RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8684
(226 letters)
>1ryp_H 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 3nzj_N*
3nzw_N* 3nzx_N* 1vsy_H 3l5q_B 1g65_N* 1fnt_H 1g0u_N*
1jd2_N* 1z7q_H 2f16_N* 2fak_N* 2fny_N* 2gpl_N* 2zcy_N*
3bdm_N* 3d29_N* 3dy3_N* 3dy4_N* 3e47_N* ...
Length = 205
Score = 219 bits (561), Expect = 4e-73
Identities = 89/208 (42%), Positives = 136/208 (65%), Gaps = 8/208 (3%)
Query: 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
EV+ G + +A +++GV++GAD+RTT G Y+ NR +KLT++ D I+CCRSG+AADTQAI
Sbjct: 5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 64
Query: 73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
+D+V YH++L Y P AA++F+++ N+ + A II+AG+D G+V
Sbjct: 65 ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
Y +P G + + A+ GSGS++I GY DK +R NM K+E +DFIK LS A+ D +SG
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179
Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQHF 219
G+I + VL G +E+L+F +E +
Sbjct: 180 GVIRMVVLTAAG--VERLIFYPDEYEQL 205
>1iru_H 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_N* 3une_N
Length = 205
Score = 216 bits (552), Expect = 1e-71
Identities = 96/203 (47%), Positives = 139/203 (68%), Gaps = 7/203 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT +A +++ GV++GAD+RTT G+Y+ NR +KLT I D I+CCRSG+AADTQA++D V+
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
Y + + NEPPLV+ AA+LF+++ A IIIAGWD +GGQVY++P
Sbjct: 61 YQLGF---HSIEL-NEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G++ RQ+ A+GGSGSSYI GYVD +R M K+EC+ F L+LAM RD +SGG+I +
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176
Query: 198 GVL-ENGKPMEKLVFTQEEVQHF 219
+ E+G +E+ V +++ F
Sbjct: 177 AAIAESG--VERQVLLGDQIPKF 197
>3nzj_H Proteasome component PUP1; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_H* 3nzx_H*
Length = 261
Score = 209 bits (534), Expect = 3e-68
Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 7/198 (3%)
Query: 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
+ GTT + ++ NGV++ ADTR+T G V ++ KL +IS I+C +GTAADT+A+
Sbjct: 25 ATSTGTTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAV 84
Query: 73 SDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQ 131
+ L+ +I+L + + P V A + ++ +G A +I+AG D G
Sbjct: 85 TQLIGSNIEL-----HSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSH 138
Query: 132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
++++ A G GSGS + ++ W+ ++ K+E I + + D S
Sbjct: 139 LFSIHAHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGS 198
Query: 192 GGLINIGVLENGKPMEKL 209
G +++ V+E GK E L
Sbjct: 199 GSNVDVCVMEIGKDAEYL 216
>3unf_N Proteasome subunit beta type-9; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_N
Length = 199
Score = 205 bits (524), Expect = 1e-67
Identities = 82/203 (40%), Positives = 122/203 (60%), Gaps = 6/203 (2%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT +A E++ GV++G+D+R + GT V NR +KL+ + I+C SG+AAD QAI+D+ +
Sbjct: 1 TTIMAVEFDGGVVVGSDSRVSAGTAVVNRVFDKLSPLHQRIFCALSGSAADAQAIADMAA 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
Y ++L +G EPPLV AAN+ + I A +I+AGWD +GGQVY
Sbjct: 61 YQLEL---HGLEL-EEPPLVLAAANVVKNISYKYREDLLAHLIVAGWDQREGGQVYGTMG 116
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G+L RQ +GGSGSSYI GYVD ++ M +EC F ++LAM RD +SGG+I +
Sbjct: 117 -GMLIRQPFTIGGSGSSYIYGYVDAAYKPGMTPEECRRFTTNAITLAMNRDGSSGGVIYL 175
Query: 198 GVLENGKPMEKLVFTQEEVQHFF 220
+ ++ V +E+ F+
Sbjct: 176 VTITAAG-VDHRVILGDELPKFY 197
>1ryp_I 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1g0u_H*
1jd2_H* 1g65_H 1vsy_I 1z7q_I 2f16_H* 2fak_H* 2fny_H*
2gpl_H* 3d29_H* 3dy3_H* 3dy4_H* 3e47_H* 3gpj_H* 3gpt_H*
3gpw_H* 3hye_H* 3l5q_M 3mg0_H* 3mg4_H* ...
Length = 222
Score = 206 bits (526), Expect = 2e-67
Identities = 57/193 (29%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT + ++ NGV++ ADTR+T G V ++ KL +IS I+C +GTAADT+A++ L+
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 78 YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
+I+L + + P V A + ++ +G A +I+AG D G ++++
Sbjct: 61 SNIEL-----HSLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVD-PTGSHLFSIH 114
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
A G GSGS + ++ W+ ++ K+E I + + D SG ++
Sbjct: 115 AHGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVD 174
Query: 197 IGVLENGKPMEKL 209
+ V+E GK E L
Sbjct: 175 VCVMEIGKDAEYL 187
>3unf_H Proteasome subunit beta type-10; antigen presentation, drug
development, protein degradation, hydrolase-hydrolase
inhibitor complex; HET: 04C; 2.90A {Mus musculus} PDB:
3unh_H
Length = 234
Score = 204 bits (522), Expect = 7e-67
Identities = 48/200 (24%), Positives = 95/200 (47%), Gaps = 8/200 (4%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT + +GV++GADTR T + V ++ EK+ I+ IYCC +G AADT+ + + +
Sbjct: 1 TTIAGLVFRDGVILGADTRATNDSVVADKSCEKIHFIAPKIYCCGAGVAADTEMTTRMAA 60
Query: 78 YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
++L + P V + ++ +G A++++ G D + G Q+Y +
Sbjct: 61 SKMEL-----HALSTGREPRVATVTRILRQTLFRYQGHVGASLVVGGVD-LNGPQLYEVH 114
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
G +R GSG + ++ ++ NM + + + ++ + D SGG ++
Sbjct: 115 PHGSYSRLPFTALGSGQGAAVALLEDRFQPNMTLEAAQELLVEAITAGILSDLGSGGNVD 174
Query: 197 IGVL-ENGKPMEKLVFTQEE 215
V+ G +++ + T E
Sbjct: 175 ACVITAGGAKLQRALSTPTE 194
>3nzj_K Proteasome component PRE2; ubiquitin, protein degradation,
N-terminal nucleophilic HYDR 19S regulatory particle;
HET: TY5 TRO MES; 2.40A {Saccharomyces cerevisiae} PDB:
3nzw_K* 3nzx_K*
Length = 287
Score = 206 bits (526), Expect = 1e-66
Identities = 45/203 (22%), Positives = 95/203 (46%), Gaps = 6/203 (2%)
Query: 3 PNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCR 62
+ + ++ GTTT+A ++ G+++ D+R T G +V ++ +K+ +I+ +
Sbjct: 61 DDSRNPDCKIKIAHGTTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTM 120
Query: 63 SGTAADTQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIII 121
+G AAD Q + L + RE E V A+ + + +G+ +I
Sbjct: 121 AGGAADCQFWETWLGSQCRL---HELRE-KERISVAAASKILSNLVYQYKGAGLSMGTMI 176
Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
G+ +G +Y + + G + + GSG ++ G +D ++ ++ ++ + K +
Sbjct: 177 CGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSI 236
Query: 182 SLAMARDYASGGLINIGVL-ENG 203
A RD SGG +N+ + E+G
Sbjct: 237 LAAAHRDAYSGGSVNLYHVTEDG 259
>1yar_H Proteasome beta subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_H
1yau_H 3ipm_H 1pma_B 3jrm_H 3c92_H 3c91_H 3jse_H 3jtl_H
Length = 217
Score = 202 bits (516), Expect = 4e-66
Identities = 45/207 (21%), Positives = 93/207 (44%), Gaps = 11/207 (5%)
Query: 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
+ GTTT+ ++ V+M + R T+ ++ ++ +KL +I +G D Q +
Sbjct: 4 TLETGTTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVL 63
Query: 73 SDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGG 130
+ ++L YR + + A L + + + +++ G DT
Sbjct: 64 VRYMKAELEL-----YRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGIDT--AP 116
Query: 131 QVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYA 190
V+++ A+G A GSGS ++ G ++ ++ M E +D + +S A RD A
Sbjct: 117 HVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSA 176
Query: 191 SGGLINIGVLENGKPMEKLVFTQEEVQ 217
SGG+I++ V+ +L ++++
Sbjct: 177 SGGMIDVAVITRKDGYVQL--PTDQIE 201
>1iru_I 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_H* 3une_H
Length = 234
Score = 201 bits (514), Expect = 1e-65
Identities = 54/187 (28%), Positives = 97/187 (51%), Gaps = 6/187 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT Y++G+++GADTR T G V ++ K+ IS NIYCC +GTAADT + L+S
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
+++L + P V A + +++ G AA+++ G D V G +Y++
Sbjct: 61 SNLEL---HSLST-GRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYP 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G + GSGS + + ++R +M+++E + + ++ + D SG I++
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175
Query: 198 GVL-ENG 203
V+ +N
Sbjct: 176 CVISKNK 182
>1ryp_L 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_L
1vsy_L 1z7q_L 3l5q_P 1g65_K* 1g0u_K* 1jd2_K* 2f16_K*
2fak_K* 2fny_K* 2gpl_K* 2zcy_K* 3bdm_K* 3d29_K* 3dy3_K*
3dy4_K* 3e47_K* 3gpj_K* 3gpt_K* 3gpw_K* ...
Length = 212
Score = 200 bits (512), Expect = 1e-65
Identities = 43/188 (22%), Positives = 89/188 (47%), Gaps = 6/188 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+A ++ G+++ D+R T G +V ++ +++ +I+ + +G AAD Q +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
L + RE E V A+ + + +G +I G+ +G +Y +
Sbjct: 61 SQCRL---HELRE-KERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD 116
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
+ G + + GSG ++ G +D ++ ++ ++ + K + A RD SGG +N
Sbjct: 117 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 176
Query: 197 IGVL-ENG 203
+ + E+G
Sbjct: 177 LYHVTEDG 184
>1iru_L 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_K* 3une_K 3unf_K* 3unh_K
Length = 204
Score = 197 bits (502), Expect = 4e-64
Identities = 50/188 (26%), Positives = 91/188 (48%), Gaps = 7/188 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+A ++ +GV++ AD+R T G Y+ ++ +K+ +I+ + +G AAD L++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
+ Y R E V A+ L + +G +I GWD +G +Y +
Sbjct: 61 RQCRI---YELRN-KERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVD 115
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
+ G GSGS Y G +D+ + +++ ++ D + + A RD SGG +N
Sbjct: 116 SEGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVN 175
Query: 197 IGVL-ENG 203
+ + E+G
Sbjct: 176 LYHVREDG 183
>3h4p_A Proteasome subunit alpha; core particle, cytoplasm, hydrolase,
protease, threonine protease; 4.10A {Methanocaldococcus
jannaschii}
Length = 264
Score = 197 bits (502), Expect = 6e-64
Identities = 13/186 (6%), Positives = 32/186 (17%), Gaps = 6/186 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
+ Y E + + + I
Sbjct: 2 SHMQMVPPSAYDRAITVFSPEGRLYQVEYAREAVRRGTTAIGIACKDGVVLAVDRRITSK 61
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKGGQVYAL- 135
+ + AA + I + + L
Sbjct: 62 LVKIR---SIEKI-FQIDDHVAAATSGLVADARVLIDRARLEAQIYRLTYGEEISIEMLA 117
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
+ + GG + + + + E + A A ++
Sbjct: 118 KKICDIKQAYTQHGGVRPFGVSLLIAGIDKNEARLFETDPSGALIEYKATAIGSGRPVVM 177
Query: 196 NIGVLE 201
+ E
Sbjct: 178 ELLEKE 183
>1iru_J 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_I* 3une_I 3unf_I* 3unh_I
Length = 205
Score = 195 bits (498), Expect = 1e-63
Identities = 39/201 (19%), Positives = 81/201 (40%), Gaps = 7/201 (3%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G +A + +N V + AD R + + + +K+ + D +Y +G A D Q ++ +
Sbjct: 8 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 67
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN-EGSFKAAIIIAGWD-TVKGGQVYA 134
+ ++L Y +E Y ++ + G + +IAG D + +
Sbjct: 68 KFRLNL---YELKE-GRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICS 123
Query: 135 LPASG-VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
L G + + V G+ + + G + W NM + I + A+ RD SG
Sbjct: 124 LDLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGM 183
Query: 194 LINIGVLENGKPMEKLVFTQE 214
+ + ++E K + + +
Sbjct: 184 GVIVHIIEKDKITTRTLKARM 204
>1j2q_H Proteasome beta subunit; ubiquitin, CP, hydrolase; HET: CIB; 2.83A
{Archaeoglobus fulgidus} SCOP: d.153.1.4
Length = 202
Score = 193 bits (493), Expect = 7e-63
Identities = 45/186 (24%), Positives = 89/186 (47%), Gaps = 7/186 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+ ++GV+M + R T+G ++ ++ A+K+ +I+D + +G+ D Q ++ ++
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL- 135
+L Y R P V A L + S + ++I G D+ +G +Y++
Sbjct: 61 IEANL---YEIRR-ERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDS-EGKSIYSID 115
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
P G + ++ GSGS G ++ + + E ++ + AM RD ASG I
Sbjct: 116 PIGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGI 175
Query: 196 NIGVLE 201
++ +
Sbjct: 176 DVVKIT 181
>1iru_N 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_M* 3une_M 3unf_M* 3unh_M
Length = 219
Score = 191 bits (488), Expect = 7e-62
Identities = 30/198 (15%), Positives = 68/198 (34%), Gaps = 10/198 (5%)
Query: 12 TEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQA 71
+ GT+ + ++E GV++ AD + G+ R ++ +++++ SG AD Q
Sbjct: 3 NPMVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQY 62
Query: 72 ISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWDTVK 128
+ ++ + + + RS ++I G+
Sbjct: 63 LKQVLGQMVID---EELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-G 118
Query: 129 GGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK--EWRANMKKQECIDFIKMGLSLAMA 186
+ + GV G G+ + + E + + + E D ++ + +
Sbjct: 119 ESFLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYY 178
Query: 187 RDYASGGLINIGVL-ENG 203
RD S + E G
Sbjct: 179 RDARSYNRFQTATVTEKG 196
>1ryp_K 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_K
1g0u_J* 1jd2_J* 1g65_J 1vsy_K 1z7q_K 2f16_J* 2fak_J*
2fny_J* 2gpl_J* 2zcy_J* 3bdm_J* 3d29_J* 3dy3_J* 3dy4_J*
3e47_J* 3gpj_J* 3gpt_J* 3gpw_J* 3hye_J* ...
Length = 198
Score = 190 bits (485), Expect = 1e-61
Identities = 30/186 (16%), Positives = 70/186 (37%), Gaps = 8/186 (4%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
+ ++ V++ + T G V +K ++S + +G A DT ++ +
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKI---FRSNEGSFKAAIIIAGWDTVKGG-QVY 133
+I L Y RE + ++ ++ + ++ ++I G+D K ++Y
Sbjct: 62 ANIQL---YSIRE-DYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELY 117
Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
+ G G Y +D +R +M +E +D +K+ + R
Sbjct: 118 QIDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFK 177
Query: 194 LINIGV 199
+ + +
Sbjct: 178 GVIVKI 183
>1iru_K 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_J* 3une_J 3unf_J* 3unh_J
Length = 201
Score = 189 bits (483), Expect = 3e-61
Identities = 32/190 (16%), Positives = 76/190 (40%), Gaps = 8/190 (4%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
I + + V++ +D + +K+ K+S+ I G A DT ++ +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKI---FRSNEGSFKAAIIIAGWDTVKGGQVYA 134
++ L Y R AAN ++ + + +++AG+D +G +Y
Sbjct: 62 KNVQL---YKMRN-GYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYY 117
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
+ L + A G G+ L +D+ + + ++ ++ ++ L R +
Sbjct: 118 MDYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPT 177
Query: 195 INIGVL-ENG 203
++ ++ +NG
Sbjct: 178 FSVRIIDKNG 187
>1iru_M 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_L* 3une_L 3unf_L* 3unh_L
Length = 213
Score = 188 bits (481), Expect = 8e-61
Identities = 42/208 (20%), Positives = 78/208 (37%), Gaps = 14/208 (6%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G T +A E+ ++ +DTR + G + R++ K K++D SG D ++ ++
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL 135
+ + Y + N+ A + I S + II G D G VY+
Sbjct: 69 EARLKM---YKHSN-NKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSF 124
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVD---------KEWRANMKKQECIDFIKMGLSLAMA 186
G R + GGS S+ + +D + + +K A
Sbjct: 125 DPVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAE 184
Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQE 214
RD +G + I ++ E+ V ++
Sbjct: 185 RDVYTGDALRICIVTKEGIREETVSLRK 212
>1ryp_N 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_N*
1jd2_M* 1g65_M 1vsy_N 1z7q_N 2f16_M* 2fak_M* 2fny_M*
2gpl_M* 3d29_M* 3dy3_M* 3dy4_M* 3e47_M* 3gpj_M* 3gpt_M*
3gpw_M* 3hye_M* 3l5q_R 3mg0_M* 3mg4_M* ...
Length = 233
Score = 187 bits (477), Expect = 6e-60
Identities = 38/205 (18%), Positives = 70/205 (34%), Gaps = 9/205 (4%)
Query: 12 TEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQA 71
+ GT+ I+ +Y+NGV++ AD + G+ + E+L + DN SG +D Q
Sbjct: 3 QPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQH 62
Query: 72 ISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWDTV 127
I L+ + + E + RS AII+AG +
Sbjct: 63 IERLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSN 122
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-----ANMKKQECIDFIKMGLS 182
+ + GV G G+ + K Q + I +
Sbjct: 123 GDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMR 182
Query: 183 LAMARDYASGGLINIGVLENGKPME 207
+ RD S ++ +++ +
Sbjct: 183 VLYYRDARSSRNFSLAIIDKNTGLT 207
>1ryp_M 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_M*
1jd2_L* 1g65_L 1vsy_M 1z7q_M 2f16_L* 2fak_L* 2fny_L*
2gpl_L* 3d29_L* 3dy3_L* 3dy4_L* 3e47_L* 3gpj_L* 3gpt_L*
3gpw_L* 3hye_L* 3l5q_Q 3mg0_L* 3mg4_L* ...
Length = 222
Score = 185 bits (472), Expect = 2e-59
Identities = 43/217 (19%), Positives = 79/217 (36%), Gaps = 21/217 (9%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G T + E+ ++ DTR + +R K+ DNI +G AAD A+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN-EGSFKAAIIIAGWDTVKGGQVYAL 135
+ Y + ++ + AA Q + + IIAG D G VY+
Sbjct: 69 KNSVKW---YHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVD-----------------KEWRANMKKQECIDFIK 178
G R+ C GG+ +S I+ ++D K+ + +E I ++
Sbjct: 126 DPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVR 185
Query: 179 MGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEE 215
+ A R G + I ++ ++ + +
Sbjct: 186 DSFTSATERHIQVGDGLEILIVTKDGVRKEFYELKRD 222
>1ryp_J 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_I*
1g65_I 1vsy_J 2f16_I* 2fak_I* 2fny_I* 2gpl_I* 3d29_I*
3dy3_I* 3dy4_I* 3e47_I* 3gpj_I* 3gpt_I* 3gpw_I* 3hye_I*
3l5q_N 3mg0_I* 3mg4_I* 3oeu_I* 3oev_I* ...
Length = 204
Score = 183 bits (466), Expect = 9e-59
Identities = 32/201 (15%), Positives = 79/201 (39%), Gaps = 8/201 (3%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G +A ++ V + D R + + + EK+ +++ +G A D ++++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSN-EGSFKAAIIIAGWDTVKG-GQVYA 134
Y +L Y +E L G + ++AG ++ G +
Sbjct: 67 RYKTNL---YKLKE-ERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAG 122
Query: 135 LPASG-VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
G + ++ V G+ S + G + + N++ ++ + I L A RD SG
Sbjct: 123 FDLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGW 182
Query: 194 LINIGVLENGKPMEKLVFTQE 214
+ +++ + +++ + ++
Sbjct: 183 GAVVYIIKKDEVVKRYLKMRQ 203
>2jay_A Proteasome; hydrolase; 1.99A {Mycobacterium tuberculosis} PDB:
3mka_C 3mi0_C* 2fhg_H* 2fhh_H 3krd_C* 3mfe_G 3hfa_H*
3h6i_C 3h6f_C 3hf9_H 3mfe_H
Length = 291
Score = 180 bits (457), Expect = 2e-56
Identities = 44/209 (21%), Positives = 75/209 (35%), Gaps = 17/209 (8%)
Query: 1 MEPNLPDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYC 60
+ P ++ GTT +A +Y GV+M D R+T G + R+ K+ D
Sbjct: 41 ISGGAPLAGGDAQLPHGTTIVALKYPGGVVMAGDRRSTQGNMISGRDVRKVYITDDYTAT 100
Query: 61 CRSGTAADTQAISDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNE----GSF 115
+GTAA + L + ++ Y P N + R N
Sbjct: 101 GIAGTAAVAVEFARLYAVELEH-----YEKLEGVPLTFAGKINRLAIMVRGNLAAAMQGL 155
Query: 116 KAAIIIAGWD-----TVKGGQVYALPASGV--LTRQNCAVGGSGSSYILGYVDKEWRANM 168
A ++AG+D G++ + A+G + + GSGS + + K +
Sbjct: 156 LALPLLAGYDIHASDPQSAGRIVSFDAAGGWNIEEEGYQAVGSGSLFAKSSMKKLYSQVT 215
Query: 169 KKQECIDFIKMGLSLAMARDYASGGLINI 197
+ L A D A+GG +
Sbjct: 216 DGDSGLRVAVEALYDAADDDSATGGPDLV 244
>1g0u_M Proteasome component PRE4; ubiquitin, degradation, protease,
NTN-hydrolase; 2.40A {Saccharomyces cerevisiae} SCOP:
d.153.1.4 PDB: 2zcy_M* 3bdm_M* 3mg6_M* 3mg7_M* 3mg8_M*
3nzj_M* 3nzw_M* 3nzx_M*
Length = 266
Score = 177 bits (451), Expect = 1e-55
Identities = 39/207 (18%), Positives = 70/207 (33%), Gaps = 15/207 (7%)
Query: 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
+ GT+ I+ +Y+NGV++ AD + G+ + E+L + DN SG +D Q I
Sbjct: 37 PIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHI 96
Query: 73 SDLVSYHIDLDVAYGYRE----MNEPPLVYRAANLFQKIF---RSNEGSFKAAIIIAGWD 125
L+ + Y E + RS AII+AG
Sbjct: 97 ERLLKDLVTE---NAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQ 153
Query: 126 TVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-----ANMKKQECIDFIKMG 180
+ + + GV G G+ + K Q + I
Sbjct: 154 SNGDQFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNA 213
Query: 181 LSLAMARDYASGGLINIGVLENGKPME 207
+ + RD S ++ +++ +
Sbjct: 214 MRVLYYRDARSSRNFSLAIIDKNTGLT 240
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Length = 235
Score = 172 bits (438), Expect = 4e-54
Identities = 40/196 (20%), Positives = 72/196 (36%), Gaps = 17/196 (8%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT +A Y+ GV++ D R T G + +R+ EK+ + +GTA + L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 78 YHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGS----FKAAIIIAGWDTV----- 127
++ Y P AN + R N G+ ++ G+D
Sbjct: 61 VELEH-----YEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDES 115
Query: 128 KGGQVYALPASG--VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
+ G++ + G R GSGS + + K + + ++ + L A
Sbjct: 116 RAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAA 175
Query: 186 ARDYASGGLINIGVLE 201
D A+GG +
Sbjct: 176 DDDSATGGPDLTRGIY 191
>1q5r_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, hydrolase; 3.10A {Rhodococcus
erythropolis} SCOP: d.153.1.4 PDB: 2h6j_H
Length = 294
Score = 172 bits (436), Expect = 3e-53
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 17/204 (8%)
Query: 6 PDISAGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGT 65
+ +G GTT +A Y+ GV++ D R T G + +R+ E + + +GT
Sbjct: 54 DGMESGDLAPHGTTIVALTYKGGVLLAGDRRATQGNLIASRDVEAVYVTDEYSAAGIAGT 113
Query: 66 AADTQAISDLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGS----FKAAII 120
A + L + ++ Y P AN + R N G+ +
Sbjct: 114 AGIAIELVRLFAVELEH-----YEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPL 168
Query: 121 IAGWDTV-----KGGQVYALPASG--VLTRQNCAVGGSGSSYILGYVDKEWRANMKKQEC 173
+ G+D + G++ + G R GSGS + + K + + ++
Sbjct: 169 LVGYDLDADDESRAGRIVSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETA 228
Query: 174 IDFIKMGLSLAMARDYASGGLINI 197
+ L A D A+GG
Sbjct: 229 LRAAIESLYDAADDDSATGGPDLT 252
>1q5q_A Proteasome alpha-type subunit 1; proteasome assembly, Pro-peptide,
inter-subunit contacts, RH erythropolis, hydrolase;
2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4 PDB:
2h6j_A 1q5r_A
Length = 259
Score = 106 bits (266), Expect = 3e-28
Identities = 33/218 (15%), Positives = 77/218 (35%), Gaps = 18/218 (8%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
A + G + + + +GV+ A+ +T K++++ D + G +
Sbjct: 20 ARKGIARGRSVVVLTFRDGVLFVAENPST--------ALHKVSELYDRLGFAAVGKYNEF 71
Query: 70 QAISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIA---GWD 125
+ + H D+ +Y R++ L A IF ++ I +A
Sbjct: 72 ENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVG 131
Query: 126 TVKGGQVYALPASGVLTRQN-CAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
+ K Q+Y + G + + V G + I + + +RA++ + + L
Sbjct: 132 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 191
Query: 185 MARDYASGGL----INIGVLENGKPMEKL-VFTQEEVQ 217
A + + + + VL+ +P ++
Sbjct: 192 GAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALE 229
>3mi0_A Proteasome subunit alpha; enzyme inhibitors, lactones, proteasome
endopeptidase comple mycobacterium tuberculosis,
hydrolase; HET: SA6; 2.20A {Mycobacterium tuberculosis}
PDB: 3h6f_A 3krd_A* 3h6i_A* 3mka_A 2fhh_A* 2fhg_A 3hfa_D
3hf9_A 3mfe_D
Length = 248
Score = 94.6 bits (235), Expect = 7e-24
Identities = 33/220 (15%), Positives = 70/220 (31%), Gaps = 20/220 (9%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
A + + +A Y GV+ A+ + R +K++++ D + +G +
Sbjct: 20 ARKGIARAKSVVALAYAGGVLFVAENPS--------RSLQKISELYDRVGFAAAGKFNEF 71
Query: 70 QAISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTV- 127
+ D AY R++ L A IF ++ + +A
Sbjct: 72 DNLRRGGIQFADTRGYAYDRRDVTGRQLANVYAQTLGTIFTEQAKPYEVELCVAEVAHYG 131
Query: 128 --KGGQVYALPASGVLTRQNCAV-GGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
K ++Y + G + + V G + I + + + N + + L
Sbjct: 132 ETKRPELYRITYDGSIADEPHFVVMGGTTEPIANALKESYAENASLTDALRIAVAALRAG 191
Query: 185 MARDYASGGL------INIGVLENGKPMEKL-VFTQEEVQ 217
A + + VL+ +P T +Q
Sbjct: 192 SADTSGGDQPTLGVASLEVAVLDANRPRRAFRRITGSALQ 231
>1g3k_A ATP-dependent protease HSLV; hydrolase; 1.90A {Haemophilus
influenzae} SCOP: d.153.1.4 PDB: 1g3i_G 1jjw_A 1kyi_G*
1ofh_G* 1ofi_G* 1e94_A* 1g4a_B* 1g4b_M 1hqy_A* 1ht1_C*
1ht2_A* 1ned_A
Length = 174
Score = 73.1 bits (179), Expect = 2e-16
Identities = 26/149 (17%), Positives = 54/149 (36%), Gaps = 11/149 (7%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLV 76
TT ++ V++G D + +LG V A K+ ++ + + +G AD + +L
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
L++ G+ ++A K +R++ K ++ D + + +
Sbjct: 61 ERK--LEMHQGHLL--------KSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIG 110
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWR 165
GSG +Y L
Sbjct: 111 DVVQPEEDQILAIGSGGNYALSAARALVE 139
>1m4y_A ATP-dependent protease HSLV; N-terminal catalytic threonine
residue, hydrolase; 2.10A {Thermotoga maritima} SCOP:
d.153.1.4
Length = 171
Score = 58.5 bits (141), Expect = 6e-11
Identities = 29/150 (19%), Positives = 51/150 (34%), Gaps = 14/150 (9%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLV 76
TT + +MG D + T G+ V A K+ K+ + + +G+ AD + D
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
+ L +AA K +R++ + ++ D +
Sbjct: 61 EAKL---------REWGGNLT-KAAVELAKDWRTDRVLRRLEALLLVADKENIFIIS--G 108
Query: 137 ASGVL-TRQNCAVGGSGSSYILGYVDKEWR 165
V+ + A GSG Y L R
Sbjct: 109 NGEVIQPDDDAAAIGSGGPYALAAAKALLR 138
>1ryp_C 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_B*
1g65_B 2f16_B* 2fak_B* 2fny_B* 2gpl_B* 3d29_B* 3dy3_B*
3dy4_B* 3e47_B* 3gpj_B* 3gpt_B* 3gpw_B* 3hye_B* 3mg0_B*
3mg4_B* 3okj_B* 3shj_B* 3tdd_B* 3nzj_B* ...
Length = 244
Score = 58.5 bits (142), Expect = 1e-10
Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 16/218 (7%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
A ++ T I +G+++ A+ + T + EKL K++D I +G AD
Sbjct: 24 ALESISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADA 83
Query: 70 QAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIA 122
+ + + +Y Y ++ LV R +++ Q + + G F + I A
Sbjct: 84 EILINTARIHAQNYLK----TYNE-DIPVEILVRRLSDIKQG-YTQHGGLRPFGVSFIYA 137
Query: 123 GWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLS 182
G+D G Q+Y SG T G+ +S + +++ +MK + I+ LS
Sbjct: 138 GYDDRYGYQLYTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLS 197
Query: 183 LAMARDYASGGLINIGVLENGKPMEKLVF---TQEEVQ 217
+ + + G ++ +E++
Sbjct: 198 KTTDSSALTYDRLEFATIRKGANDGEVYQKIFKPQEIK 235
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D*
1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D*
3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D*
3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Length = 242
Score = 58.4 bits (142), Expect = 1e-10
Identities = 45/220 (20%), Positives = 80/220 (36%), Gaps = 21/220 (9%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL- 75
G+T I + GV++G + R T + EK+ +I +I C SG AD +++ +
Sbjct: 26 GSTAIGIATKEGVVLGVEKRATSPLLE-SDSIEKIVEIDRHIGCAMSGLTADARSMIEHA 84
Query: 76 ----VSYHIDLDVAYGYREMNEPPLVYRAANLFQK-----IFRSNEGS--FKAAIIIAGW 124
V++++ Y ++N L +L + S F A++IAG
Sbjct: 85 RTAAVTHNL----YYDE-DINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGH 139
Query: 125 DTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
D G Q++ SG R N GSGS + EW +++ +E + L
Sbjct: 140 DADDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQV 199
Query: 185 MARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224
M + + + E+
Sbjct: 200 MEEKLDENN-AQLSCITKQDGFKIY--DNEKTAELIKELK 236
>2z3b_A ATP-dependent protease HSLV; N-terminal nucleophIle hydrolase;
2.50A {Bacillus subtilis} SCOP: d.153.1.4 PDB: 2z3a_A
1yyf_D* 3ty6_A
Length = 180
Score = 57.3 bits (138), Expect = 2e-10
Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 13/187 (6%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNRE-AEKLTKISDN-IYCCRSGTAADTQAISD 74
TT A +++ M D + T G V + A K+ K+ + + +G+ AD + +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 75 LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA 134
+ E L RAA K +RS++ K ++ + V
Sbjct: 65 KFEAKL---------EEYNGNLK-RAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSG 114
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
+ GSG +Y L + + + + L A +
Sbjct: 115 T-GEVIEPDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173
Query: 195 INIGVLE 201
I + LE
Sbjct: 174 IILEELE 180
>1yar_A Proteasome alpha subunit; proteasome 20S, PA26 proteasome activator
11S, hydrolase-HYD activator complex; 1.90A
{Thermoplasma acidophilum} SCOP: d.153.1.4 PDB: 1ya7_A
1pma_A 3c91_A 3c92_A 3ipm_A 2ku1_A 2ku2_A 1yau_A 3jrm_A
3jse_A 3jtl_A
Length = 233
Score = 55.7 bits (135), Expect = 9e-10
Identities = 47/219 (21%), Positives = 88/219 (40%), Gaps = 22/219 (10%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
A V G+T + ++ NGV++ +D + L EK+ I D + SG A
Sbjct: 27 AREAVKKGSTALGMKFANGVLLISDKKVRSRLIEQNSI---EKIQLIDDYVAAVTSGLVA 83
Query: 68 DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
D + + D + YG +N LV R A+ Q+ + G + ++I
Sbjct: 84 DARVLVDFARISAQQEKV----TYGS-LVNIENLVKRVADQMQQ-YTQYGGVRPYGVSLI 137
Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMG 180
AG D G +++ +G + GSG ++ ++++E++ N+ ++E +
Sbjct: 138 FAGIDQ-IGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKA 196
Query: 181 LSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
L ++ I + G QEEV+ F
Sbjct: 197 LKSSLEEGE-ELKAPEIASITVGNKYRIY--DQEEVKKF 232
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Length = 254
Score = 55.8 bits (135), Expect = 1e-09
Identities = 27/212 (12%), Positives = 69/212 (32%), Gaps = 14/212 (6%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V +T I ++GV+ G + Y ++L + ++ +G AD ++++
Sbjct: 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLA 88
Query: 74 DL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDT 126
D+ ++ +GY + L R A + F + ++ +
Sbjct: 89 DIAREEASNFRS----NFGY-NIPLKHLADRVAMYVHA-YTLYSAVRPFGCSFMLGSYSV 142
Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186
G Q+Y + SGV G ++K M ++ + + + +
Sbjct: 143 NDGAQLYMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHD 202
Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQEEVQH 218
+ + + + ++ +
Sbjct: 203 EVKDKAFELELSWVGELTNGRHEIVPKDIREE 234
>1iru_C 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_B* 3une_B 3unf_B* 3unh_B
Length = 261
Score = 55.4 bits (134), Expect = 2e-09
Identities = 39/219 (17%), Positives = 81/219 (36%), Gaps = 15/219 (6%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
A + T + +GV++ A+ R +EK+ K+++++ C +G +D
Sbjct: 24 AMEAIGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDA 83
Query: 70 QAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIA 122
+++ Y + Y + LV ++ Q + G F +++
Sbjct: 84 NVLTNELRLIAQRYLL----QYQE-PIPCEQLVTALCDIKQA-YTQFGGKRPFGVSLLYI 137
Query: 123 GWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-ANMKKQECIDFIKMGL 181
GWD G Q+Y SG G+ S+ + + ++++ M + + L
Sbjct: 138 GWDKHYGFQLYQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVL 197
Query: 182 SLAMARDYASGGLINIGVLENGKPMEKL-VFTQEEVQHF 219
+ M S + I L + V Q+EV+
Sbjct: 198 NKTMDVSKLSAEKVEIATLTRENGKTVIRVLKQKEVEQL 236
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C*
1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C*
3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C*
3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Length = 241
Score = 53.8 bits (130), Expect = 4e-09
Identities = 40/215 (18%), Positives = 88/215 (40%), Gaps = 18/215 (8%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V GT + + +N V++G + R+TL K++KI ++ SG AD++ +
Sbjct: 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI 84
Query: 74 DL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDT 126
+ S+ + + L A + Q+ + + G F + +IAG+D
Sbjct: 85 EKARVEAQSHRL----TLED-PVTVEYLTRYVAGVQQR-YTQSGGVRPFGVSTLIAGFDP 138
Query: 127 VKGG-QVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
++Y SG+ + + G S + +++K + + +K+ + ++
Sbjct: 139 RDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVR-SL 197
Query: 186 ARDYASGGL-INIGVLENGKPMEKLVFTQEEVQHF 219
+G I I V++ + L + EE+ +
Sbjct: 198 LEVVQTGAKNIEITVVKPDSDIVAL--SSEEINQY 230
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A
{Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Length = 246
Score = 52.7 bits (127), Expect = 1e-08
Identities = 43/220 (19%), Positives = 88/220 (40%), Gaps = 24/220 (10%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
A V G T I + + GV++ AD R L EK+ KI ++I SG A
Sbjct: 27 AREAVKRGATAIGIKCKEGVILIADKRVGSKLLEKDTI---EKIYKIDEHICAATSGLVA 83
Query: 68 DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
D + + D + Y + L + + Q + G F +++
Sbjct: 84 DARVLIDRARIEAQINRL----TYDI-PITVKELAKKICDFKQ-QYTQYGGVRPFGVSLL 137
Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMG 180
IAG + + ++Y SG L G G + + +KE+R ++ + + +
Sbjct: 138 IAGVN--EVPKLYETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVA 195
Query: 181 LSLAMARDYASGGLINIGVL-ENGKPMEKLVFTQEEVQHF 219
+ L++ + I +G + + + +++ + EE++ +
Sbjct: 196 MGLSIESELVPEN-IEVGYVKVDDRTFKEV--SPEELKPY 232
>1iru_E 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_D* 3une_D 3unf_D* 3unh_D
Length = 241
Score = 51.8 bits (125), Expect = 2e-08
Identities = 42/218 (19%), Positives = 79/218 (36%), Gaps = 29/218 (13%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAAD-------- 68
G+T I + GV + + R T EK+ +I +I C SG AD
Sbjct: 34 GSTAIGIQTSEGVCLAVEKRITSPLME-PSSIEKIVEIDAHIGCAMSGLIADAKTLIDKA 92
Query: 69 -TQAISDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK------IFRSNEGSFKAAIII 121
+ + +Y+ + V + +NL + + F A++
Sbjct: 93 RVETQNHWFTYNETMTVES---------VTQAVSNLALQFGEEDADPGAMSRPFGVALLF 143
Query: 122 AGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL 181
G D KG Q++ + SG + + GS S + + + +M +E I + L
Sbjct: 144 GGVDE-KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIIL 202
Query: 182 SLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
M + I + ++ G+ T+EE++
Sbjct: 203 KQVMEEKLNATN-IELATVQPGQNFHMF--TKEELEEV 237
>1iru_D 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unf_C* 3une_C* 3unh_C 3unb_C*
Length = 248
Score = 51.9 bits (125), Expect = 2e-08
Identities = 37/213 (17%), Positives = 83/213 (38%), Gaps = 23/213 (10%)
Query: 17 GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
G+T + + V++G + ++ L K+ + DN+ +G AD + + +
Sbjct: 29 GSTAVGVRGRDIVVLGVEKKSVAKLQDERTV---RKICALDDNVCMAFAGLTADARIVIN 85
Query: 75 L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
S+ + + + A+L Q+ + + G F + +I G+D
Sbjct: 86 RARVECQSHRL----TVED-PVTVEYITRYIASLKQR-YTQSNGRRPFGISALIVGFDFD 139
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMAR 187
++Y SG G G+ + +++K + + IK+ + A+
Sbjct: 140 GTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIE-TDDLTIKLVIK-ALLE 197
Query: 188 DYASGGL-INIGVLENGKPMEKLVFTQEEVQHF 219
SGG I + V+ + ++ L EE++ +
Sbjct: 198 VVQSGGKNIELAVMRRDQSLKIL--NPEEIEKY 228
>1ryp_B 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1fnt_B
1g0u_A* 1jd2_A* 1g65_A 1z7q_B 2f16_A* 2fak_A* 2fny_A*
2gpl_A* 2zcy_A* 3bdm_A* 3d29_A* 3dy3_A* 3dy4_A* 3e47_A*
3gpj_A* 3gpt_A* 3gpw_A* 3hye_A* 3mg0_A* ...
Length = 250
Score = 50.7 bits (122), Expect = 7e-08
Identities = 36/177 (20%), Positives = 71/177 (40%), Gaps = 15/177 (8%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD-- 74
G T++ + NGV++ + +++ + + K++ ++ +I SG D + + D
Sbjct: 31 GVTSLGIKATNGVVIATEKKSSSPLAM-SETLSKVSLLTPDIGAVYSGMGPDYRVLVDKS 89
Query: 75 ----LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTVK 128
SY YG LV A + Q + G F +++IAG D
Sbjct: 90 RKVAHTSYKR----IYGE-YPPTKLLVSEVAKIMQ-EATQSGGVRPFGVSLLIAGHDEFN 143
Query: 129 GGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM 185
G +Y + SG G GS +++K W ++ ++ I + L ++
Sbjct: 144 GFSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESV 200
>1ryp_F 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_E*
1g65_E 2f16_E* 2fak_E* 2fny_E* 2gpl_E* 3d29_E* 3dy3_E*
3dy4_E* 3e47_E* 3gpj_E* 3gpt_E* 3gpw_E* 3hye_E* 3mg0_E*
3mg4_E* 3oeu_E* 3oev_E* 3okj_E* 3shj_E* ...
Length = 233
Score = 50.3 bits (121), Expect = 8e-08
Identities = 35/223 (15%), Positives = 79/223 (35%), Gaps = 27/223 (12%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
A + G+ T+ ++ A R L +Y +K+ K +++ +G A
Sbjct: 24 ALEAIKQGSVTVGLRSNTHAVLVALKRNADELSSYQ-----KKIIKCDEHMGLSLAGLAP 78
Query: 68 DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
D + +S+ + + ++ + + QK + G + ++
Sbjct: 79 DARVLSNYLRQQCNYSSL----VFNR-KLAVERAGHLLCDKAQK-NTQSYGGRPYGVGLL 132
Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQE-CIDFIKM 179
I G+D G + SG +T G+ S Y+++ +K + IK
Sbjct: 133 IIGYDK-SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKA 191
Query: 180 G---LSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
G +S ++ + + ++I ++ P E V +
Sbjct: 192 GVEAISQSLRDESLTVDNLSIAIVGKDTPFTIY--DGEAVAKY 232
>1iru_B 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_A* 3une_A 3unf_A* 3unh_A
Length = 233
Score = 49.9 bits (120), Expect = 9e-08
Identities = 34/212 (16%), Positives = 74/212 (34%), Gaps = 23/212 (10%)
Query: 17 GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
G ++ + NGV++ + + L K+ I+ +I SG D + +
Sbjct: 31 GAPSVGIKAANGVVLATEKKQKSILYDERSV---HKVEPITKHIGLVYSGMGPDYRVLVH 87
Query: 75 L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
Y++ Y + LV R A++ Q + + G F +++I GW+
Sbjct: 88 RARKLAQQYYL----VYQE-PIPTAQLVQRVASVMQ-EYTQSGGVRPFGVSLLICGWNE- 140
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMAR 187
++ SG G +++K + +++ ++ I + L +
Sbjct: 141 GRPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEG 200
Query: 188 DYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
I +G+ T EV+ +
Sbjct: 201 QMTEDN-IEVGICNEAG---FRRLTPTEVKDY 228
Score = 50.0 bits (120), Expect = 1e-07
Identities = 48/220 (21%), Positives = 93/220 (42%), Gaps = 24/220 (10%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAA 67
A V GTT I ++GV++ D R T L EK+ +I D++ SG A
Sbjct: 31 AREAVRRGTTAIGIACKDGVVLAVDRRITSKLVKIRSI---EKIFQIDDHVAAATSGLVA 87
Query: 68 DTQAISDL-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAII 120
D + + D Y + YG E++ L + ++ Q + + G F +++
Sbjct: 88 DARVLIDRARLEAQIYRL----TYGE-EISIEMLAKKICDIKQ-AYTQHGGVRPFGVSLL 141
Query: 121 IAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMG 180
IAG D +++ SG L GSG ++ ++KE+R ++ E +++
Sbjct: 142 IAGIDK-NEARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDDITLDEG---LELA 197
Query: 181 LS-LAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
++ L A + +++ ++ K + EE++
Sbjct: 198 ITALTKANEDIKPENVDVCIITVKDAQFKKI-PVEEIKKL 236
>1iru_F 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_E* 3une_E 3unf_E* 3unh_E
Length = 263
Score = 48.0 bits (115), Expect = 5e-07
Identities = 31/215 (14%), Positives = 71/215 (33%), Gaps = 26/215 (12%)
Query: 17 GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
G+ T+ + + ++ A R L + +K+ + ++I +G AD + + +
Sbjct: 32 GSATVGLKSKTHAVLVALKRAQSELAAHQ-----KKILHVDNHIGISIAGLTADARLLCN 86
Query: 75 L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
+ + + LV + Q G + ++IAG+D
Sbjct: 87 FMRQECLDSRF----VFDR-PLPVSRLVSLIGSKTQI-PTQRYGRRPYGVGLLIAGYDD- 139
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK--KQECIDFIKMGLSLAM 185
G ++ S G+ S Y+++ M+ E + L +
Sbjct: 140 MGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETL 199
Query: 186 -ARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
A + ++IG++ ++V F
Sbjct: 200 PAEQDLTTKNVSIGIVGKDLEFTIY--DDDDVSPF 232
>1iru_A 20S proteasome; cell cycle, immune response, proteolysis,
ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4
PDB: 3unb_G* 3une_G 3unf_G* 3unh_G
Length = 246
Score = 47.6 bits (114), Expect = 7e-07
Identities = 40/212 (18%), Positives = 85/212 (40%), Gaps = 18/212 (8%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL- 75
G T++A ++ ++ + + + L KI++NI C +G AD+++
Sbjct: 36 GLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRA 94
Query: 76 ----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTVKG 129
++ YGY E+ L R A++ Q + N +I+ G D +G
Sbjct: 95 RYEAANWKY----KYGY-EIPVDMLCKRIADISQV-YTQNAEMRPLGCCMILIGIDEEQG 148
Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR--ANMKKQECIDFIKMGLSLAMAR 187
QVY +G G + +++K+ + + ++ ++ LS ++
Sbjct: 149 PQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSI 208
Query: 188 DYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
D+ I +GV+ P + + T+ E+
Sbjct: 209 DFKPSE-IEVGVVTVENPKFR-ILTEAEIDAH 238
>1ryp_A 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_G*
1g65_G 1vsy_A 2f16_G* 2fak_G* 2fny_G* 2gpl_G* 3d29_G*
3dy3_G* 3dy4_G* 3e47_G* 3gpj_G* 3gpt_G* 3gpw_G* 3hye_G*
3l5q_A 3mg0_G* 3mg4_G* 3oeu_G* 3oev_G* ...
Length = 243
Score = 47.2 bits (113), Expect = 8e-07
Identities = 30/222 (13%), Positives = 67/222 (30%), Gaps = 25/222 (11%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDL- 75
++A ++ ++ + + + + IS I +G D + +
Sbjct: 30 NINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRA 88
Query: 76 ----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTVKG 129
+ YGY +M L R ANL Q I+ + D G
Sbjct: 89 KAEAAEFRY----KYGY-DMPCDVLAKRMANLSQ-IYTQRAYMRPLGVILTFVSVDEELG 142
Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWR-------ANMKKQECIDFIKMGLS 182
+Y +G G I ++ ++ ++ ++F +
Sbjct: 143 PSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMI 202
Query: 183 LAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224
A+ +++ + +GV K + E ++ A
Sbjct: 203 DALGTEFSKND-LEVGVATKDKFF---TLSAENIEERLVAIA 240
>3nzj_F Proteasome component C1; ubiquitin, protein degradation, N-terminal
nucleophilic HYDR 19S regulatory particle; HET: TY5 TRO
MES; 2.40A {Saccharomyces cerevisiae} PDB: 1z7q_G*
3nzw_F* 3nzx_F* 3un4_F* 3un8_F* 3bdm_F* 1fnt_G* 2zcy_F*
Length = 288
Score = 45.4 bits (108), Expect = 4e-06
Identities = 39/218 (17%), Positives = 66/218 (30%), Gaps = 27/218 (12%)
Query: 17 GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
GTT+I + +GV+ + T L N K+ + +I C SG D + + +
Sbjct: 34 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN---VKIQVVDRHIGCVYSGLIPDGRHLVN 90
Query: 75 L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
S+ Y + P R Q F + I G D
Sbjct: 91 RGREEAASFKK----LYKT-PIPIPAFADRLGQYVQA-HTLYNSVRPFGVSTIFGGVDK- 143
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDK---EWRANMKKQECIDFIKMGLSLA 184
G +Y L SG A G G ++K + +E + + LA
Sbjct: 144 NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 203
Query: 185 MARDYASGGLINIGVL---ENGKPMEKLVFTQEEVQHF 219
+ + I E + + + +Q
Sbjct: 204 HEDNKEKDFELEISWCSLSETNGLHKFV--KGDLLQEA 239
>1ryp_G 20S proteasome; multicatalytic proteinase, protein degradation,
antigen processing, hydrolase, protease; 1.90A
{Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_F*
1g65_F 1vsy_G 2f16_F* 2fak_F* 2fny_F* 2gpl_F* 3d29_F*
3dy3_F* 3dy4_F* 3e47_F* 3gpj_F* 3gpt_F* 3gpw_F* 3hye_F*
3l5q_L 3mg0_F* 3mg4_F* 3okj_F* 3shj_F* ...
Length = 244
Score = 43.0 bits (102), Expect = 2e-05
Identities = 38/212 (17%), Positives = 65/212 (30%), Gaps = 22/212 (10%)
Query: 17 GTTTIACEYENGVMMGADTRTT--LGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISD 74
GTT+I + +GV+ + T L N K+ + +I C SG D + + +
Sbjct: 30 GTTSIGIKCNDGVVFAVEKLITSKLLVPQKN---VKIQVVDRHIGCVYSGLIPDGRHLVN 86
Query: 75 L-----VSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS--FKAAIIIAGWDTV 127
S+ Y + P R Q F + I G D
Sbjct: 87 RGREEAASFKK----LYKT-PIPIPAFADRLGQYVQA-HTLYNSVRPFGVSTIFGGVDK- 139
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGL---SLA 184
G +Y L SG A G G ++K + + + +K LA
Sbjct: 140 NGAHLYMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLA 199
Query: 185 MARDYASGGLINIGVLENGKPMEKLVFTQEEV 216
+ + I + F + ++
Sbjct: 200 HEDNKEKDFELEISWCSLSETNGLHKFVKGDL 231
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.054
Identities = 36/192 (18%), Positives = 60/192 (31%), Gaps = 68/192 (35%)
Query: 88 YREMNEPPLVYRAANLFQKIFRSNEGS---FKAAIIIAGW---DTVKGGQVY------AL 135
Y + L+ +A ++ R+ + F + I W + + Y +
Sbjct: 180 YHVLVGD-LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISC 238
Query: 136 PASGVLTRQNCAVGGSGSSYI-----LGYVDKEWRANMK-KQECIDFIKMGLSLAMARDY 189
P GV+ Q Y+ LG+ E R+ +K + +++A +
Sbjct: 239 PLIGVI--QLA-------HYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 190 AS---------GGLINIGV-------------------LENGK----PMEKLV---FTQE 214
S L IGV LEN + PM L TQE
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPM--LSISNLTQE 347
Query: 215 EVQHF---FNHE 223
+VQ + N
Sbjct: 348 QVQDYVNKTNSH 359
>2oq8_A ORF157, hypothetical protein; archaea, DNA binding, DNA binding
protein; 1.80A {Acidianus filamentous virus 1} PDB:
3ii2_A 3ii3_A 3ile_A 3ild_A
Length = 160
Score = 30.1 bits (67), Expect = 0.33
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 175 DFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
++IK GL + +DYA + + V ++GK E+ V++ E H F
Sbjct: 57 NYIKFGLYVLKNQDYARFEIAWVHVDKDGKIEERTVYSIETYWHIF 102
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase;
nucleotide-binding, isoprene biosynthesis, transferase,
ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex
aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Length = 271
Score = 28.7 bits (65), Expect = 1.4
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 96 LVYRAANLFQKIFRSNEG 113
LVY+ F++I
Sbjct: 64 LVYKGLREFERITGIEIN 81
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 2.9
Identities = 24/185 (12%), Positives = 54/185 (29%), Gaps = 27/185 (14%)
Query: 52 TKISDNIYCCRSGTAADTQA-ISDLVSYHID--LDVAYGYRE----MNEPPLVYRAANLF 104
+ ++ Y + + A + + + E + V LF
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 105 QKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEW 164
+ E + + + ++ Y S + T Q YI D+ +
Sbjct: 69 WTLLSKQEEMVQKFVE----EVLR--INYKFLMSPIKTEQR-QPSMMTRMYI-EQRDRLY 120
Query: 165 RA-------NMKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKP-MEKLVFTQEEV 216
N+ + + ++ L + ++ GVL +GK + V +V
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALL----ELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 217 QHFFN 221
Q +
Sbjct: 177 QCKMD 181
>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics
research consortium, oxidoreductase; NMR {Thermus
thermophilus}
Length = 130
Score = 26.6 bits (59), Expect = 4.4
Identities = 3/18 (16%), Positives = 5/18 (27%)
Query: 204 KPMEKLVFTQEEVQHFFN 221
+ M V + V
Sbjct: 35 QQMNTFVLSDPGVSRLLE 52
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase;
non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus
thermophilus} SCOP: d.14.1.5 d.58.26.5
Length = 275
Score = 27.1 bits (61), Expect = 4.6
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 3/26 (11%)
Query: 96 LVYRAANLFQKIFRSNEGSFKAAIII 121
L YRAA+L+ + G I++
Sbjct: 59 LAYRAASLYLEAAGQPGG---VRILL 81
>1nmo_A Hypothetical protein YBGI; toroidal structure, structure 2 project,
S2F, structural genomics, unknown function; 2.20A
{Escherichia coli} SCOP: c.135.1.1 PDB: 1nmp_A
Length = 247
Score = 26.9 bits (60), Expect = 6.1
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 168 MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT 212
MK E I L+ A DYA GL +E + ++K+V
Sbjct: 1 MKNTELEQLINEKLNSAAISDYAPNGL----QVEGKETVQKIVTG 41
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like,
C-terminal domain, reduced form at PH7, oxidoreductase;
0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A
2fwf_A 2fwg_A 1vrs_D 1uc7_A
Length = 134
Score = 25.5 bits (56), Expect = 8.5
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 204 KPMEKLVFTQEEVQHFFNH 222
K EK F+ +VQ
Sbjct: 47 KEFEKYTFSDPQVQKALAD 65
>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR
{Chlamydophila pneumoniae}
Length = 154
Score = 25.7 bits (56), Expect = 9.4
Identities = 4/18 (22%), Positives = 7/18 (38%)
Query: 204 KPMEKLVFTQEEVQHFFN 221
M+ + E +HF
Sbjct: 64 IKMQDQILQSSEFKHFAG 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,509,276
Number of extensions: 204396
Number of successful extensions: 544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 456
Number of HSP's successfully gapped: 62
Length of query: 226
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 136
Effective length of database: 4,188,903
Effective search space: 569690808
Effective search space used: 569690808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)