RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8684
(226 letters)
>d1iruh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 202
Score = 143 bits (362), Expect = 1e-43
Identities = 97/203 (47%), Positives = 140/203 (68%), Gaps = 7/203 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT +A +++ GV++GAD+RTT G+Y+ NR +KLT I D I+CCRSG+AADTQA++D V+
Sbjct: 1 TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRIFCCRSGSAADTQAVADAVT 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
Y + E+NEPPLV+ AA+LF+++ A IIIAGWD +GGQVY++P
Sbjct: 61 YQLGFH----SIELNEPPLVHTAASLFKEMCYRYREDLMAGIIIAGWDPQEGGQVYSVPM 116
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G++ RQ+ A+GGSGSSYI GYVD +R M K+EC+ F L+LAM RD +SGG+I +
Sbjct: 117 GGMMVRQSFAIGGSGSSYIYGYVDATYREGMTKEECLQFTANALALAMERDGSSGGVIRL 176
Query: 198 GVL-ENGKPMEKLVFTQEEVQHF 219
+ E+G +E+ V +++ F
Sbjct: 177 AAIAESG--VERQVLLGDQIPKF 197
>d1ryph_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 205
Score = 141 bits (355), Expect = 2e-42
Identities = 89/206 (43%), Positives = 136/206 (66%), Gaps = 8/206 (3%)
Query: 13 EVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAI 72
EV+ G + +A +++GV++GAD+RTT G Y+ NR +KLT++ D I+CCRSG+AADTQAI
Sbjct: 5 EVSLGASIMAVTFKDGVILGADSRTTTGAYIANRVTDKLTRVHDKIWCCRSGSAADTQAI 64
Query: 73 SDLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
+D+V YH++L Y P AA++F+++ N+ + A II+AG+D G+V
Sbjct: 65 ADIVQYHLEL-----YTSQYGTPSTETAASVFKELCYENKDNLTAGIIVAGYDDKNKGEV 119
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
Y +P G + + A+ GSGS++I GY DK +R NM K+E +DFIK LS A+ D +SG
Sbjct: 120 YTIPLGGSVHKLPYAIAGSGSTFIYGYCDKNFRENMSKEETVDFIKHSLSQAIKWDGSSG 179
Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQ 217
G+I + VL G +E+L+F +E +
Sbjct: 180 GVIRMVVLTAAG--VERLIFYPDEYE 203
>d1rypi_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 126 bits (318), Expect = 8e-37
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 5/192 (2%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT + ++ NGV++ ADTR+T G V ++ KL +IS I+C +GTAADT+A++ L+
Sbjct: 1 TTIVGVKFNNGVVIAADTRSTQGPIVADKNCAKLHRISPKIWCAGAGTAADTEAVTQLIG 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
+I+L + P V A + ++ +G A +I+AG D G ++++ A
Sbjct: 61 SNIELH----SLYTSREPRVVSALQMLKQHLFKYQGHIGAYLIVAGVDP-TGSHLFSIHA 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G GSGS + ++ W+ ++ K+E I + + D SG +++
Sbjct: 116 HGSTDVGYYLSLGSGSLAAMAVLESHWKQDLTKEEAIKLASDAIQAGIWNDLGSGSNVDV 175
Query: 198 GVLENGKPMEKL 209
V+E GK E L
Sbjct: 176 CVMEIGKDAEYL 187
>d1ryp1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 222
Score = 121 bits (305), Expect = 5e-35
Identities = 42/202 (20%), Positives = 74/202 (36%), Gaps = 21/202 (10%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G T + E+ ++ DTR + +R K+ DNI +G AAD A+
Sbjct: 9 GGTILGIAGEDFAVLAGDTRNITDYSINSRYEPKVFDCGDNIVMSANGFAADGDALVKRF 68
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYAL 135
+ Y + ++ + AA Q + + IIAG D G VY+
Sbjct: 69 KNSVKW---YHFDHNDKKLSINSAARNIQHLLYGKRFFPYYVHTIIAGLDEDGKGAVYSF 125
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRA-----------------NMKKQECIDFIK 178
G R+ C GG+ +S I+ ++D + + +E I ++
Sbjct: 126 DPVGSYEREQCRAGGAAASLIMPFLDNQVNFKNQYEPGTNGKVKKPLKYLSVEEVIKLVR 185
Query: 179 MGLSLAMARDYASGGLINIGVL 200
+ A R G + I ++
Sbjct: 186 DSFTSATERHIQVGDGLEILIV 207
>d1ryp2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 121 bits (305), Expect = 8e-35
Identities = 37/213 (17%), Positives = 72/213 (33%), Gaps = 11/213 (5%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
+ GT+ I+ +Y+NGV++ AD + G+ + E+L + DN SG +D Q I
Sbjct: 5 IVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGDISDMQHIE 64
Query: 74 DLVSYHIDLD-VAYGYREMNEPPLVYRAANLFQKIFRSNEGSFK---AAIIIAGWDTVKG 129
L+ + + + E + AII+AG +
Sbjct: 65 RLLKDLVTENAYDNPLADAEEALEPSYIFEYLATVMYQRRSKMNPLWNAIIVAGVQSNGD 124
Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRA-----NMKKQECIDFIKMGLSLA 184
+ + GV G G+ + K Q + I + +
Sbjct: 125 QFLRYVNLLGVTYSSPTLATGFGAHMANPLLRKVVDRESDIPKTTVQVAEEAIVNAMRVL 184
Query: 185 MARDYASGGLINIGVLENGKPMEKLVFTQEEVQ 217
RD S ++ +++ + +V+
Sbjct: 185 YYRDARSSRNFSLAIIDKNTGLTFK--KNLQVE 215
>d1irui_ d.153.1.4 (I:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 220
Score = 117 bits (294), Expect = 3e-33
Identities = 54/187 (28%), Positives = 95/187 (50%), Gaps = 5/187 (2%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT Y++G+++GADTR T G V ++ K+ IS NIYCC +GTAADT + L+S
Sbjct: 1 TTIAGVVYKDGIVLGADTRATEGMVVADKNCSKIHFISPNIYCCGAGTAADTDMTTQLIS 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
+++L P V A + +++ G AA+++ G D V G +Y++
Sbjct: 61 SNLELH----SLSTGRLPRVVTANRMLKQMLFRYRGYIGAALVLGGVD-VTGPHLYSIYP 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G + GSGS + + ++R +M+++E + + ++ + D SG I++
Sbjct: 116 HGSTDKLPYVTMGSGSLAAMAVFEDKFRPDMEEEEAKNLVSEAIAAGIFNDLGSGSNIDL 175
Query: 198 GVLENGK 204
V+ K
Sbjct: 176 CVISKNK 182
>d1yarh1 d.153.1.4 (H:1-203) Proteasome beta subunit (catalytic)
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 203
Score = 116 bits (290), Expect = 5e-33
Identities = 43/204 (21%), Positives = 90/204 (44%), Gaps = 7/204 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+ ++ V+M + R T+ ++ ++ +KL +I +G D Q + +
Sbjct: 1 TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQIDTYTGMTIAGLVGDAQVLVRYMK 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
++L Y + P+ A L + + + +++ G D V+++ A
Sbjct: 61 AELEL---YRLQRRVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGID--TAPHVFSIDA 115
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
+G A GSGS ++ G ++ ++ M E +D + +S A RD ASGG+I++
Sbjct: 116 AGGSVEDIYASTGSGSPFVYGVLESQYSEKMTVDEGVDLVIRAISAAKQRDSASGGMIDV 175
Query: 198 GVLENGKPMEKLVFTQEEVQHFFN 221
V+ +L ++++
Sbjct: 176 AVITRKDGYVQL--PTDQIESRIR 197
>d1j2qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 202
Score = 115 bits (288), Expect = 1e-32
Identities = 43/205 (20%), Positives = 87/205 (42%), Gaps = 8/205 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+ ++GV+M + R T+G ++ ++ A+K+ +I+D + +G+ D Q ++ ++
Sbjct: 1 TTTVGLVCKDGVVMATEKRATMGNFIASKAAKKIYQIADRMAMTTAGSVGDAQFLARIIK 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWDTVKGGQVYALP 136
+ P V A L + S + ++I G D+ P
Sbjct: 61 IEAN----LYEIRRERKPTVRAIATLTSNLLNSYRYFPYLVQLLIGGIDSEGKSIYSIDP 116
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
G + ++ GSGS G ++ + + E ++ + AM RD ASG I+
Sbjct: 117 IGGAIEEKDIVATGSGSLTAYGVLEDRFTPEIGVDEAVELAVRAIYSAMKRDSASGDGID 176
Query: 197 IGVLENGKPMEKLVFTQEEVQHFFN 221
+ + + ++ EEV+
Sbjct: 177 VVKITEDEFY---QYSPEEVEQILA 198
>d1rypl_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 115 bits (288), Expect = 2e-32
Identities = 39/184 (21%), Positives = 84/184 (45%), Gaps = 5/184 (2%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+A ++ G+++ D+R T G +V ++ +++ +I+ + +G AAD Q +
Sbjct: 1 TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKRVIEINPFLLGTMAGGAADCQFWETWLG 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKGGQVYALP 136
L E V A+ + + +G+ +I G+ +G +Y +
Sbjct: 61 SQCRLH----ELREKERISVAAASKILSNLVYQYKGAGLSMGTMICGYTRKEGPTIYYVD 116
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
+ G + + GSG ++ G +D ++ ++ ++ + K + A RD SGG +N
Sbjct: 117 SDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSVEDALYLGKRSILAAAHRDAYSGGSVN 176
Query: 197 IGVL 200
+ +
Sbjct: 177 LYHV 180
>d1irul_ d.153.1.4 (L:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 201
Score = 111 bits (279), Expect = 3e-31
Identities = 44/183 (24%), Positives = 86/183 (46%), Gaps = 4/183 (2%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TTT+A ++ +GV++ AD+R T G Y+ ++ +K+ +I+ + +G AAD L++
Sbjct: 1 TTTLAFKFRHGVIVAADSRATAGAYIASQTVKKVIEINPYLLGTMAGGAADCSFWERLLA 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
+ Y R + + L +++ +I GWD +G +Y + +
Sbjct: 61 RQCRI---YELRNKERISVAAASKLLANMVYQYKGMGLSMGTMICGWDK-RGPGLYYVDS 116
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
G GSGS Y G +D+ + +++ ++ D + + A RD SGG +N+
Sbjct: 117 EGNRISGATFSVGSGSVYAYGVMDRGYSYDLEVEQAYDLARRAIYQATYRDAYSGGAVNL 176
Query: 198 GVL 200
+
Sbjct: 177 YHV 179
>d1q5qa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 227
Score = 110 bits (277), Expect = 9e-31
Identities = 35/224 (15%), Positives = 79/224 (35%), Gaps = 18/224 (8%)
Query: 10 AGTEVTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADT 69
A + G + + + +GV+ A+ +T K++++ D + G +
Sbjct: 12 ARKGIARGRSVVVLTFRDGVLFVAENPSTAL--------HKVSELYDRLGFAAVGKYNEF 63
Query: 70 QAISDLVSYHIDL-DVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTV- 127
+ + H D+ +Y R++ L A IF ++ I +A V
Sbjct: 64 ENLRRAGIVHADMRGYSYDRRDVTGRSLANAYAQTLGTIFTEQPKPYEVEICVAEVGRVG 123
Query: 128 --KGGQVYAL-PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLA 184
K Q+Y + ++ Q+ V G + I + + +RA++ + + L
Sbjct: 124 SPKAPQLYRITYDGSIVDEQHFVVMGGTTEPIATAMRESYRADLDLEAAVGIAVNALRQG 183
Query: 185 MARDYASGGL----INIGVLENGKPMEKL-VFTQEEVQHFFNHE 223
A + + + + VL+ +P ++ E
Sbjct: 184 GAGEGEKRNVDVASLEVAVLDQSRPRRAFRRIAGTALEQLVPAE 227
>d1iruj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 204
Score = 110 bits (275), Expect = 1e-30
Identities = 35/199 (17%), Positives = 77/199 (38%), Gaps = 5/199 (2%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G +A + +N V + AD R + + + +K+ + D +Y +G A D Q ++ +
Sbjct: 7 GGAVMAMKGKNCVAIAADRRFGIQAQLVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRL 66
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQ--VYA 134
+ ++ Y +E + + + ++ G + +IAG D
Sbjct: 67 KFRLN---LYELKEGRQIKPYTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSL 123
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
+ + V G+ + + G + W NM + I + A+ RD SG
Sbjct: 124 DLIGCPMVTDDFVVSGTCAEQMYGMCESLWEPNMDPDHLFETISQAMLNAVDRDAVSGMG 183
Query: 195 INIGVLENGKPMEKLVFTQ 213
+ + ++E K + + +
Sbjct: 184 VIVHIIEKDKITTRTLKAR 202
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 250
Score = 110 bits (275), Expect = 3e-30
Identities = 39/210 (18%), Positives = 83/210 (39%), Gaps = 5/210 (2%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
+ T + +GV++ A+ R +EK+ K+++++ C +G +D ++
Sbjct: 27 IGHAGTCLGILANDGVLLAAERRNIHKLLDEVFFSEKIYKLNEDMACSVAGITSDANVLT 86
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFR-SNEGSFKAAIIIAGWDTVKGGQV 132
+ + + + LV ++ Q + + F +++ GWD G Q+
Sbjct: 87 NELRLIAQRYLLQYQEPIPCEQLVTALCDIKQAYTQFGGKRPFGVSLLYIGWDKHYGFQL 146
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEW-RANMKKQECIDFIKMGLSLAMARDYAS 191
Y SG G+ S+ + + +++ M + + L+ M S
Sbjct: 147 YQSDPSGNYGGWKATCIGNNSAAAVSMLKQDYKEGEMTLKSALALAIKVLNKTMDVSKLS 206
Query: 192 GGLINIGVL--ENGKPMEKLVFTQEEVQHF 219
+ I L ENGK + + V Q+EV+
Sbjct: 207 AEKVEIATLTRENGKTVIR-VLKQKEVEQL 235
>d1rypk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 198
Score = 108 bits (270), Expect = 6e-30
Identities = 32/186 (17%), Positives = 73/186 (39%), Gaps = 6/186 (3%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
+ ++ V++ + T G V +K ++S + +G A DT ++ +
Sbjct: 2 DIILGIRVQDSVILASSKAVTRGISVLKDSDDKTRQLSPHTLMSFAGEAGDTVQFAEYIQ 61
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKI--FRSNEGSFKAAIIIAGWDTVKGG-QVYA 134
+I L Y RE E ++ + Q++ + ++ ++I G+D K ++Y
Sbjct: 62 ANIQL---YSIREDYELSPQAVSSFVRQELAKSIRSRRPYQVNVLIGGYDKKKNKPELYQ 118
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
+ G G Y +D +R +M +E +D +K+ + R
Sbjct: 119 IDYLGTKVELPYGAHGYSGFYTFSLLDHHYRPDMTTEEGLDLLKLCVQELEKRMPMDFKG 178
Query: 195 INIGVL 200
+ + ++
Sbjct: 179 VIVKIV 184
>d1irue_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 234
Score = 107 bits (269), Expect = 2e-29
Identities = 42/213 (19%), Positives = 78/213 (36%), Gaps = 11/213 (5%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
+ G+T I + GV + + R T + EK+ +I +I C SG AD + +
Sbjct: 24 IKLGSTAIGIQTSEGVCLAVEKRITSP-LMEPSSIEKIVEIDAHIGCAMSGLIADAKTLI 82
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK------IFRSNEGSFKAAIIIAGWDTV 127
D M + +NL + + F A++ G D
Sbjct: 83 DKARVETQNHWFTYNETMTVESVTQAVSNLALQFGEEDADPGAMSRPFGVALLFGGVDE- 141
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMAR 187
KG Q++ + SG + + GS S + + + +M +E I + L M
Sbjct: 142 KGPQLFHMDPSGTFVQCDARAIGSASEGAQSSLQELYHKSMTLKEAIKSSLIILKQVMEE 201
Query: 188 DYASGGLINIGVLENGKPMEKLVFTQEEVQHFF 220
+ I + ++ G+ T+EE++
Sbjct: 202 KLNATN-IELATVQPGQNFHMF--TKEELEEVI 231
>d1iru2_ d.153.1.4 (2:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 217
Score = 106 bits (266), Expect = 3e-29
Identities = 29/201 (14%), Positives = 68/201 (33%), Gaps = 10/201 (4%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
+ GT+ + ++E GV++ AD + G+ R ++ +++++ SG AD Q +
Sbjct: 5 MVTGTSVLGVKFEGGVVIAADMLGSYGSLARFRNISRIMRVNNSTMLGASGDYADFQYLK 64
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFK---AAIIIAGWDTVKGG 130
++ + + + S ++I G+
Sbjct: 65 QVLGQMVID---EELLGDGHSYSPRAIHSWLTRAMYSRRSKMNPLWNTMVIGGYAD-GES 120
Query: 131 QVYALPASGVLTRQNCAVGGSGSSYILGYVDKE--WRANMKKQECIDFIKMGLSLAMARD 188
+ + GV G G+ + + + + + E D ++ + + RD
Sbjct: 121 FLGYVDMLGVAYEAPSLATGYGAYLAQPLLREVLEKQPVLSQTEARDLVERCMRVLYYRD 180
Query: 189 YASGGLINIGVL-ENGKPMEK 208
S + E G +E
Sbjct: 181 ARSYNRFQTATVTEKGVEIEG 201
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic)
{Rhodococcus erythropolis [TaxId: 1833]}
Length = 224
Score = 106 bits (266), Expect = 3e-29
Identities = 38/213 (17%), Positives = 74/213 (34%), Gaps = 11/213 (5%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT +A Y+ GV++ D R T G + +R+ EK+ + +GTA + L +
Sbjct: 1 TTIVALTYKGGVLLAGDRRATQGNLIASRDVEKVYVTDEYSAAGIAGTAGIAIELVRLFA 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGW-----DTVKGGQV 132
++ + R A++ + + ++ G+ D + G++
Sbjct: 61 VELEHYEKIEGVPLTFDGKANRLASMVRGNLGAAMQGLAVVPLLVGYDLDADDESRAGRI 120
Query: 133 YALPASGVLT--RQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYA 190
+ G R GSGS + + K + + ++ + L A D A
Sbjct: 121 VSYDVVGGRYEERAGYHAVGSGSLFAKSALKKIYSPDSDEETALRAAIESLYDAADDDSA 180
Query: 191 SGGLINIGVLENGKPMEKLVFTQEEVQHFFNHE 223
+GG + + TQ H
Sbjct: 181 TGGPDLTRGIY----PTAVTITQAGAVHVSEET 209
>d1rypc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 106 bits (265), Expect = 8e-29
Identities = 39/210 (18%), Positives = 81/210 (38%), Gaps = 4/210 (1%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
++ T I +G+++ A+ + T + EKL K++D I +G AD + +
Sbjct: 28 ISHAGTAIGIMASDGIVLAAERKVTSTLLEQDTSTEKLYKLNDKIAVAVAGLTADAEILI 87
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFR-SNEGSFKAAIIIAGWDTVKGGQV 132
+ H + ++ LV R +++ Q + F + I AG+D G Q+
Sbjct: 88 NTARIHAQNYLKTYNEDIPVEILVRRLSDIKQGYTQHGGLRPFGVSFIYAGYDDRYGYQL 147
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
Y SG T G+ +S + +++ +MK + I+ LS +
Sbjct: 148 YTSNPSGNYTGWKAISVGANTSAAQTLLQMDYKDDMKVDDAIELALKTLSKTTDSSALTY 207
Query: 193 GLINIGVLENGKPMEKLVF---TQEEVQHF 219
+ + G ++ +E++
Sbjct: 208 DRLEFATIRKGANDGEVYQKIFKPQEIKDI 237
>d1yara1 d.153.1.4 (A:13-233) Proteasome alpha subunit
(non-catalytic) {Archaeon Thermoplasma acidophilum
[TaxId: 2303]}
Length = 221
Score = 105 bits (263), Expect = 1e-28
Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 6/207 (2%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V G+T + ++ NGV++ +D + + EK+ I D + SG AD + +
Sbjct: 19 VKKGSTALGMKFANGVLLISDKKVR-SRLIEQNSIEKIQLIDDYVAAVTSGLVADARVLV 77
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
D + +N LV R A+ Q+ + ++I AG D G ++
Sbjct: 78 DFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGIDQ-IGPRL 136
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
+ +G + GSG ++ ++++E++ N+ ++E + L ++
Sbjct: 137 FDCDPAGTINEYKATAIGSGKDAVVSFLEREYKENLPEKEAVTLGIKALKSSLEEGEELK 196
Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
I + G QEEV+ F
Sbjct: 197 A-PEIASITVGNKYRIY--DQEEVKKF 220
>d1rype_ d.153.1.4 (E:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 242
Score = 105 bits (263), Expect = 1e-28
Identities = 44/215 (20%), Positives = 77/215 (35%), Gaps = 11/215 (5%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
+ G+T I + GV++G + R T + + EK+ +I +I C SG AD +++
Sbjct: 23 IKLGSTAIGIATKEGVVLGVEKRATSP-LLESDSIEKIVEIDRHIGCAMSGLTADARSMI 81
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-------IFRSNEGSFKAAIIIAGWDT 126
+ Y ++N L +L + R F A++IAG D
Sbjct: 82 EHARTAAVTHNLYYDEDINVESLTQSVCDLALRFGEGASGEERLMSRPFGVALLIAGHDA 141
Query: 127 VKGGQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMA 186
G Q++ SG R N GSGS + EW +++ +E + L M
Sbjct: 142 DDGYQLFHAEPSGTFYRYNAKAIGSGSEGAQAELLNEWHSSLTLKEAELLVLKILKQVME 201
Query: 187 RDYASGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221
+ + + E+
Sbjct: 202 EKLDENN-AQLSCITKQDGFKIY--DNEKTAELIK 233
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 104 bits (260), Expect = 4e-28
Identities = 38/208 (18%), Positives = 81/208 (38%), Gaps = 4/208 (1%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V GT + + +N V++G + R+TL K++KI ++ SG AD++ +
Sbjct: 25 VKRGTCAVGVKGKNCVVLGCERRSTLKLQDTRITPSKVSKIDSHVVLSFSGLNADSRILI 84
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEG-SFKAAIIIAGWD-TVKGGQ 131
+ + L A + Q+ +S F + +IAG+D +
Sbjct: 85 EKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPK 144
Query: 132 VYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYAS 191
+Y SG+ + + G S + +++K + + +K+ + +
Sbjct: 145 LYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTG 204
Query: 192 GGLINIGVLENGKPMEKLVFTQEEVQHF 219
I I V++ + L + EE+ +
Sbjct: 205 AKNIEITVVKPDSDIVAL--SSEEINQY 230
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 103 bits (258), Expect = 1e-27
Identities = 35/207 (16%), Positives = 80/207 (38%), Gaps = 5/207 (2%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V G+T + + V++G + ++ R K+ + DN+ +G AD + +
Sbjct: 25 VKKGSTAVGVRGRDIVVLGVEKKSV-AKLQDERTVRKICALDDNVCMAFAGLTADARIVI 83
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNE-GSFKAAIIIAGWDTVKGGQV 132
+ + + A+L Q+ +SN F + +I G+D ++
Sbjct: 84 NRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRL 143
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
Y SG G G+ + +++K + + + IK+ + + + G
Sbjct: 144 YQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDD-LTIKLVIKALLEVVQSGG 202
Query: 193 GLINIGVLENGKPMEKLVFTQEEVQHF 219
I + V+ + ++ L EE++ +
Sbjct: 203 KNIELAVMRRDQSLKIL--NPEEIEKY 227
>d1iru1_ d.153.1.4 (1:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 213
Score = 102 bits (254), Expect = 2e-27
Identities = 41/203 (20%), Positives = 76/203 (37%), Gaps = 12/203 (5%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G T +A E+ ++ +DTR + G + R++ K K++D SG D ++ ++
Sbjct: 9 GGTILAIAGEDFAIVASDTRLSEGFSIHTRDSPKCYKLTDKTVIGCSGFHGDCLTLTKII 68
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
+ + Y + AA L ++ + II G D G VY+
Sbjct: 69 EARLKM---YKHSNNKAMTTGAIAAMLSTILYSRRFFPYYVYNIIGGLDEEGKGAVYSFD 125
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWR---------ANMKKQECIDFIKMGLSLAMAR 187
G R + GGS S+ + +D + + + +K A R
Sbjct: 126 PVGSYQRDSFKAGGSASAMLQPLLDNQVGFKNMQNVEHVPLSLDRAMRLVKDVFISAAER 185
Query: 188 DYASGGLINIGVLENGKPMEKLV 210
D +G + I ++ E+ V
Sbjct: 186 DVYTGDALRICIVTKEGIREETV 208
>d1rypg_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 244
Score = 102 bits (255), Expect = 3e-27
Identities = 38/211 (18%), Positives = 66/211 (31%), Gaps = 9/211 (4%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V GTT+I + +GV+ + T V + K+ + +I C SG D + +
Sbjct: 27 VENGTTSIGIKCNDGVVFAVEKLITSKLLVPQK-NVKIQVVDRHIGCVYSGLIPDGRHLV 85
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
+ + P R Q ++ F + I G D G +
Sbjct: 86 NRGREEAASFKKLYKTPIPIPAFADRLGQYVQAHTLYNSVRPFGVSTIFGGVD-KNGAHL 144
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDK---EWRANMKKQECIDFIKMGLSLAMARDY 189
Y L SG A G G ++K + +E + + LA +
Sbjct: 145 YMLEPSGSYWGYKGAATGKGRQSAKAELEKLVDHHPEGLSAREAVKQAAKIIYLAHEDNK 204
Query: 190 ASGGLINIGVL--ENGKPMEKLVFTQEEVQH 218
+ I + K V + +Q
Sbjct: 205 EKDFELEISWCSLSETNGLHKFV-KGDLLQE 234
>d1irug_ d.153.1.4 (G:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 245
Score = 101 bits (252), Expect = 7e-27
Identities = 26/206 (12%), Positives = 67/206 (32%), Gaps = 2/206 (0%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V +T I ++GV+ G + Y ++L + ++ +G AD ++++
Sbjct: 30 VENSSTAIGIRCKDGVVFGVEKLVLSKLYE-EGSNKRLFNVDRHVGMAVAGLLADARSLA 88
Query: 74 DLVSY-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQV 132
D+ + +GY + A + S F + ++ + G Q+
Sbjct: 89 DIAREEASNFRSNFGYNIPLKHLADRVAMYVHAYTLYSAVRPFGCSFMLGSYSVNDGAQL 148
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
Y + SGV G ++K M ++ + + + +
Sbjct: 149 YMIDPSGVSYGYWGCAIGKARQAAKTEIEKLQMKEMTCRDIVKEVAKIIYIVHDEVKDKA 208
Query: 193 GLINIGVLENGKPMEKLVFTQEEVQH 218
+ + + + ++ +
Sbjct: 209 FELELSWVGELTNGRHEIVPKDIREE 234
>d1rypb_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 250
Score = 100 bits (251), Expect = 1e-26
Identities = 39/196 (19%), Positives = 81/196 (41%), Gaps = 8/196 (4%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V G T++ + NGV++ + +++ + K++ ++ +I SG D + +
Sbjct: 28 VKQGVTSLGIKATNGVVIATEKKSSSPLAMSET-LSKVSLLTPDIGAVYSGMGPDYRVLV 86
Query: 74 DLVSYHIDLDVAYGYREMNEPP---LVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKG 129
D Y PP LV A + Q+ +S F +++IAG D G
Sbjct: 87 DKSRKVAHTS--YKRIYGEYPPTKLLVSEVAKIMQEATQSGGVRPFGVSLLIAGHDEFNG 144
Query: 130 GQVYALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDY 189
+Y + SG G GS +++K W ++ ++ I + L ++ ++
Sbjct: 145 FSLYQVDPSGSYFPWKATAIGKGSVAAKTFLEKRWNDELELEDAIHIALLTLKESVEGEF 204
Query: 190 ASGGLINIGVLENGKP 205
+G I + ++ + P
Sbjct: 205 -NGDTIELAIIGDENP 219
>d1rypj_ d.153.1.4 (J:) Proteasome beta subunit (catalytic) {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 204
Score = 99.1 bits (246), Expect = 2e-26
Identities = 30/196 (15%), Positives = 77/196 (39%), Gaps = 6/196 (3%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G +A ++ V + D R + + + EK+ +++ +G A D ++++
Sbjct: 8 GGIVVAMTGKDCVAIACDLRLGSQSLGVSNKFEKIFHY-GHVFLGITGLATDVTTLNEMF 66
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKG-GQVYAL 135
Y + Y +E + ++ G + ++AG ++ G +
Sbjct: 67 RYKTN---LYKLKEERAIEPETFTQLVSSSLYERRFGPYFVGPVVAGINSKSGKPFIAGF 123
Query: 136 PASGV-LTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
G ++ V G+ S + G + + N++ ++ + I L A RD SG
Sbjct: 124 DLIGCIDEAKDFIVSGTASDQLFGMCESLYEPNLEPEDLFETISQALLNAADRDALSGWG 183
Query: 195 INIGVLENGKPMEKLV 210
+ +++ + +++ +
Sbjct: 184 AVVYIIKKDEVVKRYL 199
>d1iruk_ d.153.1.4 (K:) Proteasome beta subunit (catalytic) {Cow
(Bos taurus) [TaxId: 9913]}
Length = 199
Score = 98.8 bits (245), Expect = 2e-26
Identities = 29/185 (15%), Positives = 70/185 (37%), Gaps = 5/185 (2%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
I + + V++ +D + +K+ K+S+ I G A DT ++ +
Sbjct: 2 EYLIGIQGPDYVLVASDRVAASNIVQMKDDHDKMFKMSEKILLLCVGEAGDTVQFAEYIQ 61
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANL--FQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
++ L Y R E A + + +++AG+D +G +Y +
Sbjct: 62 KNVQL---YKMRNGYELSPTAAANFTRRNLADCLRSRTPYHVNLLLAGYDEHEGPALYYM 118
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLI 195
L + A G G+ L +D+ + + ++ ++ ++ L R +
Sbjct: 119 DYLAALAKAPFAAHGYGAFLTLSILDRYYTPTISRERAVELLRKCLEELQKRFILNLPTF 178
Query: 196 NIGVL 200
++ ++
Sbjct: 179 SVRII 183
>d1j2pa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 243
Score = 99.3 bits (247), Expect = 4e-26
Identities = 39/210 (18%), Positives = 85/210 (40%), Gaps = 8/210 (3%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V G T I + + GV++ AD R EK+ KI ++I SG AD + +
Sbjct: 28 VKRGATAIGIKCKEGVILIADKRVGSKLLE-KDTIEKIYKIDEHICAATSGLVADARVLI 86
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
D ++ + L + + Q+ F +++IAG + + ++
Sbjct: 87 DRARIEAQINRLTYDIPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVN--EVPKL 144
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASG 192
Y SG L G G + + +KE+R ++ + + + + L++ +
Sbjct: 145 YETDPSGALLEYKATAIGMGRMAVTEFFEKEYRDDLSFDDAMVLGLVAMGLSIESELVPE 204
Query: 193 GLINIGVL-ENGKPMEKLVFTQEEVQHFFN 221
I +G + + + +++ + EE++ +
Sbjct: 205 N-IEVGYVKVDDRTFKEV--SPEELKPYVE 231
>d1iruf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 238
Score = 97.8 bits (243), Expect = 1e-25
Identities = 31/212 (14%), Positives = 70/212 (33%), Gaps = 10/212 (4%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V G+ T+ + + ++ A R +K+ + ++I +G AD + +
Sbjct: 26 VKQGSATVGLKSKTHAVLVALKRAQSELAAHQ---KKILHVDNHIGISIAGLTADARLLC 82
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQK-IFRSNEGSFKAAIIIAGWDTVKGGQV 132
+ + R + LV + Q R + ++IAG+D G +
Sbjct: 83 NFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYDD-MGPHI 141
Query: 133 YALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMK--KQECIDFIKMGLSLAMARDYA 190
+ S G+ S Y+++ M+ E + L + +
Sbjct: 142 FQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQD 201
Query: 191 -SGGLINIGVLENGKPMEKLVFTQEEVQHFFN 221
+ ++IG++ ++V F
Sbjct: 202 LTTKNVSIGIVGKDLEFTIY--DDDDVSPFLE 231
>d1rypa_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 243
Score = 97.1 bits (241), Expect = 2e-25
Identities = 24/215 (11%), Positives = 57/215 (26%), Gaps = 11/215 (5%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
++A ++ ++ + + + + IS I +G D + +
Sbjct: 30 NINSLAVRGKDCTVVISQKKVP-DKLLDPTTVSYIFCISRTIGMVVNGPIPDARNAALRA 88
Query: 77 SY-HIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYAL 135
+ YGY + A R+ + D G +Y
Sbjct: 89 KAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKT 148
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAM------ARDY 189
+G G I ++ ++ + + + + A+
Sbjct: 149 DPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTE 208
Query: 190 ASGGLINIGVLENGKPMEKLVFTQEEVQHFFNHEA 224
S + +GV K + E ++ A
Sbjct: 209 FSKNDLEVGVATKDKFF---TLSAENIEERLVAIA 240
>d1rypf_ d.153.1.4 (F:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 233
Score = 91.7 bits (227), Expect = 2e-23
Identities = 35/216 (16%), Positives = 73/216 (33%), Gaps = 21/216 (9%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
+ G+ T+ ++ A R + K+ K +++ +G A D + +S
Sbjct: 28 IKQGSVTVGLRSNTHAVLVALKRNADELSSYQK---KIIKCDEHMGLSLAGLAPDARVLS 84
Query: 74 DLVSYHIDLDVAYGYR-EMNEPPLVYRAANLFQKIFRSNEGS-----FKAAIIIAGWDTV 127
+ + N V RA +L + N S + ++I G+D
Sbjct: 85 NYLRQQ-----CNYSSLVFNRKLAVERAGHLLCDKAQKNTQSYGGRPYGVGLLIIGYDK- 138
Query: 128 KGGQVYALPASGVLTRQNCAVGGSGSS----YILGYVDKEWRANMKKQECIDFIKMGLSL 183
G + SG +T G+ S Y+ +D + + E I +S
Sbjct: 139 SGAHLLEFQPSGNVTELYGTAIGARSQGAKTYLERTLDTFIKIDGNPDELIKAGVEAISQ 198
Query: 184 AMARDYASGGLINIGVLENGKPMEKLVFTQEEVQHF 219
++ + + ++I ++ P E V +
Sbjct: 199 SLRDESLTVDNLSIAIVGKDTPFTIY--DGEAVAKY 232
>d1irub_ d.153.1.4 (B:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 233
Score = 91.3 bits (226), Expect = 4e-23
Identities = 31/208 (14%), Positives = 68/208 (32%), Gaps = 5/208 (2%)
Query: 14 VTCGTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAIS 73
V G ++ + NGV++ + + Y R K+ I+ +I SG D + +
Sbjct: 28 VAGGAPSVGIKAANGVVLATEKKQKSILYD-ERSVHKVEPITKHIGLVYSGMGPDYRVLV 86
Query: 74 DLVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVY 133
+ LV R A++ Q+ +S ++ ++
Sbjct: 87 HRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEGRPYLF 146
Query: 134 ALPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGG 193
SG G +++K + +++ ++ I + L +
Sbjct: 147 QSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNEDLELEDAIHTAILTLKESFEGQMTEDN 206
Query: 194 LINIGVLENGKPMEKLVFTQEEVQHFFN 221
I +G+ +L T EV+ +
Sbjct: 207 -IEVGICNE-AGFRRL--TPTEVKDYLA 230
>d1irua_ d.153.1.4 (A:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 244
Score = 90.1 bits (223), Expect = 1e-22
Identities = 38/206 (18%), Positives = 82/206 (39%), Gaps = 6/206 (2%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLV 76
G T++A ++ ++ + + + L KI++NI C +G AD+++
Sbjct: 35 GLTSVAVRGKDCAVIVTQKKVP-DKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRA 93
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGS-FKAAIIIAGWDTVKGGQVYAL 135
Y E+ L R A++ Q ++ E +I+ G D +G QVY
Sbjct: 94 RYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKC 153
Query: 136 PASGVLTRQNCAVGGSGSSYILGYVDKEW--RANMKKQECIDFIKMGLSLAMARDYASGG 193
+G G + +++K+ + + ++ ++ LS ++ D+
Sbjct: 154 DPAGYYCGFKATAAGVKQTESTSFLEKKVKKKFDWTFEQTVETAITCLSTVLSIDFKPSE 213
Query: 194 LINIGVLENGKPMEKLVFTQEEVQHF 219
I +GV+ P + + T+ E+
Sbjct: 214 -IEVGVVTVENPKFR-ILTEAEIDAH 237
>d2z3ba1 d.153.1.4 (A:1-180) HslV (ClpQ) protease {Bacillus subtilis
[TaxId: 1423]}
Length = 180
Score = 80.2 bits (197), Expect = 2e-19
Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 13/187 (6%)
Query: 17 GTTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISD--NIYCCRSGTAADTQAISD 74
TT A +++ M D + T G V + + + + +G+ AD + +
Sbjct: 5 ATTIFAVQHKGRSAMSGDGQVTFGQAVVMKHTARKVRKLFNGKVLAGFAGSVADAFTLFE 64
Query: 75 LVSYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYA 134
++ + + K+ R E G+V
Sbjct: 65 KFEAKLE----EYNGNLKRAAVELAKEWRSDKVLRKLEAMLIVMNQDTLLLVSGTGEVIE 120
Query: 135 LPASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGL 194
GSG +Y L + + + + L A +
Sbjct: 121 -------PDDGILAIGSGGNYALAAGRALKKHAGESMSASEIARAALETAGEICVYTNDQ 173
Query: 195 INIGVLE 201
I + LE
Sbjct: 174 IILEELE 180
>d1m4ya_ d.153.1.4 (A:) HslV (ClpQ) protease {Thermotoga maritima
[TaxId: 2336]}
Length = 171
Score = 79.8 bits (196), Expect = 2e-19
Identities = 23/180 (12%), Positives = 50/180 (27%), Gaps = 12/180 (6%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDNIYCCRSGTAADTQAISDLVS 77
TT + +MG D + T G+ V A K+ K+ + +
Sbjct: 1 TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRF 60
Query: 78 YHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALPA 137
+ + + + ++ R E + + + +
Sbjct: 61 EAK---LREWGGNLTKAAVELAKDWRTDRVLRRLEA-------LLLVADKENIFIISGNG 110
Query: 138 SGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLINI 197
+ + A GSG Y L R + ++ +++A + I I
Sbjct: 111 EVIQPDDDAAAIGSGGPYALAAAKALLR--NTDLSAREIVEKAMTIAGEICIYTNQNIVI 168
>d1g3ka_ d.153.1.4 (A:) HslV (ClpQ) protease {Haemophilus influenzae
[TaxId: 727]}
Length = 173
Score = 79.8 bits (196), Expect = 2e-19
Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 13/184 (7%)
Query: 18 TTTIACEYENGVMMGADTRTTLGTYVCNREAEKLTKISDN-IYCCRSGTAADTQAISDLV 76
TT ++ V++G D + +LG V A K+ ++ + + +G AD + +L
Sbjct: 1 TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELF 60
Query: 77 SYHIDLDVAYGYREMNEPPLVYRAANLFQKIFRSNEGSFKAAIIIAGWDTVKGGQVYALP 136
+ + ++A K +R++ K ++ D + + +
Sbjct: 61 ERKL----------EMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIG 110
Query: 137 ASGVLTRQNCAVGGSGSSYILGYVDKEWRANMKKQECIDFIKMGLSLAMARDYASGGLIN 196
GSG +Y L + + ++ L +A +
Sbjct: 111 DVVQPEEDQILAIGSGGNYALSAARALVE--NTELSAHEIVEKSLRIAGDICVFTNTNFT 168
Query: 197 IGVL 200
I L
Sbjct: 169 IEEL 172
>d1nmpa_ c.135.1.1 (A:) Hypothetical protein YbgI {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 27.3 bits (60), Expect = 1.6
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 168 MKKQECIDFIKMGLSLAMARDYASGGLINIGVLENGKPMEKLVFT 212
MK E I L+ A DYA GL +E + ++K+V
Sbjct: 1 MKNTELEQLINEKLNSAAISDYAPNGLQ----VEGKETVQKIVTG 41
>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}
Length = 168
Score = 24.7 bits (53), Expect = 9.0
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 10/83 (12%)
Query: 4 NLPDISAGTEVTCGTTTIACEYENG----------VMMGADTRTTLGTYVCNREAEKLTK 53
+P AG V +T + + + V++ A + T V E
Sbjct: 79 EIPWAEAGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPAKGEDITIVMGVNHEAYDP 138
Query: 54 ISDNIYCCRSGTAADTQAISDLV 76
+I S ++DLV
Sbjct: 139 SRHHIISNASNEWGYANRVADLV 161
>d2phla1 b.82.1.2 (A:11-210) Seed storage 7S protein {French bean
(Phaseolus vulgaris), phaseolin [TaxId: 3885]}
Length = 200
Score = 24.5 bits (53), Expect = 9.3
Identities = 4/24 (16%), Positives = 11/24 (45%)
Query: 95 PLVYRAANLFQKIFRSNEGSFKAA 118
P + + N + +F++ G +
Sbjct: 3 PFYFNSDNSWNTLFKNQYGHIRVL 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.400
Gapped
Lambda K H
0.267 0.0493 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 844,638
Number of extensions: 37197
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 42
Length of query: 226
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 144
Effective length of database: 1,281,736
Effective search space: 184569984
Effective search space used: 184569984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)