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+.|
T Consensus 100 ~~~~~~~~~~l~~~~a~~~~~~~~~~~~rp~~v~~lvaG~D~~~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~ 179 (250)
T 1ryp_B 100 IYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNGFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRW 179 (250)
T ss_dssp HHSSCCCHHHHHHHHHHHHHHTTTSBTBCCCCEEEEEEEEETTTEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHC
T ss_pred HhCCCCCHHHHHHHHHHHHHHHHhcCCcccceEEEEEEEEcCCCCcEEEEECCCCCEEeeceeEecCccHHHHHHHHHHh
Confidence 88999999998888888887653 5999999999999867899999999999999999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCC-------------CeEEEEeChhhHhhHhhcc
Q psy8684 165 RANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGK-------------PMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 165 ~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g-------------~~~~~~l~~~ei~~~~~~~ 223 (226)
+++||++||++++++||..+.+++. ++++++|++|++++ +..++.|+++||++++..+
T Consensus 180 ~~~ms~eea~~la~~al~~~~~~~~-sg~~i~v~vi~~~~~~~~~~~~~~~~~~~~~~~l~~~ei~~~l~~~ 250 (250)
T 1ryp_B 180 NDELELEDAIHIALLTLKESVEGEF-NGDTIELAIIGDENPDLLGYTGIPTDKGPRFRKLTSQEINDRLEAL 250 (250)
T ss_dssp CTTCCHHHHHHHHHHHHHHHCCSCC-STTTEEEEEECSCCGGGTSEESCSSCCCCSEEECCHHHHHHHHTTC
T ss_pred ccCCCHHHHHHHHHHHHHHHhcccc-CCCCEEEEEEEccccccccccccccCCCCCeEECCHHHHHHHHHhC
Confidence 9999999999999999999998865 78999999999862 1347899999999999764
No 31
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=100.00 E-value=5.2e-46 Score=310.27 Aligned_cols=204 Identities=20% Similarity=0.303 Sum_probs=191.0
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|||+|||+++||||||+|+|.+.+ ++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 28 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~-l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 102 (246)
T 1j2p_A 28 REAVKRGATAIGIKCKEGVILIADKRVGSK-LLEKDTIEKIYKIDEHICAATSGLVADARVLIDRARIEAQINR----LT 102 (246)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEECCCSCT-TBCGGGCCSEEECSSSEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCcEEEEEECCEEEEEEeccCCcc-ccccCccCcEEEECCCEEEEEeEccHHHHHHHHHHHHHHHHHH----HH
Confidence 578999999999999999999999999986 5568899999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++.+++++|.|+ |||++++|+|||| ++|+||.+||.|++.+++++|+|+|+++++++|++.|+
T Consensus 103 ~~~~~~v~~la~~l~~~~~~y~~~~~~rp~~v~~lvaG~D--~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 180 (246)
T 1j2p_A 103 YDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYR 180 (246)
T ss_dssp SSSCCCHHHHHHHHHHHHHHTTSBTTBCCCCEEEEEEEES--SSEEEEEECTTCCEEEBSEEEESTTHHHHHHHHHHHCC
T ss_pred hCCCCCHHHHHHHHHHHHHHHhcccCcccccEEEEEEEEC--CCCEEEEECCCceEEeeeEEEECCCcHHHHHHHHHHhc
Confidence 9999999999999999998774 4999999999999 68999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc-CCCCeEEEEeChhhHhhHhhccC
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE-NGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~-~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
++||++||++++++||..+.++ ..++++++|++|+ ++++ ++.++++||++++.+++
T Consensus 181 ~~ms~eea~~la~~al~~~~~~-~~sg~~i~v~vi~~~~~~--~~~l~~~ei~~~~~~~~ 237 (246)
T 1j2p_A 181 DDLSFDDAMVLGLVAMGLSIES-ELVPENIEVGYVKVDDRT--FKEVSPEELKPYVERAN 237 (246)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTS-CCCGGGEEEEEEETTTCC--CEECCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhhc-cCCCCcEEEEEEEcCCCc--eEECCHHHHHHHHHHHH
Confidence 9999999999999999999998 7788999999999 6542 56899999999988763
No 32
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Probab=100.00 E-value=2.6e-45 Score=298.10 Aligned_cols=194 Identities=19% Similarity=0.314 Sum_probs=182.7
Q ss_pred ccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCC
Q psy8684 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNE 93 (226)
Q Consensus 14 i~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~ 93 (226)
..+|+|+|||+++||||||+|+|.+++.++.+++.+||++|++|+++++||..+|++.+.++++.+++.|+ +++++
T Consensus 5 ~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~ 80 (205)
T 1iru_J 5 SYNGGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYE----LKEGR 80 (205)
T ss_dssp TSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEECSTTEEEECCSCHHHHHHHHHHHHHHHHHHH----HHSSS
T ss_pred cCCCCeEEEEEeCCEEEEEECCccccCCeEeecCCccEEEeCCCEEEEccccHHHHHHHHHHHHHHHHHHH----hhcCC
Confidence 46899999999999999999999999988888899999999999999999999999999999999999999 99999
Q ss_pred CCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeC-CCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCCH
Q psy8684 94 PPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDT-VKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMKK 170 (226)
Q Consensus 94 ~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~-~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s~ 170 (226)
+++++.++++++++++.++ .||++++|+||||+ +++|+||.+||.|++. +.+|+|+|+|+++++++||+.|+++||+
T Consensus 81 ~~~v~~la~~l~~~~y~~r~~P~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s~ 160 (205)
T 1iru_J 81 QIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDP 160 (205)
T ss_dssp CCCHHHHHHHHHHHHHTTTTSCCSCCCEEEEECTTSCCEEEEEECTTCCEEECSSEEEEETTHHHHHHHHHHHCCSSCCH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCCeEEEEECCCCCccccCCeeEeeeCHHHHHHHHhcccCCCCCH
Confidence 9999999999999997665 49999999999995 4789999999999985 4577999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684 171 QECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT 212 (226)
Q Consensus 171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~ 212 (226)
+||++++++||..+.++|..+++++++++|+++| +.++.++
T Consensus 161 eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~~ 201 (205)
T 1iru_J 161 DHLFETISQAMLNAVDRDAVSGMGVIVHIIEKDK-ITTRTLK 201 (205)
T ss_dssp HHHHHHHHHHHHHHGGGBTTSCSCEEEEEEESSB-EEEEEBC
T ss_pred HHHHHHHHHHHHHHHHhCcccCCceEEEEEcCCC-EEEEEee
Confidence 9999999999999999999999999999999999 8777664
No 33
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Probab=100.00 E-value=2.7e-46 Score=314.76 Aligned_cols=204 Identities=14% Similarity=0.193 Sum_probs=191.8
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++. .++.+||++|++||+|++||..+|++.+.++++.+++.|+ ++
T Consensus 26 ~~av~~Gtt~vgi~~~dgVVlaaD~r~~~gl---~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 98 (263)
T 1iru_F 26 MEAVKQGSATVGLKSKTHAVLVALKRAQSEL---AAHQKKILHVDNHIGISIAGLTADARLLCNFMRQECLDSR----FV 98 (263)
T ss_dssp HHHHHHSCCEEEEECSSEEEEEEECCCSSTT---BCCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCcEEEEEeCCEEEEEEeccccccc---ccchhcEEEEcCCEEEEEeCCHHHHHHHHHHHHHHHHHHH----HH
Confidence 5789999999999999999999999999974 2478999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++++++++|.+ .|||++++|+||||+ .||+||.+||+|++.+++++|+|+|+.+++++||+.|+
T Consensus 99 ~~~~i~v~~la~~l~~~l~~~t~~~~~RP~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~ 177 (263)
T 1iru_F 99 FDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMS 177 (263)
T ss_dssp HSSCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECSSSCEEEESEEEESTTHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHhhcccccccceEEEEEEEEcC-CCCEEEEECCCCCEEEeeEEEcCcccHHHHHHHHHHhc
Confidence 999999999999999999865 369999999999998 78999999999999999999999999999999999999
Q ss_pred C--CCCHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 166 A--NMKKQECIDFIKMGLSLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 166 ~--~~s~~eai~la~~~l~~~~~~d-~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+ +||++||++++++||..+.++| ..++++++|++|++++ . ++.++++||+.++..++
T Consensus 178 ~~~~ms~eea~~la~~al~~~~~rd~~~sg~~iev~vi~~~~-~-~~~l~~~ei~~~~~~~~ 237 (263)
T 1iru_F 178 EFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKDL-E-FTIYDDDDVSPFLEGLE 237 (263)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTSCTTCCCCTTTEEEEEEETTE-E-EEEECSGGGHHHHTTCC
T ss_pred ccCCCCHHHHHHHHHHHHHHHHhccccCCCCcEEEEEEECCC-C-eEECCHHHHHHHHHHHh
Confidence 8 9999999999999999999999 4788999999999985 2 67899999999998875
No 34
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E* 1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E* 3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E* 3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Probab=100.00 E-value=3.4e-46 Score=309.04 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=186.8
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+.+.. ++.+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 25 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~~l~---~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 97 (233)
T 1ryp_F 25 LEAIKQGSVTVGLRSNTHAVLVALKRNADELS---SYQKKIIKCDEHMGLSLAGLAPDARVLSNYLRQQCNYSS----LV 97 (233)
T ss_dssp HHHHHTSCCEEEEECSSEEEEEEECCCSSTTB---CCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHcCCCEEEEEcCCEEEEEEEeccccccc---cccCcEEEEcCCEEEEEEechHHHHHHHHHHHHHHHHHH----HH
Confidence 68899999999999999999999999998742 478999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhc
Q psy8684 91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR 165 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~ 165 (226)
++++++++.+++.+++++|.| .|||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|+
T Consensus 98 ~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 176 (233)
T 1ryp_F 98 FNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLD 176 (233)
T ss_dssp HSCCCCHHHHHHHHHHHHHHHHHBTTCCCCCEEEEEEEEET-TEEEEEEECTTSCEEEESEEEESTTHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHhcccCCcCcceEEEEEEEeC-CcCEEEEECCCCCeeeeeEEEECCCcHHHHHHHHHHhc
Confidence 999999999999999999764 469999999999998 78999999999999999999999999999999999999
Q ss_pred C--CC--CHHHHHHHHHHHHHHHHhcc-cCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684 166 A--NM--KKQECIDFIKMGLSLAMARD-YASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220 (226)
Q Consensus 166 ~--~~--s~~eai~la~~~l~~~~~~d-~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~ 220 (226)
+ +| |++||+++++++|..+. +| ..++++++|++|++++ . ++.++++||++++
T Consensus 177 ~~~~m~~s~eea~~~a~~al~~~~-~d~~~s~~~i~v~vi~~~~-~-~~~l~~~ei~~~l 233 (233)
T 1ryp_F 177 TFIKIDGNPDELIKAGVEAISQSL-RDESLTVDNLSIAIVGKDT-P-FTIYDGEAVAKYI 233 (233)
T ss_dssp HHTTCCSCHHHHHHHHHHHHTTSC-CSSCCCTTTEEEEEEETTE-E-EEEEEGGGGGGGC
T ss_pred cccccCCCHHHHHHHHHHHHHHHh-hcccCCCCcEEEEEEECCC-C-EEECCHHHHHhhC
Confidence 8 99 99999999999999999 77 5689999999999996 3 6789999999875
No 35
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K 1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J* 2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J* 3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Probab=100.00 E-value=2.7e-45 Score=296.46 Aligned_cols=190 Identities=14% Similarity=0.234 Sum_probs=180.4
Q ss_pred CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
.||+|||+++||||||+|+|.+++.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++++++++
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~ 76 (198)
T 1ryp_K 1 MDIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQANIQLYS----IREDYELS 76 (198)
T ss_dssp CCCEEEEECSSCEEEEEECCEEETTEEEESCCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHTSCCC
T ss_pred CceEEEEEECCEEEEEECCCcccCCEEEecCCCceEEeCCCEEEEeccCHHHHHHHHHHHHHHHHHHH----HhcCCCCC
Confidence 37999999999999999999999988888999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHhcc---CCceeEEEEEEEeC-CCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHH
Q psy8684 97 VYRAANLFQKIFRSNE---GSFKAAIIIAGWDT-VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE 172 (226)
Q Consensus 97 ~~~~a~~l~~~~~~~~---~p~~v~~liaG~d~-~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~e 172 (226)
++.+++++++++|.++ +||++++|+||||+ +++|+||.+||+|++.+++++|+|+|+++++++||+.|+++||++|
T Consensus 77 v~~la~~l~~~l~~~~~~r~p~~v~~lvaG~D~~~~~p~Ly~idp~G~~~~~~~~aiG~g~~~a~~~Le~~~~~~~s~ee 156 (198)
T 1ryp_K 77 PQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEE 156 (198)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCCCEEEEEEEEETTTTEEEEEEECTTCCEEECSEEECTTHHHHHHHHHHHHCCTTCCHHH
T ss_pred HHHHHHHHHHHHHHhcccCCCceEEEEEEEEeCCCCCcEEEEECCCCCEEECCEEEEcccHHHHHHHHHhhcCCCCCHHH
Confidence 9999999999999874 49999999999996 5799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeCh
Q psy8684 173 CIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQ 213 (226)
Q Consensus 173 ai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~ 213 (226)
|++++++||..+.++|..+++++++++|+++| ++ .+++
T Consensus 157 a~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~--~~~~ 194 (198)
T 1ryp_K 157 GLDLLKLCVQELEKRMPMDFKGVIVKIVDKDG-IR--QVDD 194 (198)
T ss_dssp HHHHHHHHHHHHHHHCSBCCCCEEEEEEETTE-EE--EECC
T ss_pred HHHHHHHHHHHHHHhCccCCCceEEEEEcCCC-EE--Eecc
Confidence 99999999999999999999999999999998 53 4554
No 36
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I* 1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I* 3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I* 3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Probab=100.00 E-value=1.1e-44 Score=294.33 Aligned_cols=194 Identities=15% Similarity=0.229 Sum_probs=182.3
Q ss_pred cccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN 92 (226)
Q Consensus 13 ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 92 (226)
-..+|+|+|||+++||||||+|+|.+++.++.+++.+||++|+ |++++++|..+|++.+.++++.+++.|+ ++++
T Consensus 4 ~~~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~-~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~ 78 (204)
T 1ryp_J 4 SSINGGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHYG-HVFLGITGLATDVTTLNEMFRYKTNLYK----LKEE 78 (204)
T ss_dssp GGSSCCEEEEEECSSEEEEEEECCEEETTEEEESCCCCEEEET-TEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHS
T ss_pred cCCCCCeEEEEEeCCEEEEEEcCCcccCCEEeeCCcceEEEeC-CEEEEeeEcHHHHHHHHHHHHHHHHHHh----hccC
Confidence 4679999999999999999999999999888888999999999 9999999999999999999999999999 9999
Q ss_pred CCCCHHHHHHHHHHHHHhcc-CCceeEEEEEEEeC-CCCeEEEEECCCCcee-eeeeEEecCChHHHHHHHhhhhcCCCC
Q psy8684 93 EPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDT-VKGGQVYALPASGVLT-RQNCAVGGSGSSYILGYVDKEWRANMK 169 (226)
Q Consensus 93 ~~~~~~~~a~~l~~~~~~~~-~p~~v~~liaG~d~-~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~~~Le~~~~~~~s 169 (226)
++++++.++++++++++.++ .||++++|+||||+ +++|+||.+||.|++. +.+|+|+|+|+++++++||+.|+++||
T Consensus 79 ~~~~v~~la~~l~~~~y~~~~~P~~v~~lvaG~D~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~~~Le~~~~~~~s 158 (204)
T 1ryp_J 79 RAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGFDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLE 158 (204)
T ss_dssp SCCCHHHHHHHHHHHHHTTTTSCCCEEEEEEEECTTTCCEEEEEECTTCCEECCSSEEEEETTHHHHHHHHHHHCCSSCC
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCceEEEEEEEEeCCCCceEEEEECCCCCccccCceeEeccCHHHHHHHHhhhcCCCcC
Confidence 99999999999999997665 49999999999996 5789999999999985 457899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeC
Q psy8684 170 KQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT 212 (226)
Q Consensus 170 ~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~ 212 (226)
++||++++++||..+.++|..++++++|++|+++| +.++.++
T Consensus 159 ~eea~~l~~~al~~~~~~d~~s~~~i~v~vi~~~g-~~~~~~~ 200 (204)
T 1ryp_J 159 PEDLFETISQALLNAADRDALSGWGAVVYIIKKDE-VVKRYLK 200 (204)
T ss_dssp HHHHHHHHHHHHHHHHTTBTTSCSCEEEEEEESSC-EEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcccCCcEEEEEEcCCC-EEEEEee
Confidence 99999999999999999999899999999999999 8776654
No 37
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=100.00 E-value=6.9e-45 Score=301.56 Aligned_cols=200 Identities=19% Similarity=0.256 Sum_probs=188.2
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|+++++|++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 tT~vgi~~~dgVVlaaD~r~~~g~l~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (235)
T 1q5q_H 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFAVELEHYE----KIEGVPLTF 76 (235)
T ss_dssp CCEEEEECSSCEEEEECCCEEETTEEEESCCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHSSCCCH
T ss_pred CeEEEEEECCEEEEEECCCCCcCCEEecCCcCcEEEeCCcEEEEcCCcHHHHHHHHHHHHHHHHHhH----HHhCCCCCH
Confidence 6899999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhc----cCCceeEEEEEEEeCCCC-----eEEEEECCCCceeee--eeEEecCChHHHHHHHhhhhcC
Q psy8684 98 YRAANLFQKIFRSN----EGSFKAAIIIAGWDTVKG-----GQVYALPASGVLTRQ--NCAVGGSGSSYILGYVDKEWRA 166 (226)
Q Consensus 98 ~~~a~~l~~~~~~~----~~p~~v~~liaG~d~~~~-----p~ly~id~~G~~~~~--~~~a~Gsg~~~~~~~Le~~~~~ 166 (226)
+.+++.+++++|.+ .+||++++|+||||++++ |+||.+||+|++.++ +++|+|+|+++++++|++.|++
T Consensus 77 ~~la~~l~~~~~~~~~~~~rp~~v~~lvaG~D~~~g~~~~~p~Ly~idp~G~~~~~~~~~~aiGsgs~~a~~~Le~~~~~ 156 (235)
T 1q5q_H 77 DGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSP 156 (235)
T ss_dssp HHHHHHHHHHHHTTHHHHTTTCCEEEEEEEECTTCSSTTSCEEEEEECTTSCEEECCSSEEEESTTHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHHHHHHHhhhcccceEEEEEEEECCCCccCCCCEEEEECCCCceEEeCCCeEEECCCHHHHHHHHHhhcCC
Confidence 99999999999975 469999999999998657 999999999999988 9999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 167 NMKKQECIDFIKMGLSLAMARDYASGGL--I-----NIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 167 ~~s~~eai~la~~~l~~~~~~d~~~~~~--i-----~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+||++||++++++||..+.++|..++++ + +|++|+++| ++.++++||++++..+.
T Consensus 157 ~ms~eeA~~la~~al~~a~~~d~~sg~~~~i~~~~~ev~vi~~~g---~~~l~~~ei~~~~~~~~ 218 (235)
T 1q5q_H 157 DSDEETALRAAIESLYDAADDDSATGGPDLTRGIYPTAVTITQAG---AVHVSEETTSELARRIV 218 (235)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHCTTTCCCBTTTTBCCEEEEEETTE---EEECCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhCcccCCcccccccccEEEEEeCCC---eEEeCHHHHHHHHHHHH
Confidence 9999999999999999999999987753 2 999999988 45799999999998763
No 38
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome endopeptidase comple mycobacterium tuberculosis, hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis} SCOP: d.153.1.4 PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D 3hf9_A 3mfe_D
Probab=100.00 E-value=1.8e-45 Score=306.75 Aligned_cols=203 Identities=12% Similarity=0.188 Sum_probs=180.5
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+| +++.+||++|++||+|+++|+.+|++.|.+.++.+++.|+
T Consensus 18 EYA-~~av~~GtT~vgi~~kdgVVlaadkr--------~~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~l~~-- 86 (248)
T 3mi0_A 18 ELA-RKGIARAKSVVALAYAGGVLFVAENP--------SRSLQKISELYDRVGFAAAGKFNEFDNLRRGGIQFADTRG-- 86 (248)
T ss_dssp HHH-HHHHHTSCCEEEEEETTEEEEEEECC--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH--
T ss_pred HHH-HHHHhCCCcEEEEEeCCEEEEEEeCC--------CCCCCCeEEECCCEEEEEccCHHHHHHHHHHHHHHHHHHH--
Confidence 566 89999999999999999999999998 3578999999999999999999999999999999999999
Q ss_pred cccccC-CCCCHHHHHHHHH-HHHHhc---cCCceeEEEEEEEeC---CCCeEEEEECCCCcee-eeeeEEecCChHHHH
Q psy8684 87 GYREMN-EPPLVYRAANLFQ-KIFRSN---EGSFKAAIIIAGWDT---VKGGQVYALPASGVLT-RQNCAVGGSGSSYIL 157 (226)
Q Consensus 87 ~~~~~~-~~~~~~~~a~~l~-~~~~~~---~~p~~v~~liaG~d~---~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~ 157 (226)
++++ .+++++.++++++ .+.|.| .+||+|++|+||||+ .+||+||++||+|++. +++++|+|+|++.++
T Consensus 87 --~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~gv~~liaG~D~~~~~~gp~Ly~~Dp~G~~~~e~~~~a~Gsgs~~a~ 164 (248)
T 3mi0_A 87 --YAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYGETKRPELYRITYDGSIADEPHFVVMGGTTEPIA 164 (248)
T ss_dssp --HHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCTTCCCCCEEEEECTTSCEEEESSEEEESSCHHHHH
T ss_pred --HhcCCCCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcCCCCCCCCEEEEECCCeEEeecccEEEECccHHHHH
Confidence 8999 8999999999999 554444 579999999999997 4789999999999999 599999999999999
Q ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHHH-------hcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhcc
Q psy8684 158 GYVDKEWRANMKKQECIDFIKMGLSLAM-------ARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 158 ~~Le~~~~~~~s~~eai~la~~~l~~~~-------~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~ 223 (226)
++||+.|+++|+++||++++++||..+. +++ .++.+++|++|+++| ...++.|+++||++++.++
T Consensus 165 ~~Le~~y~~~mt~eeai~la~~aL~~~~~~~~~~~~~~-~~~~~iev~vv~~~g~~~~f~~l~~~ei~~~l~~~ 237 (248)
T 3mi0_A 165 NALKESYAENASLTDALRIAVAALRAGSADTSGGDQPT-LGVASLEVAVLDANRPRRAFRRITGSALQALLVDQ 237 (248)
T ss_dssp HHHHHHCCTTCCHHHHHHHHHHHHHHC-------------CCTTEEEEEEETTSSSCCEEECCHHHHHHTC---
T ss_pred HHHHhhcCCCCCHHHHHHHHHHHHHHHHhhcccCcccc-cCCCcEEEEEEECCCCcccEEECCHHHHHHHHHHc
Confidence 9999999999999999999999999998 554 467999999999996 2457899999999998875
No 39
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F* 1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F* 3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F* 3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Probab=100.00 E-value=2.1e-45 Score=306.18 Aligned_cols=203 Identities=17% Similarity=0.182 Sum_probs=187.6
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++.++.+ ..+||++|++||++++||..+|++.+.++++.+++.|+ ++
T Consensus 24 ~~av~~Gtt~vgi~~~dgVvlaaD~r~~~g~~~~~-~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~ 98 (244)
T 1ryp_G 24 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVPQ-KNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK----KL 98 (244)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEEEECCCTTBCTT-TSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHHCCCCEEEEEECCEEEEEEecccCCCCcccc-ccCceEEecCCEEEEEcccHHHHHHHHHHHHHHHHHHH----HH
Confidence 68999999999999999999999999999877654 45999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhc-----cCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh--
Q psy8684 91 MNEPPLVYRAANLFQKIFRSN-----EGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE-- 163 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~-----~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~-- 163 (226)
++++++++.+++++++++|.+ .+||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.
T Consensus 99 ~~~~~~v~~la~~l~~~~~~~t~~~~~rp~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiG~gs~~a~~~Le~~~~ 177 (244)
T 1ryp_G 99 YKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVD 177 (244)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHhcccCccCceEEEEEEEEeC-CcCEEEEECCCCCEEEeeEEEECCChHHHHHHHHHhHh
Confidence 999999999999999999876 369999999999997 789999999999999999999999999999999997
Q ss_pred -hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC---CCCeEEEEeChhhHhhHhhc
Q psy8684 164 -WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLEN---GKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 164 -~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~---~g~~~~~~l~~~ei~~~~~~ 222 (226)
|+++||++||++++++||..+.++|..++++++|.+|++ +| + +.+.++|+-+....
T Consensus 178 ~~~~~ms~eea~~la~~al~~~~~~d~~s~~~iev~vi~~~~~~g-~--~~~~~~~~~~~~~~ 237 (244)
T 1ryp_G 178 HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNG-L--HKFVKGDLLQEAID 237 (244)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHGGGGTTSCEEEEEEEEETTTTTT-S--EEECCTHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHhccCCCCCeEEEEEEEecCCCC-e--eeeChHHHHHHHHH
Confidence 999999999999999999999999998899999999998 67 4 35677776555443
No 40
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB: 3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H* 3h6i_C 3h6f_C 3hf9_H 3mfe_H
Probab=100.00 E-value=3.5e-45 Score=311.40 Aligned_cols=208 Identities=20% Similarity=0.262 Sum_probs=172.2
Q ss_pred CCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhcc
Q psy8684 8 ISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYG 87 (226)
Q Consensus 8 ~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~ 87 (226)
++ .+ +.+|||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+
T Consensus 50 ya-~~-v~~GtTiVgi~~kdGVVlAaD~r~t~g~li~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~lr~~~~~y~--- 124 (291)
T 2jay_A 50 GD-AQ-LPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTATGIAGTAAVAVEFARLYAVELEHYE--- 124 (291)
T ss_dssp ----------CCEEEEEETTEEEEEECCC--------CCCCCCEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHHH---
T ss_pred cc-cc-ccCCcEEEEEEECCEEEEEECCCccCCCeeecCCcccEEEeCCcEEEEEcccHHHHHHHHHHHHHHHHHhh---
Confidence 44 55 88999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCHHHHHHHHHHHHHhcc----CCceeEEEEEEEeCCCC-----eEEEEECCCCcee--eeeeEEecCChHHH
Q psy8684 88 YREMNEPPLVYRAANLFQKIFRSNE----GSFKAAIIIAGWDTVKG-----GQVYALPASGVLT--RQNCAVGGSGSSYI 156 (226)
Q Consensus 88 ~~~~~~~~~~~~~a~~l~~~~~~~~----~p~~v~~liaG~d~~~~-----p~ly~id~~G~~~--~~~~~a~Gsg~~~~ 156 (226)
+.++.+++++.+++.+++++|.++ +||++++|+||||.+++ |+||.+||+|++. +++++|+|+|++++
T Consensus 125 -~~~~~~i~v~~la~~la~~l~~~~~~~~rpf~v~~lvaG~D~~g~~~~~~p~Ly~iDp~G~~~e~~~~~~aiGsgs~~a 203 (291)
T 2jay_A 125 -KLEGVPLTFAGKINRLAIMVRGNLAAAMQGLLALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFA 203 (291)
T ss_dssp -HHHSSCCCHHHHHHHHHHHHHTCHHHHHHTCCCEEEEEEECTTCSCSTTCEEEEEECTTSCEEECSSSEEEESTTHHHH
T ss_pred -hhcCCCCCHHHHHHHHHHHHHHhhhhhccccceeEEEEEEeCCCCcCCCCCEEEEECCCCcEEecCCCEEEEecCHHHH
Confidence 899999999999999999999875 48999999999998556 9999999999988 89999999999999
Q ss_pred HHHHhhhhcCCCCHHHHHHHHHHHHHHHHhcccCCCCc--E-----EEEEEcCCCCeEEEEeChhhHhhHhhccC
Q psy8684 157 LGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL--I-----NIGVLENGKPMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 157 ~~~Le~~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~--i-----~i~vi~~~g~~~~~~l~~~ei~~~~~~~~ 224 (226)
+++|++.|+++|+++||++++++||..+.++|..+++. + +|++|+++| ++.++++||++++..+.
T Consensus 204 ~~~Le~~~~~~ms~eEAi~la~~aL~~a~~~D~~sg~~e~vr~~~~~v~vi~~dg---~~~l~~~ei~~~~~~~~ 275 (291)
T 2jay_A 204 KSSMKKLYSQVTDGDSGLRVAVEALYDAADDDSATGGPDLVRGIFPTAVIIDADG---AVDVPESRIAELARAII 275 (291)
T ss_dssp HHHHHHHGGGCCSHHHHHHHHHHHHHHC----------------CCEEEEEETTE---EEECCHHHHHHHHHHC-
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhhCCCCCCcccccccCCEEEEEECCC---eEEcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987654 2 699999998 45799999999998775
No 41
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H* 1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H* 2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H* 3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Probab=100.00 E-value=1.1e-44 Score=297.87 Aligned_cols=194 Identities=28% Similarity=0.487 Sum_probs=182.8
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 TT~vgi~~~dgVvlaaD~r~t~g~~~~~~~~~KI~~i~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (222)
T 1ryp_I 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIGSNIELHS----LYTSREPRV 76 (222)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESSCCCEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH----HHHTSCCCH
T ss_pred CeEEEEEECCEEEEEEcCCcccCCeeecCCcccEEEecCCEEEEecccHHHHHHHHHHHHHHHHHHH----HHcCCCCCH
Confidence 6899999999999999999999998999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI 177 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la 177 (226)
+.++++++++++.+++||++++|+||||+ +||+||.+||+|++.+++++|+|+|+++++++||+.|+++||++||++++
T Consensus 77 ~~~a~~l~~~l~~~~~p~~v~~lvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (222)
T 1ryp_I 77 VSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLA 155 (222)
T ss_dssp HHHHHHHHHHHHHTTTCSCEEEEEEEEET-TEEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHHCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCeeEEEEEEeC-CCCEEEEECCCCCEEecCEEEECCCHHHHHHHHHhhCCCCcCHHHHHHHH
Confidence 99999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhh
Q psy8684 178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQH 218 (226)
Q Consensus 178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~ 218 (226)
++||..+.++|..++++++|++|+++|++ +.+.+.++..
T Consensus 156 ~~al~~~~~~d~~sg~~i~v~vi~~~g~~--~~~~~~~~~~ 194 (222)
T 1ryp_I 156 SDAIQAGIWNDLGSGSNVDVCVMEIGKDA--EYLRNYLTPN 194 (222)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTSCE--EEEEEEECCC
T ss_pred HHHHHHHHhccccCCCcEEEEEEECCCCE--EEEeceecCC
Confidence 99999999999989999999999998833 3344444433
No 42
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_H* 3une_H
Probab=100.00 E-value=8.4e-45 Score=300.80 Aligned_cols=195 Identities=28% Similarity=0.487 Sum_probs=184.4
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCCH
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLV 97 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++|++||+|++||..+|++.+.++++.+++.|+ +++++++++
T Consensus 1 TTivgi~~~dgVVlaaD~r~t~g~~~~~~~~~KI~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~v 76 (234)
T 1iru_I 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLISSNLELHS----LSTGRLPRV 76 (234)
T ss_dssp CCEEEEEETTEEEEEECCCEESSSBEEESSCCCEEEEETTEEEEEEESHHHHHHHHHHHHHHHHHHH----HHHCSCCCH
T ss_pred CeEEEEEeCCEEEEEEcCCcccCceeccCcccceEEecCCEEEEecCcHHHHHHHHHHHHHHHHHHH----HhcCCCCCH
Confidence 6899999999999999999999988888999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHHHHHHhccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHHHHHH
Q psy8684 98 YRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFI 177 (226)
Q Consensus 98 ~~~a~~l~~~~~~~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~eai~la 177 (226)
+.+++++++.++.+++||++++|+||||+ .||+||.+||+|++.+++++|+|+|++.++++||+.|+++||++||++++
T Consensus 77 ~~la~~l~~~l~~~~~~~~v~llvaG~D~-~gp~Ly~idp~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~ms~eeA~~la 155 (234)
T 1iru_I 77 VTANRMLKQMLFRYRGYIGAALVLGGVDV-TGPHLYSIYPHGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLV 155 (234)
T ss_dssp HHHHHHHHHHHHHTTTCSCEEEEEEEECS-SCEEEEEECTTSCEEECSEEEESTTHHHHHHHHHHSCCTTCCHHHHHTHH
T ss_pred HHHHHHHHHHHHhcCCCCceeEEEEEEcC-CCCEEEEECCCCCEEecCEEEECCchHHHHHHHHHhccCCCCHHHHHHHH
Confidence 99999999999999999999999999998 78999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccCCCCcEEEEEEcCCCCeEEEEeChhhHhhHh
Q psy8684 178 KMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220 (226)
Q Consensus 178 ~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~ 220 (226)
++||..+.++|..+++++++++|+++| + +.+.+.++..-|
T Consensus 156 ~~al~~a~~~d~~sg~~i~v~vi~k~g-~--~~~~~~~~~~~~ 195 (234)
T 1iru_I 156 SEAIAAGIFNDLGSGSNIDLCVISKNK-L--DFLRPYTVPNKK 195 (234)
T ss_dssp HHHHHHHHHHCTTCCSCEEEEEEETTE-E--ECCSEEECCCCC
T ss_pred HHHHHHHHHhcccCCCCEEEEEEECCc-E--EEEcceecCccc
Confidence 999999999999899999999999998 5 355655554444
No 43
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G* 3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 4b4t_G 4g4s_G* 3bdm_F* 1fnt_G* 2zcy_F*
Probab=100.00 E-value=3e-45 Score=311.19 Aligned_cols=202 Identities=17% Similarity=0.176 Sum_probs=186.6
Q ss_pred CccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccc
Q psy8684 11 GTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYRE 90 (226)
Q Consensus 11 ~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~ 90 (226)
.+|+++|+|+|||+++||||||+|+|.+++.++. +..+||++|++||+|++||+.+|++.|+++++.+++.|+ ++
T Consensus 28 ~kAv~~GtT~Vgik~kdGVVlAaD~r~t~gl~~~-~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~lr~e~~~y~----~~ 102 (288)
T 3nzj_F 28 VKAVENGTTSIGIKCNDGVVFAVEKLITSKLLVP-QKNVKIQVVDRHIGCVYSGLIPDGRHLVNRGREEAASFK----KL 102 (288)
T ss_dssp HHHHHTSCCEEEEEETTEEEEEEEEEECCTTBCT-TCSCCCEEETTTEEEEEEECHHHHHHHHHHHHHHHHHHH----HH
T ss_pred HHHHhcCCcEEEEEECCEEEEEEcCCcccCCccc-cccceEEEEcCCEEEEecCcHHHHHHHHHHHHHHHHHHH----HH
Confidence 7899999999999999999999999999987665 477999999999999999999999999999999999999 99
Q ss_pred cCCCCCHHHHHHHHHHHHHhcc-----CCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhh--
Q psy8684 91 MNEPPLVYRAANLFQKIFRSNE-----GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKE-- 163 (226)
Q Consensus 91 ~~~~~~~~~~a~~l~~~~~~~~-----~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~-- 163 (226)
++++++++.+|+++++++|.|+ +||++++||||||. .||+||.+||+|++.+++++|+|+|++.++++|++.
T Consensus 103 ~~~~i~v~~lA~~l~~~l~~yt~~~~~rP~gv~~lvaG~D~-~Gp~Ly~iDp~G~~~~~~~~aiGsgs~~a~~~Lek~~~ 181 (288)
T 3nzj_F 103 YKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVDK-NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVD 181 (288)
T ss_dssp HSSCCCHHHHHHHHHHHHHHTTSCTTBCCCCEEEEEEEEET-TEEEEEEECTTSCEEEBSEEEESTTHHHHHHHHHHHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEeC-CCCEEEEECCCCCEEEcCEEEEcCcHHHHHHHHHHhcc
Confidence 9999999999999999999874 59999999999998 789999999999999999999999999999999999
Q ss_pred -hcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC-CCCeEEEEeChhhHhh
Q psy8684 164 -WRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLEN-GKPMEKLVFTQEEVQH 218 (226)
Q Consensus 164 -~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~-~g~~~~~~l~~~ei~~ 218 (226)
|+++||++||++++++||..+.+++..++..++|.+|++ +.+..++.++.+++++
T Consensus 182 ~~~~~ms~eEAv~la~~al~~a~~~~~~~~~~iev~vIt~~~~~~~~~~vp~~~~~~ 238 (288)
T 3nzj_F 182 HHPEGLSAREAVKQAAKIIYLAHEDNKEKDFELEISWCSLSETNGLHKFVKGDLLQE 238 (288)
T ss_dssp HCTTCCCHHHHHHHHHHHHHHHGGGGTTSEEEEEEEEEETTTSTTCCEECCHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEEecCCCceEEECCHHHHHH
Confidence 999999999999999999999999988888999999999 3224455666666654
No 44
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Probab=100.00 E-value=2.9e-44 Score=291.09 Aligned_cols=186 Identities=15% Similarity=0.246 Sum_probs=176.4
Q ss_pred CceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 17 gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
.||+|||+++||||||+|+|.++|.++.+++.+||++|++||++++||..+|++.+.++++.+++.|+ ++++++++
T Consensus 1 Mtt~vgi~~~dgVvlaaD~r~~~g~~~~~~~~~Ki~~i~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~~~~~~~ 76 (201)
T 1iru_K 1 MEYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQKNVQLYK----MRNGYELS 76 (201)
T ss_dssp CCCEEEEECSSEEEEEEECCEEETTEEEESSCCCEEECSSSEEEEEEESTTHHHHHHHHHHHHHHHHH----HHHSSCCC
T ss_pred CceEEEEEeCCEEEEEEcCccccCcEEEccCcceEEEecCCEEEEeCcCHHHHHHHHHHHHHHHHHHH----HHcCCCCC
Confidence 37999999999999999999999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHH-Hh--ccCCceeEEEEEEEeCCCCeEEEEECCCCceeeeeeEEecCChHHHHHHHhhhhcCCCCHHHH
Q psy8684 97 VYRAANLFQKIF-RS--NEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173 (226)
Q Consensus 97 ~~~~a~~l~~~~-~~--~~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~~~a~Gsg~~~~~~~Le~~~~~~~s~~ea 173 (226)
++.+++++++.+ +. .++||++++|+||||++++|+||.+||.|++.+++++|+|+|+++++++||+.|+++||++||
T Consensus 77 v~~~a~~~~~~l~~~~~~~~p~~~~~lvaG~D~~~gp~Ly~id~~G~~~~~~~~aiGsgs~~a~~~Le~~~~~~~s~eea 156 (201)
T 1iru_K 77 PTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYMDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERA 156 (201)
T ss_dssp HHHHHHHHHHHHHHHHTSSSCCCEEEEEEEEETTTEEEEEEECTTCCEEECSEEEESHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCccEEEEEEEEeCCCCeEEEEECCCcCeEECCEEEECCcHHHHHHHHHhcccCCCCHHHH
Confidence 999999998765 33 236999999999999867899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCeE
Q psy8684 174 IDFIKMGLSLAMARDYASGGLINIGVLENGKPME 207 (226)
Q Consensus 174 i~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~~ 207 (226)
++++++||..+.++|..+++++++++|+++| +.
T Consensus 157 ~~l~~~al~~a~~rd~~sg~~i~v~vi~~~g-~~ 189 (201)
T 1iru_K 157 VELLRKCLEELQKRFILNLPTFSVRIIDKNG-IH 189 (201)
T ss_dssp HHHHHHHHHHHHHTBCBCCCCEEEEEEETTE-EE
T ss_pred HHHHHHHHHHHHhhccccCCceEEEEEcCCC-eE
Confidence 9999999999999999999999999999999 64
No 45
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB: 2h6j_A 1q5r_A
Probab=100.00 E-value=2.6e-44 Score=301.93 Aligned_cols=204 Identities=14% Similarity=0.219 Sum_probs=181.6
Q ss_pred CCCCCccccCCceEEEEEeCCeEEEEEeCCccCCceeeecccCceEeecCeeEEEeCCChHHHHHHHHHHHHHHHhhhhc
Q psy8684 7 DISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVSYHIDLDVAY 86 (226)
Q Consensus 7 ~~~~~~ai~~gttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~ 86 (226)
+|+ .+|+++|+|+|||+++||||||+|+| +++.+||++|++||+|++||..+|++.|.++++.+++.|+
T Consensus 18 EYA-~~av~~Gtt~vgi~~~dgVVlaaD~r--------s~~~~KI~~I~d~i~~~~aG~~aD~~~l~~~~~~~~~~~~-- 86 (259)
T 1q5q_A 18 ELA-RKGIARGRSVVVLTFRDGVLFVAENP--------STALHKVSELYDRLGFAAVGKYNEFENLRRAGIVHADMRG-- 86 (259)
T ss_dssp HHH-HHHHHTSCCEEEEECSSEEEEEECCS--------CSSSCSEEEEETTEEEEEEECHHHHHHHHHHHHHHHHHHH--
T ss_pred HHH-HHHHhcCCcEEEEEeCCEEEEEEecC--------CCCcCcEEEeCCCEEEEEccCHHHHHHHHHHHHHHHHHHH--
Confidence 355 78999999999999999999999998 3678999999999999999999999999999999999998
Q ss_pred cccccC-CCCCHHHHHHHHHH-HHHhc---cCCceeEEEEEEEe--C-CCCeEEEEECCCCcee-eeeeEEecCChHHHH
Q psy8684 87 GYREMN-EPPLVYRAANLFQK-IFRSN---EGSFKAAIIIAGWD--T-VKGGQVYALPASGVLT-RQNCAVGGSGSSYIL 157 (226)
Q Consensus 87 ~~~~~~-~~~~~~~~a~~l~~-~~~~~---~~p~~v~~liaG~d--~-~~~p~ly~id~~G~~~-~~~~~a~Gsg~~~~~ 157 (226)
+.++ ++++++.+++++++ +.|.| .+||++++|+|||| + .++|+||.+||+|++. +++++|+|+|++.++
T Consensus 87 --~~~~~~~i~v~~la~~l~~~l~q~yt~~~rP~~v~~lvaG~D~~~~~~gp~Ly~idp~G~~~~~~~~~aiG~gs~~a~ 164 (259)
T 1q5q_A 87 --YSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVGSPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIA 164 (259)
T ss_dssp --HHSCGGGCCHHHHHHHHHHHHHHHHHHSSSCCCEEEEEEECCCSSCCCCCEEEEEETTSCEEEESSEEEESSSHHHHH
T ss_pred --HHcCCcCCCHHHHHHHHHHHHHHHhccCCCCceEEEEEEEEcccCCCCCCEEEEECCCCceeeCCCEEEECCChHHHH
Confidence 7777 49999999999999 43333 46999999999999 3 4799999999999999 789999999999999
Q ss_pred HHHhhhhcCCCCHHHHHHHHHHHHHHHH-----hcccCCCCcEEEEEEcCCC-CeEEEEeChhhHhhHhhccC
Q psy8684 158 GYVDKEWRANMKKQECIDFIKMGLSLAM-----ARDYASGGLINIGVLENGK-PMEKLVFTQEEVQHFFNHEA 224 (226)
Q Consensus 158 ~~Le~~~~~~~s~~eai~la~~~l~~~~-----~~d~~~~~~i~i~vi~~~g-~~~~~~l~~~ei~~~~~~~~ 224 (226)
++|++.|+++||++||++++++||..+. ++|. ++++++|++|+++| ...++.++++||+.++..+.
T Consensus 165 ~~Le~~~~~~ms~eea~~la~~al~~~~~~~~~~rd~-sg~~iev~vi~~~~~~~~~~~l~~~ei~~~~~~~~ 236 (259)
T 1q5q_A 165 TAMRESYRADLDLEAAVGIAVNALRQGGAGEGEKRNV-DVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAEP 236 (259)
T ss_dssp HHHHHHCCTTCCHHHHHHHHHHHHTTCC--------C-CSSCSEEEEEETTSSSCCEEECCHHHHHTTSCCC-
T ss_pred HHHHhhccCCCCHHHHHHHHHHHHHHHhhcccccccC-CCCcEEEEEEECCCCcCCeEECCHHHHHHHHHHhh
Confidence 9999999999999999999999999998 8998 88999999999984 01267899999999998764
No 46
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase; 2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A 1yyf_D* 3ty6_A
Probab=100.00 E-value=6.4e-36 Score=238.18 Aligned_cols=169 Identities=20% Similarity=0.228 Sum_probs=150.4
Q ss_pred cCCceEEEEEeCCeEEEEEeCCccCCce-eeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccC
Q psy8684 15 TCGTTTIACEYENGVMMGADTRTTLGTY-VCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMN 92 (226)
Q Consensus 15 ~~gttvigi~~~dgVvlaad~r~t~~~~-~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~ 92 (226)
.+|+|+|||+++||||||+|+|.+.|.+ +.+++.+||++| ++|++++++|.++|++.|.++++.+++.|+ |
T Consensus 3 ~~GtTivgi~~~dgVvlaaD~r~t~g~~~i~~~~~~KI~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~y~-------g 75 (180)
T 2z3b_A 3 FHATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFEKFEAKLEEYN-------G 75 (180)
T ss_dssp BCCCCEEEEEETTEEEEEECCCEEETTTEEEESCCCCEEEETTTTEEEEECSCHHHHHHHHHHHHHHHHHTT-------T
T ss_pred CCCeEEEEEEECCEEEEEECCCccCCCceEecCCCCcEEEECCCCEEEEeCchHHHHHHHHHHHHHHHHHhc-------C
Confidence 5799999999999999999999999888 999999999999 999999999999999999999999999886 3
Q ss_pred CCCCHHHHHHHHHHHHHhc--cCCceeEEEEEEEeCCCCeEEEEECCCCceee--eeeEEecCChHHHHHHHhhhhcC--
Q psy8684 93 EPPLVYRAANLFQKIFRSN--EGSFKAAIIIAGWDTVKGGQVYALPASGVLTR--QNCAVGGSGSSYILGYVDKEWRA-- 166 (226)
Q Consensus 93 ~~~~~~~~a~~l~~~~~~~--~~p~~v~~liaG~d~~~~p~ly~id~~G~~~~--~~~~a~Gsg~~~~~~~Le~~~~~-- 166 (226)
..++.++ .+.+.++++ .|||++++|+| | +|+||.+||.|++.+ +++.|+|+|+++++++||+.|++
T Consensus 76 --~~~~~~~-~l~~~~~~~~~~rp~~~~~lva--d---~p~ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ 147 (180)
T 2z3b_A 76 --NLKRAAV-ELAKEWRSDKVLRKLEAMLIVM--N---QDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKKHAG 147 (180)
T ss_dssp --CHHHHHH-HHHHHHHHCTTGGGCCCCEEEE--C---SSCEEEECTTCCEECCSSSEEEESTTHHHHHHHHHHHHHHHG
T ss_pred --ChHHHHH-HHHHHHHhhhCcCcceEEEEEE--c---CCeEEEECCCCcEEEeCCCEEEECCCHHHHHHHHHHhhhccC
Confidence 3333333 345555443 46999999999 3 599999999999987 59999999999999999999998
Q ss_pred -CCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEc
Q psy8684 167 -NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLE 201 (226)
Q Consensus 167 -~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~ 201 (226)
+||.+| ++.+||..+.++|..+++++++.+|+
T Consensus 148 ~~mt~ee---l~~~al~~a~~rd~~sg~~i~v~~i~ 180 (180)
T 2z3b_A 148 ESMSASE---IARAALETAGEICVYTNDQIILEELE 180 (180)
T ss_dssp GGCCHHH---HHHHHHHHHHHHCTTCCSCCEEEEEC
T ss_pred CCCCHHH---HHHHHHHHHHHhcCccCCeEEEEEEC
Confidence 999999 47799999999999999999999883
No 47
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G* 1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C* 1ht2_A* 1ned_A
Probab=100.00 E-value=1.9e-35 Score=234.24 Aligned_cols=167 Identities=17% Similarity=0.261 Sum_probs=149.6
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++| ++|+++++||..+|++.|.++++.+++.|+ . +
T Consensus 1 tT~vgi~~~dgVvlaaD~r~t~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~------~ 70 (174)
T 1g3k_A 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQ----G------H 70 (174)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT----T------C
T ss_pred CeEEEEEECCEEEEEECCCCccCCeeEeCCCCcEEEECCCCEEEEeCccHHHHHHHHHHHHHHHHHhc----C------c
Confidence 6899999999999999999999889999999999999 999999999999999999999999999998 4 3
Q ss_pred HHHHHHHHHHHHHhcc--CCceeEEEEEEEeCCCCeEEEEECCCCceeeee---eEEecCChHHHHHHHhhhhc-CCCCH
Q psy8684 97 VYRAANLFQKIFRSNE--GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN---CAVGGSGSSYILGYVDKEWR-ANMKK 170 (226)
Q Consensus 97 ~~~~a~~l~~~~~~~~--~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~---~~a~Gsg~~~~~~~Le~~~~-~~~s~ 170 (226)
+...+..+++.++.++ +| ++.+++|+| +|+||.+||+|++.+++ +.|+|+|+++++++||+.|+ ++||.
T Consensus 71 ~~~~~~~l~~~~~~~~~~r~--~~~~l~g~d---~p~Ly~~d~~G~~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~mt~ 145 (174)
T 1g3k_A 71 LLKSAVELAKDWRTDRALRK--LEAMLIVAD---EKESLIITGIGDVVQPEEDQILAIGSGGNYALSAARALVENTELSA 145 (174)
T ss_dssp HHHHHHHHHHHHHHSTTGGG--CCCEEEEEC---SSCEEEEETTTEEECCCTTCEEEESTTHHHHHHHHHHHHHHCCCCH
T ss_pred HHHHHHHHHHHHHhccCcCc--ceEEEEEEC---CCEEEEEcCCCcEEecCCCcEEEEcccHHHHHHHHHHhcccCCCCH
Confidence 4555566666666553 35 467888887 69999999999999988 99999999999999999999 99995
Q ss_pred HHHHHHHHHHHHHHHhcccCCCCcEEEEEEcC
Q psy8684 171 QECIDFIKMGLSLAMARDYASGGLINIGVLEN 202 (226)
Q Consensus 171 ~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~ 202 (226)
+ +++++||..+.++|..++++++|.+|+.
T Consensus 146 ~---~l~~~al~~a~~rd~~sg~~i~v~~i~~ 174 (174)
T 1g3k_A 146 H---EIVEKSLRIAGDICVFTNTNFTIEELPN 174 (174)
T ss_dssp H---HHHHHHHHHHHHHCTTCCSCCEEEEEC-
T ss_pred H---HHHHHHHHHHHHhccccCCceEEEEecC
Confidence 4 7999999999999999999999999963
No 48
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine residue, hydrolase; 2.10A {Thermotoga maritima} SCOP: d.153.1.4
Probab=100.00 E-value=2.8e-35 Score=232.59 Aligned_cols=165 Identities=20% Similarity=0.307 Sum_probs=149.3
Q ss_pred ceEEEEEeCCeEEEEEeCCccCCceeeecccCceEee-cCeeEEEeCCChHHHHHHHHHHHHHHHhhhhccccccCCCCC
Q psy8684 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKI-SDNIYCCRSGTAADTQAISDLVSYHIDLDVAYGYREMNEPPL 96 (226)
Q Consensus 18 ttvigi~~~dgVvlaad~r~t~~~~~~~~~~~Ki~~i-~~~i~~~~sG~~~D~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 96 (226)
||+|||+++||||||+|+|.++|.++.+++.+||++| ++|+++++||..+|++.+.++++.+++.|+ .+ .
T Consensus 1 tt~vgi~~~dgVvlaaD~r~~~g~~i~~~~~~Ki~~i~~~~i~~~~aG~~aD~~~l~~~~~~~~~~~~----~~-----~ 71 (171)
T 1m4y_A 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWG----GN-----L 71 (171)
T ss_dssp CCEEEEEETTEEEEEECCCEEETTEEEESCCCCEEEETTTTEEEEEESCHHHHHHHHHHHHHHHHHTT----TC-----H
T ss_pred CeEEEEEECCEEEEEECCCcccCCEEEeCCcceEEEeCCCCEEEEeCccHHHHHHHHHHHHHHHHHhc----cc-----H
Confidence 6899999999999999999999999999999999999 999999999999999999999999999988 54 3
Q ss_pred HHHHHHHHHHHHHhcc--CCceeEEEEEEEeCCCCeEEEEECCCCceeeee--eEEecCChHHHHHHHhhhhc-CCCCHH
Q psy8684 97 VYRAANLFQKIFRSNE--GSFKAAIIIAGWDTVKGGQVYALPASGVLTRQN--CAVGGSGSSYILGYVDKEWR-ANMKKQ 171 (226)
Q Consensus 97 ~~~~a~~l~~~~~~~~--~p~~v~~liaG~d~~~~p~ly~id~~G~~~~~~--~~a~Gsg~~~~~~~Le~~~~-~~~s~~ 171 (226)
++.++++.+ .+++++ +||++++|++ | +|+||.+||.|++.+++ +.|+|+|+++++++||+.|+ ++||.
T Consensus 72 ~~~~~~l~~-~~~~~~~~~~~~~~~lv~--D---~p~Ly~~d~~G~~~~~~~~~~a~Gsgs~~a~~~le~~~~~~~ms~- 144 (171)
T 1m4y_A 72 TKAAVELAK-DWRTDRVLRRLEALLLVA--D---KENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSA- 144 (171)
T ss_dssp HHHHHHHHH-HHHHCTTGGGCCCEEEEE--C---SSCEEEECTTSCEECCSSSEEEESTTHHHHHHHHHHHHHHCCCCH-
T ss_pred HHHHHHHHH-HHHHhCCCCceEEEEEEE--c---CCEEEEECCCCCEEecCCCEEEECCcHHHHHHHHHHhcccCCCCH-
Confidence 666777655 444443 4799999998 4 79999999999999987 99999999999999999999 99996
Q ss_pred HHHHHHHHHHHHHHhcccCCCCcEEEEEE
Q psy8684 172 ECIDFIKMGLSLAMARDYASGGLINIGVL 200 (226)
Q Consensus 172 eai~la~~~l~~~~~~d~~~~~~i~i~vi 200 (226)
++++++||..+.++|..++++++|.++
T Consensus 145 --~~l~~~al~~a~~rd~~sg~~i~v~~~ 171 (171)
T 1m4y_A 145 --REIVEKAMTIAGEICIYTNQNIVIEEV 171 (171)
T ss_dssp --HHHHHHHHHHHHHHCTTCCSCCEEEEC
T ss_pred --HHHHHHHHHHHHHhCcccCCeEEEEEC
Confidence 678999999999999999999999864
No 49
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}
Probab=40.16 E-value=18 Score=25.27 Aligned_cols=28 Identities=7% Similarity=0.032 Sum_probs=23.4
Q ss_pred EEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684 196 NIGVLENGKPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 196 ~i~vi~~~g~~~~~~l~~~ei~~~~~~~ 223 (226)
...+|+++|++..+.+.++++++.+++|
T Consensus 116 ~~~lid~~G~i~~~~~~~~~l~~~l~~i 143 (143)
T 4fo5_A 116 KNFLINDEGVIIAANVTPEKLTEILKAI 143 (143)
T ss_dssp CEEEECTTSBEEEESCCHHHHHHHHTC-
T ss_pred cEEEECCCCEEEEccCCHHHHHHHHHhC
Confidence 4678999998888888999999998765
No 50
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}
Probab=36.19 E-value=40 Score=23.36 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=24.1
Q ss_pred cEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 194 LINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 194 ~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
.-.+.+|+++|++..+....++|++++++
T Consensus 114 ~P~~~lid~~G~i~~~~~~~~~l~~~l~e 142 (142)
T 3eur_A 114 IPTLYLLDKNKTVLLKDATLQKVEQYLAE 142 (142)
T ss_dssp CSEEEEECTTCBEEEEEECHHHHHHHHHC
T ss_pred CCeEEEECCCCcEEecCCCHHHHHHHHhC
Confidence 34688999999888888898999988764
No 51
>3c2i_A Methyl-CPG-binding protein 2; water mediated recognition; HET: DNA 5CM; 2.50A {Homo sapiens} PDB: 1qk9_A
Probab=30.96 E-value=47 Score=22.69 Aligned_cols=28 Identities=14% Similarity=0.236 Sum_probs=23.1
Q ss_pred CCCcEEEEEEcCCCCeEEEEeChhhHhhHhh
Q psy8684 191 SGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221 (226)
Q Consensus 191 ~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~ 221 (226)
+.+.+|+..+.++| -+++ +..||..+|.
T Consensus 40 s~gk~DvYY~sP~G-kkfR--Sk~ev~ryL~ 67 (97)
T 3c2i_A 40 SAGKYDVYLINPQG-KAFR--SKVELIMYFE 67 (97)
T ss_dssp TTTCEEEEEECTTS-CEEC--SHHHHHHHHH
T ss_pred CCCcceEEEECCCC-CEEE--CHHHHHHHHH
Confidence 45689999999999 4444 8999999996
No 52
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}
Probab=30.51 E-value=29 Score=23.98 Aligned_cols=32 Identities=16% Similarity=0.127 Sum_probs=24.1
Q ss_pred cEEEEEEcCCCCeEEEEeChhhHhhHhhccCC
Q psy8684 194 LINIGVLENGKPMEKLVFTQEEVQHFFNHEAT 225 (226)
Q Consensus 194 ~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~~~ 225 (226)
.-.+.+|+++|++..+..+.+++++++.++..
T Consensus 110 ~P~~~lid~~G~i~~~~~~~~~l~~~l~~~~~ 141 (142)
T 3ewl_A 110 TPTIYLLDGRKRVILKDTSMEQLIDYLATQAG 141 (142)
T ss_dssp SSEEEEECTTCBEEECSCCHHHHHHHHHC---
T ss_pred CCeEEEECCCCCEEecCCCHHHHHHHHHHHcc
Confidence 34688999999777777888999999987753
No 53
>3vxv_A Methyl-CPG-binding domain protein 4; methyl CPG binding domain, protein-DNA complex, versatIle BA recognition, hydrolase-DNA complex; HET: DNA 5CM; 2.00A {Mus musculus} PDB: 3vxx_A* 3vyb_A* 3vyq_A*
Probab=29.89 E-value=55 Score=20.78 Aligned_cols=29 Identities=3% Similarity=0.214 Sum_probs=23.4
Q ss_pred CCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 191 SGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 191 ~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
+.+..++..+.+.| -++| +..||..+|..
T Consensus 22 s~gk~DvyY~sP~G-kk~R--Sk~ev~~yL~~ 50 (69)
T 3vxv_A 22 TAGKFDVYFISPQG-LKFR--SKRSLANYLLK 50 (69)
T ss_dssp TTTCEEEEEECTTS-CEEC--SHHHHHHHHHH
T ss_pred CCCcceEEEEcCCC-CEee--CHHHHHHHHHh
Confidence 34678999999999 4444 88999999876
No 54
>3fpw_A HBPS, extracellular HAEM-binding protein; heme binding protein; 1.60A {Streptomyces reticuli} PDB: 3fpv_A
Probab=29.73 E-value=1.4e+02 Score=22.86 Aligned_cols=37 Identities=8% Similarity=0.203 Sum_probs=31.7
Q ss_pred cCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCC
Q psy8684 165 RANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKP 205 (226)
Q Consensus 165 ~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~ 205 (226)
.+.+|+++|.+++..++..+.++ +.++.|.|++..|.
T Consensus 62 ~~~ltl~~A~~l~~aA~~~A~~~----g~pV~IaVvD~~G~ 98 (192)
T 3fpw_A 62 STHLTLEAATKAARAAVEAAEKD----GRHVSVAVVDRNGN 98 (192)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSC
T ss_pred cCCCCHHHHHHHHHHHHHHHHhc----CCCEEEEEEeCCCC
Confidence 35789999999999999999886 35899999998773
No 55
>2a2l_A Unknown; structural genomics, PSI, protein structure initiat YORK SGX research center for structural genomics, NYSGXRC, function; 2.20A {Klebsiella pneumoniae} SCOP: d.110.9.1
Probab=29.70 E-value=91 Score=22.65 Aligned_cols=37 Identities=8% Similarity=0.016 Sum_probs=31.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCCe
Q psy8684 166 ANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPM 206 (226)
Q Consensus 166 ~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~~ 206 (226)
+.+|+++|.+++..++..+.++ +.++.|.|++..|..
T Consensus 10 ~~lt~~~A~~l~~aa~~~A~~~----g~~v~IaVvD~~G~l 46 (145)
T 2a2l_A 10 QTITLAAAQQMAAAVEKKATEI----NVAVVFSVVDRGGNT 46 (145)
T ss_dssp EEECHHHHHHHHHHHHHHHHHT----TCCCEEEEEETTSCE
T ss_pred cCCCHHHHHHHHHHHHHHHHHc----CCCEEEEEEECCCCE
Confidence 4579999999999999999875 458999999987743
No 56
>2ky8_A Methyl-CPG-binding domain protein 2; DNA binding domain, transcription-DNA complex; HET: DNA 5CM TED; NMR {Gallus gallus}
Probab=27.15 E-value=87 Score=19.98 Aligned_cols=28 Identities=4% Similarity=0.161 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 192 GGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 192 ~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
.+..|+..+.+.| -+++ +..||..+|..
T Consensus 30 ~~k~DvyY~sP~G-kr~R--S~~ev~~YL~~ 57 (72)
T 2ky8_A 30 AGKSDVYYFSPSG-KKFR--SKPQLARYLGN 57 (72)
T ss_dssp TTCEEEEEECTTC-CEEE--SHHHHHHHHTT
T ss_pred CCceEEEEECCCC-CEeE--cHHHHHHHHhc
Confidence 4789999999999 4444 89999999865
No 57
>1apy_B Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_B*
Probab=23.86 E-value=1.8e+02 Score=21.19 Aligned_cols=57 Identities=7% Similarity=-0.089 Sum_probs=35.7
Q ss_pred eeeEEecCChHHHHHHHhh----hhcCCCCHHHHHHHHHHHHHHHHhcccCCCCcEEEEEEcCCCC
Q psy8684 144 QNCAVGGSGSSYILGYVDK----EWRANMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKP 205 (226)
Q Consensus 144 ~~~~a~Gsg~~~~~~~Le~----~~~~~~s~~eai~la~~~l~~~~~~d~~~~~~i~i~vi~~~g~ 205 (226)
.-..++|.|..+++..+-. ..+..++++||.+.+++-+.... .....-+..++++|.
T Consensus 47 ga~s~TG~GE~iiR~~~A~~iv~~m~~G~~~~~A~~~~i~~~~~~~-----~~~~ggvIa~d~~G~ 107 (141)
T 1apy_B 47 GAAAATGNGDILMRFLPSYQAVEYMRRGEDPTIACQKVISRIQKHF-----PEFFGAVICANVTGS 107 (141)
T ss_dssp EEEEEEECHHHHGGGCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHC-----TTCCEEEEEEETTSC
T ss_pred EEEEeecChHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHHHHHhc-----CCCcEEEEEEeCCCC
Confidence 3578999998776655443 23468899999887765443321 112335666777773
No 58
>1p4k_A N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase; alpha beta, beta alpha, sandwich, hydrolase; 1.90A {Elizabethkingia meningoseptica} SCOP: d.153.1.5 PDB: 1p4v_A 9gaa_A 9gaf_A 9gac_A 3ljq_A 2gl9_A* 1ayy_A 2gaw_A 2gac_A* 2gaw_B 1ayy_B 2gl9_B* 2gac_B*
Probab=21.55 E-value=2.2e+02 Score=23.38 Aligned_cols=69 Identities=10% Similarity=0.043 Sum_probs=43.1
Q ss_pred CCceee---eeeEEecCChHHHHHHHhhh----hcCCCCHHHHHHHHHHHHHHHHh-c-ccCCCCcEEEEEEcCCCCe
Q psy8684 138 SGVLTR---QNCAVGGSGSSYILGYVDKE----WRANMKKQECIDFIKMGLSLAMA-R-DYASGGLINIGVLENGKPM 206 (226)
Q Consensus 138 ~G~~~~---~~~~a~Gsg~~~~~~~Le~~----~~~~~s~~eai~la~~~l~~~~~-~-d~~~~~~i~i~vi~~~g~~ 206 (226)
.|.|.. .-.+++|.|..+++..+-.. .+.++++++|.+.+++-+..... + ....+...=+..++++|.+
T Consensus 189 aG~yAd~~~gavs~TG~GE~iir~~~A~~i~~~m~~G~s~~~A~~~ai~~~~~~~~~~~~~~~~~~gG~Iavd~~G~~ 266 (295)
T 1p4k_A 189 AGLFVDNEIGAATATGHGEEVIRTVGTHLVVELMNQGRTPQQACKEAVERIVKIVNRRGKNLKDIQVGFIALNKKGEY 266 (295)
T ss_dssp TTEEEETTTEEEEEEECHHHHHHHTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCCGGGCCEEEEEEETTSCE
T ss_pred ceeeecCCcEEEEeecccHHHHhhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCCceEEEEEEcCCCCE
Confidence 445553 35789999998887765533 34689999999888866655421 1 1111234445567887744
No 59
>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}
Probab=21.30 E-value=58 Score=22.81 Aligned_cols=30 Identities=3% Similarity=0.027 Sum_probs=22.6
Q ss_pred cEEEEEEcCCCCeEEEEeChhhHhhHhhcc
Q psy8684 194 LINIGVLENGKPMEKLVFTQEEVQHFFNHE 223 (226)
Q Consensus 194 ~i~i~vi~~~g~~~~~~l~~~ei~~~~~~~ 223 (226)
.-.+.+++++|++..+.++++++.+.++.+
T Consensus 110 ~P~~~lid~~G~i~~~~~~~~~l~~~l~~l 139 (152)
T 2lrn_A 110 FPHIILVDPEGKIVAKELRGDDLYNTVEKF 139 (152)
T ss_dssp SCEEEEECTTSEEEEECCCTTHHHHHHHHH
T ss_pred CCeEEEECCCCeEEEeeCCHHHHHHHHHHH
Confidence 346788999997766657888888877654
No 60
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=21.13 E-value=1.4e+02 Score=17.76 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=24.6
Q ss_pred HHHHHHhhhhc-CCCCH--HHHHHHHHHHHHHHHhccc
Q psy8684 155 YILGYVDKEWR-ANMKK--QECIDFIKMGLSLAMARDY 189 (226)
Q Consensus 155 ~~~~~Le~~~~-~~~s~--~eai~la~~~l~~~~~~d~ 189 (226)
.+..+|..... ..++. .|.+++|..||..+.+-|.
T Consensus 8 sIi~FL~~~~~~~~~s~D~~ESleVAiqCi~~aF~v~~ 45 (52)
T 4gof_A 8 AIIQFLHDQLRHGGLSSDAQESLEVAIQCLETAFGVTV 45 (52)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHhcccCCcCHhHHHHHHHHHHHHHHHcCCCc
Confidence 34556665543 34544 6799999999999987665
No 61
>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}
Probab=21.08 E-value=1.1e+02 Score=20.26 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=22.3
Q ss_pred cEEEEEEcCCCCeEEEE---eChhhHhhHhhccC
Q psy8684 194 LINIGVLENGKPMEKLV---FTQEEVQHFFNHEA 224 (226)
Q Consensus 194 ~i~i~vi~~~g~~~~~~---l~~~ei~~~~~~~~ 224 (226)
.-.+.+++++|++..+. .+.+++.+.+..++
T Consensus 105 ~P~~~lid~~G~i~~~~~g~~~~~~l~~~l~~l~ 138 (138)
T 4evm_A 105 YPTQAFIDKEGKLVKTHPGFMEKDAILQTLKELA 138 (138)
T ss_dssp SSEEEEECTTCCEEEEEESCCCHHHHHHHHHHCC
T ss_pred CCeEEEECCCCcEEEeecCCCcHHHHHHHHHhhC
Confidence 45678899999776554 46678888887764
No 62
>1d9n_A Methyl-CPG-binding protein MBD1; PCM1, methylation, DNA binding domain, gene regulation; NMR {Homo sapiens} SCOP: d.10.1.3 PDB: 1ig4_A*
Probab=20.15 E-value=65 Score=20.80 Aligned_cols=29 Identities=7% Similarity=0.011 Sum_probs=23.0
Q ss_pred CCCcEEEEEEcCCCCeEEEEeChhhHhhHhhc
Q psy8684 191 SGGLINIGVLENGKPMEKLVFTQEEVQHFFNH 222 (226)
Q Consensus 191 ~~~~i~i~vi~~~g~~~~~~l~~~ei~~~~~~ 222 (226)
+.+..++..+.++| -++| +..||..+|.+
T Consensus 27 s~gk~DvyY~sP~G-kk~R--S~~ev~ryL~~ 55 (75)
T 1d9n_A 27 TCGRSDTYYQSPTG-DRIR--SKVELTRYLGP 55 (75)
T ss_dssp TTCCCCEEEECSSS-CEEC--STHHHHHHHCT
T ss_pred CCCceEEEEECCCC-Ceee--cHHHHHHHhcc
Confidence 34689999999999 4444 88999999864
Done!