RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8686
         (176 letters)



>d1oedc_ f.36.1.1 (C:) Acetylcholine receptor protein, delta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 84.1 bits (207), Expect = 9e-21
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y  N I PCVLIS +A L F LP +SGEK++                           
Sbjct: 2   LFYVINFITPCVLISFLASLAFYLPAESGEKMST-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                +++LL+  VFL L ++ +P T+ AVPLIG +   I  ++
Sbjct: 36  ----AISVLLAQAVFLLLTSQRLPETALAVPLIGKYLMFIMSLV 75


>d1oedb_ f.36.1.1 (B:) Acetylcholine receptor protein, beta chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 250

 Score = 81.7 bits (201), Expect = 5e-20
 Identities = 34/104 (32%), Positives = 55/104 (52%), Gaps = 30/104 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           L+Y    I+PC+LIS +A+L F LPPD+GEK++L                          
Sbjct: 2   LFYIVYTIIPCILISILAILVFYLPPDAGEKMSL-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLII 170
                ++ LL++TVFL L+A+ +P TS +VP+I  +   I +++
Sbjct: 36  ----SISALLAVTVFLLLLADKVPETSLSVPIIIRYLMFIMILV 75


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 78.3 bits (192), Expect = 1e-18
 Identities = 33/110 (30%), Positives = 54/110 (49%), Gaps = 31/110 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDS-GEKLTLVYKGFLRTSAFFNNSVQCTRDFSGL 125
           L+Y  N+I PCVLISS+ +L + LP  + G+K TL                         
Sbjct: 2   LFYIINIIAPCVLISSLVVLVYFLPAQAGGQKCTL------------------------- 36

Query: 126 PLILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIYYLLL 175
                 +++LL+ T+FL L+A+ +P TS  VPLIG +   +  +   +++
Sbjct: 37  -----SISVLLAQTIFLFLIAQKVPETSLNVPLIGKYLIFVMFVSMLIVM 81


>d1oeda_ f.36.1.1 (A:) Acetylcholine receptor protein, alpha chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 227

 Score = 74.8 bits (183), Expect = 2e-17
 Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 30/105 (28%)

Query: 67  LYYFFNLIVPCVLISSMALLGFTLPPDSGEKLTLVYKGFLRTSAFFNNSVQCTRDFSGLP 126
           LY+  N+I+PC+L S +  L F LP DSGEK+TL                          
Sbjct: 2   LYFVVNVIIPCLLFSFLTGLVFYLPTDSGEKMTL-------------------------- 35

Query: 127 LILSGVTILLSLTVFLNLVAESMPTTSDAVPLIGTHHRLIFLIIY 171
                +++LLSLTVFL ++ E +P+TS AVPLIG +     + + 
Sbjct: 36  ----SISVLLSLTVFLLVIVELIPSTSSAVPLIGKYMLFTMIFVI 76


>d1uw6a_ b.96.1.1 (A:) Acetylcholine binding protein (ACHBP) {Great
           pond snail (Lymnaea stagnalis) [TaxId: 6523]}
          Length = 208

 Score = 67.1 bits (163), Expect = 9e-15
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 5   SNTLDLILKDEAGGDLTTFITNGEWYLLVCKQISSKKNEVQYECCPETYVDITFTIQIRR 64
           S  + +    E   D   F     + +L    ++ KKN V Y CCPE Y D+  ++  R+
Sbjct: 148 SREISVDPTTENSDDSEYFSQYSRFEIL---DVTQKKNSVTYSCCPEAYEDVEVSLNFRK 204

Query: 65  R 65
           +
Sbjct: 205 K 205


>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 70

 Score = 24.6 bits (53), Expect = 2.7
 Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 1/29 (3%)

Query: 22 TFITNGEWYLLVCKQISS-KKNEVQYECC 49
            +   EW   +C  +   K+ +V  + C
Sbjct: 39 QDVPGEEWSCSLCHVLPDLKEEDVDLQAC 67


>d1vjua_ d.248.1.1 (A:) Hypothetical protein Lmaj006828 {Leishmania
           major [TaxId: 5664]}
          Length = 302

 Score = 25.8 bits (56), Expect = 3.5
 Identities = 15/90 (16%), Positives = 25/90 (27%), Gaps = 23/90 (25%)

Query: 1   MLSLSNTLDLILKDEAGGDLTTFI----------------TNGEWYLLVCKQISSKKNEV 44
                    +  ++EA G    F                   G+ Y+     I +++   
Sbjct: 166 KGWCDEYFFIPYRNEARGIGGLFFDDLNEWPFEKCFEFVQAVGKGYMDAYIPIVNRRKNT 225

Query: 45  QYECCPETYVDITFTIQIRRRTLYYFFNLI 74
            Y        +     Q  RR  Y  FNL+
Sbjct: 226 PYT-------EQQVEFQEFRRGRYAEFNLV 248


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.424 

Gapped
Lambda     K      H
   0.267   0.0536    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 627,290
Number of extensions: 26605
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 8
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.5 bits)