RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8685
         (70 letters)



>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 260

 Score = 62.5 bits (151), Expect = 3e-14
 Identities = 23/40 (57%), Positives = 29/40 (72%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y  N I PCVLIS +A L F LP +SGEK++  I+VLL
Sbjct: 2  LFYVINFITPCVLISFLASLAFYLPAESGEKMSTAISVLL 41


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 250

 Score = 61.7 bits (149), Expect = 5e-14
 Identities = 22/40 (55%), Positives = 31/40 (77%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          L+Y    I+PC+LIS +A+L F LPPD+GEK++L I+ LL
Sbjct: 2  LFYIVYTIIPCILISILAILVFYLPPDAGEKMSLSISALL 41


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 227

 Score = 59.7 bits (144), Expect = 2e-13
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVINVLL 70
          LY+  N+I+PC+L S +  L F LP DSGEK+TL I+VLL
Sbjct: 2  LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTLSISVLL 41


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
          {Marbled electric ray (Torpedo marmorata) [TaxId:
          7788]}
          Length = 260

 Score = 57.1 bits (137), Expect = 3e-12
 Identities = 22/41 (53%), Positives = 30/41 (73%), Gaps = 1/41 (2%)

Query: 31 LYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVINVLL 70
          L+Y  N+I PCVLISS+ +L + LP  + G+K TL I+VLL
Sbjct: 2  LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTLSISVLL 42


>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 53.6 bits (128), Expect = 4e-11
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 1   MPGKKNEVQYECCPETYVDITFTIQIRRR 29
           +  KKN V Y CCPE Y D+  ++  R++
Sbjct: 177 VTQKKNSVTYSCCPEAYEDVEVSLNFRKK 205


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.145    0.444 

Gapped
Lambda     K      H
   0.267   0.0501    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 266,800
Number of extensions: 9860
Number of successful extensions: 32
Number of sequences better than 10.0: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 6
Length of query: 70
Length of database: 2,407,596
Length adjustment: 38
Effective length of query: 32
Effective length of database: 1,885,856
Effective search space: 60347392
Effective search space used: 60347392
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)