Query psy8685
Match_columns 70
No_of_seqs 118 out of 801
Neff 7.6
Searched_HMMs 29240
Date Fri Aug 16 16:38:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8685.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8685hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ksr_A Neuronal acetylcholine 99.8 1.1E-23 3.9E-28 130.3 -9.2 65 6-70 4-68 (164)
2 2lkg_A Acetylcholine receptor; 99.8 1.3E-25 4.3E-30 136.2 -18.2 68 3-70 14-89 (140)
3 2bg9_C Acetylcholine receptor 99.7 3.7E-21 1.3E-25 130.0 -6.7 68 3-70 182-250 (369)
4 2bg9_A Acetylcholine receptor 99.7 5.1E-21 1.7E-25 129.3 -7.3 68 3-70 183-251 (370)
5 4aq5_A Acetylcholine receptor 99.7 8.2E-21 2.8E-25 131.8 -7.4 68 3-70 207-275 (461)
6 2bg9_E Acetylcholine receptor 99.7 8.8E-21 3E-25 128.1 -7.9 68 3-70 183-252 (370)
7 2bg9_B Acetylcholine receptor 99.7 3E-20 1E-24 125.6 -5.6 61 10-70 188-248 (370)
8 3rqw_A ELIC pentameric ligand 99.7 6.2E-20 2.1E-24 121.7 -7.3 65 5-70 176-240 (322)
9 3tlw_A GLR4197 protein, GLIC; 99.7 1.1E-19 3.7E-24 120.5 -6.5 66 4-70 172-237 (321)
10 4aq5_C Acetylcholine receptor 99.7 4.6E-19 1.6E-23 124.5 -6.5 67 4-70 219-286 (522)
11 4aq5_E Acetylcholine receptor 99.6 6E-19 2.1E-23 123.0 -7.4 67 4-70 191-259 (488)
12 4aq5_B Acetylcholine receptor 99.6 2.1E-18 7.1E-23 120.4 -6.8 64 4-70 218-281 (493)
13 3rhw_A Avermectin-sensitive gl 99.6 7.2E-18 2.5E-22 112.8 -6.7 57 14-70 197-254 (347)
14 2lly_A Neuronal acetylcholine 99.5 1.2E-17 3.9E-22 100.7 -8.7 46 25-70 2-47 (137)
15 1oed_C Acetylcholine receptor 99.1 2.6E-14 8.9E-19 93.5 -10.2 41 30-70 1-41 (260)
16 1oed_A Acetylcholine receptor 99.1 2E-14 6.9E-19 92.5 -10.8 41 30-70 1-41 (227)
17 1oed_B Acetylcholine receptor 99.1 2.6E-14 8.9E-19 93.1 -10.8 41 30-70 1-41 (250)
18 1oed_E Acetylcholine receptor 99.1 8.2E-14 2.8E-18 91.2 -9.5 41 30-70 1-42 (260)
19 2wn9_A Soluble acetylcholine r 98.7 6.7E-09 2.3E-13 66.2 3.9 37 3-39 190-226 (228)
20 4afh_A ACHBP; acetylcholine-bi 98.5 5.5E-08 1.9E-12 62.3 3.3 36 2-37 186-221 (230)
21 1uw6_A Acetylcholine-binding p 98.5 9.2E-08 3.1E-12 60.1 3.7 33 3-35 179-211 (211)
22 4aoe_A Acetylcholine-binding p 98.2 6E-07 2.1E-11 56.6 1.9 27 2-28 178-204 (205)
23 4aod_A Acetylcholine-binding p 98.0 1.6E-06 5.4E-11 54.6 1.7 27 2-28 178-204 (205)
24 3igq_A GLR4197 protein; plgic 97.9 3.7E-06 1.2E-10 52.7 2.4 31 3-33 167-197 (201)
25 3sq6_A ACHBP, neuronal acetylc 97.8 1.1E-05 3.9E-10 50.4 3.3 28 3-30 177-204 (204)
26 2qc1_B Acetylcholine receptor 97.7 3.8E-05 1.3E-09 48.1 4.0 28 3-30 184-212 (212)
27 2bj0_A Acetylcholine-binding p 97.6 4.7E-05 1.6E-09 47.4 3.6 27 3-29 177-203 (203)
28 3q8j_A Asteropsin A, ABU8-1; c 73.9 1.8 6E-05 19.6 1.4 15 5-19 10-25 (37)
29 2kv5_A FST, putative uncharact 20.5 25 0.00084 15.8 0.2 23 36-58 7-29 (33)
No 1
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.81 E-value=1.1e-23 Score=130.31 Aligned_cols=65 Identities=45% Similarity=0.745 Sum_probs=42.5
Q ss_pred eeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 6 NEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 6 ~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
|.....|||++|++++|++.+||+++||.+|+++||+++++++|++||+|+|+|||+++|+|++|
T Consensus 4 ~~~~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~LL 68 (164)
T 2ksr_A 4 HHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTLCISVLL 68 (164)
T ss_dssp ---------------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEEeeehHH
Confidence 33456799999999999999999999999999999999999999999999999999999998764
No 2
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.81 E-value=1.3e-25 Score=136.16 Aligned_cols=68 Identities=31% Similarity=0.373 Sum_probs=62.9
Q ss_pred ceeeeeecccCCCCe--------eeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 3 GKKNEVQYECCPETY--------VDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 3 ~~~~~~~y~~~~~~~--------~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
..++.+.|+|||++| +++++++.+||+++||.+|+++||+++++++|++||+|+|+|||++++++++|
T Consensus 14 ~~~~~~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvslgit~lL 89 (140)
T 2lkg_A 14 HILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTESKSVLK 89 (140)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHHHHHHHH
T ss_pred cEEEEEEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEEeeehHH
Confidence 456778899999977 89999999999999999999999999999999999999999999999998764
No 3
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.75 E-value=3.7e-21 Score=129.99 Aligned_cols=68 Identities=49% Similarity=0.739 Sum_probs=63.3
Q ss_pred ceeeeee-cccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 3 GKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 3 ~~~~~~~-y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
.+++... |+||+++|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++|+|+||
T Consensus 182 ~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lL 250 (369)
T 2bg9_C 182 AKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLL 250 (369)
T ss_dssp EEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHHHHHHhheEEecCCCCCeEEEEhHHHH
Confidence 3566666 9999999999999999999999999999999999999999999999999999999998875
No 4
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.74 E-value=5.1e-21 Score=129.28 Aligned_cols=68 Identities=51% Similarity=0.965 Sum_probs=63.1
Q ss_pred ceeeeeecccCC-CCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 3 GKKNEVQYECCP-ETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 3 ~~~~~~~y~~~~-~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
..++...|+||+ ++|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++|+|+||
T Consensus 183 ~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sF~lp~~~~~Rv~lgit~lL 251 (370)
T 2bg9_A 183 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLL 251 (370)
T ss_dssp EEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHHHHHHHHheecCCCCCCeEEEeHHHHH
Confidence 356677899999 58999999999999999999999999999999999999999999999999998865
No 5
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.73 E-value=8.2e-21 Score=131.75 Aligned_cols=68 Identities=51% Similarity=0.979 Sum_probs=63.9
Q ss_pred ceeeeeecccCCC-CeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 3 GKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 3 ~~~~~~~y~~~~~-~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
..++...|+||++ +|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++++|+||
T Consensus 207 ~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~liv~ls~lsF~Lp~~s~eRv~LgiT~LL 275 (461)
T 4aq5_A 207 GWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTLSISVLL 275 (461)
T ss_dssp EEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGTTHHHHHHH
T ss_pred eEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHHHHHHHheEeccccccceeehhHHHHH
Confidence 3567778999999 9999999999999999999999999999999999999999999999999998875
No 6
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.72 E-value=8.8e-21 Score=128.10 Aligned_cols=68 Identities=43% Similarity=0.685 Sum_probs=62.5
Q ss_pred ceeeeee-cccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685 3 GKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL 70 (70)
Q Consensus 3 ~~~~~~~-y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL 70 (70)
.+++... |+||+++|+++++++.+||+++||++++++||+++++++|++||+|++ +|||+++|+|+||
T Consensus 183 ~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~a~~~Rv~lgit~lL 252 (370)
T 2bg9_E 183 AKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 252 (370)
T ss_dssp CCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred eEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHHHHHHHHeEEeccccCcceeEEeeeHHH
Confidence 3455555 899999999999999999999999999999999999999999999999 6999999998775
No 7
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.72 E-value=3e-20 Score=125.62 Aligned_cols=61 Identities=48% Similarity=0.888 Sum_probs=59.1
Q ss_pred cccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 10 YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 10 y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
|+||+++|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++|+|+||
T Consensus 188 y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv~ls~~sFwlp~~~~~Rv~lgit~lL 248 (370)
T 2bg9_B 188 WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALL 248 (370)
T ss_dssp CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHHHHHHHHHHSTTTCTTHHHHHHHHHH
T ss_pred ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHHHHHhheEEccCCCCceEEEEehHHH
Confidence 8999999999999999999999999999999999999999999999999999999998875
No 8
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.69 E-value=6.2e-20 Score=121.72 Aligned_cols=65 Identities=23% Similarity=0.346 Sum_probs=60.6
Q ss_pred eeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 5 KNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 5 ~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
++...|+||+++|+++++++.+||+++||++++++||+++++++|++||+| ++|||+++++|++|
T Consensus 176 ~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~lp-~~~~Rv~l~it~lL 240 (322)
T 3rqw_A 176 DHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLE-SFSERLQTSFTLML 240 (322)
T ss_dssp TTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHTHHHHHHHHHHHHGGGGCS-SHHHHHHHHHHHHH
T ss_pred ceeeeccCCCCCeEEEEEEEEEEEeeeeeeehHHHHHHHHHHHHHHHhccC-CCCCcEEEEEehHH
Confidence 455678899999999999999999999999999999999999999999999 88999999998764
No 9
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.68 E-value=1.1e-19 Score=120.53 Aligned_cols=66 Identities=18% Similarity=0.345 Sum_probs=61.3
Q ss_pred eeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 4 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 4 ~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
+++...|+||+++|+++++++.+||+++||++++++||+++++++|++|| |+++|||+++++|+||
T Consensus 172 ~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~~ls~~sF~-p~~~~~Rv~l~it~lL 237 (321)
T 3tlw_A 172 VVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAFW-STSYEANVTLVVSTLI 237 (321)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHHHHHGGGGG-CCCHHHHHHHHHHHHH
T ss_pred EEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHHHHhheeec-cCCCCCcEEEEhhHHH
Confidence 45566789999999999999999999999999999999999999999999 8888999999998875
No 10
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.65 E-value=4.6e-19 Score=124.46 Aligned_cols=67 Identities=49% Similarity=0.774 Sum_probs=59.0
Q ss_pred eeeeeecccCCC-CeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 4 KKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 4 ~~~~~~y~~~~~-~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
+++...+.||++ .|++++|++.+||+++||++|+++||+++++++|++||+|+++|||+++++|+||
T Consensus 219 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Yii~l~iP~~liv~Ls~lsF~Lp~d~~eRisLgIT~LL 286 (522)
T 4aq5_C 219 KKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMSTAICVLL 286 (522)
T ss_dssp EEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHH
T ss_pred EEEeeeccccCCCCcceEEEEEEEecccceeeeehhhHHHHHHHHHHheeecCCCcCceEEehHHHHH
Confidence 344444455544 7999999999999999999999999999999999999999999999999999875
No 11
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.63 E-value=6e-19 Score=123.02 Aligned_cols=67 Identities=43% Similarity=0.711 Sum_probs=58.8
Q ss_pred eeeeeecccCCC-CeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685 4 KKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL 70 (70)
Q Consensus 4 ~~~~~~y~~~~~-~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL 70 (70)
+++...+.||++ .|+++++++.+||+++||++++++||+++++++|++||+|++ +|||+++++|+||
T Consensus 191 ~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~a~~eRvsLgIt~LL 259 (488)
T 4aq5_E 191 KKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 259 (488)
T ss_dssp EEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHSCSTHHHHHHHHHH
T ss_pred EEEEeeeccCCCCCcceEEEEEEEccchhheehhHhHHHHHHHHHHHHHhcCCccccCceEEEehHHHH
Confidence 444444455554 699999999999999999999999999999999999999999 6999999999875
No 12
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.61 E-value=2.1e-18 Score=120.43 Aligned_cols=64 Identities=48% Similarity=0.848 Sum_probs=57.7
Q ss_pred eeeeeecccCCCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 4 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 4 ~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
+++...|+| .|+++++++.+||+++||++++++||+++++++|++||+|+++|||+++++|+||
T Consensus 218 ~~~~~~~~~---~y~~l~~~~~lrR~~~~Y~i~l~iP~~liv~Ls~lsF~Lp~~s~eRvsLgiT~LL 281 (493)
T 4aq5_B 218 RKNWRSDDP---SYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGEKMSLSISALL 281 (493)
T ss_dssp EECCCTTSS---SBCCEEEECCCBCCCCSSTTTTHHHHHHHHHHHHHHHHSTTTCGGGGTHHHHHHH
T ss_pred EEEeecCCC---CccEEEEEEEEEeccceeeehhhhhHHHHHHHHHhEEecCCCCCceEEehHHHHH
Confidence 444444554 8999999999999999999999999999999999999999999999999999875
No 13
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.57 E-value=7.2e-18 Score=112.79 Aligned_cols=57 Identities=23% Similarity=0.466 Sum_probs=54.4
Q ss_pred CCCeeeEEEEEEEeeecceEEEEEeehhHHHHHHhhheeecCCCC-CceEEEEEeEeC
Q psy8685 14 PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70 (70)
Q Consensus 14 ~~~~~~i~~~~~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~s-ger~~l~it~lL 70 (70)
.+.|+++++++.+||+++||++++++||+++++++|++||+|+++ |||+++|+|+||
T Consensus 197 ~~~y~~l~~~~~l~R~~~~y~~~l~iP~~li~~ls~~sF~lp~~~~~~Rv~lgit~lL 254 (347)
T 3rhw_A 197 TGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTLGVTTLL 254 (347)
T ss_dssp SCEECEEEEEEEEEECSHHHHHHTHHHHHHHHHHHHTTTTSCTTCHHHHHHHHHHHHH
T ss_pred ccceeEEEEEEEEEEEeeEEEEEeehhHHHHHHHhheEEeccCCCCcceEEEEeehHH
Confidence 468999999999999999999999999999999999999999999 899999998875
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-17 Score=100.73 Aligned_cols=46 Identities=50% Similarity=0.907 Sum_probs=42.3
Q ss_pred EEeeecceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 25 QIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 25 ~l~R~~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
++||+++||.+|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~lgit~lL 47 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLL 47 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEEEeeeHH
Confidence 4799999999999999999999999999999999999999998764
No 15
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.15 E-value=2.6e-14 Score=93.54 Aligned_cols=41 Identities=56% Similarity=0.975 Sum_probs=38.7
Q ss_pred cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
+.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l~it~lL 41 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL 41 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEeehHHHHH
Confidence 57999999999999999999999999999999999998875
No 16
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.14 E-value=2e-14 Score=92.53 Aligned_cols=41 Identities=56% Similarity=0.947 Sum_probs=38.7
Q ss_pred cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
|.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l~it~lL 41 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL 41 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEeehHHHHH
Confidence 57999999999999999999999999999999999998864
No 17
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.13 E-value=2.6e-14 Score=93.10 Aligned_cols=41 Identities=54% Similarity=1.020 Sum_probs=38.7
Q ss_pred cceEEEEEeehhHHHHHHhhheeecCCCCCceEEEEEeEeC
Q psy8685 30 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70 (70)
Q Consensus 30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~sger~~l~it~lL 70 (70)
+.||++|+++||+++++++|++||+|+|+|||+++++|++|
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l~it~lL 41 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL 41 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEehhhHHH
Confidence 57999999999999999999999999999999999998875
No 18
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.10 E-value=8.2e-14 Score=91.18 Aligned_cols=41 Identities=54% Similarity=0.958 Sum_probs=38.5
Q ss_pred cceEEEEEeehhHHHHHHhhheeecCCC-CCceEEEEEeEeC
Q psy8685 30 TLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVINVLL 70 (70)
Q Consensus 30 ~~~y~~~~i~P~~ll~~ls~~~f~lp~~-sger~~l~it~lL 70 (70)
++||++|+++||+++++++|++||+|+| +|||+++++|++|
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l~it~lL 42 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEeehhHHH
Confidence 5799999999999999999999999999 7999999998875
No 19
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=98.75 E-value=6.7e-09 Score=66.20 Aligned_cols=37 Identities=27% Similarity=0.612 Sum_probs=25.7
Q ss_pred ceeeeeecccCCCCeeeEEEEEEEeeecceEEEEEee
Q psy8685 3 GKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIV 39 (70)
Q Consensus 3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~i~ 39 (70)
++++...|+||+++|++++|+|.+||+++||++++++
T Consensus 190 ~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 190 QTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp EEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred EEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 4677778999999999999999999999999999874
No 20
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=98.52 E-value=5.5e-08 Score=62.28 Aligned_cols=36 Identities=22% Similarity=0.620 Sum_probs=25.6
Q ss_pred CceeeeeecccCCCCeeeEEEEEEEeeecceEEEEE
Q psy8685 2 PGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNL 37 (70)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~~~ 37 (70)
.++|+...|+||+++|++++|++.+||+++||+.+-
T Consensus 186 ~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~~ 221 (230)
T 4afh_A 186 SAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSR 221 (230)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEEECC--------
T ss_pred EEEEEEEecCCCCCCccEEEEEEEEEEeechhhccc
Confidence 356788889999999999999999999999998764
No 21
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=98.49 E-value=9.2e-08 Score=60.12 Aligned_cols=33 Identities=36% Similarity=0.813 Sum_probs=27.8
Q ss_pred ceeeeeecccCCCCeeeEEEEEEEeeecceEEE
Q psy8685 3 GKKNEVQYECCPETYVDITFTIQIRRRTLYYFF 35 (70)
Q Consensus 3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y~~ 35 (70)
++++...|+||+++|++++|+|.+||+++||++
T Consensus 179 ~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 179 QKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp EEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred EEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 457778899999999999999999999999974
No 22
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=98.17 E-value=6e-07 Score=56.64 Aligned_cols=27 Identities=30% Similarity=0.832 Sum_probs=25.2
Q ss_pred CceeeeeecccCCCCeeeEEEEEEEee
Q psy8685 2 PGKKNEVQYECCPETYVDITFTIQIRR 28 (70)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R 28 (70)
+++|+...|+|||++|++++|++.+||
T Consensus 178 ~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 178 KQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred EEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 467899999999999999999999999
No 23
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=98.02 E-value=1.6e-06 Score=54.61 Aligned_cols=27 Identities=44% Similarity=0.907 Sum_probs=24.7
Q ss_pred CceeeeeecccCCCCeeeEEEEEEEee
Q psy8685 2 PGKKNEVQYECCPETYVDITFTIQIRR 28 (70)
Q Consensus 2 ~~~~~~~~y~~~~~~~~~i~~~~~l~R 28 (70)
.++|+...|+|||++|++++|+|.+||
T Consensus 178 ~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 178 TQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp EEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred EEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 357899999999999999999999977
No 24
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=97.95 E-value=3.7e-06 Score=52.71 Aligned_cols=31 Identities=6% Similarity=0.070 Sum_probs=17.5
Q ss_pred ceeeeeecccCCCCeeeEEEEEEEeeecceE
Q psy8685 3 GKKNEVQYECCPETYVDITFTIQIRRRTLYY 33 (70)
Q Consensus 3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~~~y 33 (70)
++|+...|+||+++|++++|++.+||+.+..
T Consensus 167 ~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~ 197 (201)
T 3igq_A 167 AVVKPANFALEDRLESKLDYQLRISRQGGHH 197 (201)
T ss_dssp EEEEC--------CCCEEEEEEEEEEC----
T ss_pred EEEEEEEeCCCCCccCeEEEEEEEEECCCCC
Confidence 5678888999999999999999999998764
No 25
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=97.84 E-value=1.1e-05 Score=50.39 Aligned_cols=28 Identities=46% Similarity=0.966 Sum_probs=25.4
Q ss_pred ceeeeeecccCCCCeeeEEEEEEEeeec
Q psy8685 3 GKKNEVQYECCPETYVDITFTIQIRRRT 30 (70)
Q Consensus 3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~~ 30 (70)
++|+...|+||+++|++++|++.+|||.
T Consensus 177 ~~~~~~~y~~c~~~y~~i~~~~~lrRr~ 204 (204)
T 3sq6_A 177 QKRSERFYECCKEPYPDVTFTVTFRKKG 204 (204)
T ss_dssp EEEEEEECSSSSSEEEEEEEEEEEEECC
T ss_pred EEEEEEeeCCCCCCcceEEEEEEEEECc
Confidence 5678889999999999999999999983
No 26
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=97.70 E-value=3.8e-05 Score=48.08 Aligned_cols=28 Identities=43% Similarity=0.884 Sum_probs=25.1
Q ss_pred ceeeeeecccCC-CCeeeEEEEEEEeeec
Q psy8685 3 GKKNEVQYECCP-ETYVDITFTIQIRRRT 30 (70)
Q Consensus 3 ~~~~~~~y~~~~-~~~~~i~~~~~l~R~~ 30 (70)
.+++...|+||+ ++|++++|+|.+||+|
T Consensus 184 ~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 184 GWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp EEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred EEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 456778899999 8999999999999986
No 27
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=97.62 E-value=4.7e-05 Score=47.40 Aligned_cols=27 Identities=33% Similarity=0.749 Sum_probs=24.5
Q ss_pred ceeeeeecccCCCCeeeEEEEEEEeee
Q psy8685 3 GKKNEVQYECCPETYVDITFTIQIRRR 29 (70)
Q Consensus 3 ~~~~~~~y~~~~~~~~~i~~~~~l~R~ 29 (70)
.+++...|+||+|+|++++|+|.+||+
T Consensus 177 ~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 177 QSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp EEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred EEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 467778899999999999999999996
No 28
>3q8j_A Asteropsin A, ABU8-1; cystine knot, marine sponge, marine knottin, toxin; HET: PCA; 0.87A {Asteropus}
Probab=73.93 E-value=1.8 Score=19.59 Aligned_cols=15 Identities=33% Similarity=0.618 Sum_probs=10.4
Q ss_pred eeeeecccCCC-Ceee
Q psy8685 5 KNEVQYECCPE-TYVD 19 (70)
Q Consensus 5 ~~~~~y~~~~~-~~~~ 19 (70)
-+..+|.|||+ .-.+
T Consensus 10 cnvqfypccpglgltc 25 (37)
T 3q8j_A 10 CNVQFYPCCPGLGLTC 25 (37)
T ss_dssp EETTTBCBCTTSCEEE
T ss_pred cceEEecCCCCCCcEe
Confidence 35678999998 4433
No 29
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=20.54 E-value=25 Score=15.77 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=18.9
Q ss_pred EEeehhHHHHHHhhheeecCCCC
Q psy8685 36 NLIVPCVLISSMALLGFTLPPDS 58 (70)
Q Consensus 36 ~~i~P~~ll~~ls~~~f~lp~~s 58 (70)
+++.|-++=+++.++.-||....
T Consensus 7 ~IIaPivVGvvl~L~d~WLn~r~ 29 (33)
T 2kv5_A 7 LVIAPIFVGLVLEMISRVLDEED 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHcccc
Confidence 35788888899999999998754
Done!