Query psy8685
Match_columns 70
No_of_seqs 118 out of 801
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 16:37:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8685.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8685hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3646|consensus 99.8 4.2E-21 9E-26 133.6 2.0 69 2-70 207-275 (486)
2 TIGR00860 LIC Cation transport 99.8 8.5E-19 1.8E-23 122.6 6.4 62 9-70 219-281 (459)
3 KOG3645|consensus 99.7 3.6E-18 7.8E-23 119.3 5.4 69 2-70 211-280 (449)
4 KOG3643|consensus 99.4 1E-13 2.2E-18 96.7 4.6 57 14-70 226-283 (459)
5 KOG3644|consensus 99.4 2.3E-14 4.9E-19 100.7 1.2 57 14-70 235-292 (457)
6 KOG3642|consensus 99.4 4.1E-13 8.8E-18 93.9 2.9 58 13-70 233-291 (466)
7 PF02932 Neur_chan_memb: Neuro 99.0 1.2E-12 2.6E-17 79.5 -8.0 34 37-70 1-35 (237)
8 PF02931 Neur_chan_LBD: Neurot 95.6 0.027 5.8E-07 35.4 4.2 27 4-30 190-217 (217)
9 PF13119 DUF3973: Domain of un 46.3 12 0.00026 18.3 0.9 17 51-67 24-40 (41)
10 PF15102 TMEM154: TMEM154 prot 44.4 19 0.0004 22.4 1.7 19 34-52 58-76 (146)
11 PF14975 DUF4512: Domain of un 29.5 29 0.00063 19.7 0.9 13 38-50 2-14 (88)
12 COG3197 FixS Uncharacterized p 22.5 50 0.0011 17.4 0.9 24 36-59 5-29 (58)
13 PF10853 DUF2650: Protein of u 22.3 43 0.00092 16.1 0.6 12 6-17 6-17 (38)
14 PF15012 DUF4519: Domain of un 22.3 89 0.0019 16.3 1.8 19 34-52 30-48 (56)
No 1
>KOG3646|consensus
Probab=99.81 E-value=4.2e-21 Score=133.63 Aligned_cols=69 Identities=67% Similarity=1.220 Sum_probs=66.7
Q ss_pred CceeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 2 PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
+++|.+.+|+|||++|.+++|++.+|||..||-+|+++||+++.++++++|.+|||+|||+++++|++|
T Consensus 207 pakr~~~~y~cC~epY~dv~F~l~irRRTLyYgfNlIiP~lLIs~m~lLgFtlppD~gEKitL~iTilL 275 (486)
T KOG3646|consen 207 PAKREEKTYDCCPEPYPDVTFYLHIRRRTLYYGFNLIIPSLLISLMSLLGFTLPPDAGEKITLQITILL 275 (486)
T ss_pred cccceeeecccCCCCcceeEEEEEEEehhhHHHHHHHHHHHHHHHHHHhccccCccccceeeeeeehHH
Confidence 568999999999999999999999999999999999999999999999999999999999999999875
No 2
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=99.77 E-value=8.5e-19 Score=122.61 Aligned_cols=62 Identities=39% Similarity=0.709 Sum_probs=59.8
Q ss_pred ecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685 9 QYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL 70 (70)
Q Consensus 9 ~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL 70 (70)
.|.||+++|+++++++.+||+++||++++++||+++++++|++||+|++ +|||+++++|+||
T Consensus 219 ~~~~~~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~Lp~~a~~eRi~L~it~lL 281 (459)
T TIGR00860 219 TSETNTGEYPCLTFSFVLRRRPLYYLLQLYIPSILIVILSWVSFWLPADASGARVSLGITTLL 281 (459)
T ss_pred ecccCCCCcCeEEEEEEEEEcccceeeeehHHHHHHHHHhheeEecCCCCCCCcEEEEEEHHH
Confidence 6889999999999999999999999999999999999999999999999 6999999999875
No 3
>KOG3645|consensus
Probab=99.73 E-value=3.6e-18 Score=119.25 Aligned_cols=69 Identities=61% Similarity=1.083 Sum_probs=63.7
Q ss_pred CceeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCC-ceEEEEEeEeC
Q psy8685 2 PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL 70 (70)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sg-er~~l~it~lL 70 (70)
.++++...|+||++.|++++|.+.+||||.||++++++||++++++++++||+|+++| ||+++++++||
T Consensus 211 ~~~~~~~~~~~~~~~~~~i~f~l~irRkplyY~v~liiP~~lis~l~il~fflp~~~~~eki~L~it~Ll 280 (449)
T KOG3645|consen 211 TVVREEKKYDCCPGPYSDITFTITIRRKPLYYTVNLIIPCFLISFLSILGFFLPSDSGTEKVTLGITVLL 280 (449)
T ss_pred eeEEeecccCCCCCceeEEEEEEEEEeccceEEEehhhhHHHHHHHHhheEEccCCCCCceEEEEHHHHH
Confidence 3467777888999999999999999999999999999999999999999999998885 99999999875
No 4
>KOG3643|consensus
Probab=99.44 E-value=1e-13 Score=96.66 Aligned_cols=57 Identities=23% Similarity=0.504 Sum_probs=55.4
Q ss_pred CCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685 14 PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70 (70)
Q Consensus 14 ~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL 70 (70)
.|.|+.+...|.++|+.+||++++++|+++++++||++||+.-|+ .+|+.+|||++|
T Consensus 226 TG~Y~RL~l~F~l~Rnigf~ilQ~y~PS~LiVilSWVSFWin~~a~pARv~lGITTVL 283 (459)
T KOG3643|consen 226 TGNYSRLSLSFQLRRNIGFYILQTYIPSTLIVILSWVSFWINRDASPARVALGITTVL 283 (459)
T ss_pred cccceeEEEEEEEEeeccEEEEeeecchhhhhHHhHhHhhhccccchhheeeceehHH
Confidence 789999999999999999999999999999999999999999998 999999999876
No 5
>KOG3644|consensus
Probab=99.44 E-value=2.3e-14 Score=100.75 Aligned_cols=57 Identities=28% Similarity=0.522 Sum_probs=54.9
Q ss_pred CCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685 14 PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70 (70)
Q Consensus 14 ~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL 70 (70)
.|.|++++.+++++|+.+||+++.++|+.+++++||++|||++++ .+|+++|+|+||
T Consensus 235 ~G~~scL~v~~~f~R~~g~yllQ~YiPT~l~ViiSWvSFWLd~~A~PARv~LgvtsLL 292 (457)
T KOG3644|consen 235 TGVYSCLRVTFTFKRRYGYYLLQTYIPTLLIVIISWVSFWLDPKAVPARVTLGVTSLL 292 (457)
T ss_pred CcceEEEEEEEEEEEeehhhhhHHHhhhHhhhhhhhhheecCCCcccceEEehHHHHH
Confidence 578999999999999999999999999999999999999999999 899999999886
No 6
>KOG3642|consensus
Probab=99.35 E-value=4.1e-13 Score=93.94 Aligned_cols=58 Identities=21% Similarity=0.493 Sum_probs=55.4
Q ss_pred CCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685 13 CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70 (70)
Q Consensus 13 ~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL 70 (70)
..|.|+.++.+|.++|+.+||++|.++||++.++|||++||+..|+ .+|..+|||++|
T Consensus 233 ~~gey~vmtv~F~L~R~~GYf~iQ~YlPC~ltViLSwVSFWinrEs~paRt~lGITtVL 291 (466)
T KOG3642|consen 233 SSGEYSVMTVYFHLSRRQGYFIIQIYLPCILTVVLSWVSFWINREATPARTSLGITTVL 291 (466)
T ss_pred cCCCEEEEEEEEeccceeeEEEEeeccceeeeeeeeeeehhccccccccceeeeeeeee
Confidence 3578999999999999999999999999999999999999999999 999999999986
No 7
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=98.98 E-value=1.2e-12 Score=79.46 Aligned_cols=34 Identities=56% Similarity=1.027 Sum_probs=31.6
Q ss_pred EeehhHHHHHHhhheeecCCCCC-ceEEEEEeEeC
Q psy8685 37 LIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL 70 (70)
Q Consensus 37 ~i~P~~ll~~ls~~~f~lp~~sg-er~~l~it~lL 70 (70)
+++||+++++++|++||+|+++| ||+++|||+||
T Consensus 1 l~~P~~li~~~s~~~f~~~~~~~~~rv~l~it~lL 35 (237)
T PF02932_consen 1 LIIPCILIVVLSWLSFWLPPESGPERVTLGITTLL 35 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTHHHHHHHHHHHH
T ss_pred CeehHHHHHHHHHhheEeCccccccccccchhHHH
Confidence 36899999999999999999998 99999999875
No 8
>PF02931 Neur_chan_LBD: Neurotransmitter-gated ion-channel ligand binding domain ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006202 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This entry presents the extracellular ligand binding domain of these ion channels. This domain forms a pentameric arrangement in the known structure. ; GO: 0005230 extracellular ligand-gated ion channel activity, 0006810 transport, 0016020 membrane; PDB: 1LXH_B 1ABT_B 1TOS_A 1LXG_B 1IDG_B 1TOR_A 1IDH_B 3IGQ_B 3TLU_B 3UU5_A ....
Probab=95.60 E-value=0.027 Score=35.40 Aligned_cols=27 Identities=33% Similarity=0.754 Sum_probs=22.9
Q ss_pred eeeeeecccCCCC-eeeEEEEEEEeeec
Q psy8685 4 KKNEVQYECCPET-YVDITFTIQIRRRT 30 (70)
Q Consensus 4 ~~~~~~y~~~~~~-~~~i~~~~~l~R~~ 30 (70)
.++...++||++. |+.+.+++.++|+|
T Consensus 190 ~~~~~~~~~~~~~~ys~l~~~~~l~R~~ 217 (217)
T PF02931_consen 190 TRRETTYGCYNEPTYSMLSFTFTLKRRP 217 (217)
T ss_dssp EEEEEEESTSSSCSEEEEEEEEEEEEST
T ss_pred EEEEEccCCcCCCCEeeEEEEEEEEECc
Confidence 4555668888886 99999999999986
No 9
>PF13119 DUF3973: Domain of unknown function (DUF3973)
Probab=46.27 E-value=12 Score=18.27 Aligned_cols=17 Identities=41% Similarity=0.575 Sum_probs=13.9
Q ss_pred eeecCCCCCceEEEEEe
Q psy8685 51 GFTLPPDSGEKLTLVIN 67 (70)
Q Consensus 51 ~f~lp~~sger~~l~it 67 (70)
+|+++|--|||+-+|..
T Consensus 24 gfYIdPflgek~hLGMC 40 (41)
T PF13119_consen 24 GFYIDPFLGEKYHLGMC 40 (41)
T ss_pred ceeecccccceeecccc
Confidence 68888888999988753
No 10
>PF15102 TMEM154: TMEM154 protein family
Probab=44.36 E-value=19 Score=22.39 Aligned_cols=19 Identities=21% Similarity=0.405 Sum_probs=12.9
Q ss_pred EEEEeehhHHHHHHhhhee
Q psy8685 34 FFNLIVPCVLISSMALLGF 52 (70)
Q Consensus 34 ~~~~i~P~~ll~~ls~~~f 52 (70)
++.+++|.++++++-+++.
T Consensus 58 iLmIlIP~VLLvlLLl~vV 76 (146)
T PF15102_consen 58 ILMILIPLVLLVLLLLSVV 76 (146)
T ss_pred EEEEeHHHHHHHHHHHHHH
Confidence 7888999777655544433
No 11
>PF14975 DUF4512: Domain of unknown function (DUF4512)
Probab=29.49 E-value=29 Score=19.73 Aligned_cols=13 Identities=23% Similarity=0.848 Sum_probs=10.5
Q ss_pred eehhHHHHHHhhh
Q psy8685 38 IVPCVLISSMALL 50 (70)
Q Consensus 38 i~P~~ll~~ls~~ 50 (70)
.+||+++.+|-|+
T Consensus 2 CIPCivIPvLLwI 14 (88)
T PF14975_consen 2 CIPCIVIPVLLWI 14 (88)
T ss_pred ccchhHHHHHHHH
Confidence 4799998888776
No 12
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=22.47 E-value=50 Score=17.38 Aligned_cols=24 Identities=25% Similarity=0.574 Sum_probs=16.6
Q ss_pred EEeehh-HHHHHHhhheeecCCCCC
Q psy8685 36 NLIVPC-VLISSMALLGFTLPPDSG 59 (70)
Q Consensus 36 ~~i~P~-~ll~~ls~~~f~lp~~sg 59 (70)
.+.+|. +++.++.+..||.--++|
T Consensus 5 ~~Lipvsi~l~~v~l~~flWavksg 29 (58)
T COG3197 5 YILIPVSILLGAVGLGAFLWAVKSG 29 (58)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccC
Confidence 344565 677788888888876655
No 13
>PF10853 DUF2650: Protein of unknown function (DUF2650); InterPro: IPR022559 This region is found in proteins with unknown function in metazoa.
Probab=22.26 E-value=43 Score=16.07 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=8.0
Q ss_pred eeeecccCCCCe
Q psy8685 6 NEVQYECCPETY 17 (70)
Q Consensus 6 ~~~~y~~~~~~~ 17 (70)
.-.+|+||++..
T Consensus 6 ~f~yy~CCg~~~ 17 (38)
T PF10853_consen 6 FFHYYKCCGDLN 17 (38)
T ss_pred eeEEEECCCCCh
Confidence 345788997743
No 14
>PF15012 DUF4519: Domain of unknown function (DUF4519)
Probab=22.26 E-value=89 Score=16.30 Aligned_cols=19 Identities=16% Similarity=0.460 Sum_probs=12.7
Q ss_pred EEEEeehhHHHHHHhhhee
Q psy8685 34 FFNLIVPCVLISSMALLGF 52 (70)
Q Consensus 34 ~~~~i~P~~ll~~ls~~~f 52 (70)
+.++++|.+...++-++.|
T Consensus 30 v~tVVlP~l~~~~~~Ivv~ 48 (56)
T PF15012_consen 30 VFTVVLPTLAAVFLFIVVF 48 (56)
T ss_pred heeEehhHHHHHHHHHhhe
Confidence 3577889876666655554
Done!