Query psy8686
Match_columns 176
No_of_seqs 123 out of 945
Neff 5.2
Searched_HMMs 29240
Date Fri Aug 16 16:39:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8686.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8686hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aq5_A Acetylcholine receptor 100.0 1.7E-30 5.8E-35 235.3 0.9 140 2-175 174-314 (461)
2 2bg9_C Acetylcholine receptor 100.0 3.8E-30 1.3E-34 225.9 1.5 137 2-175 152-289 (369)
3 2bg9_E Acetylcholine receptor 100.0 1.6E-30 5.6E-35 228.0 -0.9 141 2-175 149-291 (370)
4 2bg9_B Acetylcholine receptor 100.0 5.7E-30 1.9E-34 224.9 2.4 138 2-175 150-287 (370)
5 2bg9_A Acetylcholine receptor 100.0 3.2E-30 1.1E-34 226.2 0.6 140 2-175 150-290 (370)
6 3tlw_A GLR4197 protein, GLIC; 100.0 9.3E-29 3.2E-33 212.2 7.5 138 2-175 138-275 (321)
7 4aq5_C Acetylcholine receptor 99.9 6.3E-29 2.2E-33 228.0 2.4 141 2-175 173-325 (522)
8 3rqw_A ELIC pentameric ligand 99.9 5.8E-28 2E-32 207.3 6.2 137 2-175 134-278 (322)
9 4aq5_E Acetylcholine receptor 99.9 6.5E-29 2.2E-33 226.2 0.1 141 2-175 149-298 (488)
10 4aq5_B Acetylcholine receptor 99.9 1.9E-28 6.6E-33 223.3 2.5 138 2-175 174-320 (493)
11 2ksr_A Neuronal acetylcholine 99.9 2.5E-28 8.4E-33 195.9 -0.1 101 45-175 7-107 (164)
12 2lkg_A Acetylcholine receptor; 99.9 4.6E-30 1.6E-34 201.3 -11.3 108 38-175 13-128 (140)
13 3rhw_A Avermectin-sensitive gl 99.9 2.1E-26 7.2E-31 199.7 8.1 138 2-175 152-292 (347)
14 2lly_A Neuronal acetylcholine 99.9 1.2E-23 4.2E-28 163.9 1.2 85 61-175 2-86 (137)
15 1oed_C Acetylcholine receptor 99.8 8.8E-21 3E-25 161.5 -4.8 80 66-175 1-80 (260)
16 1oed_A Acetylcholine receptor 99.8 9.4E-21 3.2E-25 158.5 -5.2 80 66-175 1-80 (227)
17 1oed_B Acetylcholine receptor 99.7 1.3E-20 4.5E-25 159.6 -6.4 80 66-175 1-80 (250)
18 1oed_E Acetylcholine receptor 99.7 3.6E-20 1.2E-24 157.7 -4.9 80 66-175 1-81 (260)
19 2wn9_A Soluble acetylcholine r 99.3 5.6E-12 1.9E-16 104.0 7.8 70 2-75 157-226 (228)
20 1uw6_A Acetylcholine-binding p 99.2 4.6E-11 1.6E-15 97.1 8.5 66 2-71 145-211 (211)
21 4aoe_A Acetylcholine-binding p 99.2 2.5E-11 8.7E-16 99.4 6.5 58 2-64 147-204 (205)
22 4aod_A Acetylcholine-binding p 99.2 3.1E-11 1E-15 98.7 5.7 58 2-64 147-204 (205)
23 4afh_A ACHBP; acetylcholine-bi 99.2 4.4E-11 1.5E-15 99.3 6.7 66 2-72 154-220 (230)
24 3igq_A GLR4197 protein; plgic 99.1 1.3E-10 4.3E-15 94.5 6.6 65 2-70 134-198 (201)
25 2bj0_A Acetylcholine-binding p 98.9 2.1E-09 7.2E-14 86.8 8.5 61 2-65 143-203 (203)
26 2qc1_B Acetylcholine receptor 98.9 2.2E-09 7.6E-14 87.2 8.6 61 2-66 151-212 (212)
27 3sq6_A ACHBP, neuronal acetylc 98.9 1.6E-09 5.5E-14 87.9 7.8 59 2-66 146-204 (204)
28 1vry_A Glycine receptor alpha- 97.7 3.2E-06 1.1E-10 59.9 -0.9 44 131-175 8-51 (76)
29 1mot_A Glycine receptor alpha- 41.7 0.39 1.3E-05 26.9 -4.9 21 131-151 8-28 (28)
No 1
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=99.96 E-value=1.7e-30 Score=235.33 Aligned_cols=140 Identities=39% Similarity=0.742 Sum_probs=132.9
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLI 80 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y~~~livP~~li 80 (176)
.|+++++++...+ +++++++|.+||||++. +...+++...|+||++ +|+++++++.+|||++||.+++++||+++
T Consensus 174 ~y~~~~v~l~~~~-~~~~l~~~~~~~eW~l~---~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~Y~i~l~iP~~li 249 (461)
T 4aq5_A 174 TYDGTKVSISPES-DRPDLSTFMESGEWVMK---DYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLF 249 (461)
T ss_dssp SCCTTTEEEECCC-CCCSGGGCCTTCSSEEE---EEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHH
T ss_pred ccCCceEEEEecc-ccccHHhhhccCceEEe---eeeeEEEEEeecCcCCCCcceEEEEEEEEecccceeeehhhhHHHH
Confidence 5889999998754 46899999999999999 8888888888999999 99999999999999999999999999999
Q ss_pred HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686 81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160 (176)
Q Consensus 81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg 160 (176)
+++++++||+|+++|||+++ |+|++|++++|+..+++.+|++|+++|+||
T Consensus 250 v~ls~lsF~Lp~~s~eRv~L------------------------------giT~LLt~tvfl~~v~~~LP~tS~~vplI~ 299 (461)
T 4aq5_A 250 SFLTVLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVIVELIPSTSSAVPLIG 299 (461)
T ss_dssp HHHHHHHHHHHHHCGGGTTH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHheEeccccccceeeh------------------------------hHHHHHHHHHHHHHHHhhcCcccCCcCHHH
Confidence 99999999999999999999 999999999999999999999998899999
Q ss_pred HHHHHHHHHHHHHHh
Q psy8686 161 THHRLIFLIIYYLLL 175 (176)
Q Consensus 161 ~~~~~~~~~v~~~ll 175 (176)
+|+.++|++++++++
T Consensus 300 ~y~~~~m~~v~~sll 314 (461)
T 4aq5_A 300 KYMLFTMIFVISSII 314 (461)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999986
No 2
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=3.8e-30 Score=225.90 Aligned_cols=137 Identities=38% Similarity=0.602 Sum_probs=129.1
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeee-eccCCCceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLI 80 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~-~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li 80 (176)
.|+++++++.. +.|+++|.+||||++. +...++++.. |+||++.|+++++++.+|||++||.+++++||+++
T Consensus 152 ~y~~~~i~l~~----~~~~~~~~~~~ew~l~---~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li 224 (369)
T 2bg9_C 152 NYNANEISMDL----IIDPEAFTENGEWEII---HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFITPCVLI 224 (369)
T ss_dssp SCCTTTCEEEC----CCGGGSCCTTSSEEEE---ECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSHHHHHHHHHHHH
T ss_pred cccCceEEEEE----ecccccceeCCEEEEe---eeeEEEEEEecCCCCCCCccEEEEEEEEEEccceeEEEEcchHHHH
Confidence 47888998886 3678899999999999 8888888877 99999999999999999999999999999999999
Q ss_pred HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686 81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160 (176)
Q Consensus 81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg 160 (176)
+++++++||+|+++|||+++ |+|++|++++++..+++.+|++|+.+|+||
T Consensus 225 v~ls~~sF~lp~~~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i~ 274 (369)
T 2bg9_C 225 SFLAALAFYLPAESGEKMST------------------------------AICVLLAQAVFLLLTSQRLPETALAVPLIG 274 (369)
T ss_dssp HHHHHHHHHHHHHHTTCHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHTSCCCH
T ss_pred HHHHhheEEecCCCCCeEEE------------------------------EhHHHHHHHHHHHHHHHhCCCCccCccHHH
Confidence 99999999999999999999 999999999999999999999997799999
Q ss_pred HHHHHHHHHHHHHHh
Q psy8686 161 THHRLIFLIIYYLLL 175 (176)
Q Consensus 161 ~~~~~~~~~v~~~ll 175 (176)
.|+..||++++++++
T Consensus 275 ~~~~~~~~~v~~sll 289 (369)
T 2bg9_C 275 KYLMFIMSLVTGVVV 289 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 3
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=1.6e-30 Score=228.02 Aligned_cols=141 Identities=35% Similarity=0.598 Sum_probs=131.3
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeee-eccCCCceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQ-YECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLI 80 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~-~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li 80 (176)
.|+++++++...+++++++++|.+||||++. +...++++.. |+||++.|+++++++.+|||++||.+++++||+++
T Consensus 149 ~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~---~~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li 225 (370)
T 2bg9_E 149 TYNAHEVNLQLSAEEGIDPEDFTENGEWTIR---HRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINIIAPCVLI 225 (370)
T ss_dssp SSCTTSCCEECCCSCCCGGGSCCTTSSEEEE---ECCCCEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHHHHHHHHH
T ss_pred ccccceeEEEecCCCcccHhhcccccEEEEe---cceeEEEEEecccCCCCCCcEEEEEEEEEEccCceeEEEehhHHHH
Confidence 4789999998765436889999999999999 8888777776 99999999999999999999999999999999999
Q ss_pred HHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccch
Q psy8686 81 SSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLI 159 (176)
Q Consensus 81 ~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlI 159 (176)
+++++++||+|++ +|||+++ |+|++|++++|+..+++.+|++|+.+|+|
T Consensus 226 v~ls~~sFwlp~~a~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i 275 (370)
T 2bg9_E 226 SSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFLIAQKVPETSLNVPLI 275 (370)
T ss_dssp HHHHHHHHHHHHHSCGGGHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHeEEeccccCcceeEE------------------------------eeeHHHHHHHHHHHHHHhCCCccCCCChH
Confidence 9999999999999 7999999 99999999999999999999999779999
Q ss_pred HHHHHHHHHHHHHHHh
Q psy8686 160 GTHHRLIFLIIYYLLL 175 (176)
Q Consensus 160 g~~~~~~~~~v~~~ll 175 (176)
|.|+..+|++++++++
T Consensus 276 ~~~~~~~~~~v~~sll 291 (370)
T 2bg9_E 276 GKYLIFVMFVSLVIVT 291 (370)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998875
No 4
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=5.7e-30 Score=224.86 Aligned_cols=138 Identities=37% Similarity=0.637 Sum_probs=128.8
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS 81 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~ 81 (176)
.|+++++++....++++++++|.+||||++. +...+++ |+||++.|+++++++.+|||++||.+++++||++++
T Consensus 150 ~y~~~~i~l~~~~~~~~~~~~~~~~~eW~l~---~~~~~~~---y~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~liv 223 (370)
T 2bg9_B 150 TYDTSEVILQHALDAMINQDAFTENGQWSIE---HKPSRKN---WRSDDPSYEDVTFYLIIQRKPLFYIVYTIVPCILIS 223 (370)
T ss_dssp SCCBTSCEEECSCCCCCSTTSCCTTCSSEEC---CCCEEEC---CCTTSSSBCCEEEECCEECCCCSSHHHHHHHHHHHH
T ss_pred cccccEEEEEeccCCccccccccccceEEEe---ccceEEe---ecCCCCCccEEEEEEEEEEcccceeeeecchHHHHH
Confidence 4789999999733346889999999999999 7777665 899999999999999999999999999999999999
Q ss_pred HHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchHH
Q psy8686 82 SMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGT 161 (176)
Q Consensus 82 ~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~ 161 (176)
++++++||+|+++|||+++ |+|++|++++++..+++.+|++|+.+|+||.
T Consensus 224 ~ls~~sFwlp~~~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i~~ 273 (370)
T 2bg9_B 224 ILAILVFYLPPDAGEKMSL------------------------------SISALLALTVFLLLLADKVPETSLSVPIIIS 273 (370)
T ss_dssp HHHHHHHHSTTTCTTHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHTTSCCCSH
T ss_pred HHHhheEEccCCCCceEEE------------------------------EehHHHHHHHHHHHHHhhCCCccccccHHHH
Confidence 9999999999999999999 9999999999999999999999988999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8686 162 HHRLIFLIIYYLLL 175 (176)
Q Consensus 162 ~~~~~~~~v~~~ll 175 (176)
|+..||++++++++
T Consensus 274 ~~~~~~~~v~~sll 287 (370)
T 2bg9_B 274 YLMFIMILVAFSVI 287 (370)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 5
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=99.95 E-value=3.2e-30 Score=226.22 Aligned_cols=140 Identities=39% Similarity=0.742 Sum_probs=131.4
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEeccceeEEEEehhhHHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNLIVPCVLI 80 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y~~~livP~~li 80 (176)
.|+++++++...+ +++++++|..+|||++. +...++++..|+||++ +|+++++++.+||+++||.+++++||+++
T Consensus 150 ~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li 225 (370)
T 2bg9_A 150 TYDGTKVSISPES-DRPDLSTFMESGEWVMK---DYRGWKHWVYYTCCPDTPYLDITYHFIMQRIPLYFVVNVIIPCLLF 225 (370)
T ss_dssp SCCTTTEEEECCC-CCCSTTSCCTTCSSEEE---EEEEEEEECCCSSSSSCCCEEEEEEEEEECCCTHHHHHHHHHHHHH
T ss_pred cccCcEEEEEecC-CCcccccccccceEEEE---cceEEEEEEecCCCCCCCeeEEEEEEEEEEccchhhhhhhhHHHHH
Confidence 4789999998754 45889999999999999 8888888888999994 89999999999999999999999999999
Q ss_pred HHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchH
Q psy8686 81 SSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160 (176)
Q Consensus 81 ~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg 160 (176)
+++++++||+|+++|||+++ |+|++|++++|+..+++.+|++|+++|+||
T Consensus 226 v~ls~~sF~lp~~~~~Rv~l------------------------------git~lLt~t~~~~~~~~~lP~~S~~vp~i~ 275 (370)
T 2bg9_A 226 SFLTVLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVIVELIPSTSSAVPLIG 275 (370)
T ss_dssp HHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHSCCCG
T ss_pred HHHHHHheecCCCCCCeEEE------------------------------eHHHHHHHHHHHHHHHhhCCCCcCCCCHHH
Confidence 99999999999999999999 999999999999999999999997799999
Q ss_pred HHHHHHHHHHHHHHh
Q psy8686 161 THHRLIFLIIYYLLL 175 (176)
Q Consensus 161 ~~~~~~~~~v~~~ll 175 (176)
.|+..||++++++++
T Consensus 276 ~~~~~~~~~v~~sl~ 290 (370)
T 2bg9_A 276 KYMLFTMIFVISSII 290 (370)
T ss_dssp GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999876
No 6
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=99.95 E-value=9.3e-29 Score=212.18 Aligned_cols=138 Identities=16% Similarity=0.246 Sum_probs=129.2
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLIS 81 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~ 81 (176)
.|+++++++...+ +..+.+++.+++||++. +...+++...|+||++.|+++++++.+|||++||.+++++||++++
T Consensus 138 ~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~~iP~~li~ 213 (321)
T 3tlw_A 138 SVDTRNIVLAVDL-EKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISRQYFSYIPNIILPMLFIL 213 (321)
T ss_dssp CCSSCCEEEEECG-GGCEECTTCCBTTEEEE---EEEEEEEEEEEEETTEEEEEEEEEEEEEECCTTHHHHTHHHHHHHH
T ss_pred cCChhhEEEEEcC-CcccccccccccceEEE---eeEeEEeeEEecCCCCceeEEEEEEEEEEeeceeehhHHHHHHHHH
Confidence 4789999999864 35777889999999999 8888888888999999999999999999999999999999999999
Q ss_pred HHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchHH
Q psy8686 82 SMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGT 161 (176)
Q Consensus 82 ~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~ 161 (176)
++++++|| |+++|||+++ |+|++|++++|+..+++.+|++|+ +|+||.
T Consensus 214 ~ls~~sF~-p~~~~~Rv~l------------------------------~it~lL~~t~~~~~~~~~lP~~s~-vp~i~~ 261 (321)
T 3tlw_A 214 FISWTAFW-STSYEANVTL------------------------------VVSTLIAHIAFNILVETCLPKTPY-MTYTGA 261 (321)
T ss_dssp HHHGGGGG-CCCHHHHHHH------------------------------HHHHHHHHHHHHHHHCCCCCCCSS-CCHHHH
T ss_pred HHhheeec-cCCCCCcEEE------------------------------EhhHHHHHHHHHHHHHhhCCCccc-cHHHHH
Confidence 99999999 8888999999 999999999999999999999995 999999
Q ss_pred HHHHHHHHHHHHHh
Q psy8686 162 HHRLIFLIIYYLLL 175 (176)
Q Consensus 162 ~~~~~~~~v~~~ll 175 (176)
|+..||++++++++
T Consensus 262 ~~~~~~~~v~~sll 275 (321)
T 3tlw_A 262 IIFMIYLFYFVAVI 275 (321)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999886
No 7
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=99.94 E-value=6.3e-29 Score=228.00 Aligned_cols=141 Identities=37% Similarity=0.602 Sum_probs=125.4
Q ss_pred CccCceEEEEEcCCC-----------CcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEecccee
Q psy8686 2 LSLSNTLDLILKDEA-----------GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYY 69 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~-----------~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y 69 (176)
.|+++++++...+++ .+|.++|.+||||++. +...+++...+.||++ .|++++|++.+|||++||
T Consensus 173 ~Y~~~~v~l~~~~~~~~~~~~~~~~~~~d~~~f~~~gEW~l~---~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y 249 (522)
T 4aq5_C 173 NYNANEISMDLMTDTIDGKDYPIEWIIIDPEAFTENGEWEII---HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFY 249 (522)
T ss_dssp TCCTTTCCEEC---------------CCSTTSCCTTCSEEEE---ECCEEEEECCCSSCSSCCCEEEEEEEEEEECCSSH
T ss_pred cccCceeEEEeccCcccccCccceeeeccHHHceecceEEEe---eeEEEEEeeeccccCCCCcceEEEEEEEeccccee
Confidence 478899999865431 2577899999999999 7777776655555554 699999999999999999
Q ss_pred EEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhC
Q psy8686 70 FFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESM 149 (176)
Q Consensus 70 ~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~l 149 (176)
.+++++||++++++++++||+|+++|||+++ |+|+||++++|+..+++.+
T Consensus 250 ii~l~iP~~liv~Ls~lsF~Lp~d~~eRisL------------------------------gIT~LLt~tvfl~~v~~~L 299 (522)
T 4aq5_C 250 VINFITPCVLISFLAALAFYLPAESGEKMST------------------------------AICVLLAQAVFLLLTSQRL 299 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHTTHHHHHTTCHHH------------------------------HHHHHHHHHHHHHHHHHHH
T ss_pred eeehhhHHHHHHHHHHheeecCCCcCceEEe------------------------------hHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999 9999999999999999999
Q ss_pred CCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 150 PTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 150 P~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|++|+.+|+||+|+.++|++++++++
T Consensus 300 P~tS~~vPlI~~y~~~~m~lv~lSll 325 (522)
T 4aq5_C 300 PETALAVPLIGKYLMFIMSLVTGVVV 325 (522)
T ss_dssp HHHTTTTTCCHHHHHHHHHHHHHHHH
T ss_pred CcccCCccHHHHHHHHHHHHHHHHHH
Confidence 99998899999999999999999876
No 8
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=99.94 E-value=5.8e-28 Score=207.31 Aligned_cols=137 Identities=18% Similarity=0.224 Sum_probs=123.4
Q ss_pred CccCceEEEEEcCCC-CcCcccceecccEEE-EEeeeeeeE------eeeeeeccCCCceeeEEEEEEEEeccceeEEEE
Q psy8686 2 LSLSNTLDLILKDEA-GGDLTTFITNGEWYL-LVCKQISSK------KNEVQYECCPETYVDITFTIQIRRRTLYYFFNL 73 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~-~idls~f~~n~eW~l-~~~~~~~~~------~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~l 73 (176)
.|+++++++...++. ..+.++ +++||++ . +...+ ++...|+||++.|+++++++.+|||++||.+++
T Consensus 134 ~y~~~~v~l~~~~~~~~~~~~~--~~~ew~l~~---~~~~~~~~~~y~~~~~~~~~~~~y~~l~~~~~l~R~~~~y~~~~ 208 (322)
T 3rqw_A 134 SYNNQQLRFSDIQVYTENIDNE--EIDEWWIRG---KASTHISDIRYDHLSSVQPNQNEFSRITVRIDAVRNPSYYLWSF 208 (322)
T ss_dssp SCSSEEEEEEEEECCSCSSSSC--SSSSEEECC---SCEECCEEEECTTSCCSSSSCCEEEEEEEEEEEEECCHHHHHHT
T ss_pred ccCcceEEEEECCCcccccCCC--CCCceEEEe---eeEEEeeccccceeeeccCCCCCeEEEEEEEEEEEeeeeeeehH
Confidence 588999999875432 134444 7899999 8 77776 666678999999999999999999999999999
Q ss_pred ehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCC
Q psy8686 74 IVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTS 153 (176)
Q Consensus 74 ivP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS 153 (176)
++||++++++++++||+| ++|||+++ |+|++|++++|+..+++.+|++|
T Consensus 209 ~iP~~li~~ls~~sF~lp-~~~~Rv~l------------------------------~it~lL~~~~~~~~~~~~lP~~s 257 (322)
T 3rqw_A 209 ILPLGLIIAASWSVFWLE-SFSERLQT------------------------------SFTLMLTVVAYAFYTSNILPRLP 257 (322)
T ss_dssp HHHHHHHHHHHHGGGGCS-SHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHSCCCS
T ss_pred HHHHHHHHHHHHHHhccC-CCCCcEEE------------------------------EEehHHHHHHHHHHHhhhCCCcc
Confidence 999999999999999999 88999999 99999999999999999999999
Q ss_pred CCccchHHHHHHHHHHHHHHHh
Q psy8686 154 DAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 154 ~~iPlIg~~~~~~~~~v~~~ll 175 (176)
+ +|+||.|+..+|++++++++
T Consensus 258 ~-vp~i~~~~~~~~~~v~~sll 278 (322)
T 3rqw_A 258 Y-TTVIDQMIIAGYGSIFAAIL 278 (322)
T ss_dssp S-CCHHHHHHHHHHHHHHHHHH
T ss_pred c-hHHHHHHHHHHHHHHHHHHH
Confidence 5 99999999999999999876
No 9
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=99.94 E-value=6.5e-29 Score=226.19 Aligned_cols=141 Identities=35% Similarity=0.588 Sum_probs=126.8
Q ss_pred CccCceEEEEEcCCC-------CcCcccceecccEEEEEeeeeeeEeeeeeeccCCC-ceeeEEEEEEEEeccceeEEEE
Q psy8686 2 LSLSNTLDLILKDEA-------GGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRRRTLYYFFNL 73 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~-------~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~-~y~~i~~~i~lrR~~~~y~~~l 73 (176)
.|+++++++...+++ .+|+++|.+||||++. +...+++...+.||++ .|++++|++.+|||++||.+++
T Consensus 149 ~y~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~eW~l~---~~~~~~~~~~~~~~~~~~y~~l~~~~~lrR~~~~Y~i~l 225 (488)
T 4aq5_E 149 TYNAHEVNLQLSAEEGEVVEWIHIDPEDFTENGEWTIR---HRPAKKNYNWQLTKDDIDFQEIIFFLIIQRKPLFYIINI 225 (488)
T ss_dssp SSCSSSCCEECCCSCC-------CGGGSCCTTCSEEEE---ECCCEEECCCCTTCCCSCCCEEEECCEEEECCCSSHHHH
T ss_pred ccccceEEEEeccCCCcceeeeeccHHHccccceEEEE---eeEEEEEEeeeccCCCCCcceEEEEEEEccchhheehhH
Confidence 478999999876432 2577889999999999 7777776655555554 6999999999999999999999
Q ss_pred ehhhHHHHHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCC
Q psy8686 74 IVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTT 152 (176)
Q Consensus 74 ivP~~li~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~t 152 (176)
++||++++++++++||+|++ +|||+++ |+|+||++++|+..+++.+|++
T Consensus 226 ~iP~~liv~Ls~lsF~Lp~~a~~eRvsL------------------------------gIt~LLt~tvfl~~v~~~LP~t 275 (488)
T 4aq5_E 226 IAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFLIAQKVPET 275 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCSTHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCCccccCceEEE------------------------------ehHHHHHHHHHHHHHHhhCCcc
Confidence 99999999999999999999 7999999 9999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHh
Q psy8686 153 SDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 153 S~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|+.+|+||+|+.++|+++++|++
T Consensus 276 S~~vPlI~~y~~~~m~lv~~Sll 298 (488)
T 4aq5_E 276 SLNVPLIGKYLIFVMFVSLVIVT 298 (488)
T ss_dssp HHHSCCCHHHHHHHHHHHHHHHH
T ss_pred ccCccHHHHHHHHHHHHHHHHHH
Confidence 98899999999999999999886
No 10
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=99.94 E-value=1.9e-28 Score=223.31 Aligned_cols=138 Identities=37% Similarity=0.609 Sum_probs=126.7
Q ss_pred CccCceEEEEEcC---------CCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEE
Q psy8686 2 LSLSNTLDLILKD---------EAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFN 72 (176)
Q Consensus 2 ~~~~~~Vdl~~~~---------~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~ 72 (176)
.|+++++++...+ +..+|+++|..||||++. +...+++...|+| .|+++++++.+|||++||.++
T Consensus 174 ~y~~~~v~l~~~~~~~~~~~~~~~~~~l~~f~~~~eW~l~---~~~~~~~~~~~~~---~y~~l~~~~~lrR~~~~Y~i~ 247 (493)
T 4aq5_B 174 TYDTSEVILQHALDAKGEREVKEIMINQDAFTENGQWSIE---HKPSRKNWRSDDP---SYEDVTFYLIIQRKPLFYIVY 247 (493)
T ss_dssp SCCBTSCEEECCCCC---------CCSGGGCCTTCSSBCC---CCCCEECCCTTSS---SBCCEEEECCCBCCCCSSTTT
T ss_pred cCccccEEEEeccCCCCccceecccccHHHhccccceeee---eeeEEEEeecCCC---CccEEEEEEEEEeccceeeeh
Confidence 4889999998742 234788899999999999 8888887776775 799999999999999999999
Q ss_pred EehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCC
Q psy8686 73 LIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTT 152 (176)
Q Consensus 73 livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~t 152 (176)
+++||++++++++++||+|+++|||+++ |+|+||++++|+..+++.+|++
T Consensus 248 l~iP~~liv~Ls~lsF~Lp~~s~eRvsL------------------------------giT~LLt~tvfl~~v~~~LP~t 297 (493)
T 4aq5_B 248 TIVPCILISILAILVFYLPPDAGEKMSL------------------------------SISALLALTVFLLLLADKVPET 297 (493)
T ss_dssp THHHHHHHHHHHHHHHHSTTTCGGGGTH------------------------------HHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhHHHHHHHHHhEEecCCCCCceEEe------------------------------hHHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999 9999999999999999999999
Q ss_pred CCCccchHHHHHHHHHHHHHHHh
Q psy8686 153 SDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 153 S~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|+.+|+||.|+.++|++++++++
T Consensus 298 S~~vPlI~~y~~~~m~~v~lsll 320 (493)
T 4aq5_B 298 SLSVPIIISYLMFIMILVAFSVI 320 (493)
T ss_dssp TTSSCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHhHHHHHHHHHHHHHH
Confidence 98899999999999999999876
No 11
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=99.94 E-value=2.5e-28 Score=195.95 Aligned_cols=101 Identities=40% Similarity=0.709 Sum_probs=81.7
Q ss_pred eeccCCCceeeEEEEEEEEeccceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCC
Q psy8686 45 QYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124 (176)
Q Consensus 45 ~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~ 124 (176)
...||+|+|++++|++.+|||++||.+|+++||+++++++|++||+|+|+|||+++
T Consensus 7 ~~~~~~~~y~~i~~~~~lrR~~~~Y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvsl------------------------ 62 (164)
T 2ksr_A 7 HSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMTL------------------------ 62 (164)
T ss_dssp ------------------CCCTHHHHHHTHHHHHHHHHHHHHHHTSCCCSHHHHHH------------------------
T ss_pred CCCCCCCCcceEEEEEEEEEeehheeeeehhhHHHHHHHHhheeEcCCCCCCeEEE------------------------
Confidence 45789999999999999999999999999999999999999999999999999999
Q ss_pred CccccccchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 125 ~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|+|++|++++|+..+++++|++|+++|+||+|+..+|+++++|++
T Consensus 63 ------git~LLs~tvfl~~v~~~lP~tS~~vPlI~~y~~~~m~~v~~sll 107 (164)
T 2ksr_A 63 ------CISVLLALTVFLLLISKIVPPTSLDVPLVGKYLMFTMVLVTFSIV 107 (164)
T ss_dssp ------HHHHHHHHHHHHHHHHTTCCSSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ------eeehHHHHHHHHHHHHHHCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999886
No 12
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR {Torpedo marmorata} PDB: 2lkh_A
Probab=99.93 E-value=4.6e-30 Score=201.33 Aligned_cols=108 Identities=31% Similarity=0.381 Sum_probs=101.8
Q ss_pred eeEeeeeeeccCCCce--------eeEEEEEEEEeccceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeec
Q psy8686 38 SSKKNEVQYECCPETY--------VDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTS 109 (176)
Q Consensus 38 ~~~~~~~~~~~~~~~y--------~~i~~~i~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~ 109 (176)
...++.+.|+||+++| +++++++.+|||++||.+++++||+++++++|++||+|+|+|||+++
T Consensus 13 ~~~~~~~~y~cC~~~y~~~~~g~y~~l~~~f~lrR~~~~y~~~liiP~~li~~Ls~~~F~Lp~dsgeRvsl--------- 83 (140)
T 2lkg_A 13 DHILKCVFDKICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKMTE--------- 83 (140)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSCTHHHHHHHHHHHHHHHTHHHHSSSSCCSSSHHHHH---------
T ss_pred ccEEEEEEecCCCCCccccCCCcEEEEEEEEEEEEcceeeeehhhhHHHHHHHHHhheeEcCCCCCCEEEE---------
Confidence 3455667799999977 79999999999999999999999999999999999999999999999
Q ss_pred eeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 110 AFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|+|++|++++|+..+++++|++|+++|+||+|+..+|+++++|++
T Consensus 84 ---------------------git~lLs~tvfl~~v~~~lP~tS~~vPlI~~y~~~~~~~v~~sll 128 (140)
T 2lkg_A 84 ---------------------SKSVLKSLTEKLKKIVELIPSTSSAVPLIGKYMLFTKEFVESSIK 128 (140)
T ss_dssp ---------------------HHHHHHHHHHHHHGGGGTCTTTGGGHHHHHHHHHHHHHHTTHHHH
T ss_pred ---------------------eeehHHHHHHHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998999999999999999998875
No 13
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=99.93 E-value=2.1e-26 Score=199.68 Aligned_cols=138 Identities=20% Similarity=0.299 Sum_probs=120.5
Q ss_pred CccCceEEEEEcCCCCcCccc--ceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEehhhHH
Q psy8686 2 LSLSNTLDLILKDEAGGDLTT--FITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVL 79 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~--f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~livP~~l 79 (176)
.|+++++++...+++.++.++ ..+.+||++. +....+....++ .+.|+++++++.+|||++||.+++++||++
T Consensus 152 ~y~~~~v~l~~~~~~~~~~~~~~~~~~~e~~l~---~~~~~~~~~~~~--~~~y~~l~~~~~l~R~~~~y~~~l~iP~~l 226 (347)
T 3rhw_A 152 AYTTKDIEYLWKEHSPLQLKVGLSSSLPSFQLT---NTSTTYCTSVTN--TGIYSCLRTTIQLKREFSFYLLQLYIPSCM 226 (347)
T ss_dssp SCCTTTEEEEECSSCSEEECTTSGGGCCSEEEE---EEEEEECCEECS--SCEECEEEEEEEEEECSHHHHHHTHHHHHH
T ss_pred cCChhhEEEEecCCCceeecCcceeEccceEEe---eEEeeEeeeeec--ccceeEEEEEEEEEEEeeEEEEEeehhHHH
Confidence 588999999876544444444 5677999999 666554443333 568999999999999999999999999999
Q ss_pred HHHHhhheeecCCCC-CceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHhhhhCCCCCCCccc
Q psy8686 80 ISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPL 158 (176)
Q Consensus 80 i~~l~l~~f~lp~~s-ger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v~~~lP~tS~~iPl 158 (176)
++++++++||+|+++ |||+++ |+|+||++++|+..+++.+|++|+ +|+
T Consensus 227 i~~ls~~sF~lp~~~~~~Rv~l------------------------------git~lLt~tv~~~~~~~~lP~~S~-v~~ 275 (347)
T 3rhw_A 227 LVIVSWVSFWFDRTAIPARVTL------------------------------GVTTLLTMTAQSAGINSQLPPVSY-IKA 275 (347)
T ss_dssp HHHHHHTTTTSCTTCHHHHHHH------------------------------HHHHHHHHHHHHHHHHHTSCCCSS-CCH
T ss_pred HHHHhheEEeccCCCCcceEEE------------------------------EeehHHHHHHHHHHHHhhCCCccc-eeH
Confidence 999999999999999 899999 999999999999999999999995 999
Q ss_pred hHHHHHHHHHHHHHHHh
Q psy8686 159 IGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 159 Ig~~~~~~~~~v~~~ll 175 (176)
||.|+..||++++++++
T Consensus 276 id~~~~~~~~~v~~sll 292 (347)
T 3rhw_A 276 IDVWIGACMTFIFCALL 292 (347)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999999886
No 14
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=99.87 E-value=1.2e-23 Score=163.92 Aligned_cols=85 Identities=41% Similarity=0.738 Sum_probs=81.4
Q ss_pred EEEeccceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHH
Q psy8686 61 QIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTV 140 (176)
Q Consensus 61 ~lrR~~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~ 140 (176)
++|||++||.+|+++||++++++++++||+|+|+|||+++ |+|++|++++
T Consensus 2 ~lrR~~~~y~~~~iiP~~li~~Ls~~~F~lp~~s~eRv~l------------------------------git~lLs~tv 51 (137)
T 2lly_A 2 NAEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITL------------------------------CISVLLSLTV 51 (137)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHH------------------------------HHHHHHHHHH
T ss_pred ceEeeehhhhHHHHHHHHHHHHHHHHheeeCCCCCCeEEE------------------------------EeeeHHHHHH
Confidence 5799999999999999999999999999999999999999 9999999999
Q ss_pred HHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 141 FLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 141 ~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|+..+++++|++|+++|+||+|+..+|++++.+++
T Consensus 52 ~l~~~~~~lP~tS~~vpli~~y~~~~~~~v~~sl~ 86 (137)
T 2lly_A 52 FLLLITEIIPSTSSVSPSIGEYLLFTMIFVTLSIV 86 (137)
T ss_dssp HHHHHHHHCSCCSSSCCSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccchHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999875
No 15
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=99.76 E-value=8.8e-21 Score=161.45 Aligned_cols=80 Identities=43% Similarity=0.759 Sum_probs=77.8
Q ss_pred cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686 66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV 145 (176)
Q Consensus 66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v 145 (176)
|+||.+|+++||++++++++++||+|+|+|||+++ |+|++|++++|+.++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~gekv~l------------------------------~it~lLs~tvfl~~~ 50 (260)
T 1oed_C 1 PLFYVINFITPCVLISFLASLAFYLPAESGEKMST------------------------------AISVLLAQAVFLLLT 50 (260)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCeEee------------------------------hHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999 999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
++.+|+||+++|+||+|+..+|+++++|++
T Consensus 51 ~~~lP~tS~~vPli~~y~~~~m~~v~~s~~ 80 (260)
T 1oed_C 51 SQRLPETALAVPLIGKYLMFIMSLVTGVIV 80 (260)
T ss_dssp HHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred HHHCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999875
No 16
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=99.75 E-value=9.4e-21 Score=158.50 Aligned_cols=80 Identities=46% Similarity=0.808 Sum_probs=77.8
Q ss_pred cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686 66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV 145 (176)
Q Consensus 66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v 145 (176)
|+||.+|+++||++++++++++||+|+|+|||+++ |+|++|++++|+.++
T Consensus 1 pl~Y~~nliiP~~li~~Ls~~~F~Lp~~sgerv~l------------------------------~it~lLs~tvfl~~v 50 (227)
T 1oed_A 1 PLYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL------------------------------SISVLLSLTVFLLVI 50 (227)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred CeEEEehHHHHHHHHHHHHHHHheeCCCCCCeEee------------------------------hHHHHHHHHHHHHHH
Confidence 67999999999999999999999999999999999 999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
++.+|++|+++|+||+|+..+|+++++|++
T Consensus 51 ~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (227)
T 1oed_A 51 VELIPSTSSAVPLIGKYMLFTMIFVISSII 80 (227)
T ss_dssp HHHHHHHHHHSCCCTHHHHHHHHHHHHHHH
T ss_pred HHhCCCcccccchHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999875
No 17
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=99.74 E-value=1.3e-20 Score=159.61 Aligned_cols=80 Identities=43% Similarity=0.806 Sum_probs=77.7
Q ss_pred cceeEEEEehhhHHHHHHhhheeecCCCCCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHHh
Q psy8686 66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLV 145 (176)
Q Consensus 66 ~~~y~~~livP~~li~~l~l~~f~lp~~sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~v 145 (176)
|+||.+|+++||++++++++++||+|+|+|||+++ |+|++|++++|+.++
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~dsgerv~l------------------------------~it~lLs~tvfl~~v 50 (250)
T 1oed_B 1 PLFYIVYTIIPCILISILAILVFYLPPDAGEKMSL------------------------------SISALLAVTVFLLLL 50 (250)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH------------------------------HHHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHheeCCCCCCeEEe------------------------------hhhHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999 999999999999999
Q ss_pred hhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 146 AESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 146 ~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
++.+|+||+++|+||+|+..+|+++++|++
T Consensus 51 ~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 80 (250)
T 1oed_B 51 ADKVPETSLSVPIIIRYLMFIMILVAFSVI 80 (250)
T ss_dssp HHHHHHHHHHSCCCCTTHHHHHHHHHHHHH
T ss_pred HHHCCCCcccCCcHHHHHHHHHHHHHHHHH
Confidence 999999998999999999999999999875
No 18
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=99.73 E-value=3.6e-20 Score=157.71 Aligned_cols=80 Identities=41% Similarity=0.787 Sum_probs=77.6
Q ss_pred cceeEEEEehhhHHHHHHhhheeecCCC-CCceEEEeeecceeeceeecccccccccCCCCccccccchhhhHHHHHHHH
Q psy8686 66 TLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNL 144 (176)
Q Consensus 66 ~~~y~~~livP~~li~~l~l~~f~lp~~-sger~~l~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~vt~LLs~~~~l~~ 144 (176)
|+||.+|+++||++++++++++||+|+| +|||+++ |+|++|++++|+.+
T Consensus 1 pl~Y~~nliiP~~li~~ls~~~F~Lp~~~~gerv~l------------------------------~it~lLs~tvfl~~ 50 (260)
T 1oed_E 1 PLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------------SISVLLAQTIFLFL 50 (260)
T ss_dssp CCSHHHHHHTHHHHHHHHHHHHHHHHHTCCTTHHHH------------------------------HHHHHHHHHHHHHH
T ss_pred CeEEEEhHHHHHHHHHHHHHHHeeeCCCCCCCeEEe------------------------------ehhHHHHHHHHHHH
Confidence 5799999999999999999999999999 8999999 99999999999999
Q ss_pred hhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 145 VAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 145 v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
+++.+|++|+++|+||+|+..+|+++++|++
T Consensus 51 ~~~~lP~tS~~vPli~~y~~~~m~~v~~sl~ 81 (260)
T 1oed_E 51 IAQKVPETSLNVPLIGKYLIFVMFVSMLIVM 81 (260)
T ss_dssp HHHHHHHHHHHSCCCCSHHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccchhHHHHHHHHHHHHHHHHH
Confidence 9999999998999999999999999999875
No 19
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A* 2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A* 2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A* 2xnt_A* 2xnu_A* ...
Probab=99.29 E-value=5.6e-12 Score=104.01 Aligned_cols=70 Identities=21% Similarity=0.474 Sum_probs=55.8
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEEEeh
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIV 75 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~liv 75 (176)
.|+++++++...++ ++++++|.+|+||++. +...++++..|+||+++|++++|++.+|||++||.+++++
T Consensus 157 ~y~~~~i~l~~~~~-~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~fYii~lil 226 (228)
T 2wn9_A 157 VYSGFEIDLKTDTD-QVDLSSYYASSKYEIL---SATQTRQVQHYSCCPEPYIDVNLVVKFRERRAGNGFFRNL 226 (228)
T ss_dssp SCCTTTEEEECSCS-BCBCTTCCTTCSEEEE---EEEEEEEEECCSSCSSCEEEEEEEEEEEECC---------
T ss_pred cccccEEEEEecCC-ccchhhceecCCEEEE---EEEEEEEEEeecCCCCCeeEEEEEEEEEEeccceEEEEEE
Confidence 58899999997653 5888999999999999 8888888888999999999999999999999999998764
No 20
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine, glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP: b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A* 3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Probab=99.19 E-value=4.6e-11 Score=97.08 Aligned_cols=66 Identities=24% Similarity=0.539 Sum_probs=57.9
Q ss_pred CccCceEEEEEcCCCCcCccccee-cccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEE
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFIT-NGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFF 71 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~-n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~ 71 (176)
.|+++++++...++ .+++++|.+ ++||++. +...+++...|+||+++|++++|++.+|||++||++
T Consensus 145 ~y~~~~i~l~~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~~~yyil 211 (211)
T 1uw6_A 145 THHSREISVDPTTE-NSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRKKGRSEIL 211 (211)
T ss_dssp SCCTTTEEEEECCC-SSCTTTTSCTTSSEEEE---EEEEEEEEEECTTCSSEEEEEEEEEEEEECCCC---
T ss_pred cccCceEEEEeccc-ccchhhhcccCCCEEEE---eeEEEEEEEEeCCCCCCcceEEEEEEEEEccceeEC
Confidence 58899999998653 688899999 9999999 888888888999999999999999999999999973
No 21
>4aoe_A Acetylcholine-binding protein type 2; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholin receptor; 5.80A {Biomphalaria glabrata}
Probab=99.18 E-value=2.5e-11 Score=99.36 Aligned_cols=58 Identities=26% Similarity=0.472 Sum_probs=53.2
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEe
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR 64 (176)
.|+++++++... +++|+++|.+||||+++ +.++++++..|+|||++|++++|++.+||
T Consensus 147 ~y~~~~l~l~~~--~~~dl~~~~~n~EW~l~---~~~~~r~~~~Y~CC~~~y~dit~~i~lrR 204 (205)
T 4aoe_A 147 TYDVRDLVLDES--QQVDLTTYAGGERFQLI---EAKQKVNKKTYPCCPQSFEDIELRVTFKK 204 (205)
T ss_dssp SCCTTTEEEECS--SSCBCTTSCTTCSEEEE---EEEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred cCChheEEEecC--cccchhccccCCcEEEE---eeEEEEEEEEeCCCCCCcceEEEEEEEEE
Confidence 588999998743 46899999999999999 99999999999999999999999999999
No 22
>4aod_A Acetylcholine-binding protein type 1; ligand gated ION channel, LGI Cys-loop receptor, ACHBP, ACHR, acetylcholine receptor; 6.00A {Biomphalaria glabrata}
Probab=99.15 E-value=3.1e-11 Score=98.69 Aligned_cols=58 Identities=31% Similarity=0.590 Sum_probs=53.4
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEe
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR 64 (176)
.|+++++++.... ++|+++|.+||||++. +.++++++..|+||+++|++++|++.+||
T Consensus 147 ~y~~~~i~l~~~~--~~dl~~~~~n~EW~l~---~~~~~~~~~~Y~cc~~~Y~~it~~~~lrR 204 (205)
T 4aod_A 147 THSTQELTLEVNA--KVDLGDYASDTRFQLL---NATQQVNRKQYPCCPETYEDTTLSFTFRK 204 (205)
T ss_dssp SCCTTTEEEECSS--SCBCTTSCTTCSSEEE---EEEEEEEEEEETTEEEEEEEEEEEEEEEC
T ss_pred cccccEEEEEECC--CcccccccccCCEEEE---eeEEEEEEEEeCCCCCCcceEEEEEEEEC
Confidence 5899999998743 5899999999999999 99999999999999999999999999976
No 23
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta} PDB: 4afg_A* 4b5d_A*
Probab=99.15 E-value=4.4e-11 Score=99.31 Aligned_cols=66 Identities=23% Similarity=0.481 Sum_probs=53.7
Q ss_pred CccCceEEEEEcCC-CCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeEEE
Q psy8686 2 LSLSNTLDLILKDE-AGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFN 72 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~-~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~~~ 72 (176)
.|+++++++...++ +++|+ +|.+|| |+++ ++..++++..|+||+++|++++|++.+||||+||+.+
T Consensus 154 ~y~~~~v~l~~~~~~~~~d~-~~~~n~-W~l~---~~~~~~~~~~y~cc~~~y~~i~f~~~irRrpl~~~~~ 220 (230)
T 4afh_A 154 VYSVDEVDIHFMDDKAEVLL-DFYQDS-LEIL---ENSAQRQEVVYPCCESAYVEMKYLLALRSENGNSTYS 220 (230)
T ss_dssp SCCTTTEEEEEGGGCCSCBC-TTCCCC-CCEE---EEEEEEEEECCTTCSSCEEEEEEEEEEECC-------
T ss_pred cccCceEEEEECCCCcccce-eeecCc-EEEE---EEEEEEEEEecCCCCCCccEEEEEEEEEEeechhhcc
Confidence 58999999998653 35888 999999 9999 9999999989999999999999999999999999875
No 24
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport protein; 2.30A {Gloeobacter violaceus}
Probab=99.09 E-value=1.3e-10 Score=94.54 Aligned_cols=65 Identities=6% Similarity=0.018 Sum_probs=47.7
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEeccceeE
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYF 70 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~~~y~ 70 (176)
.|+++++++...+ +.+++++|.+++||++. +...++++..|+||+++|++++|++.+|||.+.+.
T Consensus 134 ~y~~~~v~l~~~~-~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~cc~~~y~~i~f~i~irR~~~~~~ 198 (201)
T 3igq_A 134 SVDTRNIVLAVDL-EKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISRQGGHHH 198 (201)
T ss_dssp CCSSCCEEEEECG-GGCEESCSEEETTEEEE---EEEEEEEC--------CCCEEEEEEEEEEC-----
T ss_pred CCCceEEEEEecC-CccccccCcccCCeEEE---eeEEEEEEEEeCCCCCccCeEEEEEEEEECCCCCC
Confidence 5899999999865 45888999999999999 99999999999999999999999999999998754
No 25
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein, glycprotein, IGG fold, immunoglobulin domain, pentamer, signal; HET: CXS; 2.0A {Bulinus truncatus}
Probab=98.95 E-value=2.1e-09 Score=86.76 Aligned_cols=61 Identities=23% Similarity=0.478 Sum_probs=55.0
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEec
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRR 65 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~ 65 (176)
.|+++++++...++.++++++|.+++||++. +...++++..|+||+++|++++|++.+|||
T Consensus 143 ~y~~~~v~l~~~~~~~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~y~~l~~~~~l~R~ 203 (203)
T 2bj0_A 143 THDNKQFALITGEEGVVNIAEYFDSPKFDLL---SATQSLNRKKYSCCENMYDDIEITFAFRKK 203 (203)
T ss_dssp SCCTTTEEEEECTTTTSCTTTTCCCSSEEEE---EEEEEEEEEECTTCSSEEEEEEEEEEEEEC
T ss_pred cccCcEEEEEecCCCccchhcceecCCEEEE---EeEEEEEEEecCCCCCCeeEEEEEEEEEEC
Confidence 5899999999865433888999999999999 888989988999999999999999999997
No 26
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine receptor, glycosylated protein, beta sandwich, Cys-loop, buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus musculus} PDB: 1l4w_B 1ljz_B
Probab=98.95 E-value=2.2e-09 Score=87.16 Aligned_cols=61 Identities=28% Similarity=0.599 Sum_probs=55.5
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCC-CceeeEEEEEEEEecc
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCP-ETYVDITFTIQIRRRT 66 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~-~~y~~i~~~i~lrR~~ 66 (176)
.|+++++++...++ .+++++|.++|||++. +...+++...|+||+ ++|++++|++.+||||
T Consensus 151 ~y~~~~v~l~~~~~-~~~~~~~~~~~ew~l~---~~~~~~~~~~y~~~~~~~y~~i~~~~~l~R~p 212 (212)
T 2qc1_B 151 TYDGSAVAINPESD-QPDLSNFMESGEWVIK---EARGWKHWVFYSCCPTTPYLDITYHFVMQRLP 212 (212)
T ss_dssp SCCTTTEEEEESCS-SCBCTTCCCCSSEEEE---EEEEEEEEEEETTCSSCCEEEEEEEEEEEECC
T ss_pred cccCceEEEEeccc-ccchhhCccCCCEEEE---EeEEEEEEEecCCCCCCCeeEEEEEEEEEECc
Confidence 58899999998654 5889999999999999 888888888999999 8999999999999997
No 27
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7, acetylcholine-binding protein; nicotinic receptor; HET: EPJ NAG; 2.80A {Homo sapiens} SCOP: b.96.1.1 PDB: 3sq9_A*
Probab=98.95 E-value=1.6e-09 Score=87.85 Aligned_cols=59 Identities=34% Similarity=0.695 Sum_probs=53.3
Q ss_pred CccCceEEEEEcCCCCcCcccceecccEEEEEeeeeeeEeeeeeeccCCCceeeEEEEEEEEecc
Q psy8686 2 LSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRT 66 (176)
Q Consensus 2 ~~~~~~Vdl~~~~~~~idls~f~~n~eW~l~~~~~~~~~~~~~~~~~~~~~y~~i~~~i~lrR~~ 66 (176)
.|+++++++... .+++++|.+||||++. ++..+++...|+||+++|++++|++.+|||.
T Consensus 146 ~y~~~~v~l~~~---~~~~~~~~~~~eW~l~---~~~~~~~~~~y~~c~~~y~~i~~~~~lrRr~ 204 (204)
T 3sq6_A 146 THHSRELDLQMQ---EADISGYIPYSRFELV---GVTQKRSERFYECCKEPYPDVTFTVTFRKKG 204 (204)
T ss_dssp SCCTTTEEEECC---CCCCTTSCSSSSEEEE---EEEEEEEEEECSSSSSEEEEEEEEEEEEECC
T ss_pred cccCeEEEEEec---cCCHHHcccCCCEEEE---EeEEEEEEEeeCCCCCCcceEEEEEEEEECc
Confidence 588999999853 3788899999999999 9999999999999999999999999999984
No 28
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=97.71 E-value=3.2e-06 Score=59.90 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=42.2
Q ss_pred cchhhhHHHHHHHHhhhhCCCCCCCccchHHHHHHHHHHHHHHHh
Q psy8686 131 GVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175 (176)
Q Consensus 131 ~vt~LLs~~~~l~~v~~~lP~tS~~iPlIg~~~~~~~~~v~~~ll 175 (176)
|+|.+|+++.....+..++|+.| ++..|+.|+..|+++++.+|+
T Consensus 8 GittvLtmtt~~~~~~~~lPkVS-YikAiDvw~~~C~~FVF~aLl 51 (76)
T 1vry_A 8 GITTVLTLTTQSSGSRASLPKVS-YVKAIDIWLAVCLLFVFSALL 51 (76)
T ss_dssp HHHHHHHHHHHHHCTTTCCCSHH-HHHHHHHTHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhcCcccCCCCcc-chHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 699999999999999999986
No 29
>1mot_A Glycine receptor alpha-1 chain; second transmembrane domain, micelles, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=41.73 E-value=0.39 Score=26.94 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=16.4
Q ss_pred cchhhhHHHHHHHHhhhhCCC
Q psy8686 131 GVTILLSLTVFLNLVAESMPT 151 (176)
Q Consensus 131 ~vt~LLs~~~~l~~v~~~lP~ 151 (176)
|++.+|+++-....+..++|+
T Consensus 8 GittvLt~tt~~~~~~~~lPk 28 (28)
T 1mot_A 8 GITTVLTMTTQSSGSRASLPK 28 (28)
T ss_dssp HHHHHHHHCCSSSSSSSSCCC
T ss_pred cchhHHHHHHHHhhHhhhCCC
Confidence 999999888777766666664
Done!