RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8686
(176 letters)
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_A
Length = 461
Score = 146 bits (370), Expect = 1e-42
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 35/166 (21%)
Query: 6 NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRR 64
+ + + + DL+TF+ +GEW + K+ V Y CCP+ Y+DIT+ ++R
Sbjct: 178 TKVSISPESD-RPDLSTFMESGEWVMKDY---RGWKHWVYYTCCPDTPYLDITYHFIMQR 233
Query: 65 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
LY+ N+I+PC+L S + +L F LP DSGEK+TL
Sbjct: 234 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTL------------------------ 269
Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LLSLTVFL ++ E +P+TS AVPLIG + + +
Sbjct: 270 ------SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 309
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 142 bits (359), Expect = 1e-41
Identities = 51/165 (30%), Positives = 84/165 (50%), Gaps = 36/165 (21%)
Query: 6 NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRR 65
+ + L +A + F NG+W + S+KN + +Y D+TF + I+R+
Sbjct: 154 SEVILQHALDAMINQDAFTENGQWSIE---HKPSRKN---WRSDDPSYEDVTFYLIIQRK 207
Query: 66 TLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
L+Y IVPC+LIS +A+L F LPPD+GEK++L
Sbjct: 208 PLFYIVYTIVPCILISILAILVFYLPPDAGEKMSL------------------------- 242
Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
++ LL+LTVFL L+A+ +P TS +VP+I ++ I +++
Sbjct: 243 -----SISALLALTVFLLLLADKVPETSLSVPIIISYLMFIMILV 282
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 138 bits (350), Expect = 2e-40
Identities = 50/167 (29%), Positives = 78/167 (46%), Gaps = 35/167 (20%)
Query: 6 NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRR 64
+ ++L L E G D F NGEW + +KKN + + +I F + I+R
Sbjct: 153 HEVNLQLSAEEGIDPEDFTENGEWTIR---HRPAKKNYNWQLTKDDIDFQEIIFFLIIQR 209
Query: 65 RTLYYFFNLIVPCVLISSMALLGFTLPPD-SGEKLTLVYKGFLRTSAFFNNSVQCTRDFS 123
+ L+Y N+I PCVLISS+ +L + LP G+K TL
Sbjct: 210 KPLFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL----------------------- 246
Query: 124 GLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LL+ T+FL L+A+ +P TS VPLIG + + +
Sbjct: 247 -------SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVS 286
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 370
Score = 138 bits (350), Expect = 3e-40
Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 35/166 (21%)
Query: 6 NTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPE-TYVDITFTIQIRR 64
+ + + + DL+TF+ +GEW + K+ V Y CCP+ Y+DIT+ ++R
Sbjct: 154 TKVSISPESD-RPDLSTFMESGEWVMK---DYRGWKHWVYYTCCPDTPYLDITYHFIMQR 209
Query: 65 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
LY+ N+I+PC+L S + +L F LP DSGEK+TL
Sbjct: 210 IPLYFVVNVIIPCLLFSFLTVLVFYLPTDSGEKMTL------------------------ 245
Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LLSLTVFL ++ E +P+TS AVPLIG + + +
Sbjct: 246 ------SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 285
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, electron microscopy, ION transport,
postsynaptic membrane; 4.00A {Torpedo marmorata}
Length = 369
Score = 135 bits (341), Expect = 4e-39
Identities = 50/155 (32%), Positives = 72/155 (46%), Gaps = 34/155 (21%)
Query: 17 GGDLTTFITNGEWYLLVCKQISSKKNEVQYEC-CPETYVDITFTIQIRRRTLYYFFNLIV 75
D F NGEW ++ +KKN + Y D+TF + IRR+ L+Y N I
Sbjct: 163 IIDPEAFTENGEWEII---HKPAKKNIYGDKFPNGTNYQDVTFYLIIRRKPLFYVINFIT 219
Query: 76 PCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTIL 135
PCVLIS +A L F LP +SGEK++ + +L
Sbjct: 220 PCVLISFLAALAFYLPAESGEKMST------------------------------AICVL 249
Query: 136 LSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
L+ VFL L ++ +P T+ AVPLIG + I ++
Sbjct: 250 LAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 284
>4aq5_C Acetylcholine receptor delta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_C
Length = 522
Score = 132 bits (334), Expect = 3e-37
Identities = 50/171 (29%), Positives = 77/171 (45%), Gaps = 34/171 (19%)
Query: 1 MLSLSNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYEC-CPETYVDITFT 59
+++ + + D F NGEW ++ +KKN + Y D+TF
Sbjct: 183 LMTDTIDGKDYPIEWIIIDPEAFTENGEWEIIHK---PAKKNIYGDKFPNGTNYQDVTFY 239
Query: 60 IQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCT 119
+ IRR+ L+Y N I PCVLIS +A L F LP +SGEK++
Sbjct: 240 LIIRRKPLFYVINFITPCVLISFLAALAFYLPAESGEKMST------------------- 280
Query: 120 RDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+ +LL+ VFL L ++ +P T+ AVPLIG + I ++
Sbjct: 281 -----------AICVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 320
>4aq5_B Acetylcholine receptor beta subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_B
Length = 493
Score = 128 bits (323), Expect = 1e-35
Identities = 48/156 (30%), Positives = 78/156 (50%), Gaps = 36/156 (23%)
Query: 15 EAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLI 74
E + F NG+W + K + + +Y D+TF + I+R+ L+Y I
Sbjct: 196 EIMINQDAFTENGQWSIE------HKPSRKNWRSDDPSYEDVTFYLIIQRKPLFYIVYTI 249
Query: 75 VPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTI 134
VPC+LIS +A+L F LPPD+GEK++L ++
Sbjct: 250 VPCILISILAILVFYLPPDAGEKMSL------------------------------SISA 279
Query: 135 LLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
LL+LTVFL L+A+ +P TS +VP+I ++ I +++
Sbjct: 280 LLALTVFLLLLADKVPETSLSVPIIISYLMFIMILV 315
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein,
freeze-trapping, asymmetric gating, allost mechanism;
6.20A {Torpedo marmorata} PDB: 4aq9_E
Length = 488
Score = 128 bits (322), Expect = 1e-35
Identities = 46/164 (28%), Positives = 75/164 (45%), Gaps = 35/164 (21%)
Query: 9 DLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPET-YVDITFTIQIRRRTL 67
+ + + D F NGEW + +KKN + + +I F + I+R+ L
Sbjct: 163 EGEVVEWIHIDPEDFTENGEWTIRHR---PAKKNYNWQLTKDDIDFQEIIFFLIIQRKPL 219
Query: 68 YYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
+Y N+I PCVLISS+ +L + LP + G+K TL
Sbjct: 220 FYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL-------------------------- 253
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LL+ T+FL L+A+ +P TS VPLIG + + +
Sbjct: 254 ----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVS 293
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic
acetylcholine receptors, transmembrane domain, HFI
junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Length = 164
Score = 113 bits (284), Expect = 1e-32
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 30/131 (22%)
Query: 40 KKNEVQYECCPETYVDITFTIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLT 99
+ ++ F RR+ L+Y NLI+PCVLI+S+A+L F LP D GEK+T
Sbjct: 2 HHHHHHSTSVDLGTENLYFQSNARRKPLFYTINLIIPCVLITSLAILVFYLPSDCGEKMT 61
Query: 100 LVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLI 159
L +++LL+LTVFL L+++ +P TS VPL+
Sbjct: 62 L------------------------------CISVLLALTVFLLLISKIVPPTSLDVPLV 91
Query: 160 GTHHRLIFLII 170
G + +++
Sbjct: 92 GKYLMFTMVLV 102
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 114 bits (288), Expect = 2e-31
Identities = 22/156 (14%), Positives = 47/156 (30%), Gaps = 36/156 (23%)
Query: 6 NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
+T +++L D + W + ++ + + + ++I R
Sbjct: 140 DTRNIVLAVDLEKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISR 196
Query: 65 RTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSG 124
+ Y N+I+P + I ++ F +TL
Sbjct: 197 QYFSYIPNIILPMLFILFISWTAF-WSTSYEANVTL------------------------ 231
Query: 125 LPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160
V+ L++ F LV +P T + G
Sbjct: 232 ------VVSTLIAHIAFNILVETCLPKTPY-MTYTG 260
>2lkg_A Acetylcholine receptor; transmembrane domain, SIGN protein; NMR
{Torpedo marmorata} PDB: 2lkh_A
Length = 140
Score = 96.9 bits (241), Expect = 2e-26
Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 37/132 (28%)
Query: 46 YECCP-ETYVDITFTIQIRRRT------LYYFFNLIVPCVLISSMALLGFTLPPDSGEKL 98
C V+ I++ + LY+ N+I PC S + L F LP DSGEK+
Sbjct: 22 KICKIGTESVEAGRLIELSQEGGGGGGPLYFVVNVIEPCKKFSELTGLVFYLPTDSGEKM 81
Query: 99 TLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPL 158
T ++L SLT L + E +P+TS AVPL
Sbjct: 82 TE------------------------------SKSVLKSLTEKLKKIVELIPSTSSAVPL 111
Query: 159 IGTHHRLIFLII 170
IG + +
Sbjct: 112 IGKYMLFTKEFV 123
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane
domain, transport PROT; NMR {Homo sapiens}
Length = 137
Score = 93.3 bits (232), Expect = 4e-25
Identities = 35/109 (32%), Positives = 51/109 (46%), Gaps = 30/109 (27%)
Query: 62 IRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRD 121
L+Y NLI+PC+LIS + +L F LP + GEK+TL
Sbjct: 3 AEELPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITL--------------------- 41
Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LLSLTVFL L+ E +P+TS P IG + + +
Sbjct: 42 ---------CISVLLSLTVFLLLITEIIPSTSSVSPSIGEYLLFTMIFV 81
>2wn9_A Soluble acetylcholine receptor; 4-0H-DMXBA, acetylcholine binding
protein; HET: ZY5 NAG BMA MAN; 1.75A {Aplysia
californica} PDB: 2wnj_A* 2wzy_A* 2x00_A* 3peo_A*
2pgz_A* 2ph9_A* 4dbm_A* 3c84_A* 2byq_A* 2byr_A* 2bys_A*
2wnc_A* 2wnl_A* 3c79_A* 2byn_A* 3pmz_A* 2x00_D* 2xnv_A*
2xnt_A* 2xnu_A* ...
Length = 228
Score = 89.9 bits (223), Expect = 7e-23
Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 6/72 (8%)
Query: 5 SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
+DL + DL+++ + ++ +L + + Y CCPE Y+D+ ++ R
Sbjct: 160 GFEIDLKTDTD-QVDLSSYYASSKYEIL---SATQTRQVQHYSCCPEPYIDVNLVVKFRE 215
Query: 65 RTLYYFF--NLI 74
R F NL
Sbjct: 216 RRAGNGFFRNLF 227
>4afh_A ACHBP; acetylcholine-binding protein, nicotinic receptor, ION
chann; HET: NAG BMA MAN L0B; 1.88A {Capitella teleta}
PDB: 4afg_A*
Length = 230
Score = 88.4 bits (219), Expect = 2e-22
Identities = 13/75 (17%), Positives = 31/75 (41%), Gaps = 6/75 (8%)
Query: 5 SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
+ +D+ D+ ++ +L + S+++ EV Y CC YV++ + + +R
Sbjct: 157 VDEVDIHFMDD-KAEVLLDFYQDSLEIL---ENSAQRQEVVYPCCESAYVEMKYLLALRS 212
Query: 65 RTLYYFFN--LIVPC 77
++ L
Sbjct: 213 ENGNSTYSRDLAHHH 227
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 88.9 bits (221), Expect = 7e-22
Identities = 25/162 (15%), Positives = 51/162 (31%), Gaps = 41/162 (25%)
Query: 6 NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECC------PETYVDITF 58
N L + + EW++ + S+ ++++Y+ + IT
Sbjct: 136 NNQQLRFSDIQVYTENIDNEEIDEWWIR--GKASTHISDIRYDHLSSVQPNQNEFSRITV 193
Query: 59 TIQIRRRTLYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQC 118
I R YY ++ I+P LI + + F L S E+L
Sbjct: 194 RIDAVRNPSYYLWSFILPLGLIIAASWSVFWLESFS-ERLQT------------------ 234
Query: 119 TRDFSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIG 160
T++L++ + + +P +I
Sbjct: 235 ------------SFTLMLTVVAYAFYTSNILPRLPY-TTVID 263
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A
1eq8_A
Length = 260
Score = 88.0 bits (217), Expect = 8e-22
Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 30/104 (28%)
Query: 67 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
L+Y N I PCVLIS +A L F LP +SGEK++
Sbjct: 2 LFYVINFITPCVLISFLASLAFYLPAESGEKMST-------------------------- 35
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LL+ VFL L ++ +P T+ AVPLIG + I ++
Sbjct: 36 ----AISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 75
>1uw6_A Acetylcholine-binding protein; pentamer, IGG fold, nicotine,
glycoprotein; HET: NCT; 2.2A {Lymnaea stagnalis} SCOP:
b.96.1.1 PDB: 1i9b_A* 1ux2_A* 3u8l_A* 1yi5_A 1uv6_A*
3u8k_A* 3u8j_B* 3u8m_A* 3u8n_A* 2zju_A* 2zjv_A*
Length = 211
Score = 85.7 bits (212), Expect = 2e-21
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Query: 5 SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
S + + E D F + +L ++ KKN V Y CCPE Y D+ ++ R+
Sbjct: 148 SREISVDPTTENSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204
Query: 65 RTLYY 69
+
Sbjct: 205 KGRSE 209
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Length = 250
Score = 86.1 bits (212), Expect = 3e-21
Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 30/104 (28%)
Query: 67 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
L+Y I+PC+LIS +A+L F LPPD+GEK++L
Sbjct: 2 LFYIVYTIIPCILISILAILVFYLPPDAGEKMSL-------------------------- 35
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
++ LL++TVFL L+A+ +P TS +VP+I + I +++
Sbjct: 36 ----SISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILV 75
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A
2k59_B
Length = 227
Score = 84.5 bits (208), Expect = 8e-21
Identities = 37/104 (35%), Positives = 53/104 (50%), Gaps = 30/104 (28%)
Query: 67 LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
LY+ N+I+PC+L S + L F LP DSGEK+TL
Sbjct: 2 LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL-------------------------- 35
Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LLSLTVFL ++ E +P+TS AVPLIG + + +
Sbjct: 36 ----SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFV 75
>2bj0_A Acetylcholine-binding protein; 3D-structure, glycoprotein,
glycprotein, IGG fold, immunoglobulin domain, pentamer,
signal; HET: CXS; 2.0A {Bulinus truncatus}
Length = 203
Score = 81.4 bits (201), Expect = 8e-20
Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 5 SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
+ LI +E ++ + + ++ LL + N +Y CC Y DI T R+
Sbjct: 146 NKQFALITGEEGVVNIAEYFDSPKFDLL---SATQSLNRKKYSCCENMYDDIEITFAFRK 202
Query: 65 R 65
+
Sbjct: 203 K 203
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor,
ION channel, tubular crystal, transmembrane; 4.0A
{Torpedo marmorata} SCOP: f.36.1.1
Length = 260
Score = 79.6 bits (195), Expect = 9e-19
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 31/105 (29%)
Query: 67 LYYFFNLIVPCVLISSMALLGFTLPPDSG-EKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
L+Y N+I PCVLISS+ +L + LP +G +K TL
Sbjct: 2 LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------- 36
Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
+++LL+ T+FL L+A+ +P TS VPLIG + + +
Sbjct: 37 -----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVS 76
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane
protein, transport protein, Cys-loop receptor, LIGA ION
channel, neurotransmitter receptor; HET: NAG IVM LMT
UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A*
3rif_A*
Length = 347
Score = 77.9 bits (192), Expect = 9e-18
Identities = 26/172 (15%), Positives = 50/172 (29%), Gaps = 35/172 (20%)
Query: 6 NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
T D+ E + + ++ Y + TIQ++R
Sbjct: 154 TTKDIEYLWKEHSPLQLKVGLSSSLPSF--QLTNTSTTYCTSVTNTGIYSCLRTTIQLKR 211
Query: 65 RTLYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFS 123
+Y L +P ++ ++ + F + ++TL
Sbjct: 212 EFSFYLLQLYIPSCMLVIVSWVSFWFDRTAIPARVTL----------------------- 248
Query: 124 GLPLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175
GVT LL++T + +P S + I I+ LL
Sbjct: 249 -------GVTTLLTMTAQSAGINSQLPPVSY-IKAIDVWIGACMTFIFCALL 292
>2qc1_B Acetylcholine receptor subunit alpha; nicotinic acetylcholine
receptor, glycosylated protein, beta sandwich, Cys-loop,
buried hydrophilic residues; HET: NAG MAN; 1.94A {Mus
musculus} PDB: 1l4w_B 1ljz_B
Length = 212
Score = 72.5 bits (178), Expect = 2e-16
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 5 SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCP-ETYVDITFTIQIR 63
+ + + + + DL+ F+ +GEW + + K+ V Y CCP Y+DIT+ ++
Sbjct: 154 GSAVAINPESD-QPDLSNFMESGEWVIK---EARGWKHWVFYSCCPTTPYLDITYHFVMQ 209
Query: 64 RR 65
R
Sbjct: 210 RL 211
>3sq6_A ACHBP, neuronal acetylcholine receptor subunit alpha-7,
acetylcholine-binding protein; nicotinic receptor; HET:
EPJ NAG; 2.80A {Homo sapiens} PDB: 3sq9_A*
Length = 204
Score = 67.9 bits (166), Expect = 1e-14
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 6/61 (9%)
Query: 5 SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
S LDL +++ D++ +I + L+ + K++E YECC E Y D+TFT+ R+
Sbjct: 149 SRELDLQMQE---ADISGYIPYSRFELVGV---TQKRSERFYECCKEPYPDVTFTVTFRK 202
Query: 65 R 65
+
Sbjct: 203 K 203
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 61.6 bits (150), Expect = 2e-12
Identities = 6/67 (8%), Positives = 22/67 (32%), Gaps = 4/67 (5%)
Query: 6 NTLDLILK-DEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
+T +++L D + W + ++ + + + ++I R
Sbjct: 136 DTRNIVLAVDLEKVGKNDDVFLTGWDIE---SFTAVVKPANFALEDRLESKLDYQLRISR 192
Query: 65 RTLYYFF 71
+ ++
Sbjct: 193 QGGHHHH 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.2 bits (70), Expect = 0.19
Identities = 21/146 (14%), Positives = 37/146 (25%), Gaps = 76/146 (52%)
Query: 33 VCKQISSKKNEVQYECCPETYVDIT-FTIQIRRRTLYYFFNLIVPCVLISSMALL----- 86
+ K+I+ + + + T FT Q P + + A
Sbjct: 1706 IFKEINEHSTSYTFRS-EKGLLSATQFT-Q--------------PALTLMEKAAFEDLKS 1749
Query: 87 -GFTLPPDS-------GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLPLILSGVTILLSL 138
G +P D+ GE Y +A L S
Sbjct: 1750 KGL-IPADATFAGHSLGE-----Y------AA------------------------LAS- 1772
Query: 139 TVFLNLVAESMPTTSDAVPLIGTHHR 164
+A+ M V ++ +R
Sbjct: 1773 ------LADVMS-IESLVEVV--FYR 1789
Score = 27.3 bits (60), Expect = 3.3
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 25/78 (32%)
Query: 2 LSLSNTLDL-----------ILKDEAGGDLTTFI----------TNGEWYLLVCKQISSK 40
+S+ + +++ + +DE G I + E V +++ +
Sbjct: 1777 MSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 41 KNE----VQYECCPETYV 54
V Y + YV
Sbjct: 1837 TGWLVEIVNYNVENQQYV 1854
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.5 bits (68), Expect = 0.21
Identities = 7/32 (21%), Positives = 12/32 (37%), Gaps = 6/32 (18%)
Query: 12 LKDEAGGDLTTFITNGEWYLLVCKQISSKKNE 43
+++A DL EW +Q+ K
Sbjct: 112 WREKAKKDLE------EWNQRQSEQVEKNKIN 137
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 3.2
Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 4/22 (18%)
Query: 79 LISSMALLGFTLPPDSGEKLTL 100
L +S+ L DS L +
Sbjct: 25 LQASLKLYA----DDSAPALAI 42
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 26.1 bits (58), Expect = 7.2
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 5/36 (13%)
Query: 122 FSGLPLILSGVTILLSLTVFLNLVAESMPTTSDAVP 157
+PL L +TIL F+ L + P+ S A
Sbjct: 805 TVSVPLPLGCITIL-----FIELCTDIFPSVSLAYE 835
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.424
Gapped
Lambda K H
0.267 0.0513 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,622,825
Number of extensions: 142327
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 295
Number of HSP's successfully gapped: 39
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.1 bits)