RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8685
(70 letters)
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 111 bits (278), Expect = 4e-31
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MPGKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
G K+ V Y CCP+ Y+DIT+ ++R LY+ N+I+PC+L S + +L F LP DSG
Sbjct: 205 YRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG 264
Query: 60 EKLTLVINVLL 70
EK+TL I+VLL
Sbjct: 265 EKMTLSISVLL 275
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 102 bits (256), Expect = 3e-28
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MPGKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
G K+ V Y CCP+ Y+DIT+ ++R LY+ N+I+PC+L S + +L F LP DSG
Sbjct: 181 YRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLFSFLTVLVFYLPTDSG 240
Query: 60 EKLTLVINVLL 70
EK+TL I+VLL
Sbjct: 241 EKMTLSISVLL 251
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 99.6 bits (248), Expect = 4e-27
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
P +KN + +Y D+TF + I+R+ L+Y IVPC+LIS +A+L F LPPD+GE
Sbjct: 182 KPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGE 238
Query: 61 KLTLVINVLL 70
K++L I+ LL
Sbjct: 239 KMSLSISALL 248
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 98.8 bits (246), Expect = 6e-27
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MPGKKNEVQYEC-CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
P KKN + Y D+TF + IRR+ L+Y N I PCVLIS +A L F LP +SG
Sbjct: 180 KPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESG 239
Query: 60 EKLTLVINVLL 70
EK++ I VLL
Sbjct: 240 EKMSTAICVLL 250
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 99.5 bits (247), Expect = 1e-26
Identities = 34/71 (47%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MPGKKNEVQYEC-CPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSG 59
P KKN + Y D+TF + IRR+ L+Y N I PCVLIS +A L F LP +SG
Sbjct: 216 KPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLISFLAALAFYLPAESG 275
Query: 60 EKLTLVINVLL 70
EK++ I VLL
Sbjct: 276 EKMSTAICVLL 286
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 93.8 bits (233), Expect = 2e-26
Identities = 29/67 (43%), Positives = 40/67 (59%)
Query: 4 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLT 63
+ ++ F RR+ L+Y NLI+PCVLI+S+A+L F LP D GEK+T
Sbjct: 2 HHHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMT 61
Query: 64 LVINVLL 70
L I+VLL
Sbjct: 62 LCISVLL 68
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 97.7 bits (243), Expect = 2e-26
Identities = 30/72 (41%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 1 MPGKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD-S 58
P KKN + + +I F + I+R+ L+Y N+I PCVLISS+ +L + LP
Sbjct: 181 RPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAG 240
Query: 59 GEKLTLVINVLL 70
G+K TL I+VLL
Sbjct: 241 GQKCTLSISVLL 252
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 96.4 bits (239), Expect = 1e-25
Identities = 32/70 (45%), Positives = 47/70 (67%), Gaps = 3/70 (4%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
P +KN + +Y D+TF + I+R+ L+Y IVPC+LIS +A+L F LPPD+GE
Sbjct: 215 KPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILISILAILVFYLPPDAGE 271
Query: 61 KLTLVINVLL 70
K++L I+ LL
Sbjct: 272 KMSLSISALL 281
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 94.8 bits (235), Expect = 4e-25
Identities = 30/72 (41%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 1 MPGKKNEVQYECCPET-YVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS- 58
P KKN + + +I F + I+R+ L+Y N+I PCVLISS+ +L + LP +
Sbjct: 188 RPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLISSLVVLVYFLPAQAG 247
Query: 59 GEKLTLVINVLL 70
G+K TL I+VLL
Sbjct: 248 GQKCTLSISVLL 259
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 90.0 bits (224), Expect = 8e-24
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 1/70 (1%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGE 60
+ + + ++I R+ Y N+I+P + I ++ F
Sbjct: 169 FTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFILFISWTAF-WSTSYEA 227
Query: 61 KLTLVINVLL 70
+TLV++ L+
Sbjct: 228 NVTLVVSTLI 237
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 79.2 bits (195), Expect = 3e-21
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 10 YECCP-ETYVDITFTIQIRRRT------LYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 62
C V+ I++ + LY+ N+I PC S + L F LP DSGEK+
Sbjct: 22 KICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKM 81
Query: 63 TLVINVLL 70
T +VL
Sbjct: 82 TESKSVLK 89
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 73.3 bits (180), Expect = 7e-19
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 26 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
L+Y NLI+PC+LIS + +L F LP + GEK+TL I+VLL
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLL 47
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 70.6 bits (173), Expect = 5e-17
Identities = 12/40 (30%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFF--NLI 38
+ Y CCPE Y+D+ ++ R R F NL
Sbjct: 188 ATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNLF 227
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 69.9 bits (171), Expect = 8e-17
Identities = 9/43 (20%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFFN--LIVPC 41
++ EV Y CC YV++ + + +R ++ L
Sbjct: 185 NSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYSRDLAHHH 227
>1oed_C Acetylcholine receptor protein, delta chain; ION
channel/receptor, ION channel, tubular crystal,
transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
PDB: 1a11_A 1cek_A 1eq8_A
Length = 260
Score = 68.4 bits (166), Expect = 4e-16
Identities = 23/40 (57%), Positives = 29/40 (72%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
L+Y N I PCVLIS +A L F LP +SGEK++ I+VLL
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL 41
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 68.5 bits (168), Expect = 6e-16
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 7/73 (9%)
Query: 4 KKNEVQYECC------PETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPD 57
++++Y+ + IT I R YY ++ I+P LI + + F L
Sbjct: 169 HISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESF 228
Query: 58 SGEKLTLVINVLL 70
S E+L ++L
Sbjct: 229 S-ERLQTSFTLML 240
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 68.3 bits (167), Expect = 9e-16
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Query: 4 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKL 62
Y + TIQ++R +Y L +P ++ ++ + F + ++
Sbjct: 187 STTYCTSVTNTGIYSCLRTTIQLKREFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARV 246
Query: 63 TLVINVLL 70
TL + LL
Sbjct: 247 TLGVTTLL 254
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 67.2 bits (163), Expect = 1e-15
Identities = 22/40 (55%), Positives = 31/40 (77%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
L+Y I+PC+LIS +A+L F LPPD+GEK++L I+ LL
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL 41
>1oed_A Acetylcholine receptor protein, alpha chain; ION
channel/receptor, ION channel, tubular crystal,
transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
PDB: 1dxz_A 3mra_A 2k59_B
Length = 227
Score = 67.1 bits (163), Expect = 1e-15
Identities = 23/40 (57%), Positives = 30/40 (75%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
LY+ N+I+PC+L S + L F LP DSGEK+TL I+VLL
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL 41
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 63.4 bits (154), Expect = 2e-14
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYY 33
+ KKN V Y CCPE Y D+ ++ R++
Sbjct: 177 VTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSE 209
>1oed_E Acetylcholine receptor protein, gamma chain; ION
channel/receptor, ION channel, tubular crystal,
transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 58.0 bits (139), Expect = 3e-12
Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)
Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLVINVLL 70
L+Y N+I PCVLISS+ +L + LP +G +K TL I+VLL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 56.7 bits (137), Expect = 5e-12
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRR 29
N +Y CC Y DI T R++
Sbjct: 175 ATQSLNRKKYSCCENMYDDIEITFAFRKK 203
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 52.0 bits (125), Expect = 3e-10
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 1 MPGKKNEVQYECCP-ETYVDITFTIQIRRR 29
G K+ V Y CCP Y+DIT+ ++R
Sbjct: 182 ARGWKHWVFYSCCPTTPYLDITYHFVMQRL 211
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 52.1 bits (125), Expect = 3e-10
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRR 29
+ K++E YECC E Y D+TFT+ R++
Sbjct: 175 VTQKRSERFYECCKEPYPDVTFTVTFRKK 203
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 50.8 bits (122), Expect = 8e-10
Identities = 2/35 (5%), Positives = 10/35 (28%)
Query: 1 MPGKKNEVQYECCPETYVDITFTIQIRRRTLYYFF 35
+ + + ++I R+ ++
Sbjct: 165 FTAVVKPANFALEDRLESKLDYQLRISRQGGHHHH 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 0.73
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 6/25 (24%)
Query: 43 LISSMALLGFTLPPDSGEKLTLVIN 67
L +S+ L DS L I
Sbjct: 25 LQASLKLYA----DDSAP--ALAIK 43
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 24.6 bits (53), Expect = 3.6
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 30/61 (49%)
Query: 14 PETYVDIT-FTIQIRRRTLYYFFNLIVPCVLISSMALL------GFTLPPDS-------G 59
+ + T FT Q P + + A G +P D+ G
Sbjct: 1722 EKGLLSATQFT-Q--------------PALTLMEKAAFEDLKSKGL-IPADATFAGHSLG 1765
Query: 60 E 60
E
Sbjct: 1766 E 1766
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.145 0.444
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,075,769
Number of extensions: 49668
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 126
Number of HSP's successfully gapped: 29
Length of query: 70
Length of database: 6,701,793
Length adjustment: 40
Effective length of query: 30
Effective length of database: 5,584,953
Effective search space: 167548590
Effective search space used: 167548590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.9 bits)