BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8689
(72 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|62751522|ref|NP_001015803.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus (Silurana) tropicalis]
gi|62858741|ref|NP_001016313.1| uncharacterized protein LOC549067 [Xenopus (Silurana) tropicalis]
gi|58477102|gb|AAH89759.1| polymerase (RNA) III (DNA directed) polypeptide K [Xenopus
(Silurana) tropicalis]
gi|89266864|emb|CAJ83854.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus (Silurana) tropicalis]
gi|213625552|gb|AAI70845.1| polr3k protein [Xenopus (Silurana) tropicalis]
Length = 108
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI+CG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|21956651|gb|AAM83406.1| POLR3K [Sphoeroides nephelus]
Length = 108
Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWRE
Sbjct: 105 RWRE 108
>gi|50540172|ref|NP_001002553.1| DNA-directed RNA polymerase III subunit RPC10 [Danio rerio]
gi|49903001|gb|AAH76249.1| Polymerase (RNA) III (DNA directed) polypeptide K [Danio rerio]
Length = 108
Score = 119 bits (299), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI+CG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|344292282|ref|XP_003417857.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Loxodonta africana]
Length = 108
Score = 119 bits (298), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN++CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAELCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNVQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|47220062|emb|CAG12210.1| unnamed protein product [Tetraodon nigroviridis]
Length = 108
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|225717070|gb|ACO14381.1| DNA-directed RNA polymerase III subunit RPC10 [Esox lucius]
Length = 108
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/64 (84%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTPEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNHECGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|432868046|ref|XP_004071384.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Oryzias latipes]
Length = 108
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGN 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|209732138|gb|ACI66938.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
Length = 93
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T EKCPKCEHPRA+FMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 30 KLKEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGH 89
Query: 69 RWRE 72
RWR+
Sbjct: 90 RWRD 93
>gi|348509155|ref|XP_003442117.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Oreochromis niloticus]
Length = 108
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTPETCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|238231633|ref|NP_001154002.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Oncorhynchus
mykiss]
gi|209736212|gb|ACI68975.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
gi|209737866|gb|ACI69802.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
gi|225703324|gb|ACO07508.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Oncorhynchus
mykiss]
Length = 108
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/64 (82%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T EKCPKCEHPRA+FMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADEPMTTFYKCCNYECGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|302058278|ref|NP_057394.2| DNA-directed RNA polymerase III subunit RPC10 [Homo sapiens]
gi|116242768|sp|Q9Y2Y1.2|RPC10_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III 12.5 kDa subunit; Short=RPC12.5;
AltName: Full=RNA polymerase III subunit C11;
Short=HsC11p; Short=RPC11; Short=hRPC11
gi|14336676|gb|AAK61210.1|AE006462_2 RNA polymerase III subunit CII [Homo sapiens]
gi|66350794|emb|CAI95605.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
Length = 108
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|345802468|ref|XP_854405.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Canis
lupus familiaris]
gi|410985427|ref|XP_003999024.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Felis
catus]
gi|4877775|gb|AAD31424.1|AF126531_1 putative DNA-directed RNA polymerase III C11 subunit [Homo sapiens]
gi|6580760|gb|AAF18268.1|AF051316_1 RNA polymerase III subunit [Homo sapiens]
gi|12001960|gb|AAG43123.1|AF060223_1 My010 protein [Homo sapiens]
gi|15080355|gb|AAH11932.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
gi|90653002|gb|ABD95903.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Homo
sapiens]
gi|119606285|gb|EAW85879.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Homo
sapiens]
gi|123999444|gb|ABM87280.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
gi|157929168|gb|ABW03869.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
gi|306921315|dbj|BAJ17737.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[synthetic construct]
Length = 108
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|363739487|ref|XP_001231486.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Gallus
gallus]
Length = 108
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 57/62 (91%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG RW
Sbjct: 47 KEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNAQCGHRW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|440913471|gb|ELR62921.1| DNA-directed RNA polymerase III subunit RPC10, partial [Bos
grunniens mutus]
Length = 71
Score = 118 bits (295), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 8 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 67
Query: 69 RWRE 72
RWR+
Sbjct: 68 RWRD 71
>gi|12862220|dbj|BAB32384.1| unnamed protein product [Mus musculus]
Length = 108
Score = 117 bits (294), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|354500619|ref|XP_003512396.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cricetulus griseus]
gi|344254447|gb|EGW10551.1| DNA-directed RNA polymerase III subunit RPC10 [Cricetulus griseus]
Length = 108
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|226822864|gb|ACO83096.1| DNA directed RNA polymerase III polypeptide K (predicted) [Dasypus
novemcinctus]
Length = 108
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|395835629|ref|XP_003790779.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Otolemur garnettii]
Length = 108
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|197128230|gb|ACH44728.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
gi|197128231|gb|ACH44729.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
Length = 108
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 57/62 (91%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN +CG RW
Sbjct: 47 KEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNPQCGHRW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|296473638|tpg|DAA15753.1| TPA: DNA-directed RNA polymerase III subunit RPC10 [Bos taurus]
Length = 108
Score = 117 bits (293), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|13385394|ref|NP_080177.1| DNA-directed RNA polymerase III subunit RPC10 [Mus musculus]
gi|62079253|ref|NP_001014281.1| DNA-directed RNA polymerase III subunit RPC10 [Rattus norvegicus]
gi|281183128|ref|NP_001162283.1| DNA-directed RNA polymerase III subunit RPC10 [Papio anubis]
gi|114660088|ref|XP_001150299.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pan
troglodytes]
gi|126335251|ref|XP_001364724.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Monodelphis domestica]
gi|296219167|ref|XP_002755763.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10
[Callithrix jacchus]
gi|311251657|ref|XP_003124725.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like [Sus
scrofa]
gi|332239931|ref|XP_003269145.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Nomascus
leucogenys]
gi|395515580|ref|XP_003761979.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10
[Sarcophilus harrisii]
gi|397476074|ref|XP_003809436.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pan
paniscus]
gi|426380499|ref|XP_004056900.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Gorilla gorilla gorilla]
gi|46397018|sp|Q9CQZ7.1|RPC10_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III subunit C11; Short=RPC11
gi|12836878|dbj|BAB23846.1| unnamed protein product [Mus musculus]
gi|12846620|dbj|BAB27239.1| unnamed protein product [Mus musculus]
gi|26327027|dbj|BAC27257.1| unnamed protein product [Mus musculus]
gi|58477408|gb|AAH89990.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Rattus
norvegicus]
gi|148675519|gb|EDL07466.1| polymerase (RNA) III (DNA directed) polypeptide K [Mus musculus]
gi|149033881|gb|EDL88664.1| rCG38533 [Rattus norvegicus]
gi|160904110|gb|ABX52097.1| polymerase III polypeptide K, 12.3 kDa (predicted) [Papio anubis]
gi|167427355|gb|ABZ80330.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Callithrix jacchus]
gi|169246090|gb|ACA51066.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Callicebus moloch]
gi|183396438|gb|ACC62113.1| DNA directed RNA polymerase III polypeptide K (predicted)
[Rhinolophus ferrumequinum]
gi|380788615|gb|AFE66183.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|383411311|gb|AFH28869.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|384943952|gb|AFI35581.1| DNA-directed RNA polymerase III subunit RPC10 [Macaca mulatta]
gi|410220334|gb|JAA07386.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410265268|gb|JAA20600.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410290868|gb|JAA24034.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|410350475|gb|JAA41841.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Pan
troglodytes]
gi|417395769|gb|JAA44927.1| Putative dna-directed rna polymerase iii subunit rpc10 [Desmodus
rotundus]
gi|431906774|gb|ELK10895.1| DNA-directed RNA polymerase III subunit RPC10 [Pteropus alecto]
Length = 108
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|74217136|dbj|BAC40210.2| unnamed protein product [Mus musculus]
Length = 107
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 44 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 103
Query: 69 RWRE 72
RWR+
Sbjct: 104 RWRD 107
>gi|190402235|gb|ACE77649.1| DNA-directed RNA polymerase III subunit RPC10 (predicted) [Sorex
araneus]
Length = 108
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKC+HPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCQHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|348585383|ref|XP_003478451.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cavia porcellus]
gi|351711232|gb|EHB14151.1| DNA-directed RNA polymerase III subunit RPC10 [Heterocephalus
glaber]
Length = 108
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|338713074|ref|XP_003362820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Equus caballus]
Length = 77
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ +CG
Sbjct: 14 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGH 73
Query: 69 RWRE 72
RWR+
Sbjct: 74 RWRD 77
>gi|148237221|ref|NP_001083658.1| polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa
[Xenopus laevis]
gi|38511445|gb|AAH61683.1| MGC68582 protein [Xenopus laevis]
Length = 108
Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 57/64 (89%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E CPKC HPRAYFMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTAETCPKCAHPRAYFMQIQTRSADEPMTTFYKCCNSQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|209731118|gb|ACI66428.1| DNA-directed RNA polymerase III subunit RPC10 [Salmo salar]
Length = 108
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T EKCPKCEHPRA+FMQIQTRSADE MTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTPEKCPKCEHPRAFFMQIQTRSADESMTTFYKCCNYECGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|301769553|ref|XP_002920195.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Ailuropoda melanoleuca]
gi|281341538|gb|EFB17122.1| hypothetical protein PANDA_008903 [Ailuropoda melanoleuca]
Length = 108
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|197129923|gb|ACH46421.1| putative DNA directed RNA polymerase III polypeptide K variant 1
[Taeniopygia guttata]
Length = 108
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ QTRSADEPMTTFYKCCN +CG RW
Sbjct: 47 KEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQTQTRSADEPMTTFYKCCNPQCGHRW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|426254133|ref|XP_004020739.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Ovis
aries]
Length = 108
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|355712780|gb|AES04463.1| polymerase III polypeptide K, 12.3 kDa [Mustela putorius furo]
Length = 113
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/63 (80%), Positives = 57/63 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ +CG
Sbjct: 51 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQCGH 110
Query: 69 RWR 71
RWR
Sbjct: 111 RWR 113
>gi|242011387|ref|XP_002426432.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212510537|gb|EEB13694.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 108
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 59/69 (85%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R + KE+D V+GG+AAWENVD+TEE+CPKC H RAYFMQIQTRSADEPMTTFYKCCN
Sbjct: 40 SRYYPRLKEVDDVLGGSAAWENVDSTEERCPKCSHSRAYFMQIQTRSADEPMTTFYKCCN 99
Query: 64 IKCGFRWRE 72
+CG RWR+
Sbjct: 100 PECGHRWRD 108
>gi|444727237|gb|ELW67738.1| DNA-directed RNA polymerase III subunit RPC10 [Tupaia chinensis]
Length = 108
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|318086250|ref|NP_001188119.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus punctatus]
gi|308322041|gb|ADO28158.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus furcatus]
gi|308322895|gb|ADO28585.1| DNA-directed RNA polymerase III subunit rpc10 [Ictalurus punctatus]
Length = 108
Score = 115 bits (287), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCC+ +CG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSPQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|284005380|ref|NP_001164882.1| DNA-directed RNA polymerase III subunit RPC10 [Oryctolagus
cuniculus]
gi|218157235|gb|ACK58460.1| DNA-directed RNA polymerase III subunit RPC10 (predicted)
[Oryctolagus cuniculus]
Length = 108
Score = 114 bits (286), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSPQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|291405015|ref|XP_002719011.1| PREDICTED: polymerase (RNA) III (DNA directed) polypeptide K-like
[Oryctolagus cuniculus]
Length = 152
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D+++GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSAD+PMTTFYKCC+ +CG
Sbjct: 89 KLKEVDNMLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADKPMTTFYKCCSPQCGH 148
Query: 69 RWRE 72
RWR+
Sbjct: 149 RWRD 152
>gi|442753419|gb|JAA68869.1| Putative rna polymerase iii [Ixodes ricinus]
Length = 108
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GGAAAWENVD+TEEKCPKC H RAYFMQIQTRSADEPMTTFYKCCN CG +W
Sbjct: 47 KDVDDVLGGAAAWENVDSTEEKCPKCSHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQW 106
Query: 71 RE 72
RE
Sbjct: 107 RE 108
>gi|410902675|ref|XP_003964819.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Takifugu rubripes]
Length = 108
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/64 (79%), Positives = 57/64 (89%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEH RA+FMQIQTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAETCPKCEHRRAFFMQIQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|346470135|gb|AEO34912.1| hypothetical protein [Amblyomma maculatum]
Length = 108
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 57/62 (91%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GGAAAWENVD+TEEKCPKC H RAYFMQIQTRSADEPMTTFYKCCN +CG +W
Sbjct: 47 KDVDDVLGGAAAWENVDSTEEKCPKCSHERAYFMQIQTRSADEPMTTFYKCCNPQCGHQW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|405977278|gb|EKC41737.1| DNA-directed RNA polymerase III subunit RPC10 [Crassostrea gigas]
Length = 108
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+TEE CPKC H RA+FMQIQTRSADEPMTTFYKCCN+ C
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTEETCPKCSHNRAFFMQIQTRSADEPMTTFYKCCNMACAH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|157118651|ref|XP_001659197.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Aedes aegypti]
gi|108883259|gb|EAT47484.1| AAEL001400-PA [Aedes aegypti]
Length = 108
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/68 (75%), Positives = 56/68 (82%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ K KE+DHVMGGAAAWENVD+T+ CP C H RAYFMQ+QTRSADEPMTTFYKCCN
Sbjct: 41 RIYPKLKEVDHVMGGAAAWENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCCNP 100
Query: 65 KCGFRWRE 72
CG WRE
Sbjct: 101 TCGHNWRE 108
>gi|241012140|ref|XP_002405456.1| RNA polymerase III [Ixodes scapularis]
gi|215491748|gb|EEC01389.1| RNA polymerase III [Ixodes scapularis]
Length = 109
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/62 (82%), Positives = 56/62 (90%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GGAAAWENVD+TEEKCPKC H RAYFMQIQTRSADEPMTTFYKCCN CG +W
Sbjct: 48 KDVDDVLGGAAAWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQW 107
Query: 71 RE 72
RE
Sbjct: 108 RE 109
>gi|260829971|ref|XP_002609935.1| hypothetical protein BRAFLDRAFT_114926 [Branchiostoma floridae]
gi|229295297|gb|EEN65945.1| hypothetical protein BRAFLDRAFT_114926 [Branchiostoma floridae]
Length = 108
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 57/64 (89%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG AW NVD+TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCC+ +CG
Sbjct: 45 KLKEVDDVLGGPEAWANVDSTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCSAECGH 104
Query: 69 RWRE 72
RW++
Sbjct: 105 RWKD 108
>gi|340372557|ref|XP_003384810.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Amphimedon queenslandica]
Length = 108
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 55/62 (88%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+D V+GGAAAWENVD T+EKCPKC HP+AYFMQIQTRSADEPMTTFYKCC+ C RW
Sbjct: 47 KEVDDVLGGAAAWENVDNTDEKCPKCSHPKAYFMQIQTRSADEPMTTFYKCCSPSCSHRW 106
Query: 71 RE 72
+E
Sbjct: 107 KE 108
>gi|156548560|ref|XP_001605743.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Nasonia vitripennis]
Length = 108
Score = 112 bits (281), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/69 (73%), Positives = 58/69 (84%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K KE+D V+GG+AAWENVD+TEE+CPKC + RAYFMQIQTRSADEPMTTFYKCCN
Sbjct: 40 SRTYPKLKEVDDVLGGSAAWENVDSTEERCPKCSNMRAYFMQIQTRSADEPMTTFYKCCN 99
Query: 64 IKCGFRWRE 72
+CG WRE
Sbjct: 100 PQCGHNWRE 108
>gi|114051261|ref|NP_001040082.1| DNA-directed RNA polymerase III subunit RPC10 [Bos taurus]
gi|109893822|sp|Q2M2S7.1|RPC10_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerase III subunit K; AltName:
Full=RNA polymerase III subunit C11; Short=RPC11
gi|85057031|gb|AAI11668.1| Polymerase (RNA) III (DNA directed) polypeptide K, 12.3 kDa [Bos
taurus]
Length = 108
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D +GGAAAWENVD+T E CPKCEHPRAYFMQ+QTR ADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|427786159|gb|JAA58531.1| Putative rna polymerase iii subunit c11 [Rhipicephalus pulchellus]
Length = 108
Score = 112 bits (280), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 49/62 (79%), Positives = 57/62 (91%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GGAAAWENVD+TEEKCPKC H RAYFMQIQTRSADEPMTTFYKCC+ +CG +W
Sbjct: 47 KDVDDVLGGAAAWENVDSTEEKCPKCSHGRAYFMQIQTRSADEPMTTFYKCCSPQCGHQW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|36938592|gb|AAQ86835.1| RNA polymerase III [Ixodes scapularis]
Length = 108
Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GGAAAWENVD+TEEKCPKC H RAYFMQIQTRSADEPMTTFYKCCN CG +W
Sbjct: 47 KDVDDVLGGAAAWENVDSTEEKCPKCGHERAYFMQIQTRSADEPMTTFYKCCNQLCGHQW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|395835535|ref|XP_003790733.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Otolemur garnettii]
Length = 113
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 49/69 (71%), Positives = 57/69 (82%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K K++D V+GGA+AWENVD+T E CPKCEHPRAYFMQ+QT SADEPMTTFYKCCN
Sbjct: 45 NRKYSKLKKVDDVLGGASAWENVDSTAESCPKCEHPRAYFMQLQTSSADEPMTTFYKCCN 104
Query: 64 IKCGFRWRE 72
+CG WR+
Sbjct: 105 AQCGHHWRD 113
>gi|149623576|ref|XP_001520478.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like,
partial [Ornithorhynchus anatinus]
Length = 68
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/62 (80%), Positives = 56/62 (90%), Gaps = 1/62 (1%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T + PKCEHPRAYFMQIQTRSADEPMTTFYKCCN++CG
Sbjct: 8 KLKEVDDVLGGAAAWENVDSTS-RAPKCEHPRAYFMQIQTRSADEPMTTFYKCCNVQCGH 66
Query: 69 RW 70
RW
Sbjct: 67 RW 68
>gi|113195665|ref|NP_001037832.1| polymerase (RNA) III (DNA directed) polypeptide K [Ciona
intestinalis]
gi|198420477|ref|XP_002119150.1| PREDICTED: hypothetical protein [Ciona intestinalis]
gi|92081584|dbj|BAE93339.1| RNA polymerase [Ciona intestinalis]
Length = 108
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K K +D V+GG+AAWENVD+TEEKCPKCEH RAYFMQIQTRSADEPMT FYKCC+ CG
Sbjct: 45 KLKAVDDVLGGSAAWENVDSTEEKCPKCEHDRAYFMQIQTRSADEPMTIFYKCCSPTCGH 104
Query: 69 RWRE 72
+WRE
Sbjct: 105 QWRE 108
>gi|195119552|ref|XP_002004295.1| GI19850 [Drosophila mojavensis]
gi|193909363|gb|EDW08230.1| GI19850 [Drosophila mojavensis]
Length = 108
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +CG W
Sbjct: 47 KEVDHVLGGVAAWENVDSTDAECPSCSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|195401703|ref|XP_002059452.1| GJ18820 [Drosophila virilis]
gi|194142458|gb|EDW58864.1| GJ18820 [Drosophila virilis]
Length = 108
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +CG W
Sbjct: 47 KEVDHVLGGVAAWENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGHNW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|195430000|ref|XP_002063045.1| GK21590 [Drosophila willistoni]
gi|194159130|gb|EDW74031.1| GK21590 [Drosophila willistoni]
Length = 108
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +CG W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPACSHNRAYFMQIQTRSADEPMTTFYKCCNHQCGHNW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|229367554|gb|ACQ58757.1| DNA-directed RNA polymerase III subunit RPC10 [Anoplopoma fimbria]
Length = 108
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 55/64 (85%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKC H RAYFMQIQTRSADEPMTTFYKCC+ CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTPETCPKCGHLRAYFMQIQTRSADEPMTTFYKCCSAPCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|195029411|ref|XP_001987566.1| GH19894 [Drosophila grimshawi]
gi|193903566|gb|EDW02433.1| GH19894 [Drosophila grimshawi]
Length = 108
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +CG W
Sbjct: 47 KEVDHVLGGIAAWENVDSTDAECPACSHKRAYFMQIQTRSADEPMTTFYKCCNHQCGNTW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|291223913|ref|XP_002731949.1| PREDICTED: DNA directed RNA polymerase III polypeptide K-like
[Saccoglossus kowalevskii]
Length = 108
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKC H RAYFMQIQTRSADEPMTTFY+CC+ +CG
Sbjct: 45 KLKELDDVLGGAAAWENVDSTAETCPKCGHDRAYFMQIQTRSADEPMTTFYRCCHPQCGH 104
Query: 69 RWRE 72
RW++
Sbjct: 105 RWKD 108
>gi|225712014|gb|ACO11853.1| DNA-directed RNA polymerase III subunit RPC10 [Lepeophtheirus
salmonis]
Length = 108
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/68 (73%), Positives = 57/68 (83%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ K KE+D V+GG+AAWENVD+TEE CP C+H RAYFMQIQTRSADEPMTTFYKC +
Sbjct: 43 RVYPKLKEVDDVLGGSAAWENVDSTEETCPNCDHHRAYFMQIQTRSADEPMTTFYKC--V 100
Query: 65 KCGFRWRE 72
CG RWRE
Sbjct: 101 SCGHRWRE 108
>gi|170061184|ref|XP_001866125.1| DNA-directed RNA polymeraseIII 12.5 kDa polypeptide [Culex
quinquefasciatus]
gi|167879526|gb|EDS42909.1| DNA-directed RNA polymeraseIII 12.5 kDa polypeptide [Culex
quinquefasciatus]
Length = 108
Score = 108 bits (269), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ K KE+DHVMGG+AAWENVD+T+ CP C H RAYFMQ+QTRSADEPMTTFYKC N
Sbjct: 41 RIYPKLKEVDHVMGGSAAWENVDSTDADCPACAHNRAYFMQMQTRSADEPMTTFYKCANP 100
Query: 65 KCGFRWRE 72
CG WR+
Sbjct: 101 VCGHNWRD 108
>gi|443697227|gb|ELT97762.1| hypothetical protein CAPTEDRAFT_5287 [Capitella teleta]
Length = 108
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T EKCPKC + RA+FMQIQTRSADEPMTT+YKCC +KCG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTNEKCPKCSNDRAFFMQIQTRSADEPMTTYYKCCAMKCGH 104
Query: 69 RWRE 72
WR+
Sbjct: 105 MWRD 108
>gi|156356304|ref|XP_001623866.1| predicted protein [Nematostella vectensis]
gi|156210604|gb|EDO31766.1| predicted protein [Nematostella vectensis]
Length = 108
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 57/64 (89%), Gaps = 2/64 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG +AWENVD+TEE+CPKC+H RAYFMQIQTRSADEPMTTFYKCC+ CG
Sbjct: 47 KLKEVDDVLGGKSAWENVDSTEERCPKCDHNRAYFMQIQTRSADEPMTTFYKCCS--CGN 104
Query: 69 RWRE 72
RW+E
Sbjct: 105 RWKE 108
>gi|289739683|gb|ADD18589.1| RNA polymerase III subunit C11 [Glossina morsitans morsitans]
Length = 108
Score = 107 bits (267), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 52/62 (83%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHVMGGAAAWENVD+T+ CP C H +AYFMQ+QTRSADEPMTTFYKC N CG W
Sbjct: 47 KEVDHVMGGAAAWENVDSTDADCPACSHKKAYFMQMQTRSADEPMTTFYKCANQLCGHNW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|402870864|ref|XP_003899419.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Papio anubis]
Length = 108
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/64 (76%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAA ENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCC+ + G
Sbjct: 45 KLKEVDDVLGGAAACENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCSAQRGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|312375718|gb|EFR23030.1| hypothetical protein AND_28749 [Anopheles darlingi]
Length = 108
Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 55/68 (80%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ K KE+DHVMGGAAAWENVD+T+ CP C + RAYFMQ+QTRSADEPMTTFYKCC
Sbjct: 41 RIYPKLKEVDHVMGGAAAWENVDSTDAVCPACGNARAYFMQMQTRSADEPMTTFYKCCEQ 100
Query: 65 KCGFRWRE 72
CG WR+
Sbjct: 101 TCGHLWRD 108
>gi|195486786|ref|XP_002091654.1| GE13781 [Drosophila yakuba]
gi|194177755|gb|EDW91366.1| GE13781 [Drosophila yakuba]
Length = 108
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +C W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCSHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|78707272|ref|NP_001027443.1| CG33785 [Drosophila melanogaster]
gi|195585169|ref|XP_002082362.1| GD25260 [Drosophila simulans]
gi|71911686|gb|AAM68394.2| CG33785 [Drosophila melanogaster]
gi|194194371|gb|EDX07947.1| GD25260 [Drosophila simulans]
Length = 108
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +C W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|410812209|gb|ACQ41870.2| MIP03842p1 [Drosophila melanogaster]
Length = 117
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +C W
Sbjct: 56 KEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTW 115
Query: 71 RE 72
R+
Sbjct: 116 RD 117
>gi|391345184|ref|XP_003746871.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Metaseiulus occidentalis]
Length = 108
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 53/62 (85%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K ID ++G AAW NVD+TEE CPKCEHPRA+F Q+QTRSADEPMTTFYKCCN+KC +W
Sbjct: 47 KPIDDILGSTAAWANVDSTEEACPKCEHPRAFFRQMQTRSADEPMTTFYKCCNMKCNHQW 106
Query: 71 RE 72
+E
Sbjct: 107 KE 108
>gi|194881659|ref|XP_001974939.1| GG20841 [Drosophila erecta]
gi|190658126|gb|EDV55339.1| GG20841 [Drosophila erecta]
Length = 108
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 45/62 (72%), Positives = 53/62 (85%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQ+QTRSADEPMTTFYKCCN +C W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCSHKRAYFMQMQTRSADEPMTTFYKCCNHECNHTW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>gi|351714373|gb|EHB17292.1| DNA-directed RNA polymerase III subunit RPC10 [Heterocephalus
glaber]
Length = 111
Score = 104 bits (260), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 55/64 (85%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E C + EHPRAYFMQ+QTRSADE MTTFYKCCN +CG
Sbjct: 48 KLKEVDDVLGGSAAWENVDSTAEPCLRFEHPRAYFMQLQTRSADELMTTFYKCCNAQCGH 107
Query: 69 RWRE 72
RWR+
Sbjct: 108 RWRD 111
>gi|449684343|ref|XP_004210603.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Hydra magnipapillata]
Length = 74
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 48/64 (75%), Positives = 55/64 (85%), Gaps = 2/64 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG AW+NVD+TEEKCPKCE +AYFMQIQTRSADEPMTTFYKCC+ CG
Sbjct: 13 KLKEVDDVLGGEDAWKNVDSTEEKCPKCEFKKAYFMQIQTRSADEPMTTFYKCCS--CGH 70
Query: 69 RWRE 72
RW+E
Sbjct: 71 RWKE 74
>gi|384488570|gb|EIE80750.1| hypothetical protein RO3G_05455 [Rhizopus delemar RA 99-880]
Length = 82
Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 54/68 (79%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R ++K KE+D V+GGA AW+NVD+TE CPKCEH RAYFMQIQ RSADEP + F+KCCN
Sbjct: 14 RKQLKRKEVDDVLGGADAWKNVDSTEATCPKCEHDRAYFMQIQIRSADEPSSLFFKCCNE 73
Query: 65 KCGFRWRE 72
C +WRE
Sbjct: 74 DCQHQWRE 81
>gi|198458321|ref|XP_001360991.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
gi|198136301|gb|EAL25567.2| GA17233 [Drosophila pseudoobscura pseudoobscura]
Length = 335
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 47/53 (88%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
KE+DHV+GG AAWENVD+T+ CP C H RAYFMQIQTRSADEPMTTFYKCCN
Sbjct: 47 KEVDHVLGGKAAWENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKCCN 99
>gi|195154030|ref|XP_002017926.1| GL17434 [Drosophila persimilis]
gi|194113722|gb|EDW35765.1| GL17434 [Drosophila persimilis]
Length = 335
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 43/53 (81%), Positives = 47/53 (88%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
KE+DHV+GG AAWENVD+T+ CP C H RAYFMQIQTRSADEPMTTFYKCCN
Sbjct: 47 KEVDHVLGGKAAWENVDSTDADCPSCSHKRAYFMQIQTRSADEPMTTFYKCCN 99
>gi|194753758|ref|XP_001959177.1| GF12752 [Drosophila ananassae]
gi|190620475|gb|EDV35999.1| GF12752 [Drosophila ananassae]
Length = 342
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/53 (79%), Positives = 49/53 (92%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
KE+DHV+GG AAWENVD+T+ +CP+C H RAYFMQ+QTRSADEPMTTFYKCCN
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPQCSHKRAYFMQLQTRSADEPMTTFYKCCN 99
>gi|339522113|gb|AEJ84221.1| DNA-directed RNA polymerase III subunit K [Capra hircus]
Length = 108
Score = 102 bits (253), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/64 (73%), Positives = 54/64 (84%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE++ V+GGAAAWENVD+T E PK EHPRAYFMQ+QTR ADEPMTTFYKC N +CG
Sbjct: 45 KLKEVEDVLGGAAAWENVDSTAEPWPKGEHPRAYFMQLQTRCADEPMTTFYKCGNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>gi|294462028|gb|ADE76569.1| unknown [Picea sitchensis]
Length = 110
Score = 101 bits (251), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 54/68 (79%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+L++K KE+D V GG AW+NVD TE CPKC +A+FMQIQ RSADEPM+TFYKCCN
Sbjct: 42 KLQLKKKEVDDVFGGEEAWKNVDRTEATCPKCSFGKAFFMQIQIRSADEPMSTFYKCCNN 101
Query: 65 KCGFRWRE 72
+C FRWR+
Sbjct: 102 QCQFRWRQ 109
>gi|196010167|ref|XP_002114948.1| hypothetical protein TRIADDRAFT_28961 [Trichoplax adhaerens]
gi|190582331|gb|EDV22404.1| hypothetical protein TRIADDRAFT_28961 [Trichoplax adhaerens]
Length = 106
Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 43/64 (67%), Positives = 54/64 (84%), Gaps = 2/64 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K K++D ++GG AAWENVD+TE CPKC+H +A+FMQIQTRSADEPMT FYKCC+ CG
Sbjct: 45 KLKQVDDILGGKAAWENVDSTEATCPKCDHNQAFFMQIQTRSADEPMTVFYKCCS--CGH 102
Query: 69 RWRE 72
RW++
Sbjct: 103 RWKD 106
>gi|328717240|ref|XP_001943300.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Acyrthosiphon pisum]
Length = 119
Score = 99.0 bits (245), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/72 (63%), Positives = 51/72 (70%), Gaps = 2/72 (2%)
Query: 1 MRCGRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK 60
M R K KEID V+GG AWENVD+ + C C H RAYF+Q+QTRSADEPMT FYK
Sbjct: 50 MLASRSFYKLKEIDSVLGGKNAWENVDSIDVVCNSCNHGRAYFLQVQTRSADEPMTVFYK 109
Query: 61 CCNIKCGFRWRE 72
CCN CG RWRE
Sbjct: 110 CCN--CGHRWRE 119
>gi|343425557|emb|CBQ69092.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Sporisorium reilianum SRZ2]
Length = 109
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 56/68 (82%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K KE+D VMGG +W+NVD+T+ CPKCE+P+A+FMQ+Q RSADEPMTTFY+C N
Sbjct: 41 RQHLKRKEVDDVMGGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEPMTTFYRCTNG 100
Query: 65 KCGFRWRE 72
+C ++W+E
Sbjct: 101 QCAYQWKE 108
>gi|388858092|emb|CCF48329.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Ustilago hordei]
Length = 109
Score = 98.2 bits (243), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 55/68 (80%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K KE+D VMGG +W+NVD+ + CPKCE+P+A+FMQ+Q RSADEPMTTFY+C N
Sbjct: 41 RQHLKRKEVDDVMGGEESWKNVDSIDAPCPKCENPKAFFMQLQIRSADEPMTTFYRCTNG 100
Query: 65 KCGFRWRE 72
+C ++WRE
Sbjct: 101 QCAYQWRE 108
>gi|268553695|ref|XP_002634834.1| Hypothetical protein CBG13943 [Caenorhabditis briggsae]
Length = 108
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 50/69 (72%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R+ K K+ID V+GG AWEN T+E+CP C H RAYFMQ+QTRSADEPMT FY+C N
Sbjct: 40 SRIYPKLKDIDDVLGGPGAWENAQVTDERCPLCSHERAYFMQLQTRSADEPMTIFYRCAN 99
Query: 64 IKCGFRWRE 72
C RW+E
Sbjct: 100 NSCAHRWKE 108
>gi|388581956|gb|EIM22262.1| hypothetical protein WALSEDRAFT_17028 [Wallemia sebi CBS 633.66]
Length = 110
Score = 96.7 bits (239), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R K+K K++D V+GG +W+NVD T +CPKC + RA+FMQIQ RSADEPMTTFY+C N
Sbjct: 42 RHKLKRKQVDDVLGGEDSWKNVDQTSAECPKCSNGRAFFMQIQIRSADEPMTTFYRCTNA 101
Query: 65 KCGFRWRE 72
KC +WRE
Sbjct: 102 KCANQWRE 109
>gi|91076202|ref|XP_972311.1| PREDICTED: similar to POLR3K [Tribolium castaneum]
gi|270015174|gb|EFA11622.1| hypothetical protein TcasGA2_TC030689 [Tribolium castaneum]
Length = 108
Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 49/69 (71%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R + K +D V+GG AW+N D T E CP+C HP AYF+Q+QTRSADEPMT FY+CCN
Sbjct: 40 NRTYFQVKSVDDVLGGEDAWKNCDVTAETCPECSHPHAYFLQVQTRSADEPMTNFYRCCN 99
Query: 64 IKCGFRWRE 72
+C WRE
Sbjct: 100 PECAHNWRE 108
>gi|161610990|gb|ABX75173.1| RNA polymerase III 12.5 kDa polypeptide [Caenorhabditis brenneri]
gi|341900172|gb|EGT56107.1| hypothetical protein CAEBREN_07334 [Caenorhabditis brenneri]
Length = 108
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 50/69 (72%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R+ K K+ID V+GG AWEN T+E+CP C H RAYFMQ+QTRSADEPMT FY+C N
Sbjct: 40 SRIYPKLKDIDDVLGGPGAWENAQITDERCPVCSHERAYFMQLQTRSADEPMTIFYRCAN 99
Query: 64 IKCGFRWRE 72
C RW+E
Sbjct: 100 NACAHRWKE 108
>gi|58269278|ref|XP_571795.1| RNA polymerase III smallest subunit [Cryptococcus neoformans var.
neoformans JEC21]
gi|57228031|gb|AAW44488.1| RNA polymerase III smallest subunit, putative [Cryptococcus
neoformans var. neoformans JEC21]
Length = 132
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K KE+D V+GG AW NVD T+ CPKC+H RAYF Q+Q RSADEPMTTFYKCC
Sbjct: 40 RTHLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC-- 97
Query: 65 KCGFRWRE 72
+CG +WRE
Sbjct: 98 ECGHQWRE 105
>gi|134114353|ref|XP_774105.1| hypothetical protein CNBG4050 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50256738|gb|EAL19458.1| hypothetical protein CNBG4050 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 132
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K KE+D V+GG AW NVD T+ CPKC+H RAYF Q+Q RSADEPMTTFYKCC
Sbjct: 40 RTHLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC-- 97
Query: 65 KCGFRWRE 72
+CG +WRE
Sbjct: 98 ECGHQWRE 105
>gi|321261337|ref|XP_003195388.1| RNA polymerase III smallest subunit [Cryptococcus gattii WM276]
gi|317461861|gb|ADV23601.1| RNA polymerase III smallest subunit, putative [Cryptococcus gattii
WM276]
Length = 131
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K KE+D V+GG AW NVD T+ CPKC+H RAYF Q+Q RSADEPMTTFYKCC
Sbjct: 40 RTHLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC-- 97
Query: 65 KCGFRWRE 72
+CG +WRE
Sbjct: 98 ECGHQWRE 105
>gi|405121978|gb|AFR96746.1| RNA polymerase III smallest subunit [Cryptococcus neoformans var.
grubii H99]
Length = 118
Score = 94.7 bits (234), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K KE+D V+GG AW NVD T+ CPKC+H RAYF Q+Q RSADEPMTTFYKCC
Sbjct: 42 RTHLKRKEVDDVLGGKEAWANVDKTDTACPKCDHRRAYFRQMQIRSADEPMTTFYKCC-- 99
Query: 65 KCGFRWRE 72
+CG +WRE
Sbjct: 100 ECGHQWRE 107
>gi|168027647|ref|XP_001766341.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682555|gb|EDQ68973.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 110
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/61 (67%), Positives = 47/61 (77%)
Query: 12 EIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E+D V+GG AW+NVD T CP C + +AYFMQIQ RSADEPMTTFYKCCNI C RW+
Sbjct: 49 EVDDVLGGEDAWKNVDRTTVTCPNCSYGQAYFMQIQIRSADEPMTTFYKCCNIDCNHRWK 108
Query: 72 E 72
E
Sbjct: 109 E 109
>gi|308456771|ref|XP_003090804.1| hypothetical protein CRE_24855 [Caenorhabditis remanei]
gi|308260535|gb|EFP04488.1| hypothetical protein CRE_24855 [Caenorhabditis remanei]
Length = 108
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 50/69 (72%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R+ K K+ID V+GG AWEN T+E+CP C H RAYFMQ+QTRSADEPMT FY+C +
Sbjct: 40 SRIYPKLKDIDDVLGGPGAWENAQITDERCPLCAHERAYFMQLQTRSADEPMTIFYRCAD 99
Query: 64 IKCGFRWRE 72
C RW+E
Sbjct: 100 NSCAHRWKE 108
>gi|324544072|gb|ADY49673.1| DNA-directed RNA polymerase III subunit RPC10 [Ascaris suum]
Length = 108
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 52/69 (75%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R+ K K++D V+GG +AWEN T+E+CP+C RAYFMQ+QTRSADEPMT FY+C N
Sbjct: 40 SRVYPKLKDLDEVLGGPSAWENAQITDERCPRCGGDRAYFMQLQTRSADEPMTVFYRCAN 99
Query: 64 IKCGFRWRE 72
+C RW+E
Sbjct: 100 SECAHRWKE 108
>gi|255072375|ref|XP_002499862.1| predicted protein [Micromonas sp. RCC299]
gi|226515124|gb|ACO61120.1| predicted protein [Micromonas sp. RCC299]
Length = 109
Score = 94.0 bits (232), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+KI K++D V+GG AW+NVD T CPKC+H +AYFMQIQ RSADEPM+TFYKCC K
Sbjct: 44 IKIARKQVDDVLGGDDAWKNVDKTSATCPKCDHGQAYFMQIQIRSADEPMSTFYKCC--K 101
Query: 66 CGFRWRE 72
C +WRE
Sbjct: 102 CANQWRE 108
>gi|195336176|ref|XP_002034718.1| GM19771 [Drosophila sechellia]
gi|194126688|gb|EDW48731.1| GM19771 [Drosophila sechellia]
Length = 325
Score = 93.2 bits (230), Expect = 2e-17, Method: Composition-based stats.
Identities = 39/49 (79%), Positives = 44/49 (89%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFY
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFY 95
>gi|312087389|ref|XP_003145453.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
gi|307759383|gb|EFO18617.1| DNA-directed RNA polymerase III polypeptide [Loa loa]
Length = 108
Score = 93.2 bits (230), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K K++D V+GG AWEN T+E+CP+C RAYFMQ+QTRSADEPMT FY+C N
Sbjct: 40 SRYYPKLKDLDEVLGGPGAWENAQITDERCPRCAGDRAYFMQLQTRSADEPMTVFYRCAN 99
Query: 64 IKCGFRWRE 72
+C RW+E
Sbjct: 100 SECAHRWKE 108
>gi|328773726|gb|EGF83763.1| hypothetical protein BATDEDRAFT_8263 [Batrachochytrium
dendrobatidis JAM81]
Length = 106
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 50/68 (73%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
RL K++D V GG +WENVD T+ CPKCEH RA+FMQIQ RSADEPM+ F++CC
Sbjct: 40 RLVFTRKDVDDVFGGEGSWENVDQTDATCPKCEHSRAFFMQIQIRSADEPMSIFFRCC-- 97
Query: 65 KCGFRWRE 72
KC +WRE
Sbjct: 98 KCANQWRE 105
>gi|303272895|ref|XP_003055809.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463783|gb|EEH61061.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 113
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 52/67 (77%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ + KE+D V+GG AW+NVD T CPKC+H +AYFMQIQ RSADEPM+TF+KC +K
Sbjct: 48 VPVTRKEVDDVLGGDDAWKNVDKTAATCPKCDHGQAYFMQIQIRSADEPMSTFFKC--VK 105
Query: 66 CGFRWRE 72
CG +WRE
Sbjct: 106 CGNQWRE 112
>gi|402591176|gb|EJW85106.1| DNA-directed RNA polymerase subunit [Wuchereria bancrofti]
Length = 108
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K K++D V+GG AWEN T E+CP+C RAYFMQ+QTRSADEPMT FY+C N +C
Sbjct: 45 KLKDLDEVLGGPGAWENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAH 104
Query: 69 RWRE 72
RW+E
Sbjct: 105 RWKE 108
>gi|170594906|ref|XP_001902171.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Brugia
malayi]
gi|158590299|gb|EDP28981.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide, putative
[Brugia malayi]
Length = 108
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 48/64 (75%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K K++D V+GG AWEN T E+CP+C RAYFMQ+QTRSADEPMT FY+C N +C
Sbjct: 45 KLKDLDEVLGGPGAWENAQITNERCPRCAGDRAYFMQLQTRSADEPMTVFYRCANSECAH 104
Query: 69 RWRE 72
RW+E
Sbjct: 105 RWKE 108
>gi|403352044|gb|EJY75527.1| DNA-directed RNA polymerase subunit [Oxytricha trifallax]
Length = 106
Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 53/68 (77%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+++++ KE+D V+GG AWENVD E +C KC + RAYFMQIQ RSADEPMTTFYKC
Sbjct: 40 KMQLERKEVDDVLGGKEAWENVDQIEAECHKCGNRRAYFMQIQIRSADEPMTTFYKC--T 97
Query: 65 KCGFRWRE 72
KC ++WRE
Sbjct: 98 KCSYQWRE 105
>gi|328855592|gb|EGG04718.1| hypothetical protein MELLADRAFT_37278 [Melampsora larici-populina
98AG31]
Length = 114
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 51/68 (75%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R + KE+D V+GG AW+NVD TE CPKCE+ RA++MQ+Q RSADEPMTTFY+C
Sbjct: 47 RTVLSRKEVDDVLGGEEAWKNVDQTEAPCPKCENNRAFYMQLQIRSADEPMTTFYRCTVS 106
Query: 65 KCGFRWRE 72
+C +WR+
Sbjct: 107 QCSTQWRD 114
>gi|323453395|gb|EGB09267.1| hypothetical protein AURANDRAFT_24870 [Aureococcus anophagefferens]
Length = 112
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/62 (64%), Positives = 45/62 (72%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K+ID +MGG AAWENVD T CP C H A+FMQ+Q RSADEPMTTF+KC CG RW
Sbjct: 51 KKIDDIMGGDAAWENVDRTAVTCPACSHGEAFFMQLQIRSADEPMTTFFKCAKTGCGHRW 110
Query: 71 RE 72
E
Sbjct: 111 NE 112
>gi|307212490|gb|EFN88221.1| DNA-directed RNA polymerase III subunit RPC10 [Harpegnathos
saltator]
Length = 109
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 48/68 (70%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R K KE V +AWE VD T+E+CP+C HPRAY+ Q+QTRSADEPMT FYKCC+
Sbjct: 42 RTYYKRKEQVDVYSSDSAWEGVDATDERCPRCSHPRAYYTQLQTRSADEPMTIFYKCCDP 101
Query: 65 KCGFRWRE 72
KC WRE
Sbjct: 102 KCMHSWRE 109
>gi|402223920|gb|EJU03983.1| hypothetical protein DACRYDRAFT_63561 [Dacryopinax sp. DJM-731 SS1]
Length = 108
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R ++K KE+D V+GG AAW++ D+T C KC + +AYFMQ+Q RSADEPMTTFY+C
Sbjct: 39 SRTRLKRKEVDDVLGGEAAWKDADSTSASCEKCGNDKAYFMQLQIRSADEPMTTFYRCTR 98
Query: 64 IKCGFRWRE 72
CG WRE
Sbjct: 99 STCGHNWRE 107
>gi|430813798|emb|CCJ28877.1| unnamed protein product [Pneumocystis jirovecii]
Length = 109
Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/72 (62%), Positives = 52/72 (72%), Gaps = 4/72 (5%)
Query: 3 CGRLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYK 60
C + +K KE+D V+GG AW+NVD TE +CP C + RAYF QIQ RSADEPMTTFYK
Sbjct: 39 CSKRIMKQKEVDDVLGGEGAWDNVDKTEAQCPVMDCGNLRAYFFQIQIRSADEPMTTFYK 98
Query: 61 CCNIKCGFRWRE 72
C KCG RWRE
Sbjct: 99 C--TKCGHRWRE 108
>gi|308801973|ref|XP_003078300.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
gi|116056751|emb|CAL53040.1| RNA polymerase III subunit C11 (ISS) [Ostreococcus tauri]
Length = 117
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+K K +D V+GG AW NVD T CP+CEH AYFMQIQ RSADEPM+ FYKCC
Sbjct: 51 RVKTTRKTVDDVLGGDEAWRNVDKTATTCPRCEHGEAYFMQIQIRSADEPMSVFYKCC-- 108
Query: 65 KCGFRWRE 72
+C +WRE
Sbjct: 109 ECAHQWRE 116
>gi|390603169|gb|EIN12561.1| hypothetical protein PUNSTDRAFT_97332 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 106
Score = 90.1 bits (222), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/69 (59%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K KE+D V+GG WE+ D T CPKC+H RAYF Q+Q RSADEPMTTFY+C
Sbjct: 39 SRTKLKRKEVDDVLGGDQMWEHADATSATCPKCDHGRAYFYQLQIRSADEPMTTFYRC-- 96
Query: 64 IKCGFRWRE 72
CG +WRE
Sbjct: 97 AACGNQWRE 105
>gi|302800796|ref|XP_002982155.1| hypothetical protein SELMODRAFT_115881 [Selaginella moellendorffii]
gi|300150171|gb|EFJ16823.1| hypothetical protein SELMODRAFT_115881 [Selaginella moellendorffii]
Length = 107
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 47/68 (69%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ +K KE+D ++GG AW+N D T C KC H AYFM +Q RSADEP T FY+CCN
Sbjct: 39 RIPLKNKEMDDILGGEDAWKNCDRTPITCAKCNHEHAYFMLVQIRSADEPSTAFYRCCNP 98
Query: 65 KCGFRWRE 72
C +RWRE
Sbjct: 99 DCSYRWRE 106
>gi|12580928|emb|CAC27153.1| RNA polymerase III smallest subunit [Platichthys flesus]
Length = 87
Score = 88.6 bits (218), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 44/52 (84%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK 60
K KE+D V+GGA AWENVD+T E CP C H RAYFMQIQTRSADEPMTTFY+
Sbjct: 36 KLKEVDDVLGGAKAWENVDSTPETCPTCGHLRAYFMQIQTRSADEPMTTFYR 87
>gi|17544244|ref|NP_500076.1| Protein RPC-11 [Caenorhabditis elegans]
gi|373220190|emb|CCD72590.1| Protein RPC-11 [Caenorhabditis elegans]
Length = 108
Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 47/69 (68%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R+ K K+ID V+GG AW N T+E CP C H RAYFMQ+QTRSADEP T FY+C +
Sbjct: 40 SRIYPKLKDIDDVLGGPGAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCAD 99
Query: 64 IKCGFRWRE 72
C RW++
Sbjct: 100 NACAHRWKD 108
>gi|332017465|gb|EGI58188.1| DNA-directed RNA polymerase III subunit RPC10 [Acromyrmex
echinatior]
Length = 110
Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 47/68 (69%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R+ KE ++ + W VD+T+E+CPKC HPRAYF Q+QTRSADEPMT FY+CCN
Sbjct: 41 SRIYFTGKERADIIDAESTWMGVDSTDERCPKCSHPRAYFKQLQTRSADEPMTLFYRCCN 100
Query: 64 IKCGFRWR 71
+C WR
Sbjct: 101 HECAHTWR 108
>gi|353244383|emb|CCA75784.1| probable Rpc11-DNA-directed RNA polymerase III subunit C11
[Piriformospora indica DSM 11827]
Length = 98
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 50/69 (72%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R +K K++D V+GG +W N T CPKCEHP A+FM++Q RSADEPMT FYKC N
Sbjct: 31 SRTHLKRKQVDDVLGGDDSWGN--QTPAPCPKCEHPMAHFMELQIRSADEPMTIFYKCAN 88
Query: 64 IKCGFRWRE 72
+CGF+W+E
Sbjct: 89 KECGFQWKE 97
>gi|145344997|ref|XP_001417010.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144577236|gb|ABO95303.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 120
Score = 87.4 bits (215), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ + K +D V+GG AW NVD T CP C H AYFMQIQ RSADEPM+ FYKC +
Sbjct: 54 RVDARKKTVDDVLGGDDAWRNVDKTSATCPGCAHDEAYFMQIQIRSADEPMSVFYKC--V 111
Query: 65 KCGFRWRE 72
KC +WRE
Sbjct: 112 KCARQWRE 119
>gi|325187761|emb|CCA22306.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 105
Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
++++ K++D V+GG AW+NVD TE +CP CEH AYFMQIQ RSADEP TTFYKC +
Sbjct: 40 HVQLQRKQVDDVLGGDEAWDNVDQTEVRCPHCEHNHAYFMQIQIRSADEPSTTFYKC--V 97
Query: 65 KCGFRWRE 72
+C +W +
Sbjct: 98 QCKKQWND 105
>gi|395330908|gb|EJF63290.1| hypothetical protein DICSQDRAFT_102442 [Dichomitus squalens
LYAD-421 SS1]
Length = 106
Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/69 (56%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K KE+D V+GG W++ D+T CPKC++ RAYF Q+Q RSADEPMTTFY+C
Sbjct: 39 SRTKLKRKEVDDVLGGEDQWKHADSTNATCPKCDNGRAYFYQLQIRSADEPMTTFYRC-- 96
Query: 64 IKCGFRWRE 72
CG WRE
Sbjct: 97 TACGNNWRE 105
>gi|302765431|ref|XP_002966136.1| hypothetical protein SELMODRAFT_85224 [Selaginella moellendorffii]
gi|300165556|gb|EFJ32163.1| hypothetical protein SELMODRAFT_85224 [Selaginella moellendorffii]
Length = 107
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 46/68 (67%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ +K KE+D ++G AW+N D T C KC H AYFM +Q RSADEP T FY+CCN
Sbjct: 39 RIPLKNKEMDDILGSEDAWKNCDRTPITCAKCNHEHAYFMLVQIRSADEPSTAFYRCCNP 98
Query: 65 KCGFRWRE 72
C +RWRE
Sbjct: 99 DCSYRWRE 106
>gi|301096910|ref|XP_002897551.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Phytophthora
infestans T30-4]
gi|262107011|gb|EEY65063.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Phytophthora
infestans T30-4]
Length = 105
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 52/68 (76%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
++ ++ K++D V+GG AWENVD TE +CP CE+ +AYFMQIQ RSADEP TTFYKC +
Sbjct: 40 KVPLQRKQVDDVLGGDEAWENVDQTETRCPHCEYNKAYFMQIQIRSADEPSTTFYKC--V 97
Query: 65 KCGFRWRE 72
+C +W +
Sbjct: 98 QCKKQWND 105
>gi|297697612|ref|XP_002825945.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Pongo
abelii]
Length = 126
Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/57 (70%), Positives = 47/57 (82%), Gaps = 4/57 (7%)
Query: 20 AAAWENVDTT----EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
A+++ NV T+ E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG RWR+
Sbjct: 70 ASSFFNVVTSFFSLPEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 126
>gi|448099787|ref|XP_004199221.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|448103594|ref|XP_004200074.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|359380643|emb|CCE82884.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
gi|359381496|emb|CCE81955.1| Piso0_002640 [Millerozyma farinosa CBS 7064]
Length = 111
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ K +D V+GG AWENVD T+ +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLSRKTVDDVLGGDGAWENVDQTKVQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG +WRE
Sbjct: 102 -VKCGHKWRE 110
>gi|409074516|gb|EKM74912.1| hypothetical protein AGABI1DRAFT_65164 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426193616|gb|EKV43549.1| hypothetical protein AGABI2DRAFT_227329 [Agaricus bisporus var.
bisporus H97]
Length = 106
Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R ++K KE+D V+GG AW + D T+ C KC H RAYF Q+Q RSADEPMTTFY+C N
Sbjct: 40 RTRLKRKEVDDVLGGDEAWAHADQTQASCDKCNHDRAYFYQLQIRSADEPMTTFYRCTN- 98
Query: 65 KCGFRWRE 72
C +WRE
Sbjct: 99 -CTHQWRE 105
>gi|325184771|emb|CCA19262.1| DNAdirected RNA polymerases III 12.5 kDa polypeptide putative
[Albugo laibachii Nc14]
Length = 107
Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 50/66 (75%), Gaps = 2/66 (3%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+K++ K++D ++GG AW+NV+ TE CP CEH AYFMQIQ RSADEP TTFYKC +
Sbjct: 42 RVKLQRKQVDAILGGDEAWDNVNQTEAWCPHCEHNHAYFMQIQIRSADEPSTTFYKC--V 99
Query: 65 KCGFRW 70
+C +W
Sbjct: 100 QCKKQW 105
>gi|68477699|ref|XP_717162.1| hypothetical protein CaO19.5360 [Candida albicans SC5314]
gi|68477862|ref|XP_717083.1| hypothetical protein CaO19.12820 [Candida albicans SC5314]
gi|46438781|gb|EAK98107.1| hypothetical protein CaO19.12820 [Candida albicans SC5314]
gi|46438863|gb|EAK98188.1| hypothetical protein CaO19.5360 [Candida albicans SC5314]
Length = 111
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLNRKEVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>gi|50311767|ref|XP_455912.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|38636481|emb|CAD58583.1| RNA polymerase III C11 subunit [Kluyveromyces lactis]
gi|49645048|emb|CAG98620.1| KLLA0F18568p [Kluyveromyces lactis]
Length = 112
Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE+D V+GG AW+NVD T +CP +C RAYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKNLPRKEVDDVLGGEGAWDNVDQTAAQCPNHDQCAGERAYFFQLQIRSADEPMTTFYKC 102
Query: 62 CNIKCGFRWRE 72
N CG +WRE
Sbjct: 103 VN--CGHKWRE 111
>gi|348679513|gb|EGZ19329.1| hypothetical protein PHYSODRAFT_491179 [Phytophthora sojae]
Length = 105
Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 51/68 (75%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
++ ++ K++D V+GG AWENVD TE +CP CE +AYFMQIQ RSADEP TTFYKC +
Sbjct: 40 KVPLQRKQVDDVLGGDEAWENVDQTETRCPHCEFNKAYFMQIQIRSADEPSTTFYKC--V 97
Query: 65 KCGFRWRE 72
+C +W +
Sbjct: 98 QCKKQWND 105
>gi|320164758|gb|EFW41657.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 112
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 35/65 (53%), Positives = 47/65 (72%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++ KE+D VMG + W+NVD T+ CPKC H +AY+ Q+QTRSADEPMT F +C N++C
Sbjct: 46 EMNKKEVDDVMGRESDWDNVDQTDANCPKCGHTKAYYRQVQTRSADEPMTIFLRCSNMEC 105
Query: 67 GFRWR 71
WR
Sbjct: 106 KHNWR 110
>gi|392585297|gb|EIW74637.1| hypothetical protein CONPUDRAFT_113195 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K K++D V+GG W++ D+T C KC H RAYF Q+Q RSADEPMTTFY+C
Sbjct: 39 SRTKMKRKQVDDVLGGDEMWKHADSTAISCDKCNHGRAYFYQLQIRSADEPMTTFYRCAG 98
Query: 64 IKCGFRWRE 72
CG+ WRE
Sbjct: 99 --CGYNWRE 105
>gi|255725610|ref|XP_002547734.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135625|gb|EER35179.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 111
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLHRKEVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>gi|241952420|ref|XP_002418932.1| RNA polymerase III subunit C11, putative [Candida dubliniensis
CD36]
gi|223642271|emb|CAX44240.1| RNA polymerase III subunit C11, putative [Candida dubliniensis
CD36]
Length = 111
Score = 85.1 bits (209), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLHRKEVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>gi|392575324|gb|EIW68458.1| hypothetical protein TREMEDRAFT_24045, partial [Tremella
mesenterica DSM 1558]
Length = 108
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R +K K++D V+GG AW NVD + CPKC+ +AY+ Q+Q RSADEPMTTFYKC +
Sbjct: 43 RTHLKRKQVDDVLGGKEAWANVDKIDATCPKCDARKAYYRQLQIRSADEPMTTFYKC--V 100
Query: 65 KCGFRWRE 72
C ++WRE
Sbjct: 101 DCSYQWRE 108
>gi|300176670|emb|CBK24335.2| unnamed protein product [Blastocystis hominis]
Length = 107
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 44/60 (73%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
RL +K KE++ V+GGAA WEN T +CP CEH AYF QIQ RSADEPMTTFY+C N
Sbjct: 39 SRLDLKRKEVEDVLGGAAQWENAPKTAARCPYCEHEVAYFQQIQIRSADEPMTTFYRCAN 98
>gi|302823870|ref|XP_002993583.1| hypothetical protein SELMODRAFT_137292 [Selaginella moellendorffii]
gi|300138595|gb|EFJ05358.1| hypothetical protein SELMODRAFT_137292 [Selaginella moellendorffii]
Length = 107
Score = 84.7 bits (208), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 45/67 (67%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ +K KE+D VMGG AW+N D T C KC + AYFM +Q RSADEP T FY+C N
Sbjct: 40 IPLKNKEVDDVMGGEDAWKNCDRTPVTCAKCNYGHAYFMLVQIRSADEPSTAFYRCGNPN 99
Query: 66 CGFRWRE 72
C FRWRE
Sbjct: 100 CSFRWRE 106
>gi|238883920|gb|EEQ47558.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Candida
albicans WO-1]
Length = 111
Score = 84.3 bits (207), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ K++D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLNRKQVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>gi|448524457|ref|XP_003868992.1| Rpc11 RNA polymerase III subunit C11 [Candida orthopsilosis Co
90-125]
gi|380353332|emb|CCG26088.1| Rpc11 RNA polymerase III subunit C11 [Candida orthopsilosis]
Length = 111
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLHRKEVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>gi|354548243|emb|CCE44980.1| hypothetical protein CPAR2_407830 [Candida parapsilosis]
Length = 111
Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLHRKEVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>gi|345562385|gb|EGX45453.1| hypothetical protein AOL_s00169g59 [Arthrobotrys oligospora ATCC
24927]
Length = 111
Score = 84.3 bits (207), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R I+ KE+D ++GG +W+NVD TE +CP C RAYF +Q RSADEPMTTFYKC
Sbjct: 43 RRHIRRKEVDDILGGEGSWDNVDNTEVQCPDEVCGGDRAYFYMVQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG +WRE
Sbjct: 102 -MKCGHKWRE 110
>gi|443918575|gb|ELU39013.1| transcription factor s-II (TFIIS) domain-containing protein
[Rhizoctonia solani AG-1 IA]
Length = 126
Score = 84.0 bits (206), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 54/85 (63%), Gaps = 17/85 (20%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFY---- 59
R +++ KE+D V+GG A W++VD T+ CPKC++ RAYFMQ+Q RSADEPMTTF
Sbjct: 40 SRTRLQRKEVDDVLGGDAMWKDVDQTDVACPKCDNGRAYFMQLQIRSADEPMTTFRLISA 99
Query: 60 -------------KCCNIKCGFRWR 71
+C N +CG++WR
Sbjct: 100 TALAHFTNSPTPDRCANSQCGYQWR 124
>gi|219121449|ref|XP_002185948.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
gi|209582797|gb|ACI65418.1| RNA polymerase C subunit 11 kDa [Phaeodactylum tricornutum CCAP
1055/1]
Length = 111
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 48/71 (67%), Gaps = 2/71 (2%)
Query: 2 RCGRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + K K +D ++GGAAAWENVD T CP C H AYFMQ+Q RSADEPM+ FYKC
Sbjct: 42 RTVKTPTKRKVVDDILGGAAAWENVDRTMAVCPACNHNEAYFMQMQIRSADEPMSIFYKC 101
Query: 62 CNIKCGFRWRE 72
++C +W +
Sbjct: 102 --VQCSHQWND 110
>gi|407037073|gb|EKE38471.1| RNA polymerase III subunit, putative [Entamoeba nuttalli P19]
Length = 107
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K K+ID V+G W+N TE C KC H AYFMQIQ RSADEPMTTFYKC N C
Sbjct: 42 ELKRKQIDAVLG-EEQWKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDC 100
Query: 67 GFRWRE 72
G++WR+
Sbjct: 101 GYQWRD 106
>gi|67477563|ref|XP_654238.1| RNA polymerase III subunit [Entamoeba histolytica HM-1:IMSS]
gi|56471268|gb|EAL48851.1| RNA polymerase III subunit, putative [Entamoeba histolytica
HM-1:IMSS]
gi|449706368|gb|EMD46228.1| RNA polymerase III subunit, putative [Entamoeba histolytica KU27]
Length = 107
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/66 (59%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K K+ID V+G W+N TE C KC H AYFMQIQ RSADEPMTTFYKC N C
Sbjct: 42 ELKRKQIDAVLG-EEQWKNAQKTEIICEKCGHNSAYFMQIQIRSADEPMTTFYKCANFDC 100
Query: 67 GFRWRE 72
G++WR+
Sbjct: 101 GYQWRD 106
>gi|385305484|gb|EIF49450.1| rna polymerase iii c11 subunit [Dekkera bruxellensis AWRI1499]
Length = 112
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/70 (58%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++ K +D V+GG AW+NVD T +CP C +AY+ QIQ RSADEPMTTFYKCC
Sbjct: 44 RKELPRKVVDDVLGGEGAWDNVDQTNAQCPVETCGSNKAYYFQIQIRSADEPMTTFYKCC 103
Query: 63 NIKCGFRWRE 72
KCG RWRE
Sbjct: 104 --KCGHRWRE 111
>gi|393216306|gb|EJD01796.1| hypothetical protein FOMMEDRAFT_20569 [Fomitiporia mediterranea
MF3/22]
Length = 106
Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R ++ K +D V+GG AAW + D+T CPKC++ RAYF Q+Q RSADEPMTTFY+C
Sbjct: 39 SREWLQRKAVDDVLGGDAAWNDADSTTVACPKCDNDRAYFYQLQIRSADEPMTTFYRC-- 96
Query: 64 IKCGFRWRE 72
C ++WRE
Sbjct: 97 TTCTYQWRE 105
>gi|150865882|ref|XP_001385273.2| RNA polymerase III C11 subunit [Scheffersomyces stipitis CBS 6054]
gi|149387138|gb|ABN67244.2| RNA polymerase III C11 subunit [Scheffersomyces stipitis CBS 6054]
Length = 111
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG AW+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLYRKEVDDVLGGDGAWDNVDQTSAQCPVDSCGGNKAYFFQLQIRSADEPMTTFYKCV 102
Query: 63 NIKCGFRWRE 72
N CG +W+E
Sbjct: 103 N--CGHKWKE 110
>gi|254572143|ref|XP_002493181.1| RNA polymerase III subunit C11 [Komagataella pastoris GS115]
gi|238032979|emb|CAY71002.1| RNA polymerase III subunit C11 [Komagataella pastoris GS115]
gi|328352804|emb|CCA39202.1| DNA-directed RNA polymerase III subunit C11 [Komagataella pastoris
CBS 7435]
Length = 111
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K++D V+GGA AW+NVD T +CP C +AYF Q+Q RSADEPMTTF KCC
Sbjct: 43 RKDLSRKQVDDVLGGAGAWDNVDQTGAQCPIDSCGGDKAYFFQLQIRSADEPMTTFLKCC 102
Query: 63 NIKCGFRWRE 72
KCG +WRE
Sbjct: 103 --KCGHQWRE 110
>gi|238598946|ref|XP_002394740.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
gi|215464278|gb|EEB95670.1| hypothetical protein MPER_05318 [Moniliophthora perniciosa FA553]
Length = 70
Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 48/69 (69%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K KE+D V+GG W++ D+T CPKC + +AYF Q+Q RSADEPMTTFY+C
Sbjct: 3 SRTKLKRKEVDDVLGGEEMWKHADSTAASCPKCNNGQAYFYQLQIRSADEPMTTFYRC-- 60
Query: 64 IKCGFRWRE 72
C +WRE
Sbjct: 61 TACAHQWRE 69
>gi|294658313|ref|XP_460643.2| DEHA2F06556p [Debaryomyces hansenii CBS767]
gi|202953038|emb|CAG88975.2| DEHA2F06556p [Debaryomyces hansenii CBS767]
Length = 111
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG AW+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLSRKEVDDVLGGEGAWDNVDQTLAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KC +WRE
Sbjct: 102 -VKCSHQWRE 110
>gi|424512956|emb|CCO66540.1| DNA-directed RNA polymerase III subunit RPC10 [Bathycoccus
prasinos]
Length = 132
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/62 (56%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K +D V+GG AW+NVDTT +CPKC H AYF+ +QTRSADEPMT F++C ++C +W
Sbjct: 72 KRVDDVLGGDDAWKNVDTTRSRCPKCSHDVAYFLMVQTRSADEPMTQFFRC--VECANQW 129
Query: 71 RE 72
+E
Sbjct: 130 KE 131
>gi|190345416|gb|EDK37297.2| hypothetical protein PGUG_01395 [Meyerozyma guilliermondii ATCC
6260]
Length = 111
Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K++D V+GG AWENVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKNLSRKQVDDVLGGDGAWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KC +WRE
Sbjct: 102 -VKCNHQWRE 110
>gi|146419525|ref|XP_001485724.1| hypothetical protein PGUG_01395 [Meyerozyma guilliermondii ATCC
6260]
Length = 111
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K++D V+GG AWENVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKNLSRKQVDDVLGGDGAWENVDQTAAQCPVDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KC +WRE
Sbjct: 102 -VKCNHQWRE 110
>gi|302830955|ref|XP_002947043.1| hypothetical protein VOLCADRAFT_56639 [Volvox carteri f.
nagariensis]
gi|300267450|gb|EFJ51633.1| hypothetical protein VOLCADRAFT_56639 [Volvox carteri f.
nagariensis]
Length = 109
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 48/62 (77%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GG AW+NV T+ C KC + +AYFM+IQTRSADEP T F+KC ++CG+RW
Sbjct: 49 KQVDDVLGGDDAWKNVAKTDATCSKCAYHQAYFMEIQTRSADEPATLFFKC--VQCGYRW 106
Query: 71 RE 72
RE
Sbjct: 107 RE 108
>gi|339237313|ref|XP_003380211.1| DNA-directed RNA polymerase III subunit RPC10 [Trichinella
spiralis]
gi|316976988|gb|EFV60173.1| DNA-directed RNA polymerase III subunit RPC10 [Trichinella
spiralis]
Length = 120
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 42/55 (76%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
R K KE+ H++GG AWEN TEEKCPKC+ +AYFMQIQ RSADEPMTTFY
Sbjct: 41 RTHPKMKELSHILGGPKAWENAQITEEKCPKCDGGQAYFMQIQIRSADEPMTTFY 95
>gi|403273558|ref|XP_003928575.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10 [Saimiri
boliviensis boliviensis]
Length = 100
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG RWR+
Sbjct: 59 QPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGHRWRD 100
>gi|344302440|gb|EGW32714.1| hypothetical protein SPAPADRAFT_60072 [Spathaspora passalidarum
NRRL Y-27907]
Length = 101
Score = 82.8 bits (203), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W++VD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 33 RKKLSRKEVDDVLGGEGTWDDVDQTAAQCPIDSCGGMKAYFFQLQIRSADEPMTTFYKC- 91
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 92 -VKCGHRWKE 100
>gi|409042226|gb|EKM51710.1| hypothetical protein PHACADRAFT_212338 [Phanerochaete carnosa
HHB-10118-sp]
Length = 106
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 49/69 (71%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R +++ K++D V+GG W++ D+T CPKC+H RAYF +Q RSADEPMTTF++C
Sbjct: 39 SRTRLERKQVDDVLGGDDMWKHADSTAASCPKCDHGRAYFYMLQIRSADEPMTTFFRC-- 96
Query: 64 IKCGFRWRE 72
CG +WRE
Sbjct: 97 AACGHQWRE 105
>gi|406604219|emb|CCH44305.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 111
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++ K+ID V+GG AW+NVD T +CP C + +AYF Q+Q RSADEPMTTF KC
Sbjct: 43 RKELPTKQIDDVLGGDGAWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFLKC- 101
Query: 63 NIKCGFRWRE 72
+KCG +WRE
Sbjct: 102 -VKCGHQWRE 110
>gi|307186185|gb|EFN71891.1| DNA-directed RNA polymerase III subunit RPC10 [Camponotus
floridanus]
Length = 104
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 42/55 (76%)
Query: 16 VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
V+ AWE VD+T+E+CPKC +PRAYF Q+QTRSADE MT FY+CCN CG W
Sbjct: 50 VVNKETAWEGVDSTDERCPKCSYPRAYFKQLQTRSADEGMTLFYRCCNHSCGHTW 104
>gi|167391478|ref|XP_001739791.1| DNA-directed RNA polymerase III subunit RPC10 [Entamoeba dispar
SAW760]
gi|165896395|gb|EDR23814.1| DNA-directed RNA polymerase III subunit RPC10, putative [Entamoeba
dispar SAW760]
Length = 107
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K K+ID V+G W+N TE C KC + AYFMQIQ RSADEPMTTFYKC N C
Sbjct: 42 ELKRKQIDAVLG-EEQWKNAQKTEIICEKCGYNSAYFMQIQIRSADEPMTTFYKCANFDC 100
Query: 67 GFRWRE 72
G++WR+
Sbjct: 101 GYQWRD 106
>gi|159483491|ref|XP_001699794.1| predicted protein [Chlamydomonas reinhardtii]
gi|158281736|gb|EDP07490.1| predicted protein [Chlamydomonas reinhardtii]
Length = 109
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D V+GG AW+NV T+ CPKC + +AYFM+IQTRSADEP T F+KC ++C RW
Sbjct: 49 KQVDDVLGGEDAWKNVAKTDATCPKCSYHQAYFMEIQTRSADEPATLFFKC--VQCAHRW 106
Query: 71 RE 72
RE
Sbjct: 107 RE 108
>gi|392566129|gb|EIW59305.1| hypothetical protein TRAVEDRAFT_28538 [Trametes versicolor
FP-101664 SS1]
Length = 106
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K K +D V+GG W++ D+T CPKC++ RAYF Q+Q RSADEPMTTFY+C
Sbjct: 39 SRTKLKRKVVDDVLGGDEQWKHADSTTATCPKCDNGRAYFYQLQIRSADEPMTTFYRC-- 96
Query: 64 IKCGFRWRE 72
C WRE
Sbjct: 97 TACANNWRE 105
>gi|344228978|gb|EGV60864.1| zinc beta-ribbon protein [Candida tenuis ATCC 10573]
Length = 101
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/69 (57%), Positives = 50/69 (72%), Gaps = 5/69 (7%)
Query: 7 KIKP-KEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCN 63
K+ P KE+D V+GG AW+NVD T +CP+ C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 34 KVLPRKEVDDVLGGEGAWDNVDQTPAQCPRDSCGGDKAYFFQLQIRSADEPMTTFYKC-- 91
Query: 64 IKCGFRWRE 72
+KC +WRE
Sbjct: 92 VKCSHQWRE 100
>gi|440291488|gb|ELP84757.1| DNA-directed RNA polymerase III subunit RPC10, putative [Entamoeba
invadens IP1]
Length = 107
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/65 (56%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
+K K++D V+G W+N T+ C KC +AYFMQIQ RSADEPMTTFYKC N CG
Sbjct: 43 LKKKQLDAVLG-EEQWKNAQKTDINCEKCGFGQAYFMQIQIRSADEPMTTFYKCANYDCG 101
Query: 68 FRWRE 72
F+WR+
Sbjct: 102 FQWRD 106
>gi|45201124|ref|NP_986694.1| AGR029Wp [Ashbya gossypii ATCC 10895]
gi|44985907|gb|AAS54518.1| AGR029Wp [Ashbya gossypii ATCC 10895]
gi|374109945|gb|AEY98850.1| FAGR029Wp [Ashbya gossypii FDAG1]
Length = 112
Score = 81.3 bits (199), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 5/71 (7%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE+D V+GG AW+NVD T +CP+ C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RRNLPRKEVDDVLGGEGAWDNVDQTAVQCPQHETCGGEKAYFFQLQIRSADEPMTTFYKC 102
Query: 62 CNIKCGFRWRE 72
+ CG +WRE
Sbjct: 103 --VTCGHKWRE 111
>gi|384249980|gb|EIE23460.1| hypothetical protein COCSUDRAFT_28851 [Coccomyxa subellipsoidea
C-169]
Length = 110
Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ +K KE+D V+GG AW+NV T CPKC H AYFM++QTRSADEP T F+KC K
Sbjct: 45 VPLKKKEVDDVLGGEDAWKNVQKTNVPCPKCGHTAAYFMEVQTRSADEPATLFFKC--EK 102
Query: 66 CGFRWRE 72
C WRE
Sbjct: 103 CAHNWRE 109
>gi|296414581|ref|XP_002836977.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295632824|emb|CAZ81168.1| unnamed protein product [Tuber melanosporum]
Length = 111
Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K KE++ V+GG AW+NVD T+ +CP +C RAYF +Q RSADEPMTTFYKC
Sbjct: 43 RKSMKRKEVEDVLGGEGAWDNVDQTDAQCPVDECGGTRAYFYMVQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+ C +WRE
Sbjct: 102 -VSCAHKWRE 110
>gi|443900393|dbj|GAC77719.1| pleiotropic drug resistance proteins [Pseudozyma antarctica T-34]
Length = 478
Score = 79.7 bits (195), Expect = 2e-13, Method: Composition-based stats.
Identities = 32/50 (64%), Positives = 42/50 (84%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEP 54
RL +K KE+D VMGG +W+NVD+T+ CPKCE+P+A+FMQ+Q RSADEP
Sbjct: 122 RLHLKRKEVDDVMGGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEP 171
>gi|407924358|gb|EKG17410.1| Zinc finger TFIIS-type protein [Macrophomina phaseolina MS6]
Length = 121
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/70 (57%), Positives = 50/70 (71%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K KE++ V+GG +WENVD TE +CP +C RAYF QIQ RSADEPMT+F+KC
Sbjct: 54 RKSMKRKEVEDVLGGKDSWENVDQTEVQCPNPQCGGERAYFYQIQIRSADEPMTSFFKC- 112
Query: 63 NIKCGFRWRE 72
KC +WRE
Sbjct: 113 -TKCAKQWRE 121
>gi|260941386|ref|XP_002614859.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851282|gb|EEQ40746.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 111
Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K++D V+GG AW+NVD T +CP C + +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKMLPRKDVDDVLGGDGAWDNVDQTAAQCPIDSCGNDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
KC +WRE
Sbjct: 102 -TKCSHQWRE 110
>gi|367006795|ref|XP_003688128.1| hypothetical protein TPHA_0M01190 [Tetrapisispora phaffii CBS 4417]
gi|357526435|emb|CCE65694.1| hypothetical protein TPHA_0M01190 [Tetrapisispora phaffii CBS 4417]
Length = 110
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 42/71 (59%), Positives = 50/71 (70%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R K++ KEID V+GG W+NVD T+ +CP KC AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLERKEIDDVLGGG--WDNVDQTKVQCPNYDKCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGKRWKE 109
>gi|170097063|ref|XP_001879751.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645154|gb|EDR09402.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 106
Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 45/69 (65%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R ++ K++D V+GG W + D T+ C KC H +AYF Q+Q RSADEPMTTFY+C
Sbjct: 39 SRTRLVRKQVDDVLGGDEMWAHADQTQASCDKCNHDQAYFYQLQIRSADEPMTTFYRC-- 96
Query: 64 IKCGFRWRE 72
C +WRE
Sbjct: 97 TSCAHQWRE 105
>gi|410074205|ref|XP_003954685.1| hypothetical protein KAFR_0A01110 [Kazachstania africana CBS 2517]
gi|372461267|emb|CCF55550.1| hypothetical protein KAFR_0A01110 [Kazachstania africana CBS 2517]
Length = 110
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 49/71 (69%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP KC AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGHRWKE 109
>gi|403217034|emb|CCK71529.1| hypothetical protein KNAG_0H01160 [Kazachstania naganishii CBS
8797]
Length = 110
Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 41/71 (57%), Positives = 50/71 (70%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R K++ KE+D V+GG W+NVD T+ +CP KC AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLERKEVDDVLGGG--WDNVDQTKVQCPNYDKCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGNRWKE 109
>gi|298714200|emb|CBJ27336.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 108
Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 46/68 (67%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
++ +K K +D +MGG AW NVD T+ CP C + A+F+ +Q RSADEPMT FYKC N
Sbjct: 43 KIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTN- 101
Query: 65 KCGFRWRE 72
C RW+E
Sbjct: 102 -CKQRWKE 108
>gi|323305599|gb|EGA59340.1| Rpc11p [Saccharomyces cerevisiae FostersB]
gi|323309844|gb|EGA63047.1| Rpc11p [Saccharomyces cerevisiae FostersO]
gi|323334176|gb|EGA75559.1| Rpc11p [Saccharomyces cerevisiae AWRI796]
gi|323338304|gb|EGA79533.1| Rpc11p [Saccharomyces cerevisiae Vin13]
gi|323349328|gb|EGA83553.1| Rpc11p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355738|gb|EGA87553.1| Rpc11p [Saccharomyces cerevisiae VL3]
gi|365766551|gb|EHN08047.1| Rpc11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii
VIN7]
Length = 100
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 33 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 90
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 91 VN--CGHRWKE 99
>gi|255712513|ref|XP_002552539.1| KLTH0C07216p [Lachancea thermotolerans]
gi|238933918|emb|CAR22101.1| KLTH0C07216p [Lachancea thermotolerans CBS 6340]
Length = 127
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE+D V+GG W+NVD T +CP +C RAYF Q+Q RSADEPMTTFYKC
Sbjct: 60 RKTLPRKEVDDVLGGG--WDNVDQTAVQCPNYDECGGERAYFFQLQIRSADEPMTTFYKC 117
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 118 --VSCGNRWRE 126
>gi|224009087|ref|XP_002293502.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220970902|gb|EED89238.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 113
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D ++GG AWENVD T CP C AYFMQ+Q RSADEPM+ FYKC +KC +W
Sbjct: 53 KKVDDILGGEKAWENVDRTAAVCPGCSFGEAYFMQMQIRSADEPMSVFYKC--VKCSHQW 110
Query: 71 RE 72
+
Sbjct: 111 ND 112
>gi|313236269|emb|CBY11591.1| unnamed protein product [Oikopleura dioica]
Length = 109
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 38/64 (59%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE+ VMGG AAWEN D+ EE C + C + RAYF Q+QTRSADEPMTTFY+C + C
Sbjct: 48 KELRDVMGGDAAWENADSMEEACTREGCTNRRAYFFQLQTRSADEPMTTFYRCTD--CAH 105
Query: 69 RWRE 72
+W+E
Sbjct: 106 QWKE 109
>gi|392591123|gb|EIW80451.1| hypothetical protein CONPUDRAFT_105468 [Coniophora puteana
RWD-64-598 SS2]
Length = 106
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 46/69 (66%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K K++D V+GG W++ D+T C KC H RAYF Q+Q RSADEPMTT +C
Sbjct: 39 SRTKMKRKQVDDVLGGDEMWKHADSTAISCDKCNHGRAYFYQLQIRSADEPMTTCARC-- 96
Query: 64 IKCGFRWRE 72
CG+ WRE
Sbjct: 97 AGCGYNWRE 105
>gi|363749925|ref|XP_003645180.1| hypothetical protein Ecym_2652 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888813|gb|AET38363.1| Hypothetical protein Ecym_2652 [Eremothecium cymbalariae
DBVPG#7215]
Length = 112
Score = 77.8 bits (190), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R + K++D +GG AW+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RQTLPRKQVDDALGGEGAWDNVDQTAIQCPNHETCGGEKAYFFQLQIRSADEPMTTFYKC 102
Query: 62 CNIKCGFRWRE 72
+ CG +WRE
Sbjct: 103 --VTCGNKWRE 111
>gi|6320250|ref|NP_010330.1| Rpc11p [Saccharomyces cerevisiae S288c]
gi|3334319|sp|Q04307.1|RPC10_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerases III 12.5 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C11
gi|798898|emb|CAA89076.1| unknown [Saccharomyces cerevisiae]
gi|4210977|gb|AAD12060.1| RNA polymerase III C11 subunit [Saccharomyces cerevisiae]
gi|45269165|gb|AAS55962.1| YDR045C [Saccharomyces cerevisiae]
gi|151942036|gb|EDN60392.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
gi|190404984|gb|EDV08251.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Saccharomyces cerevisiae RM11-1a]
gi|256270826|gb|EEU05973.1| Rpc11p [Saccharomyces cerevisiae JAY291]
gi|259145290|emb|CAY78554.1| Rpc11p [Saccharomyces cerevisiae EC1118]
gi|285811069|tpg|DAA11893.1| TPA: Rpc11p [Saccharomyces cerevisiae S288c]
gi|349577114|dbj|GAA22283.1| K7_Rpc11p [Saccharomyces cerevisiae Kyokai no. 7]
gi|401626309|gb|EJS44261.1| rpc11p [Saccharomyces arboricola H-6]
Length = 110
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGHRWKE 109
>gi|392300156|gb|EIW11247.1| Rpc11p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 110
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGHRWKE 109
>gi|254580487|ref|XP_002496229.1| ZYRO0C13574p [Zygosaccharomyces rouxii]
gi|238939120|emb|CAR27296.1| ZYRO0C13574p [Zygosaccharomyces rouxii]
Length = 110
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP KC AYF Q+Q RSADEPMTTF+KC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKVQCPNYDKCAGESAYFFQLQIRSADEPMTTFFKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGNRWKE 109
>gi|367013272|ref|XP_003681136.1| hypothetical protein TDEL_0D03410 [Torulaspora delbrueckii]
gi|359748796|emb|CCE91925.1| hypothetical protein TDEL_0D03410 [Torulaspora delbrueckii]
Length = 110
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKVQCPNYDICAGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGNRWKE 109
>gi|156843581|ref|XP_001644857.1| hypothetical protein Kpol_1065p14 [Vanderwaltozyma polyspora DSM
70294]
gi|156115509|gb|EDO16999.1| hypothetical protein Kpol_1065p14 [Vanderwaltozyma polyspora DSM
70294]
Length = 110
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 49/71 (69%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R +++ KEID V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKELERKEIDDVLGGG--WDNVDQTKVQCPNYDNCAGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGNRWKE 109
>gi|365761585|gb|EHN03230.1| Rpc11p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 110
Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGNRWKE 109
>gi|444323471|ref|XP_004182376.1| hypothetical protein TBLA_0I01990 [Tetrapisispora blattae CBS 6284]
gi|387515423|emb|CCH62857.1| hypothetical protein TBLA_0I01990 [Tetrapisispora blattae CBS 6284]
Length = 111
Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 44 RKKLPRKEVDDVLGGG--WDNVDQTKVQCPNYDNCGGESAYFFQLQIRSADEPMTTFYKC 101
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 102 VN--CGNRWKE 110
>gi|296825916|ref|XP_002850889.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma otae CBS
113480]
gi|238838443|gb|EEQ28105.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma otae CBS
113480]
Length = 117
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ VMGG W+N D+ +CP CE RA+F Q+Q RSADEPMTTFYKC
Sbjct: 49 RTEMKRKEVADVMGGKDEWKNADSMPAQCPAEGCEGDRAFFYQLQIRSADEPMTTFYKCS 108
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 109 --VCGTRWRE 116
>gi|453088666|gb|EMF16706.1| hypothetical protein SEPMUDRAFT_34035 [Mycosphaerella populorum
SO2202]
Length = 121
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K K++ ++GGA +W+NVD TE KCP CE AYF Q+Q RSADEPMT FY+C
Sbjct: 53 RKNMKLKDVGDILGGADSWKNVDQTEAKCPAEGCESRNAYFRQVQIRSADEPMTRFYRC- 111
Query: 63 NIKCGFRWRE 72
++C WRE
Sbjct: 112 -VECTREWRE 120
>gi|452821122|gb|EME28156.1| DNA-directed RNA polymerase III subunit C11 [Galdieria sulphuraria]
Length = 107
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 46/65 (70%), Gaps = 2/65 (3%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
++ K+ ++GG WE D T+ CP+C H +AYF Q+QTRSADEPM+TFY+C + CG
Sbjct: 44 LQKKQEADILGGDKQWELADQTDTLCPRCSHGKAYFFQMQTRSADEPMSTFYRC--VHCG 101
Query: 68 FRWRE 72
+W+E
Sbjct: 102 HQWKE 106
>gi|365982255|ref|XP_003667961.1| hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
gi|343766727|emb|CCD22718.1| hypothetical protein NDAI_0A05630 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP KC AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKVQCPNYEKCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N C RW+E
Sbjct: 101 VN--CAHRWKE 109
>gi|452988365|gb|EME88120.1| hypothetical protein MYCFIDRAFT_25627, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 117
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K +D ++GGA +W+NVD TE KCP +CE AYF Q+Q RSADEPMT FY+C
Sbjct: 49 RKNMNLKAVDDILGGADSWKNVDKTEAKCPNEQCESREAYFRQVQIRSADEPMTRFYRC- 107
Query: 63 NIKCGFRWRE 72
+C WRE
Sbjct: 108 -TECTREWRE 116
>gi|449549271|gb|EMD40237.1| hypothetical protein CERSUDRAFT_46075 [Ceriporiopsis subvermispora
B]
Length = 107
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R K+K KE+D V+GG W++ D T CPKC+H RAYF Q+Q RSADEPMTT C
Sbjct: 39 SRTKLKRKEVDDVLGGDEMWKHADATTVTCPKCDHNRAYFYQLQIRSADEPMTTCL-CRC 97
Query: 64 IKCGFRWRE 72
C WRE
Sbjct: 98 AACAHNWRE 106
>gi|452848304|gb|EME50236.1| hypothetical protein DOTSEDRAFT_122384 [Dothistroma septosporum
NZE10]
Length = 128
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K K ++ ++GGA +W+NVD TE KC C+ AYF Q+Q RSADEPMT+FYKC
Sbjct: 60 RKTMKLKAVEDILGGADSWKNVDQTEAKCANENCDSRMAYFRQVQIRSADEPMTSFYKC- 118
Query: 63 NIKCGFRWRE 72
+KC WRE
Sbjct: 119 -VKCTREWRE 127
>gi|225556478|gb|EEH04766.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces capsulatus
G186AR]
gi|240273584|gb|EER37104.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H143]
gi|325087485|gb|EGC40795.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 117
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ V+GG W+N D+ +CP C+ RAYF Q+Q RSADEPMTTF+KC
Sbjct: 49 RTEMKRKEVSDVLGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKC- 107
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 108 -TTCGARWRE 116
>gi|169617173|ref|XP_001802001.1| hypothetical protein SNOG_11763 [Phaeosphaeria nodorum SN15]
gi|160703355|gb|EAT80807.2| hypothetical protein SNOG_11763 [Phaeosphaeria nodorum SN15]
Length = 118
Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K KE++ ++GG AW+NVD T+ +CP KC + AY+ Q+Q RSADEPMT FYKC
Sbjct: 51 RKYMKKKEVEDILGGKGAWDNVDKTQVQCPNEKCRNDEAYWYQLQIRSADEPMTAFYKC- 109
Query: 63 NIKCGFRWRE 72
KC WRE
Sbjct: 110 -TKCAKEWRE 118
>gi|308162494|gb|EFO64883.1| RNA polymerase III subunit C11 [Giardia lamblia P15]
Length = 105
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L + K +D V+GG AW+ D T+ CP C P A+++QIQ RS+DEPM+ FY+CC +
Sbjct: 40 LTLTRKSVDPVLGGETAWQGADKTQNPCPICAFPDAFWIQIQIRSSDEPMSRFYRCC--Q 97
Query: 66 CGFRWRE 72
C +WRE
Sbjct: 98 CAHQWRE 104
>gi|50289467|ref|XP_447165.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526474|emb|CAG60098.1| unnamed protein product [Candida glabrata]
Length = 100
Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 33 RKKLPRKEVDDVLGGG--WDNVDQTKVQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 90
Query: 62 CNIKCGFRWRE 72
N C RW+E
Sbjct: 91 VN--CAHRWKE 99
>gi|451847238|gb|EMD60546.1| hypothetical protein COCSADRAFT_163870 [Cochliobolus sativus
ND90Pr]
gi|451997829|gb|EMD90294.1| hypothetical protein COCHEDRAFT_1178878 [Cochliobolus
heterostrophus C5]
Length = 118
Score = 75.1 bits (183), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K KE++ ++GG AW+NVD TE +CP KC + AY+ Q+Q RSADEPMT FYKC
Sbjct: 51 RKYMKKKEVEDILGGKGAWDNVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKC- 109
Query: 63 NIKCGFRWRE 72
+C WRE
Sbjct: 110 -TQCAKEWRE 118
>gi|5531801|gb|AAD44475.1|AF076964_4 transcription factor IIS homolog, partial [Giardia intestinalis]
Length = 70
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L + K +D V+GG AW+ D T+ CP C P A+++Q+Q RS+DEPM+ FY+CC +
Sbjct: 5 LTLTRKSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCC--Q 62
Query: 66 CGFRWRE 72
C +WRE
Sbjct: 63 CAHQWRE 69
>gi|330936351|ref|XP_003305354.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
gi|311317653|gb|EFQ86540.1| hypothetical protein PTT_18169 [Pyrenophora teres f. teres 0-1]
Length = 108
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K K+++ V+GG AW NVD TE +CP KC + AY+ Q+Q RSADEPMT FYKC
Sbjct: 41 RKYMKKKDVEDVIGGKDAWANVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKC- 99
Query: 63 NIKCGFRWRE 72
+CG WRE
Sbjct: 100 -TQCGKEWRE 108
>gi|159113781|ref|XP_001707116.1| RNA polymerase III subunit C11 [Giardia lamblia ATCC 50803]
gi|157435219|gb|EDO79442.1| RNA polymerase III subunit C11 [Giardia lamblia ATCC 50803]
Length = 105
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 45/67 (67%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L + K +D V+GG AW+ D T+ CP C P A+++Q+Q RS+DEPM+ FY+CC +
Sbjct: 40 LTLTRKSVDPVLGGETAWQGADKTQNPCPVCAFPDAFWIQMQIRSSDEPMSRFYRCC--Q 97
Query: 66 CGFRWRE 72
C +WRE
Sbjct: 98 CAHQWRE 104
>gi|366988479|ref|XP_003674006.1| hypothetical protein NCAS_0A10670 [Naumovozyma castellii CBS 4309]
gi|342299869|emb|CCC67625.1| hypothetical protein NCAS_0A10670 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 47/71 (66%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP---KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE+D V+GG W+NVD T+ +CP KC AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKTLPRKEVDDVLGGG--WDNVDQTKVQCPNYEKCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N C RW+E
Sbjct: 101 VN--CAHRWKE 109
>gi|19114147|ref|NP_593235.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces pombe 972h-]
gi|3334318|sp|O13896.1|RPC10_SCHPO RecName: Full=DNA-directed RNA polymerase III subunit RPC10;
Short=RNA polymerase III subunit C10; AltName:
Full=DNA-directed RNA polymerases III 12.5 kDa
polypeptide; AltName: Full=RNA polymerase III subunit
C11
gi|4877777|gb|AAD31425.1|AF126532_1 putative DNA-directed RNA polymerase III C11 subunit
[Schizosaccharomyces pombe]
gi|2414598|emb|CAB16575.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces pombe]
gi|2921268|gb|AAD03488.1| RNA polymerase subunit [Schizosaccharomyces pombe]
Length = 109
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKC--PKCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE+D V+GG A+E+ TE C KC++ RAYF Q+Q RSADEPM+TFY+C
Sbjct: 40 SRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC 99
Query: 62 CNIKCGFRWRE 72
KC F+WRE
Sbjct: 100 --TKCKFQWRE 108
>gi|189188138|ref|XP_001930408.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187972014|gb|EDU39513.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 108
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/70 (54%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K K++D V+GG AW NVD TE +CP KC + AY+ Q+Q RSADEPMT FYKC
Sbjct: 41 RKYMKKKDVDDVIGGKDAWANVDKTEVQCPNEKCRNHEAYWYQLQIRSADEPMTAFYKC- 99
Query: 63 NIKCGFRWRE 72
+C WRE
Sbjct: 100 -TQCAKEWRE 108
>gi|396461030|ref|XP_003835127.1| similar to DNA-directed RNA polymerase III subunit RPC10
[Leptosphaeria maculans JN3]
gi|312211677|emb|CBX91762.1| similar to DNA-directed RNA polymerase III subunit RPC10
[Leptosphaeria maculans JN3]
Length = 108
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K KE++ ++GG AW+NVD T +CP KC + AY+ Q+Q RSADEPMT FYKC
Sbjct: 41 RKYLKKKEVEDILGGKGAWDNVDRTGVQCPNEKCRNDEAYWYQLQIRSADEPMTAFYKC- 99
Query: 63 NIKCGFRWRE 72
KC WRE
Sbjct: 100 -TKCAKEWRE 108
>gi|422294442|gb|EKU21742.1| DNA-directed RNA polymerase III subunit RPC10 [Nannochloropsis
gaditana CCMP526]
Length = 106
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+K+K KE+D V+GG AW D T CP C+ A+F+Q+Q RSADEPMTTFY+C
Sbjct: 41 MKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRC--TL 98
Query: 66 CGFRW 70
C RW
Sbjct: 99 CANRW 103
>gi|398412167|ref|XP_003857412.1| hypothetical protein MYCGRDRAFT_33562 [Zymoseptoria tritici IPO323]
gi|339477297|gb|EGP92388.1| hypothetical protein MYCGRDRAFT_33562 [Zymoseptoria tritici IPO323]
Length = 143
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K ++ ++GGA +W+NVD TE KCP C+ AYF Q+Q RSADEP T+FYKC
Sbjct: 75 RKSMTLKPVEDILGGAESWKNVDKTEAKCPTESCDSRMAYFRQVQIRSADEPSTSFYKC- 133
Query: 63 NIKCGFRWRE 72
+KC WRE
Sbjct: 134 -VKCTREWRE 142
>gi|303317098|ref|XP_003068551.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|240108232|gb|EER26406.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Coccidioides posadasii C735 delta SOWgp]
gi|320038457|gb|EFW20393.1| RNA polymerase III subunit C11 [Coccidioides posadasii str.
Silveira]
Length = 117
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ VMGG W+N D+ +CP C+ RA+F Q+Q RSADEPMTTF KC
Sbjct: 49 RTEMKRKEVADVMGGKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKC- 107
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 108 -TTCGARWRE 116
>gi|119187323|ref|XP_001244268.1| hypothetical protein CIMG_03709 [Coccidioides immitis RS]
gi|392870986|gb|EAS32833.2| RNA polymerase III subunit C11 [Coccidioides immitis RS]
Length = 117
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ VMGG W+N D+ +CP C+ RA+F Q+Q RSADEPMTTF KC
Sbjct: 49 RTEMKRKEVADVMGGKDEWKNADSMATQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKC- 107
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 108 -TTCGARWRE 116
>gi|358054003|dbj|GAA99802.1| hypothetical protein E5Q_06505 [Mixia osmundae IAM 14324]
Length = 108
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K K++D V+GG AW+NVD+ C K C RAY+MQIQTRSADEPMTTFY+C C
Sbjct: 45 KRKQVDDVLGGEDAWKNVDSMAVPCTKKDCNGTRAYYMQIQTRSADEPMTTFYRC--TLC 102
Query: 67 GFRWRE 72
W+E
Sbjct: 103 AHNWKE 108
>gi|226288892|gb|EEH44404.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb18]
Length = 137
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ V+GG W+N D+ +CP C+ RA+F Q+Q RSADEPMTTF KC
Sbjct: 69 RTEMKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKCT 128
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 129 T--CGARWRE 136
>gi|449305125|gb|EMD01132.1| hypothetical protein BAUCODRAFT_21075 [Baudoinia compniacensis UAMH
10762]
Length = 121
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K + V+GGA +W+NVD TE +C C+ +AYF Q+Q RSADEPMT FYKC
Sbjct: 53 RKTMDLKAPEAVLGGAESWKNVDKTEVRCKNETCDSLQAYFRQVQIRSADEPMTNFYKC- 111
Query: 63 NIKCGFRWRE 72
+KCG WRE
Sbjct: 112 -VKCGADWRE 120
>gi|290985184|ref|XP_002675306.1| predicted protein [Naegleria gruberi]
gi|284088901|gb|EFC42562.1| predicted protein [Naegleria gruberi]
Length = 109
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 46/67 (68%), Gaps = 4/67 (5%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ ++ KE+D V+ A W +T E KC KC+H +AYF QTRSADEPMT F+KCC K
Sbjct: 46 MNLEKKEVDDVIDDEANWS--ETVETKCGKCDHNKAYFQMFQTRSADEPMTQFFKCC--K 101
Query: 66 CGFRWRE 72
CG +W+E
Sbjct: 102 CGHQWKE 108
>gi|253742495|gb|EES99325.1| RNA polymerase III subunit C11 [Giardia intestinalis ATCC 50581]
Length = 105
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 2/67 (2%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L + K +D V+GG AW+ D T CP C P A+++Q+Q RS+DEPM+ FY+CC +
Sbjct: 40 LTLTRKSVDPVLGGETAWQGADKTHNPCPICMFPEAFWIQMQIRSSDEPMSRFYRCC--Q 97
Query: 66 CGFRWRE 72
C +WRE
Sbjct: 98 CAHQWRE 104
>gi|255935413|ref|XP_002558733.1| Pc13g02950 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583353|emb|CAP91364.1| Pc13g02950 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 116
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+K KE+D V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 51 MKQKEVDDVFGGKEEFANADSVATQCPAESCNGERAYFFQLQIRSADEPMTTFLKC--TS 108
Query: 66 CGFRWRE 72
CG RWRE
Sbjct: 109 CGARWRE 115
>gi|295671180|ref|XP_002796137.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226284270|gb|EEH39836.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 128
Score = 73.2 bits (178), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ V+GG W+N D+ +CP C+ RA+F Q+Q RSADEPMTTF KC
Sbjct: 60 RTEMKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLKC- 118
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 119 -TTCGARWRE 127
>gi|164659244|ref|XP_001730746.1| hypothetical protein MGL_1745 [Malassezia globosa CBS 7966]
gi|159104644|gb|EDP43532.1| hypothetical protein MGL_1745 [Malassezia globosa CBS 7966]
Length = 68
Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 45/63 (71%), Gaps = 5/63 (7%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ ++ K++D VMGG +W+NVD+T+ CPKC++ RAYFMQ+Q RSADEP T I+
Sbjct: 1 MYLERKQVDDVMGGEDSWKNVDSTDATCPKCDNGRAYFMQLQIRSADEPSTFL-----IR 55
Query: 66 CGF 68
GF
Sbjct: 56 FGF 58
>gi|71021153|ref|XP_760807.1| hypothetical protein UM04660.1 [Ustilago maydis 521]
gi|46100284|gb|EAK85517.1| hypothetical protein UM04660.1 [Ustilago maydis 521]
Length = 111
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 30/50 (60%), Positives = 41/50 (82%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEP 54
R +K K++D VMGG +W+NVD+T+ CPKCE+P+A+FMQ+Q RSADEP
Sbjct: 41 RQHLKRKQVDDVMGGEESWKNVDSTDAPCPKCENPKAFFMQLQIRSADEP 90
>gi|322799904|gb|EFZ21045.1| hypothetical protein SINV_08736 [Solenopsis invicta]
Length = 110
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/61 (50%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++ ++ +A TEE+CPKC HPRA+F Q QTRSADEPM+ FY CC+ C ++W
Sbjct: 50 KKLSDILDSKSALLGQQATEERCPKCSHPRAFFEQRQTRSADEPMSLFYTCCS--CSYKW 107
Query: 71 R 71
R
Sbjct: 108 R 108
>gi|425769916|gb|EKV08395.1| DNA-directed RNA polymerase subunit [Penicillium digitatum Pd1]
gi|425771438|gb|EKV09881.1| DNA-directed RNA polymerase subunit [Penicillium digitatum PHI26]
Length = 116
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 42/67 (62%), Gaps = 4/67 (5%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+K KE+D V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 51 MKQKEVDDVFGGKEEFANADSVGTQCPAESCHGERAYFFQLQIRSADEPMTTFLKC--TS 108
Query: 66 CGFRWRE 72
CG RWRE
Sbjct: 109 CGARWRE 115
>gi|213408248|ref|XP_002174895.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces japonicus yFS275]
gi|212002942|gb|EEB08602.1| DNA-directed RNA polymerase III complex subunit Rpc11
[Schizosaccharomyces japonicus yFS275]
Length = 109
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 48/70 (68%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + K++D V+GG AWE+ T+ C C++ RAYF Q+Q RSADEPM+TFY+C
Sbjct: 41 RHEFAQKQVDDVLGGKEAWESNQQTDIPCENKNCDNRRAYFFQLQIRSADEPMSTFYRC- 99
Query: 63 NIKCGFRWRE 72
+CG++WRE
Sbjct: 100 -TECGYQWRE 108
>gi|299741058|ref|XP_001834192.2| hypothetical protein CC1G_09692 [Coprinopsis cinerea
okayama7#130]
gi|298404536|gb|EAU87595.2| hypothetical protein CC1G_09692 [Coprinopsis cinerea
okayama7#130]
Length = 107
Score = 72.0 bits (175), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 43/61 (70%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R +++ K++D V+GG W++ D T+ CPKC +AYF Q+Q RSADEPMTTFY+ +
Sbjct: 39 SRTRMQLKQVDDVLGGDEMWKHADQTQASCPKCNFDKAYFYQLQIRSADEPMTTFYRFVS 98
Query: 64 I 64
+
Sbjct: 99 L 99
>gi|302675000|ref|XP_003027184.1| hypothetical protein SCHCODRAFT_61335 [Schizophyllum commune H4-8]
gi|300100870|gb|EFI92281.1| hypothetical protein SCHCODRAFT_61335 [Schizophyllum commune H4-8]
Length = 110
Score = 72.0 bits (175), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/72 (50%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTF----YK 60
R ++K KEID V GG W++ +T +C C H RAYF Q+Q RSADEPMTT+ ++
Sbjct: 40 RTRMKRKEIDDVFGGDEQWKHAQSTMAQCEACSHDRAYFYQLQIRSADEPMTTWALIIFR 99
Query: 61 CCNIKCGFRWRE 72
C + CG RWRE
Sbjct: 100 CAS--CGNRWRE 109
>gi|315055069|ref|XP_003176909.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma gypseum
CBS 118893]
gi|311338755|gb|EFQ97957.1| DNA-directed RNA polymerase III subunit RPC10 [Arthroderma gypseum
CBS 118893]
Length = 104
Score = 71.2 bits (173), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ V+GG W+N ++ +CP CE RA+F Q+Q RSADEPMTTFYKC
Sbjct: 36 RKEMKRKEVADVLGGKDEWKNAESMPAQCPAEGCEGDRAFFFQLQIRSADEPMTTFYKCS 95
Query: 63 NIKCGFRWRE 72
C RWRE
Sbjct: 96 --ACDARWRE 103
>gi|121702561|ref|XP_001269545.1| RNA polymerase III subunit C11, putative [Aspergillus clavatus NRRL
1]
gi|119397688|gb|EAW08119.1| RNA polymerase III subunit C11, putative [Aspergillus clavatus NRRL
1]
Length = 116
Score = 70.9 bits (172), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/67 (52%), Positives = 43/67 (64%), Gaps = 4/67 (5%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+K KE++ V+GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 51 MKQKEVEDVLGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKC--TT 108
Query: 66 CGFRWRE 72
CG RWRE
Sbjct: 109 CGARWRE 115
>gi|327307734|ref|XP_003238558.1| RNA polymerase III subunit C11 [Trichophyton rubrum CBS 118892]
gi|326458814|gb|EGD84267.1| RNA polymerase III subunit C11 [Trichophyton rubrum CBS 118892]
gi|326473818|gb|EGD97827.1| RNA polymerase III subunit C11 [Trichophyton tonsurans CBS 112818]
gi|326478332|gb|EGE02342.1| DNA-directed RNA polymerase III subunit RPC10 [Trichophyton equinum
CBS 127.97]
Length = 117
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCC 62
R ++K KE+ V+GG W+N ++ +CP CE RA+F Q+Q RSADEPMTTFYKC
Sbjct: 49 RKEMKRKEVADVLGGKDEWKNAESMPAQCPAEGCEGDRAFFFQLQIRSADEPMTTFYKCS 108
Query: 63 NIKCGFRWRE 72
C RWRE
Sbjct: 109 --VCDARWRE 116
>gi|169778755|ref|XP_001823842.1| DNA-directed RNA polymerase III subunit RPC10 [Aspergillus oryzae
RIB40]
gi|238499325|ref|XP_002380897.1| RNA polymerase III subunit C11, putative [Aspergillus flavus
NRRL3357]
gi|83772581|dbj|BAE62709.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692650|gb|EED48996.1| RNA polymerase III subunit C11, putative [Aspergillus flavus
NRRL3357]
gi|391870847|gb|EIT80017.1| RNA polymerase III subunit C11 [Aspergillus oryzae 3.042]
Length = 117
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 44/70 (62%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
+ ++K KE++ V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 49 KTEMKQKEVEDVFGGKEEFANADSMATQCPAENCNGDRAYFFQLQIRSADEPMTTFLKC- 107
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 108 -TSCGARWRE 116
>gi|115447857|ref|NP_001047708.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|50251233|dbj|BAD27819.1| putative DNA-directed RNA polymerase III [Oryza sativa Japonica
Group]
gi|50251924|dbj|BAD27861.1| putative DNA-directed RNA polymerase II [Oryza sativa Japonica
Group]
gi|113537239|dbj|BAF09622.1| Os02g0672700 [Oryza sativa Japonica Group]
gi|215708708|dbj|BAG93977.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765354|dbj|BAG87051.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 110
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ ++ KE++ + + A +N T CP+C++ AY+ Q+Q RSADEPM+TFYKCC
Sbjct: 42 KARLVKKEVEPIFSDSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCRE 101
Query: 65 KCGFRWRE 72
+C F WRE
Sbjct: 102 ECQFDWRE 109
>gi|125540641|gb|EAY87036.1| hypothetical protein OsI_08435 [Oryza sativa Indica Group]
gi|222623425|gb|EEE57557.1| hypothetical protein OsJ_07898 [Oryza sativa Japonica Group]
Length = 106
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ ++ KE++ + + A +N T CP+C++ AY+ Q+Q RSADEPM+TFYKCC
Sbjct: 38 KARLVKKEVEPIFSDSDAMKNAPKTTTTCPRCQNGEAYYRQMQIRSADEPMSTFYKCCRE 97
Query: 65 KCGFRWRE 72
+C F WRE
Sbjct: 98 ECQFDWRE 105
>gi|70991076|ref|XP_750387.1| RNA polymerase III subunit C11 [Aspergillus fumigatus Af293]
gi|66848019|gb|EAL88349.1| RNA polymerase III subunit C11, putative [Aspergillus fumigatus
Af293]
gi|159130861|gb|EDP55974.1| RNA polymerase III subunit C11, putative [Aspergillus fumigatus
A1163]
Length = 116
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
+ +K KE++ V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 48 KTTMKQKEVEDVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKC- 106
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 107 -TTCGARWRE 115
>gi|380489139|emb|CCF36903.1| transcription factor S-II [Colletotrichum higginsianum]
Length = 110
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE + V GG W+N D +CPK C A F Q+Q RSADEPMTTFYKC
Sbjct: 41 SRRDFERKEREDVFGGPGEWDNADKARAQCPKEGCNGEEAAFFQVQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 --MTCGNRWRE 109
>gi|119496511|ref|XP_001265029.1| RNA polymerase III subunit C11, putative [Neosartorya fischeri NRRL
181]
gi|119413191|gb|EAW23132.1| RNA polymerase III subunit C11, putative [Neosartorya fischeri NRRL
181]
Length = 116
Score = 69.7 bits (169), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
+ +K KE++ V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 48 KTTMKQKEVEDVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKC- 106
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 107 -TTCGARWRE 115
>gi|145255368|ref|XP_001398943.1| DNA-directed RNA polymerase III subunit RPC10 [Aspergillus niger
CBS 513.88]
gi|134084534|emb|CAK43287.1| unnamed protein product [Aspergillus niger]
Length = 117
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
+ +K KE++ V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 49 KTPMKQKEVEDVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKC- 107
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 108 -TTCGARWRE 116
>gi|350630739|gb|EHA19111.1| hypothetical protein ASPNIDRAFT_128501 [Aspergillus niger ATCC
1015]
Length = 111
Score = 69.3 bits (168), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/70 (50%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
+ +K KE++ V GG + N D+ +CP C RAYF Q+Q RSADEPMTTF KC
Sbjct: 44 KTPMKQKEVEDVFGGKEEFANADSMATQCPAEDCNGDRAYFFQLQIRSADEPMTTFLKC- 102
Query: 63 NIKCGFRWRE 72
CG RWRE
Sbjct: 103 -TTCGARWRE 111
>gi|294896422|ref|XP_002775549.1| DNA-directed RNA polymerase III, putative [Perkinsus marinus ATCC
50983]
gi|239881772|gb|EER07365.1| DNA-directed RNA polymerase III, putative [Perkinsus marinus ATCC
50983]
Length = 327
Score = 68.6 bits (166), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/57 (56%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKC 61
+I KE++ V+GG AW++V TE CP C+ RAYF Q+Q RSADEPMTTFY+C
Sbjct: 44 EILHKEVEDVLGGPDAWKDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTFYRC 100
>gi|440790887|gb|ELR12150.1| RNA polymerase III, putative [Acanthamoeba castellanii str. Neff]
Length = 107
Score = 68.6 bits (166), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 45/64 (70%), Gaps = 3/64 (4%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
++ K++D ++G +EN TE KCP+C H RA F Q+QTRSADEP +TFY+C +KC
Sbjct: 45 LERKQVDDILGDEV-FENAQQTEAKCPECGHDRANFFQLQTRSADEPSSTFYRC--MKCA 101
Query: 68 FRWR 71
+W+
Sbjct: 102 SKWK 105
>gi|268567816|ref|XP_002647879.1| Hypothetical protein CBG23695 [Caenorhabditis briggsae]
Length = 240
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 27/41 (65%), Positives = 32/41 (78%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+CP C H RAYFMQ+QTRSADEP+T FY+C N C RW+E
Sbjct: 200 RCPLCSHERAYFMQLQTRSADEPITIFYRCANNSCAHRWKE 240
>gi|406859226|gb|EKD12295.1| RNA polymerase 3 c11 subunit [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 121
Score = 67.8 bits (164), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
+E D V GG +W+N D T+ +CPK C A F Q+Q RSADEPMT FY C + CG
Sbjct: 59 QERDDVFGGPDSWKNADKTKIQCPKNGCNGDEAAFFQMQIRSADEPMTGFYNC--MSCGN 116
Query: 69 RWRE 72
RWRE
Sbjct: 117 RWRE 120
>gi|367021154|ref|XP_003659862.1| hypothetical protein MYCTH_2297359 [Myceliophthora thermophila ATCC
42464]
gi|347007129|gb|AEO54617.1| hypothetical protein MYCTH_2297359 [Myceliophthora thermophila ATCC
42464]
Length = 111
Score = 67.4 bits (163), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE + V GG AW+N + +CP C A F Q+Q RSADEPMTTFYKC + CG
Sbjct: 49 KEKEDVFGGPGAWDNAQKGKVQCPTSNCSGDEAAFFQVQIRSADEPMTTFYKC--MTCGH 106
Query: 69 RWRE 72
RWRE
Sbjct: 107 RWRE 110
>gi|307106217|gb|EFN54463.1| hypothetical protein CHLNCDRAFT_24529 [Chlorella variabilis]
Length = 112
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 44/69 (63%), Gaps = 4/69 (5%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCN 63
+ ++ KE++ V+GG W+N TE +CP C H +AYF + Q RSADEP T FY+C
Sbjct: 45 VPLQRKEVEPVLGGEEEWKNAPRTEARCPSDTCGHLQAYFKEAQIRSADEPATLFYRC-- 102
Query: 64 IKCGFRWRE 72
KCG WRE
Sbjct: 103 AKCGRNWRE 111
>gi|389645943|ref|XP_003720603.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
70-15]
gi|86196830|gb|EAQ71468.1| hypothetical protein MGCH7_ch7g875 [Magnaporthe oryzae 70-15]
gi|351637995|gb|EHA45860.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
70-15]
gi|440472131|gb|ELQ41014.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
Y34]
gi|440479564|gb|ELQ60324.1| DNA-directed RNA polymerase III subunit RPC10 [Magnaporthe oryzae
P131]
Length = 110
Score = 67.0 bits (162), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE + V GG AW+N +CP C+ A F Q+Q RSADEPMT+FYKC
Sbjct: 41 SRKEFARKEREDVFGGPGAWDNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKC 100
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 --MTCGHRWRE 109
>gi|50551345|ref|XP_503146.1| YALI0D22308p [Yarrowia lipolytica]
gi|49649014|emb|CAG81344.1| YALI0D22308p [Yarrowia lipolytica CLIB122]
Length = 110
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTE-EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R ++ K++D V+GG AWENVD +CPKC + AYF +Q RSADEPMT F +C
Sbjct: 43 RKVLEKKKVDSVLGGENAWENVDKDPGSQCPKCSNMGAYFYMLQIRSADEPMTKFCRC-- 100
Query: 64 IKCGFRWRE 72
C +WRE
Sbjct: 101 TACFHQWRE 109
>gi|400596632|gb|EJP64403.1| putative DNA-directed RNA polymerase III subunit C11 [Beauveria
bassiana ARSEF 2860]
Length = 110
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/71 (47%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE + V GG AW+N +CP C+ A F Q+Q RSADEPMT+FYKC
Sbjct: 41 SRRNYERKEKEDVFGGPGAWDNAQKARVQCPAENCDGLEAAFYQVQIRSADEPMTSFYKC 100
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 --MACGHRWRE 109
>gi|238601001|ref|XP_002395292.1| hypothetical protein MPER_04676 [Moniliophthora perniciosa FA553]
gi|215465781|gb|EEB96222.1| hypothetical protein MPER_04676 [Moniliophthora perniciosa FA553]
Length = 92
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTT 57
K+K KE+D V+GG W++ D+T CP+C + +AYF Q+Q RSADEPMTT
Sbjct: 42 KLKRKEVDDVLGGDEMWKHADSTAASCPRCNNGQAYFYQLQIRSADEPMTT 92
>gi|310800075|gb|EFQ34968.1| transcription factor S-II [Glomerella graminicola M1.001]
Length = 110
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 16 VMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
V GG W+N D +CPK C A F Q+Q RSADEPMTTFYKC + CG RWRE
Sbjct: 53 VFGGPGEWDNADKARAQCPKEGCNGEEAAFFQVQIRSADEPMTTFYKC--MTCGNRWRE 109
>gi|116192953|ref|XP_001222289.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88182107|gb|EAQ89575.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 111
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE + V GG AW+N +CP C A F Q+Q RSADEPMTTFYKC + CG
Sbjct: 49 KEKEDVFGGPGAWDNAQKGRVQCPTPDCNGDEAAFFQVQIRSADEPMTTFYKC--MTCGH 106
Query: 69 RWRE 72
RWRE
Sbjct: 107 RWRE 110
>gi|358379290|gb|EHK16970.1| hypothetical protein TRIVIDRAFT_82826 [Trichoderma virens Gv29-8]
Length = 110
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE + V GG AW+N ++ +CP C A F Q+Q RSADEPMT+F+KC
Sbjct: 41 SRRVFERKEREDVFGGPGAWDNAQKSKAQCPNEGCNGEEAAFFQVQIRSADEPMTSFFKC 100
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 --MTCGHRWRE 109
>gi|340516425|gb|EGR46674.1| predicted protein [Trichoderma reesei QM6a]
Length = 110
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE + V GG AW+N ++ +CP C A F Q+Q RSADEPMT+F+KC
Sbjct: 41 SRRVFERKEREDVFGGPGAWDNAQKSKAQCPNEGCNGEEAAFFQVQIRSADEPMTSFFKC 100
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 --MTCGHRWRE 109
>gi|294953345|ref|XP_002787717.1| Surfeit locus protein, putative [Perkinsus marinus ATCC 50983]
gi|239902741|gb|EER19513.1| Surfeit locus protein, putative [Perkinsus marinus ATCC 50983]
Length = 594
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 41/64 (64%), Gaps = 8/64 (12%)
Query: 7 KIKPKEIDH------VMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTF 58
K+ KEI H V+GG AW++V TE CP C+ RAYF Q+Q RSADEPMTTF
Sbjct: 395 KLTQKEILHKEVVEDVLGGPDAWKDVQQTEAVCPADGCDSNRAYFKQMQIRSADEPMTTF 454
Query: 59 YKCC 62
Y+C
Sbjct: 455 YRCV 458
>gi|358398063|gb|EHK47421.1| hypothetical protein TRIATDRAFT_93270 [Trichoderma atroviride IMI
206040]
Length = 110
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE + V GG AW+N ++ +CP C A F Q+Q RSADEPMT+F+KC
Sbjct: 41 SRRVFERKEREDVFGGPGAWDNAQKSKAQCPNEGCTGEEAAFFQVQIRSADEPMTSFFKC 100
Query: 62 CNIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 --MTCGHRWRE 109
>gi|401411477|ref|XP_003885186.1| hypothetical protein NCLIV_055830 [Neospora caninum Liverpool]
gi|325119605|emb|CBZ55158.1| hypothetical protein NCLIV_055830 [Neospora caninum Liverpool]
Length = 106
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+L + PK+ D + CPKC H AYF +IQ RSADEPMT FY CCN
Sbjct: 40 KLPLTPKKADEPLDEHQEASRGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCN- 98
Query: 65 KCGFRWRE 72
C FRWRE
Sbjct: 99 -CRFRWRE 105
>gi|237830299|ref|XP_002364447.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma
gondii ME49]
gi|211962111|gb|EEA97306.1| DNA-directed RNA polymerase III subunit, putative [Toxoplasma
gondii ME49]
gi|221487521|gb|EEE25753.1| RNA polymerase III, putative [Toxoplasma gondii GT1]
gi|221507317|gb|EEE32921.1| RNA polymerase III, putative [Toxoplasma gondii VEG]
Length = 106
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
++ + PK+ D + + CPKC H AYF +IQ RSADEPMT FY CCN
Sbjct: 40 KMPLTPKKADEPLDESQEAARGAKAPASCPKCSHTEAYFYEIQIRSADEPMTAFYCCCN- 98
Query: 65 KCGFRWRE 72
C FRWRE
Sbjct: 99 -CRFRWRE 105
>gi|302419251|ref|XP_003007456.1| DNA-directed RNA polymerase III subunit RPC10 [Verticillium
albo-atrum VaMs.102]
gi|261353107|gb|EEY15535.1| DNA-directed RNA polymerase III subunit RPC10 [Verticillium
albo-atrum VaMs.102]
Length = 110
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 16 VMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
V GG W+N D +CPK C A F Q+Q RSADEPMTTF+KC + CG RWRE
Sbjct: 53 VFGGPGEWDNADKARAQCPKEGCNGDEAAFFQVQIRSADEPMTTFFKC--MACGNRWRE 109
>gi|429855568|gb|ELA30518.1| DNA-directed RNA polymerases iii kda polypeptide [Colletotrichum
gloeosporioides Nara gc5]
Length = 110
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 37/59 (62%), Gaps = 4/59 (6%)
Query: 16 VMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
V GG W+N D +CPK C A F Q+Q RSADEPMTTF+KC + CG RWRE
Sbjct: 53 VFGGPGEWDNADKARAQCPKDGCNGEEAAFFQVQIRSADEPMTTFFKC--MTCGTRWRE 109
>gi|340975908|gb|EGS23023.1| DNA-directed RNA polymerase-like protein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 111
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHP--RAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
+E + V GG AW+N +CP + P A F Q+Q RSADEPMTTFYKC + CG
Sbjct: 49 REKEDVFGGPGAWDNAQKGRVQCPTADCPGDEAAFFQVQIRSADEPMTTFYKC--MTCGH 106
Query: 69 RWRE 72
RWRE
Sbjct: 107 RWRE 110
>gi|320589471|gb|EFX01932.1| RNA polymerase 3 c11 subunit [Grosmannia clavigera kw1407]
Length = 118
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE + V GG AW+N T+ +CP +C+ A F Q+Q RSADEPMT+F+KC + CG
Sbjct: 56 KEKEDVFGGEGAWDNAQKTKVQCPTDRCDGDEAAFFQVQIRSADEPMTSFFKC--MTCGH 113
Query: 69 RWRE 72
WRE
Sbjct: 114 GWRE 117
>gi|346325447|gb|EGX95044.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Cordyceps
militaris CM01]
Length = 110
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE + V GG AW+N +CP C+ A F Q+Q RSADEPMT+FYKC + CG
Sbjct: 48 KEKEDVFGGPGAWDNAQKARVQCPTEACDGHEAAFYQVQIRSADEPMTSFYKC--MVCGH 105
Query: 69 RWRE 72
RWRE
Sbjct: 106 RWRE 109
>gi|322712166|gb|EFZ03739.1| putative DNA-directed RNA polymerase III subunit C11 [Metarhizium
anisopliae ARSEF 23]
Length = 110
Score = 65.1 bits (157), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE + V GG AW+N +CP C+ A F Q+Q RSADEPMT+F+KC + CG
Sbjct: 48 KEKEDVFGGPGAWDNAQKGRAQCPAEGCDGDEAAFFQVQIRSADEPMTSFFKC--MTCGN 105
Query: 69 RWRE 72
RWRE
Sbjct: 106 RWRE 109
>gi|239607032|gb|EEQ84019.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ER-3]
Length = 143
Score = 64.7 bits (156), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKC 61
R ++K KE+ V+GG W+N D+ +CP C+ RAYF Q+Q RSADEPMTTF+K
Sbjct: 43 RTEMKRKEVADVLGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFKA 101
>gi|326436636|gb|EGD82206.1| RNA polymerase III subunit C11 [Salpingoeca sp. ATCC 50818]
Length = 108
Score = 64.7 bits (156), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 46/69 (66%), Gaps = 4/69 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R PK+++ ++G + E + T+ +CP+C+H RA+F ++QTRSADEPMT FY CC
Sbjct: 43 SRKSRNPKQVEDIIGSST--EGLSMTDARCPQCDHARAFFFEMQTRSADEPMTVFY-CCE 99
Query: 64 IKCGFRWRE 72
+C +W E
Sbjct: 100 -ECKHKWSE 107
>gi|302920883|ref|XP_003053168.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256734108|gb|EEU47455.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 126
Score = 64.3 bits (155), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 12 EIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
E + V GG AW+N +CP C A F Q+Q RSADEPMT+FYKC + CG R
Sbjct: 65 EKEDVFGGPGAWDNAQKGRVQCPNDGCNGDEAAFFQVQIRSADEPMTSFYKC--MTCGHR 122
Query: 70 WRE 72
WRE
Sbjct: 123 WRE 125
>gi|261193964|ref|XP_002623387.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|239588401|gb|EEQ71044.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis SLH14081]
gi|327354495|gb|EGE83352.1| DNA-directed RNA polymerase III polypeptide [Ajellomyces
dermatitidis ATCC 18188]
Length = 111
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYK 60
R ++K KE+ V+GG W+N D+ +CP C+ RAYF Q+Q RSADEPMTTF+K
Sbjct: 49 RTEMKRKEVADVLGGKDEWKNADSQGTQCPAEGCDGDRAYFYQLQIRSADEPMTTFFK 106
>gi|440638044|gb|ELR07963.1| hypothetical protein GMDG_02822 [Geomyces destructans 20631-21]
Length = 124
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 40/63 (63%), Gaps = 4/63 (6%)
Query: 12 EIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
E + V GG AW++ E +CP+ C+ A F Q+Q RSADEPMT+FYKC + C R
Sbjct: 63 EREDVFGGPGAWDDAQKAEVQCPREGCDSNEAAFFQVQIRSADEPMTSFYKC--MTCNNR 120
Query: 70 WRE 72
WRE
Sbjct: 121 WRE 123
>gi|428169791|gb|EKX38722.1| DNA-directed RNA polymerase III subunit RPC11 [Guillardia theta
CCMP2712]
Length = 109
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCC-NIKC 66
++ K++D V+G + A ++ CPKC HP+AYF IQ RSADEP T FY+C +C
Sbjct: 42 LEQKKVDDVLGDSFANASMTDVIGGCPKCGHPKAYFFSIQIRSADEPATRFYRCARGAEC 101
Query: 67 GFRWRE 72
+ W+E
Sbjct: 102 TYTWKE 107
>gi|167520890|ref|XP_001744784.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777115|gb|EDQ90733.1| predicted protein [Monosiga brevicollis MX1]
Length = 109
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
D + GG +A E +D TE CPKC H RA ++Q QTRSADEP T FY CC KC +W +
Sbjct: 51 DEIYGGDSAKEMMDMTEADCPKCHHNRASYVQQQTRSADEPSTVFY-CCE-KCNHKWND 107
>gi|46128347|ref|XP_388727.1| hypothetical protein FG08551.1 [Gibberella zeae PH-1]
gi|408394117|gb|EKJ73359.1| hypothetical protein FPSE_06431 [Fusarium pseudograminearum CS3096]
Length = 110
Score = 63.5 bits (153), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Query: 12 EIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
E + V GG AW+N +CP C+ A F Q+Q RSADEPMT+F+KC + CG R
Sbjct: 49 EREDVFGGPGAWDNAQKGPAQCPADGCDGEEAAFFQVQIRSADEPMTSFFKC--MSCGHR 106
Query: 70 WRE 72
WRE
Sbjct: 107 WRE 109
>gi|336275367|ref|XP_003352436.1| hypothetical protein SMAC_01269 [Sordaria macrospora k-hell]
gi|38567336|emb|CAE76624.1| probable DNA-directed RNA polymerase III subunit C11 [Neurospora
crassa]
gi|336465301|gb|EGO53541.1| hypothetical protein NEUTE1DRAFT_133901 [Neurospora tetrasperma
FGSC 2508]
gi|350295598|gb|EGZ76575.1| putative DNA-directed RNA polymerase III subunit C11 [Neurospora
tetrasperma FGSC 2509]
gi|380094324|emb|CCC07703.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 112
Score = 63.2 bits (152), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KE + V GG AW+N + +C C A F Q+Q RSADEPMTTFYKC + CG
Sbjct: 49 KEKEDVFGGPGAWDNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYKC--MTCGH 106
Query: 69 RWRE 72
RWR+
Sbjct: 107 RWRD 110
>gi|242066406|ref|XP_002454492.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
gi|241934323|gb|EES07468.1| hypothetical protein SORBIDRAFT_04g032090 [Sorghum bicolor]
Length = 166
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ ++ KE++ + A ++ T C +C H AYF Q+Q RSADEPMTT Y+CC
Sbjct: 98 KARLVKKEVEPIFSTADEMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKE 157
Query: 65 KCGFRWRE 72
+C WRE
Sbjct: 158 ECQHEWRE 165
>gi|358338299|dbj|GAA56632.1| DNA-directed RNA polymerase III subunit RPC10 [Clonorchis sinensis]
Length = 763
Score = 62.4 bits (150), Expect = 3e-08, Method: Composition-based stats.
Identities = 29/43 (67%), Positives = 32/43 (74%), Gaps = 2/43 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
EEKCPKC H RAYF+Q+QTRSADEP TT Y C +KC W E
Sbjct: 722 EEKCPKCGHNRAYFVQMQTRSADEPSTTKYSC--MKCRHIWTE 762
>gi|67527952|ref|XP_661823.1| hypothetical protein AN4219.2 [Aspergillus nidulans FGSC A4]
gi|40740128|gb|EAA59318.1| hypothetical protein AN4219.2 [Aspergillus nidulans FGSC A4]
gi|259481174|tpe|CBF74458.1| TPA: RNA polymerase III subunit C11, putative (AFU_orthologue;
AFUA_1G06380) [Aspergillus nidulans FGSC A4]
Length = 108
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYK 60
+ +K KE++ V GG A +EN D+ +CP C RAYF Q+Q RSADEPMTTF K
Sbjct: 49 KTPMKQKEVEAVFGGKAEFENADSMATQCPAEGCNGDRAYFFQLQIRSADEPMTTFLK 106
>gi|297745506|emb|CBI40586.3| unnamed protein product [Vitis vinifera]
Length = 175
Score = 62.0 bits (149), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++ KEI+ + +N TT+ CP C +A F Q+QTRSADEPM+TFY C N C
Sbjct: 110 RLVKKEIEPIFSKDDM-KNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENC 168
Query: 67 GFRWRE 72
G +WRE
Sbjct: 169 GRQWRE 174
>gi|212720695|ref|NP_001131695.1| uncharacterized protein LOC100193056 [Zea mays]
gi|194692264|gb|ACF80216.1| unknown [Zea mays]
gi|195653763|gb|ACG46349.1| hypothetical protein [Zea mays]
gi|413923417|gb|AFW63349.1| hypothetical protein ZEAMMB73_646152 [Zea mays]
Length = 110
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ ++ KE++ + A ++ T C +C H AYF Q+Q RSADEPMTT Y+CC
Sbjct: 42 KARLVKKEVEPISSTADEMKSAPKTAVTCQRCNHGEAYFKQMQIRSADEPMTTIYRCCKE 101
Query: 65 KCGFRWRE 72
+C WRE
Sbjct: 102 ECQHEWRE 109
>gi|256077126|ref|XP_002574859.1| DNA-directed RNA polymerase [Schistosoma mansoni]
gi|108861851|gb|ABG21827.1| RNA polymerase III subunit C11-like protein [Schistosoma mansoni]
gi|353229178|emb|CCD75349.1| putative DNA-directed RNA polymerase [Schistosoma mansoni]
Length = 115
Score = 62.0 bits (149), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 34/68 (50%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
RL++ E D V + + T+EKCPKC H RAYF+Q+QTRSADEP T Y C I
Sbjct: 52 RLRL---EEDAVFSVEDEYSSSAQTDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSC--I 106
Query: 65 KCGFRWRE 72
KC W E
Sbjct: 107 KCHHIWTE 114
>gi|357485205|ref|XP_003612890.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355514225|gb|AES95848.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 106
Score = 61.6 bits (148), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K ID ++ +N + CP C HP+A + QTRSADEP T FY+C N KCG +W
Sbjct: 45 KGIDPIISHHEINKNKPKADVPCPNCRHPQASYHMQQTRSADEPATIFYECLNEKCGHKW 104
Query: 71 RE 72
+E
Sbjct: 105 KE 106
>gi|225681739|gb|EEH20023.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03]
Length = 134
Score = 61.6 bits (148), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYK 60
R ++K KE+ V+GG W+N D+ +CP C+ RA+F Q+Q RSADEPMTTF K
Sbjct: 49 RTEMKRKEVADVLGGKDEWKNADSIGTQCPAEGCDGDRAFFYQLQIRSADEPMTTFLK 106
>gi|123478003|ref|XP_001322166.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121905007|gb|EAY09943.1| hypothetical protein TVAG_482170 [Trichomonas vaginalis G3]
Length = 109
Score = 60.8 bits (146), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
+ P ++ ++ A + T+ +C KC H A+F +IQ RSADEP T F+KCC KCG
Sbjct: 46 LNPLDVKALITNDDAMSFQNKTQARCDKCGHNEAFFTEIQIRSADEPATLFFKCC--KCG 103
Query: 68 FRWRE 72
WRE
Sbjct: 104 NTWRE 108
>gi|225470966|ref|XP_002267122.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Vitis vinifera]
Length = 111
Score = 60.8 bits (146), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++ KEI+ + +N TT+ CP C +A F Q+QTRSADEPM+TFY C N C
Sbjct: 46 RLVKKEIEPIFSKDDM-KNGPTTDATCPHCNFGKAVFQQLQTRSADEPMSTFYWCLNENC 104
Query: 67 GFRWRE 72
G +WRE
Sbjct: 105 GRQWRE 110
>gi|66362552|ref|XP_628242.1| RNA polymerase III subunit C11 [Cryptosporidium parvum Iowa II]
gi|46229854|gb|EAK90672.1| RNA polymerase III subunit C11 [Cryptosporidium parvum Iowa II]
Length = 62
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC AYF Q+Q RSADEPMT+FY C +KC F+W+E
Sbjct: 24 CPKCSFSEAYFFQLQIRSADEPMTSFYTC--VKCDFKWKE 61
>gi|449017739|dbj|BAM81141.1| RNA polymerase III subunit [Cyanidioschyzon merolae strain 10D]
Length = 288
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 47/64 (73%), Gaps = 5/64 (7%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
+P+E+ V+G +A + +T++ +C +C +A F Q+QTRSADEPMTTFY+C ++CG
Sbjct: 230 QPEELV-VLGAESAGQ--ETSQVRCERCSARKASFYQLQTRSADEPMTTFYRC--LECGA 284
Query: 69 RWRE 72
+WRE
Sbjct: 285 QWRE 288
>gi|388510306|gb|AFK43219.1| unknown [Lotus japonicus]
Length = 111
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/62 (50%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KEID V+ +N TTE +CP C H +A + ++Q RSADEP T FY C N KC +W
Sbjct: 50 KEIDPVIS-YDDMKNGPTTEVRCPNCSHDKAAYTEMQIRSADEPATIFYWCLNEKCRHQW 108
Query: 71 RE 72
RE
Sbjct: 109 RE 110
>gi|224120828|ref|XP_002318427.1| predicted protein [Populus trichocarpa]
gi|222859100|gb|EEE96647.1| predicted protein [Populus trichocarpa]
Length = 112
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 36/66 (54%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K+ KEI+ + T+ CP C RA F QIQ RSADEP TTFY C N KC
Sbjct: 46 KLAKKEIEPIFTLEDMKTGGAETDATCPHCNFGRACFQQIQIRSADEPATTFYFCLNEKC 105
Query: 67 GFRWRE 72
G WRE
Sbjct: 106 GRMWRE 111
>gi|449446776|ref|XP_004141147.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cucumis sativus]
Length = 111
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 42/75 (56%), Gaps = 7/75 (9%)
Query: 4 GRLKIK------PKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTT 57
R+KIK KE++ ++ +N TE CP C +A F+QIQ RSADEP TT
Sbjct: 37 NRVKIKRKQHLVKKELEPIISDDD-MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATT 95
Query: 58 FYKCCNIKCGFRWRE 72
FYKC N C WRE
Sbjct: 96 FYKCMNENCRQNWRE 110
>gi|378728029|gb|EHY54488.1| DNA-directed RNA polymerase III subunit C11 [Exophiala dermatitidis
NIH/UT8656]
Length = 117
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 4/70 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R +K K+ D +MG + V+ CP KC+ +AYF Q+QTRSADEP T+F+KC
Sbjct: 49 RTYMKKKQKDDIMGEDESDLPVNEVPGGCPNEKCDSNKAYFYQLQTRSADEPPTSFFKC- 107
Query: 63 NIKCGFRWRE 72
++CG +WRE
Sbjct: 108 -VECGKQWRE 116
>gi|357512455|ref|XP_003626516.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
gi|355501531|gb|AES82734.1| DNA-directed RNA polymerase subunit [Medicago truncatula]
Length = 108
Score = 59.3 bits (142), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 36/62 (58%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K ID ++ +N + CP C HP+A + QTRSADEP T FYKC N KC +W
Sbjct: 46 KGIDPIISHDEINKNKPKADIPCPNCRHPQASYHMEQTRSADEPATIFYKCMNQKCEHQW 105
Query: 71 RE 72
+E
Sbjct: 106 KE 107
>gi|62467577|gb|AAX83938.1| Rpc11p [Saccharomyces cerevisiae]
Length = 96
Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%), Gaps = 5/56 (8%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTT 57
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTT
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTT 96
>gi|449489530|ref|XP_004158339.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Cucumis sativus]
Length = 112
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 30/62 (48%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE++ ++ +N TE CP C +A F+QIQ RSADEP TTFYKC N C W
Sbjct: 51 KELEPIISDDD-MKNAAQTEATCPNCAFGKAAFIQIQLRSADEPATTFYKCMNENCRQNW 109
Query: 71 RE 72
RE
Sbjct: 110 RE 111
>gi|56756933|gb|AAW26638.1| SJCHGC03725 protein [Schistosoma japonicum]
gi|226487380|emb|CAX74560.1| DNA-directed RNA polymerase III subunit C11 [Schistosoma japonicum]
Length = 115
Score = 58.5 bits (140), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 40/68 (58%), Gaps = 5/68 (7%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
RL++ E D V + + +EKCPKC H RAYF+Q+QTRSADEP T Y C +
Sbjct: 52 RLRL---EEDAVFSVEDEYSSSAQIDEKCPKCSHTRAYFVQMQTRSADEPSTIKYSC--M 106
Query: 65 KCGFRWRE 72
KC W E
Sbjct: 107 KCHHIWTE 114
>gi|171684021|ref|XP_001906952.1| hypothetical protein [Podospora anserina S mat+]
gi|170941971|emb|CAP67623.1| unnamed protein product [Podospora anserina S mat+]
Length = 111
Score = 58.5 bits (140), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 32/69 (46%), Positives = 41/69 (59%), Gaps = 5/69 (7%)
Query: 7 KIKPK-EIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
K+ PK E + + GG AW N + +C +C A F Q+Q RSADEPMTTFY+C
Sbjct: 44 KVFPKVEKEDLFGGPDAWANAQKQKVQCSSAECSGGEAAFFQVQIRSADEPMTTFYRC-- 101
Query: 64 IKCGFRWRE 72
+ CG WRE
Sbjct: 102 LTCGKNWRE 110
>gi|307104138|gb|EFN52393.1| hypothetical protein CHLNCDRAFT_138851 [Chlorella variabilis]
Length = 92
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ K K+I+ V+GG A W + TE +C +C H A++ Q+Q RSADEP TT+++C
Sbjct: 26 MSQKTKKIEPVLGGEAEWRSAPRTEHTRCSECGHNVAFYQQVQNRSADEPATTYFRC--T 83
Query: 65 KCGFRWRE 72
+C W+E
Sbjct: 84 RCAKVWQE 91
>gi|300708714|ref|XP_002996531.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
gi|239605840|gb|EEQ82860.1| hypothetical protein NCER_100370 [Nosema ceranae BRL01]
Length = 105
Score = 58.2 bits (139), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 3/60 (5%)
Query: 13 IDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+D V+G ++ T E+KC KC+ +A FM++QTRSADEPMT FY+C + C W+E
Sbjct: 48 VDKVLG-EDEYKYASTCEKKCIKCDSNKALFMELQTRSADEPMTIFYEC--VLCKTNWKE 104
>gi|326634546|pdb|3QT1|I Chain I, Rna Polymerase Ii Variant Containing A Chimeric Rpb9-C11
Subunit
Length = 133
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
++ +CPKC F Q+Q RSADEPMTTFYKC N CG RW+E
Sbjct: 91 SDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVN--CGHRWKE 132
>gi|356567921|ref|XP_003552163.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC10-like
[Glycine max]
Length = 111
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 31/48 (64%)
Query: 25 NVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
N +TE CP C H +A F + QTRSADEP T FYKC N C +WRE
Sbjct: 63 NAPSTEATCPFCGHGKAAFKEFQTRSADEPATLFYKCLNNDCKKQWRE 110
>gi|255565039|ref|XP_002523512.1| DNA-directed RNA polymerase III, putative [Ricinus communis]
gi|223537219|gb|EEF38851.1| DNA-directed RNA polymerase III, putative [Ricinus communis]
Length = 112
Score = 57.4 bits (137), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 38/75 (50%), Gaps = 6/75 (8%)
Query: 4 GRLKIK------PKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTT 57
R+KIK KEI+ V + TE CP C RA F +Q RSADEP TT
Sbjct: 37 SRVKIKRKQQLIKKEIEPVFTLDDMMKGGSETEATCPHCNFGRARFQSLQIRSADEPATT 96
Query: 58 FYKCCNIKCGFRWRE 72
FY C N KC WRE
Sbjct: 97 FYFCLNEKCSRVWRE 111
>gi|390371152|dbj|GAB65033.1| transcription factor [Plasmodium cynomolgi strain B]
Length = 106
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC H AYF +Q RSADEP T FY C IKC W+E
Sbjct: 60 KNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTIFYIC--IKCNHHWKE 106
>gi|68073273|ref|XP_678551.1| transcription factor [Plasmodium berghei strain ANKA]
gi|56499055|emb|CAI00136.1| transcription factor, putative [Plasmodium berghei]
Length = 106
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC H AYF +Q RSADEP T FY C N C + W+E
Sbjct: 60 KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVN--CNYHWKE 106
>gi|70935719|ref|XP_738907.1| transcription factor [Plasmodium chabaudi chabaudi]
gi|70948038|ref|XP_743577.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56515491|emb|CAH84203.1| transcription factor, putative [Plasmodium chabaudi chabaudi]
gi|56523140|emb|CAH77369.1| hypothetical protein PC000189.02.0 [Plasmodium chabaudi chabaudi]
Length = 106
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC H AYF +Q RSADEP T FY C N C + W+E
Sbjct: 60 KNMSKTQAICPKCTHDEAYFYSLQIRSADEPSTLFYICVN--CNYHWKE 106
>gi|346976440|gb|EGY19892.1| DNA-directed RNA polymerase III subunit RPC10 [Verticillium dahliae
VdLs.17]
Length = 110
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 16 VMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
V GG W+N D +CPK C A F Q+Q RSADEPMTTF+K N+
Sbjct: 53 VFGGPGEWDNADKARAQCPKEGCNGDEAAFFQVQIRSADEPMTTFFKVGNV 103
>gi|209881247|ref|XP_002142062.1| DNA-directed RNA polymerase III subunit RPC10 [Cryptosporidium
muris RN66]
gi|209557668|gb|EEA07713.1| DNA-directed RNA polymerase III subunit RPC10, putative
[Cryptosporidium muris RN66]
Length = 106
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 39/64 (60%), Gaps = 6/64 (9%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KP+E M A+ + + CPKC + AYF Q+Q RSADEPMT+FY C +KC
Sbjct: 48 KPEEAQGDMNEIASAKVMAV----CPKCSNTEAYFFQLQIRSADEPMTSFYTC--VKCEH 101
Query: 69 RWRE 72
+W+E
Sbjct: 102 KWKE 105
>gi|308162510|gb|EFO64898.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
P15]
Length = 103
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 15 HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
H M EN +E CPKC H +AY+ IQ RSADE T F++CCN CG ++R
Sbjct: 46 HYMTQEHMTENRPVIDETCPKCHHGQAYYSSIQMRSADEGQTIFFECCN--CGHKYR 100
>gi|221053187|ref|XP_002257968.1| transcription factor [Plasmodium knowlesi strain H]
gi|193807800|emb|CAQ38505.1| transcription factor, putative [Plasmodium knowlesi strain H]
Length = 106
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC H AYF +Q RSADEP T FY C IKC W+E
Sbjct: 60 KNMSKTQAVCPKCTHDEAYFYSMQIRSADEPSTLFYIC--IKCNHHWKE 106
>gi|156093906|ref|XP_001612991.1| transcription factor [Plasmodium vivax Sal-1]
gi|148801865|gb|EDL43264.1| transcription factor, putative [Plasmodium vivax]
Length = 106
Score = 56.2 bits (134), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC H AYF +Q RSADEP T FY C +KC W+E
Sbjct: 60 KNMSKTQAVCPKCTHDEAYFYSLQIRSADEPSTLFYIC--VKCNHHWKE 106
>gi|357631745|gb|EHJ79214.1| ischemia/reperfusion inducible protein [Danaus plexippus]
Length = 296
Score = 56.2 bits (134), Expect = 3e-06, Method: Composition-based stats.
Identities = 23/56 (41%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K KE+D++MGGAAAWENVD+T+ CPKC + R + + + + M + + C ++
Sbjct: 34 KLKELDYIMGGAAAWENVDSTDAVCPKCAYVR--YKSVMSTMKIDKMASIFPCDDV 87
>gi|48477966|ref|YP_023672.1| DNA-directed RNA polymerase subunit M [Picrophilus torridus DSM
9790]
gi|48430614|gb|AAT43479.1| DNA-directed RNA polymerase subunit M [Picrophilus torridus DSM
9790]
Length = 101
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/44 (59%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+E CPKC H AY++ QTRSADEP T FY C CG+RWRE
Sbjct: 59 SEAVCPKCHHVGAYYLLKQTRSADEPETKFYTC--AACGYRWRE 100
>gi|351725003|ref|NP_001238101.1| uncharacterized protein LOC100527062 [Glycine max]
gi|255631470|gb|ACU16102.1| unknown [Glycine max]
Length = 111
Score = 55.8 bits (133), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++ KEI+ + N +TE CP C H +A F + QTRSAD P T FYKC N +C
Sbjct: 46 RLVSKEIEPIFS-EDDMTNAASTEATCPFCGHGKAAFKEFQTRSADGPATLFYKCLNNEC 104
Query: 67 GFRWRE 72
+WRE
Sbjct: 105 KKQWRE 110
>gi|170290660|ref|YP_001737476.1| DNA-directed RNA polymerase subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
gi|170174740|gb|ACB07793.1| DNA-directed RNA polymerase, subunit M [Candidatus Korarchaeum
cryptofilum OPF8]
Length = 108
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K+ + D ++ + + E +CPKC + +AYF +QTR+ADEP T YKC KC
Sbjct: 43 KVTSESGDVIIEEESEKISAPVVEARCPKCGNDKAYFQIVQTRAADEPPTRIYKC--TKC 100
Query: 67 GFRWRE 72
G+ WRE
Sbjct: 101 GYSWRE 106
>gi|403223885|dbj|BAM42015.1| RNA polymerase small subunit [Theileria orientalis strain Shintoku]
Length = 108
Score = 55.5 bits (132), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K++D +E+ CP C + AYFM IQTRSADEPMT F+ C C RW
Sbjct: 49 KDVDKTPLSTNEFEHSPKIPAVCPYCNNNEAYFMSIQTRSADEPMTQFFVC--TSCTKRW 106
Query: 71 RE 72
RE
Sbjct: 107 RE 108
>gi|296241788|ref|YP_003649275.1| DNA-directed RNA polymerase subunit M [Thermosphaera aggregans DSM
11486]
gi|296094372|gb|ADG90323.1| DNA-directed RNA polymerase, subunit M [Thermosphaera aggregans DSM
11486]
Length = 114
Score = 55.5 bits (132), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
R++ +E V+G + + E CPKC + AY+ IQTR+ADEP T FYKC
Sbjct: 46 SRIEHSTREKTIVVGDVDTSKLPVSKEVTCPKCGNHEAYYWMIQTRAADEPPTRFYKC-- 103
Query: 64 IKCGFRWRE 72
+KCG WRE
Sbjct: 104 VKCGHTWRE 112
>gi|297848404|ref|XP_002892083.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
gi|297337925|gb|EFH68342.1| hypothetical protein ARALYDRAFT_311313 [Arabidopsis lyrata subsp.
lyrata]
Length = 106
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TE CP+C H +AYF +Q RSADEP + FY+C +KC F WRE
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIRSADEPESRFYRC--LKCDFTWRE 105
>gi|124800991|ref|XP_001349576.1| transcription factor, putative [Plasmodium falciparum 3D7]
gi|3845145|gb|AAC71847.1| transcription factor, putative [Plasmodium falciparum 3D7]
Length = 106
Score = 55.1 bits (131), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC + AYF +Q RSADEP T FY C +KC + W+E
Sbjct: 60 KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYIC--VKCNYHWKE 106
>gi|66816447|ref|XP_642233.1| RNA polymerase II elongation factor [Dictyostelium discoideum AX4]
gi|74856708|sp|Q54YG9.1|TCEA1_DICDI RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor tf2s
gi|60470313|gb|EAL68293.1| RNA polymerase II elongation factor [Dictyostelium discoideum AX4]
Length = 319
Score = 55.1 bits (131), Expect = 6e-06, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + +C KC+ + + Q+QTRSADEP TTF KCC CG RWR
Sbjct: 274 TDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRWR 317
>gi|15223344|ref|NP_171629.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
gi|9665148|gb|AAF97332.1|AC023628_13 Similar to DNA-directed RNA polymerase subunit M [Arabidopsis
thaliana]
gi|30793865|gb|AAP40385.1| unknown protein [Arabidopsis thaliana]
gi|30794074|gb|AAP40481.1| unknown protein [Arabidopsis thaliana]
gi|110738907|dbj|BAF01375.1| hypothetical protein [Arabidopsis thaliana]
gi|332189133|gb|AEE27254.1| DNA-directed RNA polymerase III subunit C11 [Arabidopsis thaliana]
Length = 106
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TE CP+C H +AYF +Q RSADEP + FY+C +KC F WRE
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIRSADEPESRFYRC--LKCEFTWRE 105
>gi|390937792|ref|YP_006401530.1| transcription termination factor Tfs [Desulfurococcus fermentans
DSM 16532]
gi|390190899|gb|AFL65955.1| transcription termination factor Tfs [Desulfurococcus fermentans
DSM 16532]
Length = 114
Score = 54.7 bits (130), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ KP E V+ T E CPKC AY+ IQTR+ADEP T F+KC
Sbjct: 47 RIDHKPGEKTLVLESGGEANLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKC--T 104
Query: 65 KCGFRWRE 72
KCG+ WRE
Sbjct: 105 KCGYTWRE 112
>gi|15235876|ref|NP_192535.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
gi|4309697|gb|AAD15481.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|7267434|emb|CAB77946.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|18253033|gb|AAL62443.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|23198220|gb|AAN15637.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
gi|332657185|gb|AEE82585.1| DNA-directed RNA polymerase, subunit M [Arabidopsis thaliana]
Length = 106
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TE CP+C H +AYF +Q RSADEP + FY+C +KC F WRE
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIRSADEPESRFYRC--LKCEFTWRE 105
>gi|330804516|ref|XP_003290240.1| hypothetical protein DICPUDRAFT_37036 [Dictyostelium purpureum]
gi|325079657|gb|EGC33247.1| hypothetical protein DICPUDRAFT_37036 [Dictyostelium purpureum]
Length = 109
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 33/57 (57%)
Query: 16 VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
V GG AW++ D E +CP C H RA + IQ A EP T+F +C N C +W++
Sbjct: 52 VFGGEEAWKSADQVEVECPVCHHKRAGIIDIQVSLAPEPKTSFLRCRNPSCEHQWQK 108
>gi|218884729|ref|YP_002429111.1| DNA-directed RNA polymerase subunit M, partial [Desulfurococcus
kamchatkensis 1221n]
gi|218766345|gb|ACL11744.1| DNA-directed RNA polymerase subunit M [Desulfurococcus
kamchatkensis 1221n]
Length = 75
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ KP E V+ T E CPKC AY+ IQTR+ADEP T F+KC
Sbjct: 8 RIDHKPGEKTLVLESGGEVNLPVTREVTCPKCGWHEAYYWVIQTRAADEPPTRFFKC--T 65
Query: 65 KCGFRWRE 72
KCG+ WRE
Sbjct: 66 KCGYTWRE 73
>gi|21553769|gb|AAM62862.1| putative DNA-directed RNA polymerase subunit [Arabidopsis thaliana]
Length = 106
Score = 54.7 bits (130), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 44/73 (60%), Gaps = 7/73 (9%)
Query: 5 RLKIKPKE--IDHVMGGAAAWENVDT---TEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
R++IK K+ + + +++ T TE CP+C H +AYF +Q RSADEP + FY
Sbjct: 35 RVEIKKKQLLVKKSIEPVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 60 KCCNIKCGFRWRE 72
+C +KC F WRE
Sbjct: 95 RC--LKCEFTWRE 105
>gi|367043178|ref|XP_003651969.1| hypothetical protein THITE_2112787 [Thielavia terrestris NRRL
8126]
gi|346999231|gb|AEO65633.1| hypothetical protein THITE_2112787 [Thielavia terrestris NRRL
8126]
Length = 107
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYK 60
+E + V GG AW+N +CP C A F Q+Q RSADEPMTTFYK
Sbjct: 35 REKEDVFGGPGAWDNAQKGRVQCPTADCSGVEAAFFQVQIRSADEPMTTFYK 86
>gi|124028485|ref|YP_001013805.1| DNA-directed RNA polymerase subunit M [Hyperthermus butylicus DSM
5456]
gi|123979179|gb|ABM81460.1| DNA-directed RNA polymerase subunit M [Hyperthermus butylicus DSM
5456]
Length = 114
Score = 54.3 bits (129), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 9/76 (11%)
Query: 4 GRLKIKPKEIDH-------VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMT 56
+L + KEI H V+ W+ + T+ CP+C + AY +QTR ADEP T
Sbjct: 39 AQLAVLRKEIKHSEKERIVVVDPNVNWKAMPKTKAVCPRCGYHEAYVWVVQTRRADEPPT 98
Query: 57 TFYKCCNIKCGFRWRE 72
F+KC + CG+ WRE
Sbjct: 99 RFFKC--VSCGYVWRE 112
>gi|393234028|gb|EJD41594.1| hypothetical protein AURDEDRAFT_138547 [Auricularia delicata
TFB-10046 SS5]
Length = 97
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 35/56 (62%), Gaps = 9/56 (16%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK 60
R +IK KE D ++G + CPKCEH +A+F Q+Q RSADEPMT FYK
Sbjct: 40 RTRIKTKEPDVMLGEESL---------PCPKCEHNKAFFNQMQIRSADEPMTIFYK 86
>gi|170111316|ref|XP_001886862.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638220|gb|EDR02499.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 294
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AAA + +T +C +C+ + + Q QTRSADEPMTTF C N CG RW+
Sbjct: 243 AAAEQQAETDAFQCSRCKQRKCRYRQAQTRSADEPMTTFVTCTN--CGNRWK 292
>gi|71749298|ref|XP_827988.1| RNA polymerase III C11 subunit [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70833372|gb|EAN78876.1| RNA polymerase III C11 subunit, putative [Trypanosoma brucei brucei
strain 927/4 GUTat10.1]
gi|261333746|emb|CBH16741.1| DNA-directed RNA polymerase III, putative [Trypanosoma brucei
gambiense DAL972]
Length = 126
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE + V GG E++C + RA+++QIQ RSADEP TTF+KC +KCGF+W
Sbjct: 69 KEEEEVDGGQVITVRCQNDEKQC---DGDRAHYVQIQMRSADEPATTFFKC--LKCGFQW 123
Query: 71 RE 72
++
Sbjct: 124 KQ 125
>gi|156084192|ref|XP_001609579.1| transcription factor S-II protein [Babesia bovis T2Bo]
gi|154796831|gb|EDO06011.1| transcription factor S-II protein, putative [Babesia bovis]
Length = 109
Score = 53.9 bits (128), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KEI +E+ CP C + AYFM IQTRSADEPMT F+ C C RW
Sbjct: 50 KEIPRSPHSVNEFEHAPKIIAVCPSCHNKEAYFMSIQTRSADEPMTQFFVC--TACRHRW 107
Query: 71 RE 72
+E
Sbjct: 108 KE 109
>gi|330796078|ref|XP_003286096.1| hypothetical protein DICPUDRAFT_77009 [Dictyostelium purpureum]
gi|325083915|gb|EGC37355.1| hypothetical protein DICPUDRAFT_77009 [Dictyostelium purpureum]
Length = 310
Score = 53.9 bits (128), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 31/44 (70%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + +C KC+ R + Q+QTRSADEPMTTF +C N CG RW+
Sbjct: 267 TDQFQCGKCKQRRCTYFQMQTRSADEPMTTFVRCIN--CGNRWK 308
>gi|449299188|gb|EMC95202.1| hypothetical protein BAUCODRAFT_530419 [Baudoinia compniacensis
UAMH 10762]
Length = 311
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E +T C KC+ R + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 261 AQEEKAISTTMTCNKCKQSRVAYTQAQTRSADEPMTTFCECTN--CGNRWK 309
>gi|402469030|gb|EJW04098.1| transcription elongation factor S-II [Edhazardia aedis USNM 41457]
Length = 305
Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
D +M DTT KC +C+ + + Q+QTRSADEPMT + CC CG +W+
Sbjct: 249 DQLMDSQLPKLQADTTMFKCSRCKQSKTTYYQLQTRSADEPMTNYITCC--VCGHKWK 304
>gi|429962884|gb|ELA42428.1| transcription elongation factor S-II [Vittaforma corneae ATCC
50505]
Length = 274
Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ ++ A DT +C KC+ + + Q+QTRS DEPMTTF C N CG RW+
Sbjct: 218 ESLLASQVASAAADTDMFQCSKCKQKKCTYSQLQTRSCDEPMTTFVTCTN--CGHRWK 273
>gi|328767604|gb|EGF77653.1| hypothetical protein BATDEDRAFT_91451 [Batrachochytrium
dendrobatidis JAM81]
Length = 296
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+AA + +T +C +C+ +A + Q+QTRSADEPMTTF CC+ CG +W+
Sbjct: 245 SAANQEAETDMFRCGRCKQRKATYYQMQTRSADEPMTTFVTCCH--CGNKWK 294
>gi|261402507|ref|YP_003246731.1| transcription termination factor Tfs [Methanocaldococcus vulcanius
M7]
gi|261369500|gb|ACX72249.1| transcription termination factor Tfs [Methanocaldococcus vulcanius
M7]
Length = 107
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
++PK+ + + E + TT +CPKC H AY+ QTR ADEP T FYKC KCG
Sbjct: 43 LEPKKKEITVIEDEGLETLPTTRIECPKCGHTEAYWWLQQTRCADEPETRFYKC--KKCG 100
Query: 68 FRWRE 72
WRE
Sbjct: 101 HTWRE 105
>gi|212527774|ref|XP_002144044.1| RNA polymerase III subunit C11, putative [Talaromyces marneffei
ATCC 18224]
gi|210073442|gb|EEA27529.1| RNA polymerase III subunit C11, putative [Talaromyces marneffei
ATCC 18224]
Length = 116
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+K KE++ V ++N D +CP C AYF Q+Q RSADEPMTTF +C
Sbjct: 52 LKQKEVEVVFNDEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRC--TT 109
Query: 66 CGFRWRE 72
C WR+
Sbjct: 110 CAKTWRD 116
>gi|242784626|ref|XP_002480425.1| RNA polymerase III subunit C11, putative [Talaromyces stipitatus
ATCC 10500]
gi|218720572|gb|EED19991.1| RNA polymerase III subunit C11, putative [Talaromyces stipitatus
ATCC 10500]
Length = 116
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+K KE++ V ++N D +CP C AYF Q+Q RSADEPMTTF +C
Sbjct: 52 LKQKEVEVVFNDEEMFKNADKLPVQCPSDTCNGEYAYFYQLQIRSADEPMTTFLRC--TT 109
Query: 66 CGFRWRE 72
C WR+
Sbjct: 110 CAKTWRD 116
>gi|253744550|gb|EET00750.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia
intestinalis ATCC 50581]
Length = 103
Score = 53.5 bits (127), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 15 HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
H + E+ +E+CPKC H +AY+ +Q RSADE T F++CCN CG ++R
Sbjct: 46 HYIVHEGVTESRPIIDEECPKCHHGQAYYTSMQMRSADEGQTIFFECCN--CGHKYR 100
>gi|328872944|gb|EGG21311.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 99
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDH-VMGGAAAWENVDTTEEKCPKCE-HPRAYFMQIQTRSADEPMTTFYKC 61
++ + K+ID V GG AW N + +CP C+ RA+ M+IQ ADEP T +YKC
Sbjct: 31 SKVPLVRKQIDSDVFGGDEAWNNSQQVDIECPTCKVRRRAHLMEIQVYPADEPKTAYYKC 90
Query: 62 CNIKCGFRWRE 72
C RWR
Sbjct: 91 --TYCATRWRN 99
>gi|281207161|gb|EFA81344.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 108
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 12 EIDHVMGGAAAWENVDTTEEKCPKC-EHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+D V GG AW + T+ CP C E R Y M+IQ DEP TT+YKC CG RW
Sbjct: 49 EVD-VFGGDDAWLDSQQTDAHCPTCKERRRVYLMEIQVYPIDEPKTTYYKC--TICGGRW 105
Query: 71 R 71
+
Sbjct: 106 K 106
>gi|448083875|ref|XP_004195463.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
gi|359376885|emb|CCE85268.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
Length = 296
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H R + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 258 CGKCKHKRVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 294
>gi|378733301|gb|EHY59760.1| transcription elongation factor S-II [Exophiala dermatitidis
NIH/UT8656]
Length = 306
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+KI + +++ M A E +T +C KC + + Q QTRSADEPMTTF +C N
Sbjct: 243 IKIAKENMNNAM--VAQEEKSVSTSLECGKCHQKKVSYSQAQTRSADEPMTTFCECLN-- 298
Query: 66 CGFRWR 71
CG RW+
Sbjct: 299 CGNRWK 304
>gi|315425737|dbj|BAJ47392.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315425785|dbj|BAJ47439.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|315427642|dbj|BAJ49239.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
gi|343484624|dbj|BAJ50278.1| DNA-directed RNA polymerase subunit M [Candidatus Caldiarchaeum
subterraneum]
Length = 110
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T++ CP+C H A + +QTRSADEPMT F++C +KCG WRE
Sbjct: 66 TSDVVCPQCGHNEAKWWTVQTRSADEPMTQFFRC--VKCGHTWRE 108
>gi|448079285|ref|XP_004194362.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
gi|359375784|emb|CCE86366.1| Piso0_004850 [Millerozyma farinosa CBS 7064]
Length = 296
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H R + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 258 CGKCKHKRVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 294
>gi|392584823|gb|EIW74165.1| transcription elongation factor [Coniophora puteana RWD-64-598 SS2]
Length = 294
Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AAA + +T +C +C+ + + Q QTRSADEPMTTF C N CG RW+
Sbjct: 243 AAAEQEAETDGFQCGRCKQRKCRYRQAQTRSADEPMTTFVTCTN--CGNRWK 292
>gi|322799183|gb|EFZ20613.1| hypothetical protein SINV_03971 [Solenopsis invicta]
Length = 136
Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 75 ELTHIVADVISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRW 134
Query: 71 RE 72
E
Sbjct: 135 TE 136
>gi|169806152|ref|XP_001827821.1| transcription elongation factor S-II [Enterocytozoon bieneusi H348]
gi|161779269|gb|EDQ31292.1| transcription elongation factor S-II [Enterocytozoon bieneusi H348]
Length = 180
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
Query: 1 MRCGRLKIKPKEI--DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTF 58
M+ + K++ K+I D + A +TT KC +C+ + + Q+QTRS DEPMTTF
Sbjct: 109 MKSEKQKLEEKKIVEDSINSSRQACTEAETTMFKCGRCQKNQCTYYQLQTRSCDEPMTTF 168
Query: 59 YKCCNIKCGFRWR 71
+C N CG W+
Sbjct: 169 VRCTN--CGHNWK 179
>gi|71023611|ref|XP_762035.1| hypothetical protein UM05888.1 [Ustilago maydis 521]
gi|46101600|gb|EAK86833.1| hypothetical protein UM05888.1 [Ustilago maydis 521]
Length = 315
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 19 GAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
GAAA E +T +C +C+ + + Q+QTRSADEPMTTF C N C +W+
Sbjct: 264 GAAAQE-AETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTN--CNHKWK 313
>gi|85114623|ref|XP_964731.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Neurospora
crassa OR74A]
gi|28926523|gb|EAA35495.1| DNA-directed RNA polymerases III 12.5 kDa polypeptide [Neurospora
crassa OR74A]
Length = 111
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPK--CEHPRAYFMQIQTRSADEPMTTFYK 60
KE + V GG AW+N + +C C A F Q+Q RSADEPMTTFYK
Sbjct: 49 KEKEDVFGGPGAWDNAQKGKVQCDSGTCNGNEAAFFQVQIRSADEPMTTFYK 100
>gi|71408018|ref|XP_806438.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70870187|gb|EAN84587.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 122
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 1 MRCGRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK 60
++ +K K +E+D GG E+ C + RA+++QIQ RSADEP TTF+K
Sbjct: 58 VKANGIKTKNEEVD---GGQLITVRCQNDEKFC---DGNRAHYVQIQMRSADEPATTFFK 111
Query: 61 CCNIKCGFRWRE 72
C +KCGF+W++
Sbjct: 112 C--LKCGFQWKQ 121
>gi|388854758|emb|CCF51651.1| related to transcription elongation factor TFIIS [Ustilago hordei]
Length = 317
Score = 52.8 bits (125), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 19 GAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
GAAA E +T +C +C+ + + Q+QTRSADEPMTTF C N C +W+
Sbjct: 266 GAAAQE-AETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTN--CNHKWK 315
>gi|57640468|ref|YP_182946.1| DNA-directed RNA polymerase subunit M [Thermococcus kodakarensis
KOD1]
gi|57158792|dbj|BAD84722.1| archaeal transcription factor S [Thermococcus kodakarensis KOD1]
Length = 110
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ K + ++ + + TT+ CPKC + AY+ ++QTR+ DEP T FYKC KC
Sbjct: 45 KVEHKPDEEIIVVEQDLKTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYTWR 107
>gi|126459602|ref|YP_001055880.1| DNA-directed RNA polymerase subunit M [Pyrobaculum calidifontis JCM
11548]
gi|126249323|gb|ABO08414.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum calidifontis
JCM 11548]
Length = 124
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H AYF QTR+ADEP T FYKC KCG WRE
Sbjct: 85 CPKCGHDEAYFWVQQTRAADEPPTRFYKC--TKCGHVWRE 122
>gi|347522734|ref|YP_004780304.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
gi|343459616|gb|AEM38052.1| transcription termination factor Tfs [Pyrolobus fumarii 1A]
Length = 114
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +CP+C H AY+ +QTR ADEP T FYKC KCG WRE
Sbjct: 71 TRIQCPRCSHDEAYYWVVQTRRADEPPTRFYKC--TKCGHVWRE 112
>gi|307596161|ref|YP_003902478.1| transcription termination factor Tfs [Vulcanisaeta distributa DSM
14429]
gi|307551362|gb|ADN51427.1| transcription termination factor Tfs [Vulcanisaeta distributa DSM
14429]
Length = 112
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
E + + CPKC + AYF QTR+ADEP T FYKC ++CG+ WRE
Sbjct: 64 EALPKVRKTCPKCGYEEAYFWVQQTRAADEPPTRFYKC--VRCGYVWRE 110
>gi|343427400|emb|CBQ70927.1| related to transcription elongation factor TFIIS [Sporisorium
reilianum SRZ2]
Length = 319
Score = 52.4 bits (124), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 19 GAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
GAAA E +T +C +C+ + + Q+QTRSADEPMTTF C N C +W+
Sbjct: 268 GAAAQE-AETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTN--CNHKWK 317
>gi|352681801|ref|YP_004892325.1| transcription elongation factor TFS/RNA polymerase subunit M
[Thermoproteus tenax Kra 1]
gi|350274600|emb|CCC81245.1| archaeal transcription elongation factor TFS/RNA polymerase subunit
M [Thermoproteus tenax Kra 1]
Length = 109
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ ++ A+E + T+ CPKC + AY QTR+ADEP T FY+C KCG+ WRE
Sbjct: 51 EALLVADKAFETLPKTKVVCPKCGNEEAYVWMQQTRAADEPPTRFYRC--TKCGYTWRE 107
>gi|429962736|gb|ELA42280.1| transcription factor S [Vittaforma corneae ATCC 50505]
Length = 104
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
K I+ V+ + + + KC KC + A F++IQTRSADEPMT FY+C KC W
Sbjct: 45 KIIEKVLRKEQDLKYANKCQIKCQKCSNGEALFVEIQTRSADEPMTIFYQC--TKCHHNW 102
Query: 71 RE 72
+E
Sbjct: 103 KE 104
>gi|332025400|gb|EGI65567.1| DNA-directed RNA polymerase II subunit RPB9 [Acromyrmex echinatior]
Length = 130
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 69 ELTHIVADVISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRW 128
Query: 71 RE 72
E
Sbjct: 129 TE 130
>gi|383849643|ref|XP_003700454.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Megachile rotundata]
gi|307211986|gb|EFN87892.1| DNA-directed RNA polymerase II subunit RPB9 [Harpegnathos saltator]
Length = 130
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 69 ELTHIVADVISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRW 128
Query: 71 RE 72
E
Sbjct: 129 TE 130
>gi|84996923|ref|XP_953183.1| RNA polymerase small subunit [Theileria annulata strain Ankara]
gi|65304179|emb|CAI76558.1| RNA polymerase small subunit, putative [Theileria annulata]
Length = 108
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE + A +++ CP C + AYFM IQTRSADEPMT F+ C C RW
Sbjct: 49 KEAGKTLFEANEFQHAPRIPAVCPSCNNKEAYFMSIQTRSADEPMTQFFVC--TGCLKRW 106
Query: 71 RE 72
+E
Sbjct: 107 KE 108
>gi|159116058|ref|XP_001708251.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
gi|157436361|gb|EDO80577.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide [Giardia lamblia
ATCC 50803]
Length = 103
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 15 HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
H + EN +E CPKC H +AY+ +Q RSADE T F++CC+ CG ++R
Sbjct: 46 HYVAQERMTENRPVIDETCPKCHHGQAYYASMQMRSADEGQTIFFECCS--CGHKYR 100
>gi|340722934|ref|XP_003399854.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Bombus
terrestris]
gi|350418780|ref|XP_003491964.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Bombus
impatiens]
Length = 130
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 69 ELTHIVADVISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCSHRW 128
Query: 71 RE 72
E
Sbjct: 129 TE 130
>gi|327310138|ref|YP_004337035.1| transcription termination factor Tfs [Thermoproteus uzoniensis
768-20]
gi|326946617|gb|AEA11723.1| transcription termination factor Tfs [Thermoproteus uzoniensis
768-20]
Length = 98
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ ++ A E + T+ CPKC + AY QTR+ADEP T FY+C +CG+ WRE
Sbjct: 40 NEILVADAVAETLPKTKAVCPKCGNEEAYVWMQQTRAADEPPTRFYRC--TRCGYTWRE 96
>gi|374326953|ref|YP_005085153.1| transcription termination factor Tfs [Pyrobaculum sp. 1860]
gi|356642222|gb|AET32901.1| transcription termination factor Tfs [Pyrobaculum sp. 1860]
Length = 109
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/40 (65%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H AYF QTR+ADEP T FYKC KCG WRE
Sbjct: 70 CPKCGHDEAYFWVQQTRAADEPPTRFYKC--TKCGHTWRE 107
>gi|118431049|ref|NP_147234.2| transcription factor S [Aeropyrum pernix K1]
gi|116062375|dbj|BAA79403.2| archaeal transcription factor S [Aeropyrum pernix K1]
Length = 118
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H YF +QTRSADEPMT FY+C +C + WRE
Sbjct: 79 CPKCGHDEVYFWMMQTRSADEPMTRFYRC--KRCRYTWRE 116
>gi|240103105|ref|YP_002959414.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
gi|239910659|gb|ACS33550.1| Transcription elongation factor S (TFS_arch) [Thermococcus
gammatolerans EJ3]
Length = 110
Score = 52.4 bits (124), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ K + ++ + + TT+ CPKC + AY+ ++QTR+ DEP T FYKC KC
Sbjct: 45 KVEHKPDEGIIVVEQDLKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKC--TKC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYVWR 107
>gi|336369371|gb|EGN97713.1| hypothetical protein SERLA73DRAFT_184533 [Serpula lacrymans var.
lacrymans S7.3]
gi|336382153|gb|EGO23304.1| hypothetical protein SERLADRAFT_472264 [Serpula lacrymans var.
lacrymans S7.9]
Length = 298
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE + AA + +T +C +C+ + + Q QTRSADEPMTTF C N CG
Sbjct: 236 KIKEDNFFKSLGAAEQEAETDAFQCGRCKQRKCRYRQAQTRSADEPMTTFVTCVN--CGN 293
Query: 69 RWR 71
RW+
Sbjct: 294 RWK 296
>gi|260949205|ref|XP_002618899.1| hypothetical protein CLUG_00058 [Clavispora lusitaniae ATCC 42720]
gi|238846471|gb|EEQ35935.1| hypothetical protein CLUG_00058 [Clavispora lusitaniae ATCC 42720]
Length = 309
Score = 52.4 bits (124), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 271 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 307
>gi|256810757|ref|YP_003128126.1| transcription termination factor Tfs [Methanocaldococcus fervens
AG86]
gi|256793957|gb|ACV24626.1| transcription termination factor Tfs [Methanocaldococcus fervens
AG86]
Length = 108
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/62 (51%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE V+ G E + TT +CPKC H AY+ QTR ADEP T FYKC KCG W
Sbjct: 48 KEKITVIEGEGV-ETLPTTRVECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTW 104
Query: 71 RE 72
RE
Sbjct: 105 RE 106
>gi|330921683|ref|XP_003299524.1| hypothetical protein PTT_10532 [Pyrenophora teres f. teres 0-1]
gi|311326749|gb|EFQ92363.1| hypothetical protein PTT_10532 [Pyrenophora teres f. teres 0-1]
Length = 306
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K+K + ++ M A E + E +C KC+ + Q QTRSADEPMTTF +C N C
Sbjct: 244 KLKAENMNEAM--VAQVEKAISKEFQCSKCKKKMVSYSQAQTRSADEPMTTFCECMN--C 299
Query: 67 GFRWR 71
G RW+
Sbjct: 300 GNRWK 304
>gi|71421900|ref|XP_811947.1| RNA polymerase III C11 subunit [Trypanosoma cruzi strain CL Brener]
gi|70876670|gb|EAN90096.1| RNA polymerase III C11 subunit, putative [Trypanosoma cruzi]
Length = 167
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 44/72 (61%), Gaps = 8/72 (11%)
Query: 1 MRCGRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK 60
++ +K K +E+D GG E+ C + RA+++QIQ RSADEP TTF+K
Sbjct: 103 VKANGIKTKNEEVD---GGQLITVRCQNDEKFC---DGNRAHYVQIQMRSADEPATTFFK 156
Query: 61 CCNIKCGFRWRE 72
C +KCGF+W++
Sbjct: 157 C--LKCGFQWKQ 166
>gi|300120315|emb|CBK19869.2| unnamed protein product [Blastocystis hominis]
Length = 214
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
KC +C + +MQ QTRSADEPMT F++C N CG RWRE
Sbjct: 176 KCRRCGSDKTQYMQKQTRSADEPMTVFFECMN--CGKRWRE 214
>gi|448518329|ref|XP_003867941.1| Dst1 protein [Candida orthopsilosis Co 90-125]
gi|380352280|emb|CCG22505.1| Dst1 protein [Candida orthopsilosis]
Length = 300
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 262 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 298
>gi|209876019|ref|XP_002139452.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
gi|209555058|gb|EEA05103.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
Length = 322
Score = 52.0 bits (123), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + + Q+QTRSADEPMTTF +C N CG RW+
Sbjct: 285 CGKCRTNKTTYFQMQTRSADEPMTTFVRCLN--CGNRWK 321
>gi|154335868|ref|XP_001564170.1| putative RNA polymerase III C11 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134061204|emb|CAM38226.1| putative RNA polymerase III C11 subunit [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 162
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 36 CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +AYF+QIQ RSADEP T F+KC ++CG++WR+
Sbjct: 127 CRSTKAYFIQIQMRSADEPATVFFKC--VECGYQWRQ 161
>gi|353234293|emb|CCA66319.1| related to transcription elongation factor TFIIS [Piriformospora
indica DSM 11827]
Length = 280
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + +T +C KC+ + + Q QTRSADEPMTTF C N CG RW+
Sbjct: 229 GAGEQQAETDAFQCGKCKQRKTIYRQAQTRSADEPMTTFVTCVN--CGNRWK 278
>gi|189203175|ref|XP_001937923.1| transcription elongation factor S-II [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187985022|gb|EDU50510.1| transcription elongation factor S-II [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 306
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K+K + ++ M A E + E +C KC+ + Q QTRSADEPMTTF +C N C
Sbjct: 244 KLKAENMNEAM--VAQVEKAISKEFQCSKCKKKMVSYSQAQTRSADEPMTTFCECMN--C 299
Query: 67 GFRWR 71
G RW+
Sbjct: 300 GNRWK 304
>gi|71029042|ref|XP_764164.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351118|gb|EAN31881.1| hypothetical protein TP04_0529 [Theileria parva]
Length = 108
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE + A +++ CP C + AYFM IQTRSADEPMT F+ C C RW
Sbjct: 49 KEAGKTLFEANEFKHAPRIPAVCPACNNKEAYFMSIQTRSADEPMTQFFVC--TACLKRW 106
Query: 71 RE 72
+E
Sbjct: 107 KE 108
>gi|344304668|gb|EGW34900.1| hypothetical protein SPAPADRAFT_131482 [Spathaspora passalidarum
NRRL Y-27907]
Length = 296
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 258 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 294
>gi|344232834|gb|EGV64707.1| transcription elongation factor [Candida tenuis ATCC 10573]
Length = 286
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 248 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 284
>gi|150864771|ref|XP_001383742.2| hypothetical protein PICST_57286 [Scheffersomyces stipitis CBS
6054]
gi|149386027|gb|ABN65713.2| transcription elongation factor S-IIMeiotic DNA recombination
factor (STP-alpha) [Scheffersomyces stipitis CBS 6054]
Length = 294
Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 256 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 292
>gi|443894971|dbj|GAC72317.1| transcription elongation factor TFIIS [Pseudozyma antarctica T-34]
Length = 321
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 25/53 (47%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 19 GAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
GAAA E +T +C +C+ + + Q+QTRSADEPMTTF C N C +W+
Sbjct: 270 GAAAQE-AETDAFQCGRCKQRKTRYYQMQTRSADEPMTTFVTCTN--CNHKWK 319
>gi|289192260|ref|YP_003458201.1| transcription termination factor Tfs [Methanocaldococcus sp.
FS406-22]
gi|288938710|gb|ADC69465.1| transcription termination factor Tfs [Methanocaldococcus sp.
FS406-22]
Length = 108
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ E + TT +CPKC H AY+ QTR ADEP T FYKC KCG WRE
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>gi|168033194|ref|XP_001769101.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679630|gb|EDQ66075.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 375
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 24 ENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+NV +T++ +C KC + + Q+QTRSADEPMTTF +C N C RW+
Sbjct: 327 QNVASTDQFRCGKCGQRKTTYFQLQTRSADEPMTTFVQCVN--CNARWK 373
>gi|15669335|ref|NP_248140.1| transcription-associated protein TFIIS [Methanocaldococcus
jannaschii DSM 2661]
gi|3024570|sp|Q58548.1|RPOM_METJA RecName: Full=DNA-directed RNA polymerase subunit M
gi|1591780|gb|AAB99148.1| transcription-associated protein ('TFIIS') [Methanocaldococcus
jannaschii DSM 2661]
Length = 108
Score = 51.6 bits (122), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ E + TT +CPKC H AY+ QTR ADEP T FYKC KCG WRE
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>gi|294656076|ref|XP_458316.2| DEHA2C14564p [Debaryomyces hansenii CBS767]
gi|199430838|emb|CAG86394.2| DEHA2C14564p [Debaryomyces hansenii CBS767]
Length = 290
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 252 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 288
>gi|354543920|emb|CCE40642.1| hypothetical protein CPAR2_106770 [Candida parapsilosis]
Length = 300
Score = 51.6 bits (122), Expect = 5e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 262 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 298
>gi|345004646|ref|YP_004807499.1| transcription termination factor Tfs [halophilic archaeon DL31]
gi|344320272|gb|AEN05126.1| transcription termination factor Tfs [halophilic archaeon DL31]
Length = 105
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TTE +CP+C H RA F Q RSADE T F+ C +CG++WRE
Sbjct: 60 TTETRCPECGHDRASFQMQQIRSADESETRFFTC--TECGYKWRE 102
>gi|448413277|ref|ZP_21577114.1| hypothetical protein C475_22394 [Halosimplex carlsbadense 2-9-1]
gi|445667092|gb|ELZ19740.1| hypothetical protein C475_22394 [Halosimplex carlsbadense 2-9-1]
Length = 578
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+T CP C H RA++ +Q RS DEP T C + CG RWRE
Sbjct: 534 STTSTCPDCSHERAHYRLVQLRSTDEPPTRLLSC--VSCGRRWRE 576
>gi|223478880|ref|YP_002583424.1| transcription factor S [Thermococcus sp. AM4]
gi|214034106|gb|EEB74932.1| Transcription factor S [Thermococcus sp. AM4]
Length = 110
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ + TT+ CPKC + AY+ ++QTR+ DEP T FYKC KCG+ WR
Sbjct: 62 KTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYKC--TKCGYVWR 107
>gi|126465542|ref|YP_001040651.1| DNA-directed RNA polymerase subunit M [Staphylothermus marinus F1]
gi|126014365|gb|ABN69743.1| DNA-directed RNA polymerase, subunit M [Staphylothermus marinus F1]
Length = 104
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/45 (55%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E CPKC + AY+ +QTR+ADEP T FYKC +CG+ WRE
Sbjct: 60 TREVTCPKCGYHEAYYWIVQTRAADEPPTRFYKC--RRCGYVWRE 102
>gi|340058056|emb|CCC52409.1| putative RNA polymerase III C11 subunit [Trypanosoma vivax Y486]
Length = 126
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 31/38 (81%), Gaps = 2/38 (5%)
Query: 35 KCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C+ +A ++QIQ RSADEP TTF+KC +KCGF+W++
Sbjct: 90 QCDSNKALYVQIQMRSADEPATTFFKC--LKCGFQWKQ 125
>gi|325967986|ref|YP_004244178.1| transcription termination factor Tfs [Vulcanisaeta moutnovskia
768-28]
gi|323707189|gb|ADY00676.1| transcription termination factor Tfs [Vulcanisaeta moutnovskia
768-28]
Length = 100
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
E + ++ CPKC + AYF QTR+ADEP T FYKC +CG+ WRE
Sbjct: 52 EALPKVKKTCPKCGYEEAYFWVQQTRAADEPPTRFYKCA--RCGYVWRE 98
>gi|164661661|ref|XP_001731953.1| hypothetical protein MGL_1221 [Malassezia globosa CBS 7966]
gi|159105854|gb|EDP44739.1| hypothetical protein MGL_1221 [Malassezia globosa CBS 7966]
Length = 304
Score = 51.6 bits (122), Expect = 6e-05, Method: Composition-based stats.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 15 HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
H GA A E +T +C KC+ + + Q+QTRSADEPMTTF C N C +W+
Sbjct: 249 HNAKGAEAQE-AETDAFQCGKCKQRKTRYYQMQTRSADEPMTTFVTCVN--CNHKWK 302
>gi|156537281|ref|XP_001605923.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Nasonia vitripennis]
Length = 131
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H + F Q QTR A+E M +Y C N C RW
Sbjct: 70 ELTHIVADVISDPTLPRTEEHPCPKCNHRESVFFQAQTRRAEEEMRLYYVCTNAHCTHRW 129
Query: 71 RE 72
E
Sbjct: 130 TE 131
>gi|167535081|ref|XP_001749215.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163772368|gb|EDQ86021.1| predicted protein [Monosiga brevicollis MX1]
Length = 286
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T + CP+C+ A + ++QTRSADEPMT F C KCG RWR
Sbjct: 237 AVAEGASTDQLVCPRCKARDASYTEVQTRSADEPMTIFASC--KKCGKRWR 285
>gi|68486327|ref|XP_712962.1| hypothetical protein CaO19.4537 [Candida albicans SC5314]
gi|68486518|ref|XP_712868.1| hypothetical protein CaO19.12012 [Candida albicans SC5314]
gi|46434285|gb|EAK93699.1| hypothetical protein CaO19.12012 [Candida albicans SC5314]
gi|46434386|gb|EAK93797.1| hypothetical protein CaO19.4537 [Candida albicans SC5314]
gi|238879330|gb|EEQ42968.1| hypothetical protein CAWG_01194 [Candida albicans WO-1]
Length = 305
Score = 51.6 bits (122), Expect = 7e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 267 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 303
>gi|145591990|ref|YP_001153992.1| transcription termination factor Tfs [Pyrobaculum arsenaticum DSM
13514]
gi|379003304|ref|YP_005258976.1| transcription factor S, archaeal [Pyrobaculum oguniense TE7]
gi|145283758|gb|ABP51340.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum arsenaticum DSM
13514]
gi|375158757|gb|AFA38369.1| transcription factor S, archaeal [Pyrobaculum oguniense TE7]
Length = 110
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H AYF QTR+ADEP T FY+C KCG WRE
Sbjct: 71 CPKCGHDEAYFWVQQTRAADEPPTRFYRC--TKCGHTWRE 108
>gi|426192898|gb|EKV42833.1| hypothetical protein AGABI2DRAFT_195610 [Agaricus bisporus var.
bisporus H97]
Length = 293
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE + +AA + +T +C +C+ + + Q QTRSADEPMTTF C N CG
Sbjct: 231 KIKEENLFKSLSAAEQAAETDAFQCGRCKQRQCRYRQAQTRSADEPMTTFVTCTN--CGN 288
Query: 69 RWR 71
RW+
Sbjct: 289 RWK 291
>gi|256071836|ref|XP_002572244.1| transcription elongation factor s-II [Schistosoma mansoni]
gi|360043833|emb|CCD81379.1| putative transcription elongation factor s-II [Schistosoma mansoni]
Length = 318
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M E T +C KC+ + + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 264 DHQMAVTGGTE---TDLLRCGKCKQTKCTYNQVQTRSADEPMTTFVYCNN--CGHRWK 316
>gi|409075972|gb|EKM76347.1| hypothetical protein AGABI1DRAFT_45124 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 293
Score = 51.2 bits (121), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE + +AA + +T +C +C+ + + Q QTRSADEPMTTF C N CG
Sbjct: 231 KIKEENLFKSLSAAEQAAETDAFQCGRCKQRQCRYRQAQTRSADEPMTTFVTCTN--CGN 288
Query: 69 RWR 71
RW+
Sbjct: 289 RWK 291
>gi|290973573|ref|XP_002669522.1| hypothetical protein NAEGRDRAFT_82114 [Naegleria gruberi]
gi|284083071|gb|EFC36778.1| hypothetical protein NAEGRDRAFT_82114 [Naegleria gruberi]
Length = 176
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
KC KC+ + + Q+QTRS+DEPMTTF C N CG RW++
Sbjct: 138 KCTKCQSTQCTYYQLQTRSSDEPMTTFITCLN--CGNRWKQ 176
>gi|16082042|ref|NP_394466.1| DNA-directed RNA polymerase subunit M [Thermoplasma acidophilum
DSM 1728]
gi|10640321|emb|CAC12135.1| probable transcription-associated protein TFIIS [Thermoplasma
acidophilum]
Length = 100
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 41/80 (51%), Gaps = 12/80 (15%)
Query: 3 CGRLKIKPKEIDHVMGGAAAWENVDTTEEK----------CPKCEHPRAYFMQIQTRSAD 52
CG K KE ++ +A E + EE CP+C H A ++ QTRSAD
Sbjct: 22 CGYEISKNKETIKIVSKSADKETIMIKEEVSAEPLDSDAVCPRCHHKGARYVLKQTRSAD 81
Query: 53 EPMTTFYKCCNIKCGFRWRE 72
EP T FY C +CG+RWRE
Sbjct: 82 EPETKFYTC--EECGYRWRE 99
>gi|70606013|ref|YP_254883.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius DSM 639]
gi|68566661|gb|AAY79590.1| DNA-directed RNA polymerase subunit M [Sulfolobus acidocaldarius
DSM 639]
Length = 100
Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C + AYF +QTRSADEP T FYKC KCG WRE
Sbjct: 61 CPSCGNDEAYFWILQTRSADEPATRFYKC--TKCGKVWRE 98
>gi|241948245|ref|XP_002416845.1| DNA strand transfer protein alpha, putative; dna strand transferase
1, putative; pyrimidine pathway regulatory protein 2,
putative; transcription elongation factor SII, putative
[Candida dubliniensis CD36]
gi|223640183|emb|CAX44432.1| DNA strand transfer protein alpha, putative [Candida dubliniensis
CD36]
Length = 303
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 265 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 301
>gi|149244436|ref|XP_001526761.1| hypothetical protein LELG_01589 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146449155|gb|EDK43411.1| hypothetical protein LELG_01589 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 322
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 284 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 320
>gi|226478976|emb|CAX72983.1| RNA polymerase II elongation factor [Schistosoma japonicum]
Length = 317
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M E T +C KC+ + + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 263 DHQMAVTGGTE---TDLLRCGKCKQTKCTYNQVQTRSADEPMTTFVYCNN--CGHRWK 315
>gi|169867242|ref|XP_001840202.1| hypothetical protein CC1G_02665 [Coprinopsis cinerea okayama7#130]
gi|116498754|gb|EAU81649.1| hypothetical protein CC1G_02665 [Coprinopsis cinerea okayama7#130]
Length = 298
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AA + +T +C KC+ + + Q QTRSADEPMTTF C + CG RW+
Sbjct: 247 AAQEADAETDAFQCSKCKQRKCRYRQAQTRSADEPMTTFVTC--VVCGNRWK 296
>gi|328351440|emb|CCA37839.1| Transcription elongation factor A protein 2 .l [Komagataella
pastoris CBS 7435]
Length = 329
Score = 51.2 bits (121), Expect = 8e-05, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 21 AAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A EN T+ +C KC+ + + Q QTRSADEP+TTF KC N CG RW+
Sbjct: 278 GATENNSVTDRFECGKCKQRKVSYFQKQTRSADEPLTTFCKCEN--CGNRWK 327
>gi|414872417|tpg|DAA50974.1| TPA: hypothetical protein ZEAMMB73_892272 [Zea mays]
Length = 115
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 11/74 (14%)
Query: 7 KIKPKEIDHVM-------GGAAAWENV----DTTEEKCPKCEHPRAYFMQIQTRSADEPM 55
+I+ KEI + M G E+V T + CPKC+HP+A F IQ RSADE
Sbjct: 40 EIEGKEIQYTMTAEDIRRGLKTQTEDVVGQRPVTNKACPKCDHPKAEFYNIQMRSADEGE 99
Query: 56 TTFYKCCNIKCGFR 69
TTFY C C F+
Sbjct: 100 TTFYMCKGCGCNFK 113
>gi|159040983|ref|YP_001540235.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
gi|157919818|gb|ABW01245.1| transcription termination factor Tfs [Caldivirga maquilingensis
IC-167]
Length = 115
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KP E V+ A +N+ + CP+C + AYF QTR+ADEP T FY+C +CG+
Sbjct: 54 KPDEKPVVLTKAN--DNLPKVKVTCPRCGNNEAYFWIQQTRAADEPPTRFYRC--TRCGY 109
Query: 69 RWRE 72
WRE
Sbjct: 110 TWRE 113
>gi|307183943|gb|EFN70531.1| DNA-directed RNA polymerase II subunit RPB9 [Camponotus floridanus]
Length = 103
Score = 51.2 bits (121), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 42 ELTHIVADVISDPTLPRTEEHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRW 101
Query: 71 RE 72
E
Sbjct: 102 TE 103
>gi|393220677|gb|EJD06163.1| transcription elongation factor [Fomitiporia mediterranea MF3/22]
Length = 296
Score = 50.8 bits (120), Expect = 9e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + +T +C KC+ + + Q QTRSADEPMTTF C N C RW+
Sbjct: 245 GAEEQQAETDAFQCGKCKQRKTRYRQAQTRSADEPMTTFVTCVN--CNHRWK 294
>gi|332796909|ref|YP_004458409.1| transcription termination factor Tfs [Acidianus hospitalis W1]
gi|332694644|gb|AEE94111.1| transcription termination factor Tfs [Acidianus hospitalis W1]
Length = 100
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ AYF +QTR+ADEP T FYKC KCG WRE
Sbjct: 61 CPNCKNDEAYFWILQTRAADEPATRFYKC--TKCGKVWRE 98
>gi|451849746|gb|EMD63049.1| hypothetical protein COCSADRAFT_182336 [Cochliobolus sativus
ND90Pr]
Length = 306
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ + ++ M A E + E +C KC+ + + Q QTRSADEPMTTF +C N C
Sbjct: 244 KLEKENMNQAM--VAQVEKAISKEFQCGKCKQKKVSYSQAQTRSADEPMTTFCECMN--C 299
Query: 67 GFRWR 71
G RW+
Sbjct: 300 GNRWK 304
>gi|169236410|ref|YP_001689610.1| DNA-directed RNA polymerase subunit M2 [Halobacterium salinarum R1]
gi|167727476|emb|CAP14264.1| transcription elongation factor TFS [Halobacterium salinarum R1]
Length = 104
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
AA E T EE CP+C H A++ QT SADEP T F+KC CG RWR+
Sbjct: 53 AASEGKPTAEETCPECGHGEAWYTIKQTGSADEPPTRFFKC--QDCGNRWRD 102
>gi|15790670|ref|NP_280494.1| hypothetical protein VNG1743C [Halobacterium sp. NRC-1]
gi|10581201|gb|AAG19974.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 219
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
AA E T EE CP+C H A++ QT SADEP T F+KC + CG RWR+
Sbjct: 168 AASEGKPTAEETCPECGHGEAWYTIKQTGSADEPPTRFFKCQD--CGNRWRD 217
>gi|374636197|ref|ZP_09707776.1| transcription termination factor Tfs [Methanotorris formicicus
Mc-S-70]
gi|373559770|gb|EHP86054.1| transcription termination factor Tfs [Methanotorris formicicus
Mc-S-70]
Length = 105
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 11 KEIDHVMGGAAAWENVDTTEE---KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
++I+H E VDT +CPKC H AY+ QTR ADEP T FYKC KCG
Sbjct: 41 EKIEHKQPEVTVIEQVDTLPTIRIECPKCGHMEAYWWLQQTRCADEPETRFYKC--KKCG 98
Query: 68 FRWRE 72
WRE
Sbjct: 99 HTWRE 103
>gi|156056094|ref|XP_001593971.1| hypothetical protein SS1G_05399 [Sclerotinia sclerotiorum 1980]
gi|154703183|gb|EDO02922.1| hypothetical protein SS1G_05399 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 123
Score = 50.8 bits (120), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKC--PKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
+E + V GG AW N DT ++C +C A +Q RSADEPMT FY+C + C
Sbjct: 61 EEKEDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYRC--MTCAN 118
Query: 69 RWRE 72
+WRE
Sbjct: 119 QWRE 122
>gi|157868132|ref|XP_001682619.1| putative RNA polymerase III C11 subunit [Leishmania major strain
Friedlin]
gi|68126074|emb|CAJ07127.1| putative RNA polymerase III C11 subunit [Leishmania major strain
Friedlin]
Length = 151
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 36 CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C+ +AYF+QIQ RSADEP T F+KC ++CG +WR+
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKC--VECGHQWRQ 150
>gi|257075578|ref|ZP_05569939.1| DNA-directed RNA polymerase subunit M [Ferroplasma acidarmanus
fer1]
Length = 101
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
++ CP C H AY++ QTRSADEP T FY C CG RWRE
Sbjct: 59 SDAVCPVCHHTGAYYLLKQTRSADEPETKFYTC--ESCGHRWRE 100
>gi|146084432|ref|XP_001465005.1| putative RNA polymerase III C11 subunit [Leishmania infantum JPCM5]
gi|398014058|ref|XP_003860220.1| RNA polymerase III C11 subunit, putative [Leishmania donovani]
gi|134069101|emb|CAM67247.1| putative RNA polymerase III C11 subunit [Leishmania infantum JPCM5]
gi|322498440|emb|CBZ33513.1| RNA polymerase III C11 subunit, putative [Leishmania donovani]
Length = 151
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 29/37 (78%), Gaps = 2/37 (5%)
Query: 36 CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C+ +AYF+QIQ RSADEP T F+KC ++CG +WR+
Sbjct: 116 CQSTKAYFIQIQMRSADEPATVFFKC--VECGHQWRQ 150
>gi|168041433|ref|XP_001773196.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675555|gb|EDQ62049.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 353
Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 24 ENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+NV +T++ +C KC + + Q+QTRSADEPMTTF C N C RW+
Sbjct: 305 QNVASTDQFRCGKCGQRKTTYFQLQTRSADEPMTTFVTCVN--CNARWK 351
>gi|297526173|ref|YP_003668197.1| Transcription factor TFIIS [Staphylothermus hellenicus DSM 12710]
gi|297255089|gb|ADI31298.1| Transcription factor TFIIS [Staphylothermus hellenicus DSM 12710]
Length = 104
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E CP+C + AY+ +QTR+ADEP T FYKC +CG+ WRE
Sbjct: 60 TREVTCPRCGYHEAYYWVVQTRAADEPPTRFYKC--RRCGYVWRE 102
>gi|642273|emb|CAA50073.1| transcription associated protein [Sulfolobus acidocaldarius]
Length = 111
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C + AYF +QTRSADEP T FYKC KCG WRE
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKC--TKCGKVWRE 109
>gi|449066209|ref|YP_007433291.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449068485|ref|YP_007435566.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
gi|73920769|sp|Q07271.2|RPOM_SULAC RecName: Full=DNA-directed RNA polymerase subunit M
gi|449034717|gb|AGE70143.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius N8]
gi|449036993|gb|AGE72418.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
acidocaldarius Ron12/I]
Length = 111
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C + AYF +QTRSADEP T FYKC KCG WRE
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKC--TKCGKVWRE 109
>gi|452001563|gb|EMD94022.1| hypothetical protein COCHEDRAFT_1201848 [Cochliobolus
heterostrophus C5]
Length = 306
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ + ++ M A E + E +C KC+ + + Q QTRSADEPMTTF +C N C
Sbjct: 244 KLEKENMNQAM--VAQVEKAISKEFQCGKCKQKKVSYSQAQTRSADEPMTTFCECMN--C 299
Query: 67 GFRWR 71
G RW+
Sbjct: 300 GNRWK 304
>gi|159162918|pdb|1QYP|A Chain A, Thermococcus Celer Rpb9, Nmr, 25 Structures
Length = 57
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ + TT+ CPKC + AY+ ++QTR+ DEP T FYKC KCG WR
Sbjct: 9 KTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKCGHTWRS 55
>gi|392572001|gb|EIW65173.1| DNA-directed RNA polymerase I kDa polypeptide [Trametes versicolor
FP-101664 SS1]
Length = 126
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AA E++ EKCP+C H AY + Q RSADE T FY C +KC F WR
Sbjct: 75 AANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTC--VKCKFGWR 123
>gi|399217223|emb|CCF73910.1| unnamed protein product [Babesia microti strain RI]
Length = 112
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 30/53 (56%), Gaps = 6/53 (11%)
Query: 24 ENVDTTEEK----CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
EN++ K CP C + AYF IQ RSADEP T FY C KC RWRE
Sbjct: 62 ENLENLAAKIMAICPTCNNNEAYFYSIQIRSADEPSTNFYTC--TKCKKRWRE 112
>gi|119871953|ref|YP_929960.1| transcription termination factor Tfs [Pyrobaculum islandicum DSM
4184]
gi|119673361|gb|ABL87617.1| DNA-directed RNA polymerase, subunit M [Pyrobaculum islandicum DSM
4184]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H AY QTR+ADEP T FY+C KCG+ WRE
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRC--TKCGYTWRE 108
>gi|148643414|ref|YP_001273927.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222445656|ref|ZP_03608171.1| hypothetical protein METSMIALI_01297 [Methanobrevibacter smithii
DSM 2375]
gi|261349796|ref|ZP_05975213.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
gi|148552431|gb|ABQ87559.1| DNA-directed RNA polymerase subunit M, RpoM [Methanobrevibacter
smithii ATCC 35061]
gi|222435221|gb|EEE42386.1| transcription factor S [Methanobrevibacter smithii DSM 2375]
gi|288860580|gb|EFC92878.1| transcription factor S [Methanobrevibacter smithii DSM 2374]
Length = 104
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE D V+ + TT+ CP+C H A + QTRSADE T F+KC +KCG
Sbjct: 41 KIKENDSVIEKGEDVNTLPTTKAVCPECGHTEASWWLQQTRSADEAETRFFKC--LKCGH 98
Query: 69 RWRE 72
WRE
Sbjct: 99 TWRE 102
>gi|389852512|ref|YP_006354746.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
gi|388249818|gb|AFK22671.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. ST04]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K K + V+ + + T + CP+C H A++ ++QTR+ DEP T FYKC KC
Sbjct: 45 EVKHKPDEGVIVVEQDFSTLPTAKVTCPRCGHNEAWWWELQTRAGDEPSTIFYKC--KKC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYVWR 107
>gi|254569920|ref|XP_002492070.1| General transcription elongation factor TFIIS [Komagataella
pastoris GS115]
gi|238031867|emb|CAY69790.1| General transcription elongation factor TFIIS [Komagataella
pastoris GS115]
Length = 285
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 21 AAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A EN T+ +C KC+ + + Q QTRSADEP+TTF KC N CG RW+
Sbjct: 234 GATENNSVTDRFECGKCKQRKVSYFQKQTRSADEPLTTFCKCEN--CGNRWK 283
>gi|18313781|ref|NP_560448.1| putative DNA-directed RNA polymerase subunit M [Pyrobaculum
aerophilum str. IM2]
gi|18161340|gb|AAL64630.1| DNA-directed RNA polymerase subunit M [Pyrobaculum aerophilum str.
IM2]
Length = 110
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H AY QTR+ADEP T FY+C KCG+ WRE
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRC--TKCGYTWRE 108
>gi|384484057|gb|EIE76237.1| transcription elongation factor S-II [Rhizopus delemar RA 99-880]
Length = 304
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + + Q+QTRSADEPMTTF C N CG W+
Sbjct: 265 KCGKCQGRKCTYFQMQTRSADEPMTTFVTCVN--CGNHWK 302
>gi|303290875|ref|XP_003064724.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226453750|gb|EEH51058.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 325
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + + Q+QTRSADEPMTTF C N C RW+
Sbjct: 286 KCGKCKQRKCTYYQLQTRSADEPMTTFVTCVN--CDNRWK 323
>gi|389860780|ref|YP_006363020.1| transcription factor S [Thermogladius cellulolyticus 1633]
gi|388525684|gb|AFK50882.1| transcription factor S [Thermogladius cellulolyticus 1633]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E CPKC + AY+ IQTR+ADEP T FYKC +CG WRE
Sbjct: 59 TREVTCPKCGYHEAYYWFIQTRAADEPPTRFYKC--RRCGHVWRE 101
>gi|328876868|gb|EGG25231.1| RNA polymerase II elongation factor [Dictyostelium fasciculatum]
Length = 325
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E T + +C KC+ + + Q+QTRSADEP+TTF C N C RW+
Sbjct: 278 EAATTDQFQCGKCKQRKCTYFQLQTRSADEPLTTFVTCVN--CNNRWK 323
>gi|145351408|ref|XP_001420072.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580305|gb|ABO98365.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 173
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 21 AAWENV-------DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A WE V T KC KC+ + + Q+QTRSADEPMTTF C ++CG RW+
Sbjct: 116 AEWEAVRGQQQEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTC--VECGNRWK 171
>gi|195113839|ref|XP_002001475.1| GI10814 [Drosophila mojavensis]
gi|193918069|gb|EDW16936.1| GI10814 [Drosophila mojavensis]
Length = 103
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 42 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 101
Query: 71 RE 72
E
Sbjct: 102 TE 103
>gi|358390984|gb|EHK40389.1| hypothetical protein TRIATDRAFT_302747 [Trichoderma atroviride IMI
206040]
Length = 305
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ R + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 267 CGKCKKKRVSYTQAQTRSADEPMTTFCECMN--CGNRWK 303
>gi|66361609|ref|XP_627328.1| transcription elongation factor TFIIS [Cryptosporidium parvum Iowa
II]
gi|46228708|gb|EAK89578.1| transcription elongation factor TFIIS [Cryptosporidium parvum Iowa
II]
Length = 332
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEPMTTF +C N CG RW+
Sbjct: 295 CGKCKTNKTTYYQMQTRSADEPMTTFVRCLN--CGNRWK 331
>gi|401419461|ref|XP_003874220.1| putative RNA polymerase III C11 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322490455|emb|CBZ25715.1| putative RNA polymerase III C11 subunit [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 151
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 28/37 (75%), Gaps = 2/37 (5%)
Query: 36 CEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +AYF+QIQ RSADEP T F+KC ++CG +WR+
Sbjct: 116 CRSTKAYFIQIQMRSADEPATVFFKC--VECGHQWRQ 150
>gi|58389474|ref|XP_317057.2| AGAP008393-PA [Anopheles gambiae str. PEST]
gi|55237295|gb|EAA12329.2| AGAP008393-PA [Anopheles gambiae str. PEST]
Length = 128
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 67 ELTHIVPDVISDPTLPRTEEHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNSSCCHRW 126
Query: 71 RE 72
E
Sbjct: 127 TE 128
>gi|449665814|ref|XP_002165403.2| PREDICTED: transcription elongation factor A protein 1-like [Hydra
magnipapillata]
Length = 287
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
Query: 1 MRCGRLKIKPKEI-DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
M+ R KI + I +H + A T + KC KC + Q+QTRSADEPMTTF
Sbjct: 219 MKKERKKITEEAIKEHQLATTAG---TATGQFKCGKCGKRNTTYNQVQTRSADEPMTTFV 275
Query: 60 KCCNIKCGFRWR 71
C I+CG RW+
Sbjct: 276 YC--IECGNRWK 285
>gi|209880253|ref|XP_002141566.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
gi|209557172|gb|EEA07217.1| transcription factor S-II domain-containing protein
[Cryptosporidium muris RN66]
Length = 256
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
+E CPKC H A+F Q Q RSADE T Y+CC KC +R
Sbjct: 214 KEICPKCSHNEAFFTQFQARSADEGTTVMYECC--KCHYR 251
>gi|340517178|gb|EGR47423.1| predicted protein [Trichoderma reesei QM6a]
Length = 309
Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ R + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 270 ECGKCKKKRVSYTQAQTRSADEPMTTFCECMN--CGNRWK 307
>gi|320100252|ref|YP_004175844.1| DNA-directed RNA polymerase subunit M [Desulfurococcus mucosus DSM
2162]
gi|319752604|gb|ADV64362.1| DNA-directed RNA polymerase, subunit M [Desulfurococcus mucosus DSM
2162]
Length = 114
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R++ +P E V+ T E CPKC AY+ +QTR+ADEP T F+KC
Sbjct: 47 RIEHRPDEKTLVLKSENEANLPVTREVTCPKCGWHEAYYWMLQTRAADEPPTRFFKC--T 104
Query: 65 KCGFRWRE 72
+CG WRE
Sbjct: 105 RCGHTWRE 112
>gi|385806138|ref|YP_005842536.1| DNA-directed RNA polymerase subunit M [Fervidicoccus fontis Kam940]
gi|383796001|gb|AFH43084.1| DNA-directed RNA polymerase, subunit M [Fervidicoccus fontis
Kam940]
Length = 104
Score = 50.1 bits (118), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC + Y+ +QTR+ADEP T FYKC KCG+ WRE
Sbjct: 65 CPKCGNNEVYYWTMQTRAADEPPTRFYKC--TKCGYVWRE 102
>gi|18977358|ref|NP_578715.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus DSM
3638]
gi|18893037|gb|AAL81110.1| DNA-directed RNA polymerase subunit m [Pyrococcus furiosus DSM
3638]
Length = 110
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 25 NVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ T + CPKC H A++ ++QTR+ DEP T FYKC KCG+ WR
Sbjct: 63 TLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKC--KKCGYVWR 107
>gi|67588103|ref|XP_665338.1| transcription elongation factor TFIIS.h [Cryptosporidium hominis
TU502]
gi|54655975|gb|EAL35108.1| transcription elongation factor TFIIS.h [Cryptosporidium hominis]
Length = 332
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEPMTTF +C N CG RW+
Sbjct: 295 CGKCKTNKTTYYQMQTRSADEPMTTFVRCLN--CGNRWK 331
>gi|254167896|ref|ZP_04874745.1| transcription factor S [Aciduliprofundum boonei T469]
gi|254167927|ref|ZP_04874776.1| transcription factor S [Aciduliprofundum boonei T469]
gi|197623187|gb|EDY35753.1| transcription factor S [Aciduliprofundum boonei T469]
gi|197623218|gb|EDY35784.1| transcription factor S [Aciduliprofundum boonei T469]
Length = 94
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H A++M QTR+ADEP T FY C KCG RWRE
Sbjct: 56 CPKCGHAGAHWMLQQTRAADEPETRFYIC--PKCGHRWRE 93
>gi|354610480|ref|ZP_09028436.1| transcription termination factor Tfs [Halobacterium sp. DL1]
gi|353195300|gb|EHB60802.1| transcription termination factor Tfs [Halobacterium sp. DL1]
Length = 104
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
A +E T EE CP+C H A++ QT SADEP T F+KC +CG RWR+
Sbjct: 53 ANFEGKPTAEETCPECGHDTAWYTIKQTGSADEPPTRFFKC--KECGARWRD 102
>gi|296109279|ref|YP_003616228.1| transcription termination factor Tfs [methanocaldococcus infernus
ME]
gi|295434093|gb|ADG13264.1| transcription termination factor Tfs [Methanocaldococcus infernus
ME]
Length = 104
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
+K KE V+ G E + T + +CPKC H AY+ QTR ADEP T FY+C KCG
Sbjct: 41 LKRKEEIAVIEGNEI-ETLPTIKIECPKCGHTEAYWWLQQTRCADEPETRFYRC--KKCG 97
Query: 68 FRWRE 72
WRE
Sbjct: 98 HTWRE 102
>gi|347829025|emb|CCD44722.1| similar to DNA-directed RNA polymerase III subunit rpc10
[Botryotinia fuckeliana]
Length = 123
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKC--PKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
+E + V GG AW N DT ++C +C A +Q RSADEPMT FY+C + C
Sbjct: 61 EEKEDVFGGKDAWANADTYPKQCANSECNGMVAAARFVQIRSADEPMTGFYRC--MTCTN 118
Query: 69 RWRE 72
+WRE
Sbjct: 119 QWRE 122
>gi|254585037|ref|XP_002498086.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
gi|238940980|emb|CAR29153.1| ZYRO0G01892p [Zygosaccharomyces rouxii]
Length = 125
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
LK+K + +G E T +EKCPKC H ++ +Q RSADE T FY C
Sbjct: 60 LKMKQSVVKTSIGRDDLGEGA-TIKEKCPKCGHDEMHYHTLQLRSADEGATVFYTC--TS 116
Query: 66 CGFRWR 71
CG+++R
Sbjct: 117 CGYKYR 122
>gi|218506065|gb|ACK77674.1| SD23432p [Drosophila melanogaster]
Length = 136
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 75 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 134
Query: 71 RE 72
E
Sbjct: 135 TE 136
>gi|118576604|ref|YP_876347.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
gi|118195125|gb|ABK78043.1| DNA-directed RNA polymerase, subunit M/Transcription elongation
factor TFIIS [Cenarchaeum symbiosum A]
Length = 103
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 4 GRLKIKPKEID---HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK 60
G K KP E +V+ G + + T + +C KC H A + +QTRSADEP T FY+
Sbjct: 32 GPTKAKPAEGTPEINVLDGPVDEKLLSTIKIECEKCGHGEAVWWMLQTRSADEPTTQFYR 91
Query: 61 CCNIKCGFRWR 71
C IKC WR
Sbjct: 92 C--IKCSHTWR 100
>gi|71032861|ref|XP_766072.1| transcription elongation factor SII [Theileria parva strain Muguga]
gi|68353029|gb|EAN33789.1| transcription elongation factor SII, putative [Theileria parva]
Length = 324
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C N C RWR
Sbjct: 286 KCNKCNSKVTTYYQLQTRSSDEPMTTFVTCLN--CKNRWR 323
>gi|255730739|ref|XP_002550294.1| hypothetical protein CTRG_04592 [Candida tropicalis MYA-3404]
gi|240132251|gb|EER31809.1| hypothetical protein CTRG_04592 [Candida tropicalis MYA-3404]
Length = 312
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 274 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 310
>gi|125774797|ref|XP_001358650.1| GA17176 [Drosophila pseudoobscura pseudoobscura]
gi|195145378|ref|XP_002013673.1| GL23270 [Drosophila persimilis]
gi|54638389|gb|EAL27791.1| GA17176 [Drosophila pseudoobscura pseudoobscura]
gi|194102616|gb|EDW24659.1| GL23270 [Drosophila persimilis]
Length = 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|397651491|ref|YP_006492072.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
gi|393189082|gb|AFN03780.1| DNA-directed RNA polymerase subunit M [Pyrococcus furiosus COM1]
Length = 109
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 25 NVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ T + CPKC H A++ ++QTR+ DEP T FYKC KCG+ WR
Sbjct: 62 TLPTAKVTCPKCGHNEAWWWELQTRAGDEPSTIFYKC--KKCGYVWR 106
>gi|159474128|ref|XP_001695181.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276115|gb|EDP01889.1| predicted protein [Chlamydomonas reinhardtii]
Length = 348
Score = 50.1 bits (118), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 3/52 (5%)
Query: 21 AAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A N TT+ +C +C+ + + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 297 GATTNAATTDMFQCGRCKQRKCTYYQLQTRSADEPMTTFVTCTN--CGQRWK 346
>gi|156937645|ref|YP_001435441.1| DNA-directed RNA polymerase subunit M [Ignicoccus hospitalis
KIN4/I]
gi|156566629|gb|ABU82034.1| DNA-directed RNA polymerase, subunit M [Ignicoccus hospitalis
KIN4/I]
Length = 113
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + CPKC H AY+ +QTR+ DEP T FYKC +CG WRE
Sbjct: 69 TRDVICPKCGHDEAYYWFVQTRAGDEPPTRFYKC--TRCGHVWRE 111
>gi|194746269|ref|XP_001955603.1| GF16163 [Drosophila ananassae]
gi|190628640|gb|EDV44164.1| GF16163 [Drosophila ananassae]
Length = 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|195444421|ref|XP_002069859.1| GK11344 [Drosophila willistoni]
gi|194165944|gb|EDW80845.1| GK11344 [Drosophila willistoni]
Length = 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|24646802|ref|NP_731898.1| RNA polymerase II 15kD subunit, isoform A [Drosophila melanogaster]
gi|386765759|ref|NP_001247099.1| RNA polymerase II 15kD subunit, isoform B [Drosophila melanogaster]
gi|194900739|ref|XP_001979913.1| GG16847 [Drosophila erecta]
gi|195329032|ref|XP_002031215.1| GM24158 [Drosophila sechellia]
gi|195501642|ref|XP_002097880.1| GE24228 [Drosophila yakuba]
gi|195570939|ref|XP_002103461.1| GD18953 [Drosophila simulans]
gi|81175192|sp|P36958.2|RPB9_DROME RecName: Full=DNA-directed RNA polymerase II subunit RPB9;
Short=RNA polymerase II subunit B9; AltName:
Full=DNA-directed RNA polymerase II 15.1 kDa polypeptide
gi|7299869|gb|AAF55045.1| RNA polymerase II 15kD subunit, isoform A [Drosophila melanogaster]
gi|190651616|gb|EDV48871.1| GG16847 [Drosophila erecta]
gi|194120158|gb|EDW42201.1| GM24158 [Drosophila sechellia]
gi|194183981|gb|EDW97592.1| GE24228 [Drosophila yakuba]
gi|194199388|gb|EDX12964.1| GD18953 [Drosophila simulans]
gi|383292703|gb|AFH06417.1| RNA polymerase II 15kD subunit, isoform B [Drosophila melanogaster]
Length = 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|269865738|ref|XP_002652029.1| hypothetical protein EBI_26246 [Enterocytozoon bieneusi H348]
gi|220063290|gb|EED42028.1| hypothetical protein EBI_26246 [Enterocytozoon bieneusi H348]
Length = 95
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 11/69 (15%)
Query: 8 IKPKEIDHVM----GGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
+ P + D + G +E +D CP+C H RA F ++QTRSADE T FY+C
Sbjct: 33 LSPTKTDEIFEKPSGELGNFEAID-----CPRCGHGRALFKEVQTRSADEATTVFYQC-- 85
Query: 64 IKCGFRWRE 72
+ C WR+
Sbjct: 86 VLCEHNWRQ 94
>gi|48105783|ref|XP_396002.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Apis
mellifera]
gi|380014440|ref|XP_003691240.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Apis
florea]
Length = 130
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 69 ELTHIVADVISDPTLPRTEDHPCPKCNHREAVFFQAQTRRAEEEMRLYYVCTNQHCCHRW 128
Query: 71 RE 72
E
Sbjct: 129 TE 130
>gi|170031519|ref|XP_001843632.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide [Culex
quinquefasciatus]
gi|167870460|gb|EDS33843.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide [Culex
quinquefasciatus]
Length = 127
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 66 ELTHIVPDVISDPTLPRTEEHACPKCAHREAVFFQAQTRRAEEEMRLYYVCTNPNCCHRW 125
Query: 71 RE 72
E
Sbjct: 126 TE 127
>gi|195053920|ref|XP_001993874.1| GH18685 [Drosophila grimshawi]
gi|193895744|gb|EDV94610.1| GH18685 [Drosophila grimshawi]
Length = 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|195399658|ref|XP_002058436.1| GJ14413 [Drosophila virilis]
gi|194141996|gb|EDW58404.1| GJ14413 [Drosophila virilis]
Length = 129
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|308808340|ref|XP_003081480.1| putative elongation factor (ISS) [Ostreococcus tauri]
gi|116059943|emb|CAL56002.1| putative elongation factor (ISS) [Ostreococcus tauri]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 34/58 (58%), Gaps = 9/58 (15%)
Query: 21 AAWENVDTTEE-------KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A WE V ++ KC KC+ + + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 69 AEWEAVRGQQQEASTDAFKCGKCKQRKCTYYQLQTRSADEPMTTFVTCVN--CGNRWK 124
>gi|3024569|sp|Q56254.1|RPOM_THECE RecName: Full=DNA-directed RNA polymerase subunit M
gi|443693|gb|AAA72052.1| RNA polymerase [Thermococcus celer]
Length = 110
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ ++K K + ++ + + TT+ CPKC + AY+ ++QTR+ DEP T FYKC
Sbjct: 43 KQEVKHKPDEGIVVIEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--T 100
Query: 65 KCGFRWR 71
KCG WR
Sbjct: 101 KCGHTWR 107
>gi|405121407|gb|AFR96176.1| positive transcription elongation factor [Cryptococcus neoformans
var. grubii H99]
Length = 333
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+T KC +C + + Q+QTRSADEPMTTF C N C RW+
Sbjct: 289 ETDAFKCGRCHQRKCTYYQMQTRSADEPMTTFVTCTN--CNNRWK 331
>gi|145546007|ref|XP_001458687.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124426508|emb|CAK91290.1| unnamed protein product [Paramecium tetraurelia]
Length = 118
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E+ CPKC H AYF Q RSADE T FY+C +KC FR++
Sbjct: 74 VIEQVCPKCSHEEAYFSTAQLRSADEGSTVFYEC--VKCQFRYQ 115
>gi|14590548|ref|NP_142616.1| DNA-directed RNA polymerase subunit M [Pyrococcus horikoshii OT3]
gi|3257072|dbj|BAA29755.1| 110aa long hypothetical transcription-associated protein
[Pyrococcus horikoshii OT3]
Length = 110
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK K + V+ + + T + CPKC + A++ ++QTR+ DEP T FYKC +C
Sbjct: 45 EIKHKPDEGVIVIEQDFSTLPTAKVTCPKCGYHEAWYWEVQTRAGDEPSTIFYKC--KRC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYVWR 107
>gi|332373524|gb|AEE61903.1| unknown [Dendroctonus ponderosae]
Length = 130
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CP C+H A F Q QTR A+E M +Y C N C RW
Sbjct: 69 ELTHIVSDVISDPTLPRTEDHHCPVCQHREAVFFQAQTRRAEEEMRLYYVCTNPHCAHRW 128
Query: 71 RE 72
E
Sbjct: 129 TE 130
>gi|403220912|dbj|BAM39045.1| transcription elongation factor [Theileria orientalis strain
Shintoku]
Length = 319
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q+QTRS+DEPMTTF C N C RWR
Sbjct: 281 KCGKCNSRQTTYYQLQTRSSDEPMTTFVTCLN--CKNRWR 318
>gi|313225202|emb|CBY20996.1| unnamed protein product [Oikopleura dioica]
Length = 295
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M A E T C KC+ + + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 241 DHQM---AQNEGTQTDMFSCGKCKSKKCTYTQLQTRSADEPMTTFVYC--MACGNRWK 293
>gi|313221451|emb|CBY32201.1| unnamed protein product [Oikopleura dioica]
Length = 295
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/58 (46%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M A E T C KC+ + + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 241 DHQM---AQNEGTQTDMFSCGKCKSKKCTYTQLQTRSADEPMTTFVYC--MACGNRWK 293
>gi|289596628|ref|YP_003483324.1| transcription termination factor Tfs [Aciduliprofundum boonei T469]
gi|289534415|gb|ADD08762.1| transcription termination factor Tfs [Aciduliprofundum boonei T469]
Length = 103
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H A++M QTR+ADEP T FY C KCG RWRE
Sbjct: 65 CPKCGHAGAHWMLQQTRAADEPETRFYIC--PKCGHRWRE 102
>gi|395326429|gb|EJF58839.1| DNA-directed RNA polymerase I kDa polypeptide [Dichomitus squalens
LYAD-421 SS1]
Length = 126
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AA E++ EKCP+C H AY + Q RSADE T FY C ++C F WR
Sbjct: 75 AANEDLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTC--VRCKFGWR 123
>gi|336121142|ref|YP_004575917.1| transcription termination factor Tfs [Methanothermococcus
okinawensis IH1]
gi|334855663|gb|AEH06139.1| transcription termination factor Tfs [Methanothermococcus
okinawensis IH1]
Length = 105
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT +CPKC + AY+ QTR ADEP T FYKC KCG+ WRE
Sbjct: 61 TTRIECPKCGNMEAYWWLQQTRCADEPETRFYKC--TKCGYTWRE 103
>gi|50310967|ref|XP_455506.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49644642|emb|CAG98214.1| KLLA0F09361p [Kluyveromyces lactis]
Length = 292
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T +C KC+ + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 241 GATVERSVTDRFQCGKCKQRKVSYYQLQTRSADEPLTTFCTCEN--CGNRWK 290
>gi|358387656|gb|EHK25250.1| hypothetical protein TRIVIDRAFT_81951 [Trichoderma virens Gv29-8]
Length = 304
Score = 49.7 bits (117), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 265 ECGKCKKKKVSYTQAQTRSADEPMTTFCECMN--CGNRWK 302
>gi|333910679|ref|YP_004484412.1| transcription termination factor Tfs [Methanotorris igneus Kol 5]
gi|333751268|gb|AEF96347.1| transcription termination factor Tfs [Methanotorris igneus Kol 5]
Length = 105
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 36/65 (55%), Gaps = 5/65 (7%)
Query: 11 KEIDHVMGGAAAWENVDT---TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
++I+H E VDT T +CPKC H A + QTR ADEP T FYKC KCG
Sbjct: 41 EKIEHKQPEVTVIEQVDTLPTTRVECPKCGHMEASWWLQQTRCADEPETRFYKC--KKCG 98
Query: 68 FRWRE 72
WRE
Sbjct: 99 HTWRE 103
>gi|341581249|ref|YP_004761741.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
gi|340808907|gb|AEK72064.1| Transcription elongation factor S (TFS_arch) [Thermococcus sp.
4557]
Length = 110
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 2/47 (4%)
Query: 25 NVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ TT+ CPKC + AY+ ++QTR+ DEP T FYKC KCG WR
Sbjct: 63 TLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKCGHVWR 107
>gi|390962022|ref|YP_006425856.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
gi|390520330|gb|AFL96062.1| transcription elongation factor S (TFS_arch) [Thermococcus sp. CL1]
Length = 110
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ + TT+ CPKC + AY+ ++QTR+ DEP T FYKC KCG WR
Sbjct: 62 KTLPTTKVTCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--TKCGHVWR 107
>gi|337284503|ref|YP_004623977.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
gi|334900437|gb|AEH24705.1| DNA-directed RNA polymerase subunit M [Pyrococcus yayanosii CH1]
Length = 110
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K + + V+ + T + CPKC H AY+ ++QTR+ DEP T F+KC +C
Sbjct: 45 EVKHRPDEGVIVVEQELSTLPTAKVTCPKCGHNEAYWWELQTRAGDEPSTIFFKC--KRC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYVWR 107
>gi|291002057|ref|XP_002683595.1| predicted protein [Naegleria gruberi]
gi|284097224|gb|EFC50851.1| predicted protein [Naegleria gruberi]
Length = 143
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/42 (54%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E CPKC HP+ F +Q RSADE T FY+C +KCGF+ R
Sbjct: 101 NEPCPKCHHPQRKFFTMQLRSADEGQTVFYEC--LKCGFKER 140
>gi|346321715|gb|EGX91314.1| transcription elongation factor s-ii [Cordyceps militaris CM01]
Length = 303
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 265 CGKCKQKKVSYTQAQTRSADEPMTTFCECMN--CGNRWK 301
>gi|84998998|ref|XP_954220.1| transcription elongation factor [Theileria annulata]
gi|65305218|emb|CAI73543.1| transcription elongation factor, putative [Theileria annulata]
Length = 418
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C N C RW+
Sbjct: 380 KCNKCNSKITTYYQLQTRSSDEPMTTFVTCLN--CNNRWK 417
>gi|14324969|dbj|BAB59895.1| transcription factor [TFIIS/RPB9] [Thermoplasma volcanium GSS1]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP+C H A ++ QTRSADEP T FY C +CG+RWRE
Sbjct: 68 CPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 105
>gi|340373919|ref|XP_003385487.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Amphimedon queenslandica]
Length = 130
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + CPKC+H A F Q Q++ A+E M +Y CC+ CG RW E
Sbjct: 86 TKDHPCPKCDHRDAVFFQSQSKKAEEEMKLYYVCCSEGCGHRWTE 130
>gi|396472195|ref|XP_003839048.1| similar to transcription elongation factor s-ii [Leptosphaeria
maculans JN3]
gi|312215617|emb|CBX95569.1| similar to transcription elongation factor s-ii [Leptosphaeria
maculans JN3]
Length = 304
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
++ + I+ M A E + E +C KC+ + Q QTRSADEPMTTF +C N CG
Sbjct: 243 LEQENINQAM--VAQVEKAISKEFQCGKCKQKMVSYSQAQTRSADEPMTTFCECMN--CG 298
Query: 68 FRWR 71
RW+
Sbjct: 299 NRWK 302
>gi|384246149|gb|EIE19640.1| hypothetical protein COCSUDRAFT_25684 [Coccomyxa subellipsoidea
C-169]
Length = 127
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 30/44 (68%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + +C KC+ + + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 84 TDQFQCGKCKQRKCQYYQMQTRSADEPMTTFVTCTN--CGNRWK 125
>gi|41615166|ref|NP_963664.1| hypothetical protein NEQ377 [Nanoarchaeum equitans Kin4-M]
gi|40068890|gb|AAR39225.1| NEQ377 [Nanoarchaeum equitans Kin4-M]
Length = 106
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
KCPKC + +QTR++DE T FYKC +KCG+ WRE
Sbjct: 66 KCPKCSSEEVVYFTLQTRASDEAETIFYKC--LKCGYTWRE 104
>gi|400603045|gb|EJP70643.1| transcription elongation factor S-II [Beauveria bassiana ARSEF
2860]
Length = 309
Score = 49.3 bits (116), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 270 ECGKCKKKQVSYTQAQTRSADEPMTTFCECMN--CGNRWK 307
>gi|346970562|gb|EGY14014.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium dahliae
VdLs.17]
Length = 122
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+E CPKC Y+ Q+Q R ADE TTFY C KCG RW +
Sbjct: 81 DETCPKCGREEVYYTQLQLRGADEGSTTFYTC---KCGNRWSQ 120
>gi|432328900|ref|YP_007247044.1| transcription factor S, archaeal [Aciduliprofundum sp. MAR08-339]
gi|432135609|gb|AGB04878.1| transcription factor S, archaeal [Aciduliprofundum sp. MAR08-339]
Length = 104
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H A++M QTR+ADEP T FY C KCG RWRE
Sbjct: 66 CPKCGHVGAHWMLQQTRAADEPETRFYIC--PKCGHRWRE 103
>gi|302423150|ref|XP_003009405.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium
albo-atrum VaMs.102]
gi|261352551|gb|EEY14979.1| DNA-directed RNA polymerase I subunit RPA12 [Verticillium
albo-atrum VaMs.102]
Length = 122
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+E CPKC Y+ Q+Q R ADE TTFY C KCG RW +
Sbjct: 81 DETCPKCGREEVYYTQLQLRGADEGSTTFYTC---KCGNRWSQ 120
>gi|66816475|ref|XP_642247.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
gi|60470324|gb|EAL68304.1| RNA polymerase I subunit [Dictyostelium discoideum AX4]
Length = 324
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+EKCP+C H + YF QTRSADE T FY C +KC F++
Sbjct: 282 DEKCPECGHGKMYFKTAQTRSADEGQTIFYDC--VKCSFKF 320
>gi|13541573|ref|NP_111261.1| DNA-directed RNA polymerase subunit M [Thermoplasma volcanium
GSS1]
Length = 100
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/40 (57%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP+C H A ++ QTRSADEP T FY C +CG+RWRE
Sbjct: 62 CPRCHHKGARYVLKQTRSADEPETKFYTC--EECGYRWRE 99
>gi|50287137|ref|XP_445998.1| hypothetical protein [Candida glabrata CBS 138]
gi|49525305|emb|CAG58922.1| unnamed protein product [Candida glabrata]
Length = 128
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC H + +Q RSADE T FY C IKC +++R
Sbjct: 84 TIKEKCPKCGHDEMRYQTLQLRSADEGATVFYTC--IKCNYKYR 125
>gi|14521579|ref|NP_127055.1| DNA-directed RNA polymerase subunit M [Pyrococcus abyssi GE5]
gi|5458798|emb|CAB50285.1| tfs archaeal transcription factor S [Pyrococcus abyssi GE5]
gi|380742189|tpe|CCE70823.1| TPA: DNA-directed RNA polymerase subunit M [Pyrococcus abyssi GE5]
Length = 110
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K K + V+ + + T + CPKC + A++ ++QTR+ DEP T FYKC +C
Sbjct: 45 EVKHKPDEGVIVVEQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFYKC--KRC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYVWR 107
>gi|238589160|ref|XP_002391938.1| hypothetical protein MPER_08559 [Moniliophthora perniciosa FA553]
gi|215457296|gb|EEB92868.1| hypothetical protein MPER_08559 [Moniliophthora perniciosa FA553]
Length = 125
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KIK + +G A + +T +C +C+ + + Q QTRSADEPMTTF C N C
Sbjct: 63 KIKQENFFASLG--AEEQQAETDAFQCGRCKQRKCRYRQAQTRSADEPMTTFVTCTN--C 118
Query: 67 GFRWR 71
G RW+
Sbjct: 119 GNRWK 123
>gi|157124261|ref|XP_001660391.1| DNA-directed RNA polymerase II [Aedes aegypti]
gi|94468684|gb|ABF18191.1| RNA polymerase II subunit 9 [Aedes aegypti]
gi|108882826|gb|EAT47051.1| AAEL001831-PA [Aedes aegypti]
Length = 128
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TEE CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 67 ELTHIVPDVISDPTLPRTEEHACPKCTHREAVFFQAQTRRAEEEMRLYYVCTNPGCCHRW 126
Query: 71 RE 72
E
Sbjct: 127 TE 128
>gi|269864605|ref|XP_002651632.1| hypothetical protein EBI_27619 [Enterocytozoon bieneusi H348]
gi|269865006|ref|XP_002651772.1| hypothetical protein EBI_26915 [Enterocytozoon bieneusi H348]
gi|269865352|ref|XP_002651894.1| hypothetical protein EBI_25970 [Enterocytozoon bieneusi H348]
gi|269865514|ref|XP_002651950.1| hypothetical protein EBI_27040 [Enterocytozoon bieneusi H348]
gi|269865596|ref|XP_002651979.1| hypothetical protein EBI_27543 [Enterocytozoon bieneusi H348]
gi|269865710|ref|XP_002652019.1| hypothetical protein EBI_26800 [Enterocytozoon bieneusi H348]
gi|269866373|ref|XP_002652251.1| hypothetical protein EBI_26777 [Enterocytozoon bieneusi H348]
gi|269866849|ref|XP_002652411.1| hypothetical protein EBI_26281 [Enterocytozoon bieneusi H348]
gi|220062559|gb|EED41644.1| hypothetical protein EBI_26281 [Enterocytozoon bieneusi H348]
gi|220062875|gb|EED41804.1| hypothetical protein EBI_26777 [Enterocytozoon bieneusi H348]
gi|220063308|gb|EED42038.1| hypothetical protein EBI_26800 [Enterocytozoon bieneusi H348]
gi|220063381|gb|EED42077.1| hypothetical protein EBI_27543 [Enterocytozoon bieneusi H348]
gi|220063434|gb|EED42106.1| hypothetical protein EBI_27040 [Enterocytozoon bieneusi H348]
gi|220063681|gb|EED42162.1| hypothetical protein EBI_25970 [Enterocytozoon bieneusi H348]
gi|220063904|gb|EED42283.1| hypothetical protein EBI_26915 [Enterocytozoon bieneusi H348]
gi|220064167|gb|EED42425.1| hypothetical protein EBI_27619 [Enterocytozoon bieneusi H348]
Length = 89
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 7/55 (12%)
Query: 18 GGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
G +E +D CP+C H RA F ++QTRSADE T FY+C + C WR+
Sbjct: 41 GELGNFEAID-----CPRCGHGRALFKEVQTRSADEATTVFYQC--VLCEHNWRQ 88
>gi|403178039|ref|XP_003336480.2| transcription elongation factor S-II [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375173311|gb|EFP92061.2| transcription elongation factor S-II [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 382
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + +T +C +C + + Q+QTRSADEPMTTF C N C RW+
Sbjct: 331 GAGPQQAETDAFRCARCGQRKCTYYQMQTRSADEPMTTFVTCVNCNC--RWK 380
>gi|412992662|emb|CCO18642.1| predicted protein [Bathycoccus prasinos]
Length = 331
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
TT KC KC F Q+QTRSADEPMTTF C N C RW+
Sbjct: 288 TTAFKCGKCGQRACTFYQLQTRSADEPMTTFVTCVN--CENRWK 329
>gi|242398553|ref|YP_002993977.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
gi|242264946|gb|ACS89628.1| DNA-directed RNA polymerase subunit m [Thermococcus sibiricus MM
739]
Length = 108
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
CPKC + AY+ ++QTR+ DEP T FY+C KCG+ WR
Sbjct: 69 CPKCGNDEAYWWELQTRAGDEPSTIFYRC--TKCGYTWR 105
>gi|213406231|ref|XP_002173887.1| transcription elongation factor S-II [Schizosaccharomyces japonicus
yFS275]
gi|212001934|gb|EEB07594.1| transcription elongation factor S-II [Schizosaccharomyces japonicus
yFS275]
Length = 296
Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEPMTTF +C CG RW+
Sbjct: 258 CGKCKQKKVSYFQMQTRSADEPMTTFCEC--TVCGNRWK 294
>gi|171186130|ref|YP_001795049.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
gi|170935342|gb|ACB40603.1| transcription termination factor Tfs [Pyrobaculum neutrophilum
V24Sta]
Length = 110
Score = 48.9 bits (115), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CPKC H AY QTR+ADEP T FY+C KCG WRE
Sbjct: 71 CPKCGHDEAYVWVQQTRAADEPPTRFYRC--TKCGHTWRE 108
>gi|66806555|ref|XP_637000.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|60465415|gb|EAL63500.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 111
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 5 RLKIKPKEIDH-VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
++ ++ K ID V GG AW++ D E +C C + RA ++IQ +P T++Y+C N
Sbjct: 40 KVPLQRKIIDSDVFGGEEAWKSADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKN 99
Query: 64 IKCGFRWRE 72
C +W++
Sbjct: 100 PGCENQWQK 108
>gi|449020026|dbj|BAM83428.1| probable transcription elongation factor S-II [Cyanidioschyzon
merolae strain 10D]
Length = 794
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + +C KC + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 752 TDQFRCGKCGQRSCTYFQMQTRSADEPMTTFVTCTH--CGNRWK 793
>gi|305662838|ref|YP_003859126.1| transcription termination factor Tfs [Ignisphaera aggregans DSM
17230]
gi|304377407|gb|ADM27246.1| transcription termination factor Tfs [Ignisphaera aggregans DSM
17230]
Length = 112
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+CPKC Y Q+QTR+ADEP TTFYKC CG WRE
Sbjct: 73 RCPKCGSEEVYAWQMQTRAADEPPTTFYKC--PSCGHTWRE 111
>gi|15922591|ref|NP_378260.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus tokodaii
str. 7]
gi|15623381|dbj|BAB67369.1| archaeal transcription factor S [Sulfolobus tokodaii str. 7]
Length = 112
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 39/76 (51%), Gaps = 9/76 (11%)
Query: 4 GRLKIKP------KEIDHVMGGAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMT 56
G +KIK KE V+ G A T+ CP C + AYF +QTR ADEP T
Sbjct: 37 GSMKIKTVVKHSIKEKTLVVDGDAPPAGAQITKGVTCPACGNDEAYFWILQTRRADEPPT 96
Query: 57 TFYKCCNIKCGFRWRE 72
FYKC KCG WRE
Sbjct: 97 RFYKC--TKCGKVWRE 110
>gi|345570642|gb|EGX53463.1| hypothetical protein AOL_s00006g329 [Arthrobotrys oligospora ATCC
24927]
Length = 120
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 15 HVMGGAAAWENVDTTEE---KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
H G A E+V E CPKCE+P F +Q RSADE T FY C N CG+R+
Sbjct: 60 HSTGQNLAPEDVGGQAEIDTPCPKCENPVMKFTTVQLRSADEGATVFYNCPN--CGYRYN 117
>gi|395329637|gb|EJF62023.1| transcription elongation factor [Dichomitus squalens LYAD-421 SS1]
Length = 300
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KIK + + +G A + +T +CP+C+ + + Q QTRSADEPMTTF C C
Sbjct: 238 KIKEENLFKTLG--AGEQEAETDAFQCPRCKQRKCRYRQQQTRSADEPMTTFVTC--TVC 293
Query: 67 GFRWR 71
RW+
Sbjct: 294 KNRWK 298
>gi|66735410|gb|AAY53887.1| DNA-dependent RNA polymerase subunit M [Thermococcus thioreducens]
Length = 110
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 32/48 (66%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ + TT+ CPKC + AY+ ++QTR+ DEP T FY+C KCG WR
Sbjct: 62 KTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYRC--TKCGHTWR 107
>gi|294948622|ref|XP_002785812.1| translation elongation factor G, putative [Perkinsus marinus ATCC
50983]
gi|239899920|gb|EER17608.1| translation elongation factor G, putative [Perkinsus marinus ATCC
50983]
Length = 899
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+E+CPKC++PR F Q RSADE T FY+C +WR
Sbjct: 142 DEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKFGIVSQWR 183
>gi|315230104|ref|YP_004070540.1| transcription factor [Thermococcus barophilus MP]
gi|315183132|gb|ADT83317.1| transcription factor [Thermococcus barophilus MP]
Length = 109
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
CPKC + AY+ ++QTR+ DEP T FY+C KCG+ WR
Sbjct: 70 CPKCGNDEAYWWELQTRAGDEPSTIFYRC--TKCGYTWR 106
>gi|146423462|ref|XP_001487659.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 213
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 175 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 211
>gi|15897234|ref|NP_341839.1| DNA-directed RNA polymerase subunit M [Sulfolobus solfataricus P2]
gi|384433745|ref|YP_005643103.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
gi|13813433|gb|AAK40629.1| DNA-directed RNA polymerase, subunit M (rpoM-1) [Sulfolobus
solfataricus P2]
gi|261601899|gb|ACX91502.1| transcription termination factor Tfs [Sulfolobus solfataricus 98/2]
Length = 114
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ AYF +QTR ADEP T FYKC KCG WRE
Sbjct: 75 CPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 112
>gi|190345115|gb|EDK36938.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 213
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 175 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 211
>gi|91084187|ref|XP_967086.1| PREDICTED: similar to GA17176-PA [Tribolium castaneum]
gi|270008778|gb|EFA05226.1| hypothetical protein TcasGA2_TC015369 [Tribolium castaneum]
Length = 130
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CP+C H A F Q QTR A+E M +Y C N C RW
Sbjct: 69 ELTHIVPDVISDPTLPRTEDHHCPECNHREAVFFQAQTRRAEEEMRLYYVCTNPMCAHRW 128
Query: 71 RE 72
E
Sbjct: 129 TE 130
>gi|294889433|ref|XP_002772810.1| translation elongation factor g, putative [Perkinsus marinus ATCC
50983]
gi|239877360|gb|EER04626.1| translation elongation factor g, putative [Perkinsus marinus ATCC
50983]
Length = 838
Score = 48.9 bits (115), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+E+CPKC++PR F Q RSADE T FY+C +WR
Sbjct: 142 DEECPKCKNPRMAFWTQQLRSADEGQTVFYECQKFGIVSQWR 183
>gi|226504526|ref|NP_001149284.1| transcription elongation factor A protein 2 [Zea mays]
gi|195626030|gb|ACG34845.1| transcription elongation factor A protein 2 [Zea mays]
Length = 368
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
++IK K + GAA T + KC +C + + Q+QTRSADEPMTTF C N
Sbjct: 305 MQIKEKALFDCERGAAP--KATTDQFKCARCGQRKTTYYQLQTRSADEPMTTFVTCVN-- 360
Query: 66 CGFRWR 71
C W+
Sbjct: 361 CNNHWK 366
>gi|225710958|gb|ACO11325.1| Transcription elongation factor S-II [Caligus rogercresseyi]
Length = 299
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + QIQTRSADEPM TF C +CG RW+
Sbjct: 260 KCGKCKQSNCTYNQIQTRSADEPMATFVLCN--ECGNRWK 297
>gi|195622302|gb|ACG32981.1| transcription elongation factor A protein 2 [Zea mays]
gi|223947497|gb|ACN27832.1| unknown [Zea mays]
gi|413932648|gb|AFW67199.1| transcription elongation factor A protein 2 [Zea mays]
Length = 368
Score = 48.5 bits (114), Expect = 4e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
++IK K + GAA T + KC +C + + Q+QTRSADEPMTTF C N
Sbjct: 305 MQIKEKALFDCERGAAP--KATTDQFKCARCGQRKTTYYQLQTRSADEPMTTFVTCVN-- 360
Query: 66 CGFRWR 71
C W+
Sbjct: 361 CNNHWK 366
>gi|242247091|ref|NP_001156084.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide-like
[Acyrthosiphon pisum]
gi|328696851|ref|XP_003240150.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Acyrthosiphon pisum]
gi|239788749|dbj|BAH71040.1| ACYPI001520 [Acyrthosiphon pisum]
gi|239789569|dbj|BAH71400.1| ACYPI001520 [Acyrthosiphon pisum]
Length = 130
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 11 KEIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
E+ H++ + + +E+ CPKC+H + F Q QTR A+E M +Y C N C R
Sbjct: 65 NELTHIVSDVTSDPTLPRSEDHPCPKCKHRESVFFQAQTRRAEEEMRLYYVCTNPHCIHR 124
Query: 70 WRE 72
W E
Sbjct: 125 WTE 127
>gi|284998325|ref|YP_003420093.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
gi|284446221|gb|ADB87723.1| transcription factor S [Sulfolobus islandicus L.D.8.5]
Length = 111
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ AYF +QTR ADEP T FYKC KCG WRE
Sbjct: 72 CPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 109
>gi|284174479|ref|ZP_06388448.1| putative DNA-directed RNA polymerase subunit M [Sulfolobus
solfataricus 98/2]
Length = 111
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ AYF +QTR ADEP T FYKC KCG WRE
Sbjct: 72 CPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 109
>gi|443710452|gb|ELU04705.1| hypothetical protein CAPTEDRAFT_155099 [Capitella teleta]
Length = 309
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 32/58 (55%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M E T KC +C R + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 255 DHQMAQQGGTE---TDFFKCGRCGKRRCQYNQVQTRSADEPMTTFVLC--VSCGNRWK 307
>gi|322694712|gb|EFY86534.1| transcription elongation factor s-ii [Metarhizium acridum CQMa 102]
Length = 303
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C +C+ + + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 262 CSRCKMKKVSYTQAQTRSADEPMTTFCECMN--CGHRWK 298
>gi|227828074|ref|YP_002829854.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|227830811|ref|YP_002832591.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|229579707|ref|YP_002838106.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|229585343|ref|YP_002843845.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238620304|ref|YP_002915130.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|385773782|ref|YP_005646349.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
gi|385776417|ref|YP_005648985.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|227457259|gb|ACP35946.1| transcription factor S [Sulfolobus islandicus L.S.2.15]
gi|227459870|gb|ACP38556.1| transcription termination factor Tfs [Sulfolobus islandicus
M.14.25]
gi|228010422|gb|ACP46184.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.G.57.14]
gi|228020393|gb|ACP55800.1| transcription termination factor Tfs [Sulfolobus islandicus
M.16.27]
gi|238381374|gb|ACR42462.1| transcription termination factor Tfs [Sulfolobus islandicus M.16.4]
gi|323475165|gb|ADX85771.1| transcription termination factor Tfs [Sulfolobus islandicus REY15A]
gi|323477897|gb|ADX83135.1| transcription termination factor Tfs [Sulfolobus islandicus
HVE10/4]
Length = 111
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ AYF +QTR ADEP T FYKC KCG WRE
Sbjct: 72 CPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 109
>gi|229581627|ref|YP_002840026.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
gi|228012343|gb|ACP48104.1| transcription termination factor Tfs [Sulfolobus islandicus
Y.N.15.51]
Length = 111
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ AYF +QTR ADEP T FYKC KCG WRE
Sbjct: 72 CPSCKNDEAYFWILQTRRADEPPTRFYKC--TKCGKVWRE 109
>gi|19114535|ref|NP_593623.1| transcription elongation factor TFIIS [Schizosaccharomyces pombe
972h-]
gi|1351227|sp|P49373.1|TFS2_SCHPO RecName: Full=Transcription elongation factor S-II; AltName:
Full=TFIIS
gi|924620|gb|AAA74048.1| transcription elongation factor TFIIS [Schizosaccharomyces pombe]
gi|12038919|emb|CAC19733.1| transcription elongation factor TFIIS [Schizosaccharomyces pombe]
Length = 293
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEPMTTF +C CG RW+
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCEC--TVCGNRWK 291
>gi|449550537|gb|EMD41501.1| hypothetical protein CERSUDRAFT_61506 [Ceriporiopsis subvermispora
B]
Length = 126
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 22 AWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E + EKCP+C H AY + Q RSADE T FY C +KC F WR
Sbjct: 76 ANEGLLKVTEKCPECGHMEAYSKEAQLRSADEGSTIFYTC--VKCKFGWR 123
>gi|322511107|gb|ADX06420.1| putative transcription elongation factor TFIIS_C domain-containing
protein [Organic Lake phycodnavirus 2]
Length = 168
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
I ++I H+ T + KC KC+ + Q+QTRSADEPMTTF C I CG
Sbjct: 106 ITEEKITHLDNKYFPKIKASTDKFKCGKCKSKECTYYQLQTRSADEPMTTFVTC--ISCG 163
Query: 68 FRWR 71
RW+
Sbjct: 164 NRWK 167
>gi|323510295|dbj|BAJ78041.1| cgd3_2550 [Cryptosporidium parvum]
Length = 246
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
+E CP+C H A+F Q Q RSADE T Y+CC KC R
Sbjct: 204 QEICPECSHNEAFFTQFQARSADEGTTVMYECC--KCQHR 241
>gi|226498648|ref|NP_001142260.1| uncharacterized protein LOC100274429 [Zea mays]
gi|194688540|gb|ACF78354.1| unknown [Zea mays]
gi|194707892|gb|ACF88030.1| unknown [Zea mays]
Length = 367
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L+IK K + GAA T + KC +C + + Q+QTRSADEPMTTF C N
Sbjct: 304 LQIKEKALFDCERGAAP--KATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN-- 359
Query: 66 CGFRWR 71
C W+
Sbjct: 360 CNNHWK 365
>gi|354485610|ref|XP_003504976.1| PREDICTED: transcription elongation factor A protein 3-like
[Cricetulus griseus]
Length = 362
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + Q+QTRSADEPMTTF C +CG RW+E
Sbjct: 318 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWKE 356
>gi|156564607|gb|ABU80627.1| transcription elongation factor TFIIS [Artemia franciscana]
Length = 108
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 58 AVVEGTQTDLLKCGKCHKRNCTYNQLQTRSADEPMTTFVLCN--ECGHRWK 106
>gi|246798|gb|AAB21674.1| RNA polymerase II 15-kda subunit [Drosophila melanogaster]
Length = 129
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F + QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFKAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|409095443|ref|ZP_11215467.1| transcription elongation factor S (TFS_arch) [Thermococcus zilligii
AN1]
Length = 110
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ K + ++ + + TT+ CPKC + AY+ ++QTR+ DEP T FY+C +C
Sbjct: 45 KVEHKPNEEIVVIEQDVKTLPTTKVTCPKCGNDTAYWWELQTRAGDEPSTIFYRC--TRC 102
Query: 67 GFRWR 71
G WR
Sbjct: 103 GHVWR 107
>gi|326917624|ref|XP_003205096.1| PREDICTED: transcription elongation factor A protein 1-like
[Meleagris gallopavo]
Length = 335
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C KC+ + Q+QTRSADEPMTTF C +CG RW++
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWKQ 303
>gi|410671532|ref|YP_006923903.1| DNA-directed RNA polymerase, subunit M [Methanolobus psychrophilus
R15]
gi|409170660|gb|AFV24535.1| DNA-directed RNA polymerase, subunit M [Methanolobus psychrophilus
R15]
Length = 106
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 42/83 (50%), Gaps = 14/83 (16%)
Query: 2 RCGRLKIKPKEIDHVMGGAAAWE--------NVD----TTEEKCPKCEHPRAYFMQIQTR 49
+CG +K K + + +M AA E N D TT +C +C H AY+ Q R
Sbjct: 24 KCGYVKEKETDQESLMSKAARSEREVTVLEGNTDQGLPTTSVRCDECGHNVAYWWLRQLR 83
Query: 50 SADEPMTTFYKCCNIKCGFRWRE 72
SADE T F+KC KCG WRE
Sbjct: 84 SADESETRFFKC--TKCGLTWRE 104
>gi|374634249|ref|ZP_09706613.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
gi|373523014|gb|EHP67990.1| DNA-directed RNA polymerase, subunit M/transcription elongation
factor TFIIS [Metallosphaera yellowstonensis MK1]
Length = 100
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ YF +QTR+ADEP T FY+C KCG WRE
Sbjct: 61 CPSCKNDEVYFWMVQTRAADEPPTRFYRC--TKCGKTWRE 98
>gi|226442714|ref|NP_001139934.1| transcription elongation factor A protein 1 [Salmo salar]
gi|221220186|gb|ACM08754.1| Transcription elongation factor A protein 1 [Salmo salar]
Length = 311
Score = 48.5 bits (114), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ R + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 273 CGKCKKKRCTYTQVQTRSADEPMTTFVFCND--CGNRWK 309
>gi|402218151|gb|EJT98229.1| transcription elongation factor [Dacryopinax sp. DJM-731 SS1]
Length = 311
Score = 48.5 bits (114), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/45 (51%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+T KC +C + + Q QTRSADEPMTTF C N CG RW+
Sbjct: 267 ETDAFKCFRCGLRKTRYTQAQTRSADEPMTTFVTCVN--CGNRWK 309
>gi|388254857|gb|AFK24971.1| putative transcription termination factor TFIIS [uncultured
archaeon]
Length = 89
Score = 48.5 bits (114), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%), Gaps = 5/51 (9%)
Query: 24 ENVD---TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E+VD TT +CP+C++ A++ +QTRSADE T FY+C KCG WR
Sbjct: 38 ESVDALPTTSIECPQCKNGMAFWWMLQTRSADEATTQFYRC--TKCGHTWR 86
>gi|375083639|ref|ZP_09730657.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
gi|374741639|gb|EHR78059.1| DNA-directed RNA polymerase subunit m [Thermococcus litoralis DSM
5473]
Length = 108
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
CPKC + AY+ ++QTR+ DEP T FY+C KCG+ WR
Sbjct: 69 CPKCGNDEAYWWEMQTRAGDEPSTIFYRC--TKCGYTWR 105
>gi|260797171|ref|XP_002593577.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
gi|229278803|gb|EEN49588.1| hypothetical protein BRAFLDRAFT_88149 [Branchiostoma floridae]
Length = 588
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
KC KC+ + Q+QTRSADEPMTTF C +CG RW+E
Sbjct: 213 KCGKCKKRNVTYNQVQTRSADEPMTTFCYCN--ECGNRWKE 251
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 462 KCGKCKKRNVTYNQVQTRSADEPMTTFCYCN--ECGNRWK 499
>gi|361130396|gb|EHL02209.1| putative Transcription elongation factor S-II [Glarea lozoyensis
74030]
Length = 411
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C +C + + Q QTRSADEPMTTF +C CG RW++
Sbjct: 261 RCGRCGQKKVSYSQAQTRSADEPMTTFCEC--TVCGNRWKQ 299
>gi|401395411|ref|XP_003879596.1| putative transcription elongation factor TFIIS [Neospora caninum
Liverpool]
gi|325114003|emb|CBZ49561.1| putative transcription elongation factor TFIIS [Neospora caninum
Liverpool]
Length = 418
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
D + C KC + + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 375 DGGQFPCFKCRTTKTVYFQMQTRSSDEPMTTFVTC--LECGNRWK 417
>gi|237841743|ref|XP_002370169.1| transcription elongation factor TFIIS, putative [Toxoplasma gondii
ME49]
gi|95007190|emb|CAJ20411.1| transcription elongation factor s-II, putative [Toxoplasma gondii
RH]
gi|211967833|gb|EEB03029.1| transcription elongation factor TFIIS, putative [Toxoplasma gondii
ME49]
gi|221482635|gb|EEE20973.1| transcription elongation factor, putative [Toxoplasma gondii GT1]
gi|221503171|gb|EEE28877.1| transcription elongation factor, putative [Toxoplasma gondii VEG]
Length = 418
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 381 CFKCRTTKTVYFQMQTRSSDEPMTTFVTC--LECGNRWK 417
>gi|389637312|ref|XP_003716294.1| transcription elongation factor S-II [Magnaporthe oryzae 70-15]
gi|351642113|gb|EHA49975.1| transcription elongation factor S-II [Magnaporthe oryzae 70-15]
Length = 304
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 265 ECSKCKQKKVSYTQAQTRSADEPMTTFCEC--TVCGNRWK 302
>gi|406607842|emb|CCH40780.1| Transcription elongation factor [Wickerhamomyces ciferrii]
Length = 240
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 189 GATQERAVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEN--CGNRWK 238
>gi|212223973|ref|YP_002307209.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
gi|212008930|gb|ACJ16312.1| DNA-directed RNA polymerase subunit M [Thermococcus onnurineus NA1]
Length = 110
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
CPKC + AY+ ++QTR+ DEP T FYKC KCG WR
Sbjct: 71 CPKCGNDEAYWWELQTRAGDEPSTIFYKC--TKCGHVWR 107
>gi|156082914|ref|XP_001608941.1| transcription factor S-II (TFIIS)and transcription factor S-II
(TFIIS) central domain containing protein [Babesia bovis
T2Bo]
gi|154796191|gb|EDO05373.1| transcription factor S-II (TFIIS)and transcription factor S-II
(TFIIS) central domain containing protein [Babesia
bovis]
Length = 302
Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++C RW+
Sbjct: 264 KCLKCHSMETVYYQLQTRSSDEPMTTFVTC--LECNNRWK 301
>gi|225716628|gb|ACO14160.1| Transcription elongation factor A protein 1 [Esox lucius]
Length = 181
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 28/39 (71%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ R + Q+QTRSADEPMTTF C ++CG RW+
Sbjct: 143 CGKCKKKRCTYTQVQTRSADEPMTTFVFC--MECGNRWK 179
>gi|299116337|emb|CBN76141.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 115
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
T EE CPKC HP+ F +Q RSADE T FY+C + C ++
Sbjct: 69 TVEEACPKCGHPKMEFYTMQLRSADEGQTVFYECLSKACKHKY 111
>gi|440467322|gb|ELQ36551.1| transcription elongation factor S-II [Magnaporthe oryzae Y34]
Length = 306
Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 265 ECSKCKQKKVSYTQAQTRSADEPMTTFCEC--TVCGNRWK 302
>gi|322510696|gb|ADX06010.1| putative transcription factor TFIIS_C family protein [Organic Lake
phycodnavirus 1]
Length = 168
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC KC+ + Q+QTRSADEPMTTF C I CG RW+
Sbjct: 126 TDKFKCGKCKSKECTYYQLQTRSADEPMTTFVTC--ISCGNRWK 167
>gi|45198935|ref|NP_985964.1| AFR417Wp [Ashbya gossypii ATCC 10895]
gi|44984964|gb|AAS53788.1| AFR417Wp [Ashbya gossypii ATCC 10895]
gi|374109194|gb|AEY98100.1| FAFR417Wp [Ashbya gossypii FDAG1]
Length = 125
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 23 WENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E+ T EKCP+C H + +Q RSADE T FY C CG+R+R
Sbjct: 76 LEDGATIREKCPQCGHDEMQYHTLQLRSADEGATVFYTC--TSCGYRFR 122
>gi|440793835|gb|ELR15006.1| transcription factor SII (TFIIS) domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 145
Score = 47.8 bits (112), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+EKCPKC H + YF +Q RS DE T FY+C +KC +++ +
Sbjct: 103 DEKCPKCGHGKMYFYTMQLRSVDEGSTVFYEC--VKCAYKFSQ 143
>gi|156541048|ref|XP_001600804.1| PREDICTED: transcription elongation factor S-II-like [Nasonia
vitripennis]
Length = 312
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 273 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 310
>gi|121705046|ref|XP_001270786.1| transcription elongation factor S-II [Aspergillus clavatus NRRL 1]
gi|119398932|gb|EAW09360.1| transcription elongation factor S-II [Aspergillus clavatus NRRL 1]
Length = 304
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 243 KIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMN--C 298
Query: 67 GFRWRE 72
G WR+
Sbjct: 299 GKSWRQ 304
>gi|401825647|ref|XP_003886918.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
gi|392998075|gb|AFM97937.1| DNA-directed RNA polymerase subunit M [Encephalitozoon hellem ATCC
50504]
Length = 104
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
+ PK+ D ++ + V +KC +C F+++QTRSADEPMT FYKC I+C
Sbjct: 43 MTPKKSDGLIDEDENLKFVSKCGKKC-ECGSEEVSFVELQTRSADEPMTIFYKC--IRCK 99
Query: 68 FRWRE 72
WRE
Sbjct: 100 KVWRE 104
>gi|194708758|gb|ACF88463.1| unknown [Zea mays]
Length = 376
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 28/65 (43%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L+IK K + GAA T + KC +C + + Q+QTRSADEPMTTF C N
Sbjct: 304 LQIKEKALFDCERGAAP--KATTDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN-- 359
Query: 66 CGFRW 70
C W
Sbjct: 360 CNNHW 364
>gi|169602463|ref|XP_001794653.1| hypothetical protein SNOG_04233 [Phaeosphaeria nodorum SN15]
gi|111066873|gb|EAT87993.1| hypothetical protein SNOG_04233 [Phaeosphaeria nodorum SN15]
Length = 301
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ + ++ M A E + E +C KC+ + Q QTRSADEPMTTF +C N C
Sbjct: 239 KLEKENMNQAM--VAQVEKSISKEFQCGKCKKKMVSYSQAQTRSADEPMTTFCECMN--C 294
Query: 67 GFRWR 71
G RW+
Sbjct: 295 GNRWK 299
>gi|448420369|ref|ZP_21581116.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
gi|445673520|gb|ELZ26080.1| DNA-directed RNA polymerase, subunit m [Halosarcina pallida JCM
14848]
Length = 107
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT KCP+C H RA + Q RSADE T F+ C ++CG +WRE
Sbjct: 62 TTTVKCPECGHDRARYEMKQIRSADESETRFFTC--VECGHKWRE 104
>gi|302683244|ref|XP_003031303.1| hypothetical protein SCHCODRAFT_56755 [Schizophyllum commune H4-8]
gi|300104995|gb|EFI96400.1| hypothetical protein SCHCODRAFT_56755 [Schizophyllum commune H4-8]
Length = 286
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + I +G AA + +T +C +C+ + + Q QTRSADEPMTTF C C
Sbjct: 224 KIREQTIHESLG--AAEQEAETDAFQCGRCKQRKCRYRQAQTRSADEPMTTFVTC--TVC 279
Query: 67 GFRWR 71
RW+
Sbjct: 280 NNRWK 284
>gi|119492710|ref|XP_001263674.1| transcription elongation factor S-II [Neosartorya fischeri NRRL
181]
gi|119411834|gb|EAW21777.1| transcription elongation factor S-II [Neosartorya fischeri NRRL
181]
Length = 304
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 243 KIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMN--C 298
Query: 67 GFRWRE 72
G WR+
Sbjct: 299 GKSWRQ 304
>gi|391342952|ref|XP_003745779.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Metaseiulus occidentalis]
Length = 126
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E CPKC H + F Q Q+R A++ M +Y CCN C RW E
Sbjct: 82 TEEHPCPKCGHRESVFFQAQSRRAEDEMRLYYVCCNQGCTHRWTE 126
>gi|391337967|ref|XP_003743335.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Metaseiulus occidentalis]
Length = 126
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E CPKC H + F Q Q+R A++ M +Y CCN C RW E
Sbjct: 82 TEEHPCPKCGHRESVFFQAQSRRAEDEMRLYYVCCNQGCTHRWTE 126
>gi|320164226|gb|EFW41125.1| transcription elongation factor A [Capsaspora owczarzaki ATCC
30864]
Length = 433
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 22/45 (48%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + +C KC A + Q+QTRS+DEPMTTF CN+ CG W++
Sbjct: 263 TDQLRCGKCGKRDASYFQLQTRSSDEPMTTFVT-CNV-CGHNWKD 305
>gi|294883920|ref|XP_002771106.1| transcription elongation factor SII, putative [Perkinsus marinus
ATCC 50983]
gi|239874344|gb|EER02922.1| transcription elongation factor SII, putative [Perkinsus marinus
ATCC 50983]
Length = 308
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC + + Q+QTRS+DEPMTTF C N CG +W+
Sbjct: 269 QCGKCRKSQTTYFQMQTRSSDEPMTTFVTCLN--CGNKWK 306
>gi|195338531|ref|XP_002035878.1| GM14545 [Drosophila sechellia]
gi|194129758|gb|EDW51801.1| GM14545 [Drosophila sechellia]
Length = 311
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 245 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 302
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 303 ECGNRWK 309
>gi|320588310|gb|EFX00779.1| transcription elongation factor s 2 [Grosmannia clavigera kw1407]
Length = 332
Score = 47.8 bits (112), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 294 CGKCKQRKVSYTQAQTRSADEPMTTFCEC--TVCGHRWK 330
>gi|147901281|ref|NP_001089046.1| transcription elongation factor A (SII), 1 [Xenopus laevis]
gi|1325972|emb|CAA66255.1| TFIIS elongation factor [Xenopus laevis]
gi|1389556|dbj|BAA11672.1| transcriptional factor [Xenopus laevis]
gi|47122876|gb|AAH70555.1| LOC594866 protein [Xenopus laevis]
Length = 303
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 265 CGKCKKKNCTYTQVQTRSADEPMTTFVFCNN--CGNRWK 301
>gi|194857365|ref|XP_001968937.1| GG24225 [Drosophila erecta]
gi|190660804|gb|EDV57996.1| GG24225 [Drosophila erecta]
Length = 313
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 247 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 304
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 305 ECGNRWK 311
>gi|322712025|gb|EFZ03598.1| transcription elongation factor S-II [Metarhizium anisopliae ARSEF
23]
Length = 300
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C +C+ + + Q QTRSADEPMTTF +C N CG RW+
Sbjct: 262 CGRCKMKKVSYTQAQTRSADEPMTTFCECMN--CGHRWK 298
>gi|17136888|ref|NP_476967.1| RNA polymerase II elongation factor, isoform A [Drosophila
melanogaster]
gi|442627872|ref|NP_001260457.1| RNA polymerase II elongation factor, isoform B [Drosophila
melanogaster]
gi|135660|sp|P20232.1|TFS2_DROME RecName: Full=Transcription elongation factor S-II; AltName:
Full=RNA polymerase II elongation factor DMS-II;
AltName: Full=TFIIS
gi|7921|emb|CAA37710.1| unnamed protein product [Drosophila melanogaster]
gi|6713129|gb|AAA92864.2| transcription elongation factor [Drosophila melanogaster]
gi|7298202|gb|AAF53436.1| RNA polymerase II elongation factor, isoform A [Drosophila
melanogaster]
gi|15291997|gb|AAK93267.1| LD34766p [Drosophila melanogaster]
gi|220942248|gb|ACL83667.1| TfIIS-PA [synthetic construct]
gi|440213800|gb|AGB92992.1| RNA polymerase II elongation factor, isoform B [Drosophila
melanogaster]
Length = 313
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 247 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 304
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 305 ECGNRWK 311
>gi|399215957|emb|CCF72645.1| unnamed protein product [Babesia microti strain RI]
Length = 300
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRS+DEPMTTF C + C RW+
Sbjct: 263 CFKCKQSKTVYTQVQTRSSDEPMTTFVTC--LVCQNRWK 299
>gi|68482488|ref|XP_714876.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|68482611|ref|XP_714814.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436409|gb|EAK95772.1| hypothetical protein CaO19.9827 [Candida albicans SC5314]
gi|46436474|gb|EAK95836.1| hypothetical protein CaO19.2287 [Candida albicans SC5314]
gi|238883622|gb|EEQ47260.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
albicans WO-1]
Length = 123
Score = 47.8 bits (112), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C N CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTN--CGYRFR 120
>gi|47200172|emb|CAF87330.1| unnamed protein product [Tetraodon nigroviridis]
Length = 255
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 218 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 255
>gi|402086070|gb|EJT80968.1| transcription elongation factor S-II [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 295
Score = 47.8 bits (112), Expect = 9e-04, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 256 ECGKCKQKKVSYTQAQTRSADEPMTTFCEC--TVCGNRWK 293
>gi|19074096|ref|NP_584702.1| TRANSCRIPTION ELONGATION FACTOR SII [Encephalitozoon cuniculi
GB-M1]
gi|19068738|emb|CAD25206.1| TRANSCRIPTION ELONGATION FACTOR SII [Encephalitozoon cuniculi
GB-M1]
gi|449329004|gb|AGE95279.1| transcription elongation factor sII [Encephalitozoon cuniculi]
Length = 257
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ +T KC KC + + Q+QTRS DEPMTTF C +CG +WR
Sbjct: 211 QKAETDIFKCSKCGERKCSYRQLQTRSGDEPMTTFVTC---ECGNKWR 255
>gi|414873584|tpg|DAA52141.1| TPA: hypothetical protein ZEAMMB73_289702 [Zea mays]
Length = 318
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
L+IK K + GAA D + KC +C + + Q+QTRSADEPMTTF C N
Sbjct: 255 LQIKEKALFDCERGAAPKATTD--QFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN-- 310
Query: 66 CGFRWR 71
C W+
Sbjct: 311 CNNHWK 316
>gi|440479245|gb|ELQ60026.1| transcription elongation factor S-II [Magnaporthe oryzae P131]
Length = 275
Score = 47.8 bits (112), Expect = 0.001, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 234 ECSKCKQKKVSYTQAQTRSADEPMTTFCEC--TVCGNRWK 271
>gi|50552628|ref|XP_503724.1| YALI0E09196p [Yarrowia lipolytica]
gi|49649593|emb|CAG79314.1| YALI0E09196p [Yarrowia lipolytica CLIB122]
Length = 295
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 257 CGKCKQKKVSYYQMQTRSADEPLTTFCTCEN--CGTRWK 293
>gi|156359678|ref|XP_001624893.1| predicted protein [Nematostella vectensis]
gi|156211698|gb|EDO32793.1| predicted protein [Nematostella vectensis]
Length = 300
Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC +C + Q+QTRSADEPMTTF C N CG RW+
Sbjct: 261 KCGRCGKRETTYNQLQTRSADEPMTTFVYCMN--CGNRWK 298
>gi|383847733|ref|XP_003699507.1| PREDICTED: transcription elongation factor S-II-like isoform 2
[Megachile rotundata]
Length = 311
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 272 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 309
>gi|195475592|ref|XP_002090068.1| GE19417 [Drosophila yakuba]
gi|194176169|gb|EDW89780.1| GE19417 [Drosophila yakuba]
Length = 313
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 247 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 304
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 305 ECGNRWK 311
>gi|241951826|ref|XP_002418635.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
gi|223641974|emb|CAX43938.1| DNA-directed RNA polymerase I, putative [Candida dubliniensis CD36]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C N CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTN--CGYRFR 120
>gi|71000299|ref|XP_754844.1| transcription elongation factor S-II [Aspergillus fumigatus Af293]
gi|66852481|gb|EAL92806.1| transcription elongation factor S-II [Aspergillus fumigatus Af293]
gi|159127856|gb|EDP52971.1| transcription elongation factor S-II [Aspergillus fumigatus A1163]
Length = 304
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 243 RIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMN--C 298
Query: 67 GFRWRE 72
G WR+
Sbjct: 299 GKSWRQ 304
>gi|241556231|ref|XP_002399649.1| RNA polymerase II subunit, putative [Ixodes scapularis]
gi|215499697|gb|EEC09191.1| RNA polymerase II subunit, putative [Ixodes scapularis]
gi|442752309|gb|JAA68314.1| Putative rna polymerase ii subunit 9 [Ixodes ricinus]
Length = 129
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + CPKC H A F Q Q+R A++ M +Y C N C RW E
Sbjct: 85 TEDHTCPKCSHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129
>gi|429329053|gb|AFZ80812.1| transcription elongation factor S-II, putative [Babesia equi]
Length = 294
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 256 RCFKCKSSDTVYHQMQTRSSDEPMTTFVTC--LKCQNRWK 293
>gi|413948071|gb|AFW80720.1| hypothetical protein ZEAMMB73_218313 [Zea mays]
Length = 500
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C C H A F Q TR +E MT F+ CC+ CG RWRE
Sbjct: 457 TKTVRCNLCGHGEAVFFQAATR-GEEGMTLFFVCCSPDCGHRWRE 500
>gi|328769247|gb|EGF79291.1| hypothetical protein BATDEDRAFT_89614 [Batrachochytrium
dendrobatidis JAM81]
Length = 132
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
T +EKCPKC+ P F Q RSADE T FY C + CG+++
Sbjct: 88 TIQEKCPKCDAPEMVFHTAQLRSADEGQTVFYSC--VVCGYKY 128
>gi|388514187|gb|AFK45155.1| unknown [Medicago truncatula]
Length = 369
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTT+ C N C RW+
Sbjct: 326 TDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCVN--CNNRWK 367
>gi|307110179|gb|EFN58415.1| hypothetical protein CHLNCDRAFT_140360 [Chlorella variabilis]
Length = 146
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
T EE CP+C +P + +Q RSADE T FY+C CG+R+
Sbjct: 100 TVEEPCPRCGNPILEYYTMQLRSADEGQTVFYECPKRDCGYRY 142
>gi|383847731|ref|XP_003699506.1| PREDICTED: transcription elongation factor S-II-like isoform 1
[Megachile rotundata]
Length = 312
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 273 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 310
>gi|363755550|ref|XP_003647990.1| hypothetical protein Ecym_7343 [Eremothecium cymbalariae
DBVPG#7215]
gi|356892026|gb|AET41173.1| hypothetical protein Ecym_7343 [Eremothecium cymbalariae
DBVPG#7215]
Length = 306
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T +C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 255 GATLERSVTDRFQCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 304
>gi|219852680|ref|YP_002467112.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
gi|219546939|gb|ACL17389.1| transcription termination factor Tfs [Methanosphaerula palustris
E1-9c]
Length = 103
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
KCP+CEH A++ Q RSADE F+KC +KCG+ WRE
Sbjct: 63 KCPECEHNLAFWWMRQLRSADESEVRFFKC--VKCGYTWRE 101
>gi|195579326|ref|XP_002079513.1| GD21972 [Drosophila simulans]
gi|194191522|gb|EDX05098.1| GD21972 [Drosophila simulans]
Length = 146
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 80 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC--N 137
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 138 ECGNRWK 144
>gi|195115581|ref|XP_002002335.1| GI17330 [Drosophila mojavensis]
gi|193912910|gb|EDW11777.1| GI17330 [Drosophila mojavensis]
Length = 323
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 257 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 314
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 315 ECGNRWK 321
>gi|374634175|ref|ZP_09706540.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
gi|373523963|gb|EHP68883.1| transcription factor S, archaeal [Metallosphaera yellowstonensis
MK1]
Length = 100
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C++ YF +QTR+ADEP T FY+C +CG WRE
Sbjct: 61 CPSCKNDEVYFWMVQTRAADEPPTRFYRC--TRCGKTWRE 98
>gi|367043846|ref|XP_003652303.1| hypothetical protein THITE_2113636 [Thielavia terrestris NRRL 8126]
gi|346999565|gb|AEO65967.1| hypothetical protein THITE_2113636 [Thielavia terrestris NRRL 8126]
Length = 293
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 254 QCNKCKQKKVSYSQAQTRSADEPMTTFCEC--TVCGHRWK 291
>gi|432908156|ref|XP_004077781.1| PREDICTED: transcription elongation factor A protein 3-like
[Oryzias latipes]
Length = 520
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC + Q+QTRSADEPMTTF C +CG+RW+
Sbjct: 481 QCGKCNKKNCTYNQVQTRSADEPMTTFVLCN--ECGYRWK 518
>gi|225719828|gb|ACO15760.1| Transcription elongation factor A protein 1 [Caligus clemensi]
Length = 296
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + QIQTRSADEPMTTF C CG RW+
Sbjct: 257 KCGKCGKSDCTYNQIQTRSADEPMTTFVLCN--ACGNRWK 294
>gi|332023706|gb|EGI63930.1| Transcription elongation factor S-II [Acromyrmex echinatior]
Length = 288
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 249 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 286
>gi|302789293|ref|XP_002976415.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
gi|302811122|ref|XP_002987251.1| hypothetical protein SELMODRAFT_125489 [Selaginella moellendorffii]
gi|300145148|gb|EFJ11827.1| hypothetical protein SELMODRAFT_125489 [Selaginella moellendorffii]
gi|300156045|gb|EFJ22675.1| hypothetical protein SELMODRAFT_232741 [Selaginella moellendorffii]
Length = 115
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C +C+H A F Q TR +E MT F+ CCN CG+RWR+
Sbjct: 71 TKSVRCVRCKHGEAVFFQATTR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|195437119|ref|XP_002066492.1| GK18066 [Drosophila willistoni]
gi|194162577|gb|EDW77478.1| GK18066 [Drosophila willistoni]
Length = 319
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 253 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 310
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 311 ECGNRWK 317
>gi|125987179|ref|XP_001357352.1| GA17632 [Drosophila pseudoobscura pseudoobscura]
gi|195155927|ref|XP_002018852.1| GL25727 [Drosophila persimilis]
gi|54645683|gb|EAL34421.1| GA17632 [Drosophila pseudoobscura pseudoobscura]
gi|194115005|gb|EDW37048.1| GL25727 [Drosophila persimilis]
Length = 313
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 247 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 304
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 305 ECGNRWK 311
>gi|346466499|gb|AEO33094.1| hypothetical protein [Amblyomma maculatum]
Length = 313
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 274 KCGKCRKNNCTYNQVQTRSADEPMTTFCYCN--ECGHRWK 311
>gi|344233023|gb|EGV64896.1| hypothetical protein CANTEDRAFT_104223 [Candida tenuis ATCC 10573]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC H + +Q RSADE T FY C CG+++R
Sbjct: 79 TIKEKCPKCGHDEMQYHTLQLRSADEGATVFYTC--TSCGYKFR 120
>gi|291387971|ref|XP_002710525.1| PREDICTED: transcription elongation factor A 1 [Oryctolagus
cuniculus]
Length = 329
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|255724982|ref|XP_002547420.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
tropicalis MYA-3404]
gi|240135311|gb|EER34865.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Candida
tropicalis MYA-3404]
Length = 123
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C KCG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTC--TKCGYRFR 120
>gi|194760841|ref|XP_001962641.1| GF15561 [Drosophila ananassae]
gi|190616338|gb|EDV31862.1| GF15561 [Drosophila ananassae]
Length = 315
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 249 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 306
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 307 ECGNRWK 313
>gi|169780530|ref|XP_001824729.1| transcription elongation factor S-II [Aspergillus oryzae RIB40]
gi|238505302|ref|XP_002383880.1| transcription elongation factor S-II [Aspergillus flavus NRRL3357]
gi|83773469|dbj|BAE63596.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220689994|gb|EED46344.1| transcription elongation factor S-II [Aspergillus flavus NRRL3357]
gi|391872022|gb|EIT81165.1| transcription elongation factor TFIIS/Cofactor of enhancer-binding
protein [Aspergillus oryzae 3.042]
Length = 304
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 243 KIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCLN--C 298
Query: 67 GFRWRE 72
G W++
Sbjct: 299 GKSWKQ 304
>gi|116180542|ref|XP_001220120.1| hypothetical protein CHGG_00899 [Chaetomium globosum CBS 148.51]
gi|88185196|gb|EAQ92664.1| hypothetical protein CHGG_00899 [Chaetomium globosum CBS 148.51]
Length = 307
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 268 QCGKCKQKKVSYSQAQTRSADEPMTTFCEC--TVCGHRWK 305
>gi|70953587|ref|XP_745885.1| transcription elongation factor s-ii [Plasmodium chabaudi chabaudi]
gi|56526345|emb|CAH78009.1| transcription elongation factor s-ii, putative [Plasmodium chabaudi
chabaudi]
Length = 364
Score = 47.4 bits (111), Expect = 0.001, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 324 EFQCFKCKGYDTVYQQLQTRSSDEPMTTFVTC--LKCNNRWK 363
>gi|413932649|gb|AFW67200.1| hypothetical protein ZEAMMB73_561219 [Zea mays]
Length = 246
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
++IK K + GAA D + KC +C + + Q+QTRSADEPMTTF C N
Sbjct: 183 MQIKEKALFDCERGAAPKATTD--QFKCARCGQRKTTYYQLQTRSADEPMTTFVTCVN-- 238
Query: 66 CGFRWR 71
C W+
Sbjct: 239 CNNHWK 244
>gi|328872688|gb|EGG21055.1| RNA polymerase I subunit [Dictyostelium fasciculatum]
Length = 264
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
KPK +D A +EKCP+C H + YF QTRSADE T FY C +KC
Sbjct: 209 KPKALDEEEADRGA-----VIDEKCPECGHGKMYFKTAQTRSADEGQTIFYDC--MKCSI 261
Query: 69 RW 70
+
Sbjct: 262 LY 263
>gi|307180955|gb|EFN68743.1| Transcription elongation factor A protein 1 [Camponotus floridanus]
Length = 311
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 272 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 309
>gi|196008337|ref|XP_002114034.1| hypothetical protein TRIADDRAFT_58083 [Trichoplax adhaerens]
gi|190583053|gb|EDV23124.1| hypothetical protein TRIADDRAFT_58083 [Trichoplax adhaerens]
Length = 302
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 252 CGKCHKKNCSYNQMQTRSADEPMTTFVFCH--ECGHRWK 288
>gi|452836512|gb|EME38456.1| hypothetical protein DOTSEDRAFT_75850 [Dothistroma septosporum
NZE10]
Length = 313
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E +T C KC+ R + Q QTRSADEP+TTF +C CG RW+
Sbjct: 263 AVEEKAISTTFTCGKCKQSRVAYSQAQTRSADEPLTTFCECT--MCGHRWK 311
>gi|410987185|ref|XP_003999887.1| PREDICTED: transcription elongation factor A protein 1 [Felis
catus]
Length = 353
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 315 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 351
>gi|290462619|gb|ADD24357.1| Transcription elongation factor S-II [Lepeophtheirus salmonis]
Length = 291
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 23/40 (57%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + QIQTRSADEPMTTF C +CG RW+
Sbjct: 252 KCGKCLKRNCTYNQIQTRSADEPMTTFVLCN--ECGNRWK 289
>gi|388583993|gb|EIM24294.1| transcription elongation factor [Wallemia sebi CBS 633.66]
Length = 282
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + +T KC +C+ + + Q+QTRSADEPMTTF C C RW+
Sbjct: 231 GAGPQQAETDSFKCGRCKQRKCTYYQMQTRSADEPMTTFVTC--TVCNNRWK 280
>gi|303388862|ref|XP_003072664.1| transcription elongation factor S-II [Encephalitozoon intestinalis
ATCC 50506]
gi|303301806|gb|ADM11304.1| transcription elongation factor S-II [Encephalitozoon intestinalis
ATCC 50506]
Length = 256
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ +T KC KC + + Q+QTRS DEPMTTF C +CG +WR
Sbjct: 210 QKAETDMFKCSKCGERKCSYRQLQTRSGDEPMTTFVTC---ECGNKWR 254
>gi|8050580|gb|AAF71710.1|AF220261_1 transcription elongation factor TFIIS [Drosophila virilis]
Length = 324
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 258 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 315
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 316 ECGNRWK 322
>gi|242023352|ref|XP_002432098.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative
[Pediculus humanus corporis]
gi|212517472|gb|EEB19360.1| DNA-directed RNA polymerase II 15.1 kDa polypeptide, putative
[Pediculus humanus corporis]
Length = 132
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + +EE CPKC + A F Q QTR A+E M +Y C N C RW
Sbjct: 71 ELTHIVSDVISDPTLPRSEEHPCPKCNNRLAVFFQAQTRRAEEEMRLYYVCTNQHCCHRW 130
Query: 71 RE 72
E
Sbjct: 131 TE 132
>gi|195030242|ref|XP_001987977.1| GH10818 [Drosophila grimshawi]
gi|193903977|gb|EDW02844.1| GH10818 [Drosophila grimshawi]
Length = 350
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 311 KCGKCKKRNCTYNQLQTRSADEPMTTFVMCN--ECGNRWK 348
>gi|297830308|ref|XP_002883036.1| hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp.
lyrata]
gi|297328876|gb|EFH59295.1| hypothetical protein ARALYDRAFT_318462 [Arabidopsis lyrata subsp.
lyrata]
Length = 114
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+H A F Q R +E MT F+ CCN CG RWRE
Sbjct: 75 RCAKCQHSEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRE 114
>gi|195385615|ref|XP_002051500.1| TfIIS [Drosophila virilis]
gi|194147957|gb|EDW63655.1| TfIIS [Drosophila virilis]
Length = 324
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 258 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 315
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 316 ECGNRWK 322
>gi|391331678|ref|XP_003740270.1| PREDICTED: transcription elongation factor S-II-like [Metaseiulus
occidentalis]
Length = 288
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 249 KCGKCKKSNCTYNQVQTRSADEPMTTFAFCN--ECGNRWK 286
>gi|384493033|gb|EIE83524.1| hypothetical protein RO3G_08229 [Rhizopus delemar RA 99-880]
Length = 58
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 23/39 (58%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
CP+C HP A F Q +R A+ MT FY C + CG RW
Sbjct: 18 SCPRCGHPEAVFFQSSSRRAEAKMTLFYVCASKGCGHRW 56
>gi|395521671|ref|XP_003764939.1| PREDICTED: transcription elongation factor A protein 3 [Sarcophilus
harrisii]
Length = 479
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 323 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 360
>gi|332158918|ref|YP_004424197.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
gi|331034381|gb|AEC52193.1| DNA-directed RNA polymerase subunit M [Pyrococcus sp. NA2]
Length = 110
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
++K + + V+ + + T + CPKC + A++ ++QTR+ DEP T F+KC +C
Sbjct: 45 EVKHRPDEGVIVVEQDFSTLPTAKVTCPKCGYHEAWYWELQTRAGDEPSTIFFKC--KRC 102
Query: 67 GFRWR 71
G+ WR
Sbjct: 103 GYVWR 107
>gi|156102921|ref|XP_001617153.1| transcription elongation factor [Plasmodium vivax Sal-1]
gi|148806027|gb|EDL47426.1| transcription elongation factor, putative [Plasmodium vivax]
Length = 435
Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 395 EFQCFKCKGYETVYHQLQTRSSDEPMTTFVTC--LKCNNRWK 434
>gi|406865033|gb|EKD18076.1| transcription elongation factor S-II [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 301
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 262 KCGKCGQKKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 299
>gi|340376666|ref|XP_003386853.1| PREDICTED: transcription elongation factor A protein 2-like
[Amphimedon queenslandica]
Length = 314
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 275 KCGKCGKRNCSYNQMQTRSADEPMTTFVLCN--ECGHRWK 312
>gi|310795576|gb|EFQ31037.1| transcription factor S-II [Glomerella graminicola M1.001]
Length = 122
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 3/45 (6%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +E CPKCE F +Q RSADE T F+ C CGF+W +
Sbjct: 79 TIKETCPKCEREEVRFTAVQLRSADEGSTIFFTC---DCGFKWSQ 120
>gi|302309342|ref|NP_986676.2| AGR011Wp [Ashbya gossypii ATCC 10895]
gi|299788313|gb|AAS54500.2| AGR011Wp [Ashbya gossypii ATCC 10895]
gi|374109927|gb|AEY98832.1| FAGR011Wp [Ashbya gossypii FDAG1]
Length = 304
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T +C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 253 GATLERSVTDRFQCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EVCGNRWK 302
>gi|224286619|gb|ACN41014.1| unknown [Picea sitchensis]
Length = 328
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/44 (50%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC KC + + Q+QTRSADEPMTTF C N C W+
Sbjct: 285 TDQFKCGKCGQRKCTYYQLQTRSADEPMTTFVTCVN--CNNHWK 326
>gi|403215573|emb|CCK70072.1| hypothetical protein KNAG_0D03260 [Kazachstania naganishii CBS
8797]
Length = 309
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T +C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSVTDRFQCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>gi|118791506|ref|XP_319787.3| AGAP009035-PA [Anopheles gambiae str. PEST]
gi|116117634|gb|EAA14772.3| AGAP009035-PA [Anopheles gambiae str. PEST]
Length = 315
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + T KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 265 ATVQGTKTDLLKCGKCKKRNCTYNQLQTRSADEPMTTFVMCN--ECGHRWK 313
>gi|427786401|gb|JAA58652.1| Putative rna polymerase ii subunit [Rhipicephalus pulchellus]
Length = 129
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + CPKC H A F Q Q+R A++ M +Y C N C RW E
Sbjct: 85 TEDHTCPKCAHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129
>gi|242017625|ref|XP_002429288.1| transcription elongation factor S-II, putative [Pediculus humanus
corporis]
gi|212514184|gb|EEB16550.1| transcription elongation factor S-II, putative [Pediculus humanus
corporis]
Length = 289
Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 250 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 287
>gi|146304608|ref|YP_001191924.1| DNA-directed RNA polymerase M [Metallosphaera sedula DSM 5348]
gi|145702858|gb|ABP96000.1| DNA-directed RNA polymerase, subunit M [Metallosphaera sedula DSM
5348]
Length = 110
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C + +F +QTR+ADEP T FYKC KCG WRE
Sbjct: 71 CPNCRNDEVFFWMLQTRAADEPPTRFYKC--TKCGKVWRE 108
>gi|426222790|ref|XP_004005565.1| PREDICTED: transcription elongation factor A protein 3 [Ovis aries]
Length = 375
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 290 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 327
>gi|321468341|gb|EFX79326.1| hypothetical protein DAPPUDRAFT_231046 [Daphnia pulex]
Length = 127
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ ++ + + TE+ CPKC H A F Q Q+R A+E M +Y C N C RW
Sbjct: 66 ELTQIVADVISDPTLPRTEDHPCPKCTHREAVFFQSQSRRAEEEMRLYYVCTNSNCTHRW 125
Query: 71 RE 72
E
Sbjct: 126 TE 127
>gi|7327286|gb|AAB29028.2| RNA polymerase II subunit 9 [Drosophila melanogaster]
Length = 129
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVSFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>gi|340914730|gb|EGS18071.1| putative transcription elongation factor [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 303
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 264 QCSKCKQKKVSYSQAQTRSADEPMTTFCECTV--CGHRWK 301
>gi|294929692|ref|XP_002779329.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
gi|239888392|gb|EER11124.1| DNA-directed RNA polymerase I, putative [Perkinsus marinus ATCC
50983]
Length = 408
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+E+CPKC++PR F Q RSADE T FY+C KCG+R+
Sbjct: 365 VDEECPKCKNPRMAFWTQQLRSADEGQTVFYECQ--KCGYRF 404
>gi|428169563|gb|EKX38496.1| DNA-directed RNA polymerase I subunit, RPA12 [Guillardia theta
CCMP2712]
Length = 92
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 20 AAAWENVD-------TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
AA + VD T EE CPKC + A + +Q RSADE T FY+C KCG W
Sbjct: 33 AALLQEVDGEQDGRATVEENCPKCNNHEAKYSTLQMRSADEGQTIFYEC--TKCGHVW 88
>gi|401625778|gb|EJS43771.1| dst1p [Saccharomyces arboricola H-6]
Length = 309
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>gi|290994184|ref|XP_002679712.1| predicted protein [Naegleria gruberi]
gi|284093330|gb|EFC46968.1| predicted protein [Naegleria gruberi]
Length = 116
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
V+++ +C KC+ + F ++QTRSADEPMT F C + CG RW++
Sbjct: 72 VESSMFRCGKCKKTQCTFYEMQTRSADEPMTAFITC--LSCGNRWKQ 116
>gi|345566736|gb|EGX49678.1| hypothetical protein AOL_s00078g167 [Arthrobotrys oligospora ATCC
24927]
Length = 316
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + +C KC + Q QTRSADEPMTTF +C ++CG RW+
Sbjct: 273 TDQLRCGKCGKRNVSYSQAQTRSADEPMTTFCEC--LQCGNRWK 314
>gi|357124260|ref|XP_003563821.1| PREDICTED: transcription elongation factor A protein 2-like
[Brachypodium distachyon]
Length = 364
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 321 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 362
>gi|348560474|ref|XP_003466038.1| PREDICTED: transcription elongation factor A protein 1-like [Cavia
porcellus]
Length = 425
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 360 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 396
>gi|145234013|ref|XP_001400379.1| transcription elongation factor S-II [Aspergillus niger CBS 513.88]
gi|134057319|emb|CAK44518.1| unnamed protein product [Aspergillus niger]
gi|350635099|gb|EHA23461.1| hypothetical protein ASPNIDRAFT_37464 [Aspergillus niger ATCC 1015]
Length = 303
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 242 KIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMN--C 297
Query: 67 GFRWRE 72
G W++
Sbjct: 298 GKSWKQ 303
>gi|148223439|ref|NP_001081812.1| transcription elongation factor A (SII), 3 [Xenopus laevis]
gi|1373400|gb|AAC60115.1| transcription elongation factor type xTFIIS.l [Xenopus laevis]
gi|46249530|gb|AAH68738.1| LOC398066 protein [Xenopus laevis]
Length = 292
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+H MG ++ T C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 238 EHQMGKTGGTQSDLFT---CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 290
>gi|82915268|ref|XP_729034.1| transcription elongation factor TFIIS.h [Plasmodium yoelii yoelii
17XNL]
gi|23485845|gb|EAA20599.1| transcription elongation factor TFIIS.h, putative [Plasmodium
yoelii yoelii]
Length = 366
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 326 EFQCFKCKGYDTVYQQLQTRSSDEPMTTFVTC--LKCNNRWK 365
>gi|50286491|ref|XP_445674.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524979|emb|CAG58585.1| unnamed protein product [Candida glabrata]
Length = 306
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK + + + G A E T C KC+ + + Q+QTRSADEP+TTF C C
Sbjct: 244 EIKKQNLFNAQG--ATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EAC 299
Query: 67 GFRWR 71
G RW+
Sbjct: 300 GNRWK 304
>gi|346470035|gb|AEO34862.1| hypothetical protein [Amblyomma maculatum]
Length = 129
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + CPKC H A F Q Q+R A++ M +Y C N C RW E
Sbjct: 85 TEDHTCPKCGHREAVFFQAQSRRAEDEMRLYYVCTNTNCTHRWTE 129
>gi|440804552|gb|ELR25429.1| transcription elongation factor SII, hS-II-T1 isoform 8, putative
[Acanthamoeba castellanii str. Neff]
Length = 188
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF +C N C RWR
Sbjct: 150 RCHKCKKRECTYYQLQTRSADEPMTTFVQCTN--CNNRWR 187
>gi|355697956|gb|EHH28504.1| hypothetical protein EGK_18954, partial [Macaca mulatta]
gi|355779691|gb|EHH64167.1| hypothetical protein EGM_17319, partial [Macaca fascicularis]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|115385046|ref|XP_001209070.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114196762|gb|EAU38462.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 305
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 244 KIQKQNMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMN--C 299
Query: 67 GFRWRE 72
G W++
Sbjct: 300 GKSWKQ 305
>gi|68072123|ref|XP_677975.1| transcription elongation factor [Plasmodium berghei strain ANKA]
gi|56498287|emb|CAH96309.1| transcription elongation factor s-ii, putative [Plasmodium berghei]
Length = 365
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 325 EFQCFKCKGYDTVYQQLQTRSSDEPMTTFVTC--LKCNNRWK 364
>gi|413948074|gb|AFW80723.1| hypothetical protein ZEAMMB73_218313 [Zea mays]
Length = 1230
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C C H A F Q TR +E MT F+ CC+ CG RWRE
Sbjct: 1187 TKTVRCNLCGHGEAVFFQAATR-GEEGMTLFFVCCSPDCGHRWRE 1230
>gi|47220832|emb|CAG00039.1| unnamed protein product [Tetraodon nigroviridis]
Length = 424
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 385 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 422
>gi|363750516|ref|XP_003645475.1| hypothetical protein Ecym_3155 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889109|gb|AET38658.1| Hypothetical protein Ecym_3155 [Eremothecium cymbalariae
DBVPG#7215]
Length = 125
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCP+C + ++ +Q RSADE T FY C CG+R+R
Sbjct: 81 TIKEKCPQCSNDEMHYHTLQLRSADEGATVFYTC--TSCGYRFR 122
>gi|338721851|ref|XP_001504276.3| PREDICTED: hypothetical protein LOC100071603 [Equus caballus]
Length = 654
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 514 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 551
>gi|431891774|gb|ELK02308.1| Transcription elongation factor A protein 1 [Pteropus alecto]
Length = 325
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 261 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 297
>gi|307192626|gb|EFN75800.1| Transcription elongation factor S-II [Harpegnathos saltator]
Length = 278
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 239 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 276
>gi|410080934|ref|XP_003958047.1| hypothetical protein KAFR_0F03160 [Kazachstania africana CBS 2517]
gi|372464634|emb|CCF58912.1| hypothetical protein KAFR_0F03160 [Kazachstania africana CBS 2517]
Length = 323
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I+ K + + G A E T C KC+ + + Q+QTRSADEP+TTF C C
Sbjct: 261 EIREKNLFNAQG--ATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EVC 316
Query: 67 GFRWR 71
G RW+
Sbjct: 317 GNRWK 321
>gi|367006041|ref|XP_003687752.1| hypothetical protein TPHA_0K01860 [Tetrapisispora phaffii CBS 4417]
gi|357526057|emb|CCE65318.1| hypothetical protein TPHA_0K01860 [Tetrapisispora phaffii CBS 4417]
Length = 303
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 252 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 301
>gi|289742185|gb|ADD19840.1| transcription elongation factor tFIIS [Glossina morsitans
morsitans]
Length = 326
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRS+DEPMTTF C
Sbjct: 260 KLREKFVKEAINDAQLATVQGTKTDLLKCGKCKKRNCTYNQLQTRSSDEPMTTFVMCN-- 317
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 318 ECGHRWK 324
>gi|345306840|ref|XP_001514566.2| PREDICTED: transcription elongation factor A protein 1-like
[Ornithorhynchus anatinus]
Length = 291
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 253 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 289
>gi|291391943|ref|XP_002712400.1| PREDICTED: transcription elongation factor A 1 isoform 1
[Oryctolagus cuniculus]
Length = 300
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 298
>gi|221061105|ref|XP_002262122.1| transcription factor [Plasmodium knowlesi strain H]
gi|193811272|emb|CAQ42000.1| transcription factor, putative [Plasmodium knowlesi strain H]
Length = 407
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 367 EFQCFKCKGYETVYHQLQTRSSDEPMTTFVTC--LKCNNRWK 406
>gi|255559741|ref|XP_002520890.1| transcription elongation factor s-II, putative [Ricinus communis]
gi|223540021|gb|EEF41599.1| transcription elongation factor s-II, putative [Ricinus communis]
Length = 330
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTT+ C N C RW+
Sbjct: 287 TDQFKCGRCGQRKTSYYQMQTRSADEPMTTYVTCVN--CSNRWK 328
>gi|326489753|dbj|BAK01857.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 85
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E +C C H A F Q R +E MT F+ CCN CG RWRE
Sbjct: 42 TKEVRCAVCGHGEAVFFQATAR-GEEGMTLFFVCCNPSCGHRWRE 85
>gi|156841304|ref|XP_001644026.1| hypothetical protein Kpol_1026p15 [Vanderwaltozyma polyspora DSM
70294]
gi|156114659|gb|EDO16168.1| hypothetical protein Kpol_1026p15 [Vanderwaltozyma polyspora DSM
70294]
Length = 323
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 272 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 321
>gi|302757237|ref|XP_002962042.1| hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii]
gi|302775260|ref|XP_002971047.1| hypothetical protein SELMODRAFT_95006 [Selaginella moellendorffii]
gi|300161029|gb|EFJ27645.1| hypothetical protein SELMODRAFT_95006 [Selaginella moellendorffii]
gi|300170701|gb|EFJ37302.1| hypothetical protein SELMODRAFT_77443 [Selaginella moellendorffii]
Length = 114
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + +C +C+H A F Q R +E MT F+ CCN CG+RWR+
Sbjct: 71 TKDVRCSRCKHGEAVFFQATAR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|387015674|gb|AFJ49956.1| Transcription elongation factor A protein 1 [Crotalus adamanteus]
Length = 304
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 302
>gi|114052218|ref|NP_001039390.1| transcription elongation factor A protein 1 [Bos taurus]
gi|122135281|sp|Q29RL9.1|TCEA1_BOVIN RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1
gi|88954354|gb|AAI14118.1| Transcription elongation factor A (SII), 1 [Bos taurus]
Length = 301
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|60829875|gb|AAX36898.1| transcription elongation factor A 1 [synthetic construct]
Length = 302
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|322786324|gb|EFZ12874.1| hypothetical protein SINV_06958 [Solenopsis invicta]
Length = 113
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + T KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 63 ATVQGTKTDLLKCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 111
>gi|291391945|ref|XP_002712401.1| PREDICTED: transcription elongation factor A 1 isoform 2
[Oryctolagus cuniculus]
Length = 279
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 241 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 277
>gi|255083388|ref|XP_002504680.1| predicted protein [Micromonas sp. RCC299]
gi|226519948|gb|ACO65938.1| predicted protein [Micromonas sp. RCC299]
Length = 114
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ T KC KC + + Q+QTRSADEPMTTF C N C RW+
Sbjct: 68 QQASTDAFKCGKCGQRKCTYYQLQTRSADEPMTTFVTCVN--CDNRWK 113
>gi|119607145|gb|EAW86739.1| transcription elongation factor A (SII), 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 249 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 285
>gi|71043668|ref|NP_001020906.1| transcription elongation factor A protein 1 [Rattus norvegicus]
gi|293353479|ref|XP_002728223.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Rattus norvegicus]
gi|392333220|ref|XP_003752832.1| PREDICTED: transcription elongation factor A protein 1-like [Rattus
norvegicus]
gi|73919859|sp|Q4KLL0.1|TCEA1_RAT RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1
gi|68533992|gb|AAH99141.1| Transcription elongation factor A (SII) 1 [Rattus norvegicus]
gi|149040017|gb|EDL94101.1| rCG63250 [Rattus norvegicus]
Length = 301
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|281207318|gb|EFA81501.1| hypothetical protein PPL_05490 [Polysphondylium pallidum PN500]
Length = 141
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 19 GAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
A + TT++ +C KC+ + + Q+QTRSADEP+TTF C N C RW
Sbjct: 20 AATLSRDAATTDQFQCGKCKQRKCTYFQLQTRSADEPLTTFVTCVN--CNNRW 70
>gi|61365803|gb|AAX42766.1| transcription elongation factor A 1 [synthetic construct]
Length = 302
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|339443|gb|AAA61138.1| transcription elongation factor SII [Homo sapiens]
Length = 301
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|6321395|ref|NP_011472.1| Dst1p [Saccharomyces cerevisiae S288c]
gi|1729915|sp|P07273.4|TFS2_YEAST RecName: Full=Transcription elongation factor S-II; AltName:
Full=DNA strand transfer protein alpha; Short=STP-alpha;
AltName: Full=DNA strand transferase 1; AltName:
Full=Pyrimidine pathway regulatory protein 2
gi|34810565|pdb|1PQV|S Chain S, Rna Polymerase Ii-Tfiis Complex
gi|218517|dbj|BAA02046.1| transcriptional elongation factor S-II [Saccharomyces cerevisiae]
gi|1322528|emb|CAA96744.1| DST1 [Saccharomyces cerevisiae]
gi|151943248|gb|EDN61561.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
YJM789]
gi|190407007|gb|EDV10274.1| RNA polymerase II elongation factor [Saccharomyces cerevisiae
RM11-1a]
gi|256271330|gb|EEU06396.1| Dst1p [Saccharomyces cerevisiae JAY291]
gi|285812157|tpg|DAA08057.1| TPA: Dst1p [Saccharomyces cerevisiae S288c]
gi|323304905|gb|EGA58662.1| Dst1p [Saccharomyces cerevisiae FostersB]
gi|323309085|gb|EGA62313.1| Dst1p [Saccharomyces cerevisiae FostersO]
gi|323337623|gb|EGA78868.1| Dst1p [Saccharomyces cerevisiae Vin13]
gi|323348527|gb|EGA82771.1| Dst1p [Saccharomyces cerevisiae Lalvin QA23]
gi|323354949|gb|EGA86780.1| Dst1p [Saccharomyces cerevisiae VL3]
gi|349578179|dbj|GAA23345.1| K7_Dst1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765583|gb|EHN07090.1| Dst1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299216|gb|EIW10310.1| Dst1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 309
Score = 46.6 bits (109), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>gi|5803191|ref|NP_006747.1| transcription elongation factor A protein 1 isoform 1 [Homo
sapiens]
gi|386781537|ref|NP_001247637.1| transcription elongation factor A protein 1 [Macaca mulatta]
gi|332213781|ref|XP_003256009.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Nomascus leucogenys]
gi|426359603|ref|XP_004047057.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Gorilla gorilla gorilla]
gi|1174652|sp|P23193.2|TCEA1_HUMAN RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor TFIIS.o
gi|37074|emb|CAA44470.1| transcription elongation factor [Homo sapiens]
gi|47940496|gb|AAH72460.1| Transcription elongation factor A (SII), 1 [Homo sapiens]
gi|49457436|emb|CAG47017.1| TCEA1 [Homo sapiens]
gi|54696852|gb|AAV38798.1| transcription elongation factor A (SII), 1 [Homo sapiens]
gi|61355862|gb|AAX41184.1| transcription elongation factor A 1 [synthetic construct]
gi|158261931|dbj|BAF83143.1| unnamed protein product [Homo sapiens]
gi|380815988|gb|AFE79868.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
gi|383421129|gb|AFH33778.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
gi|384942088|gb|AFI34649.1| transcription elongation factor A protein 1 isoform 1 [Macaca
mulatta]
Length = 301
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|405958419|gb|EKC24549.1| Transcription elongation factor A protein 1 [Crassostrea gigas]
Length = 369
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 1 MRCGRLKIKPKEID-HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
MR R K + ID H M + E T KC KC + Q+QTRS+DEPMTTF
Sbjct: 278 MRQLRAKFTKESIDDHQM---SRQEGTVTDLFKCGKCGKKNCTYNQLQTRSSDEPMTTFV 334
Query: 60 KCCNIKCGFRWR 71
C ++CG RW+
Sbjct: 335 FC--MECGNRWK 344
>gi|114620133|ref|XP_528135.2| PREDICTED: transcription elongation factor A protein 1 isoform 5
[Pan troglodytes]
gi|397505489|ref|XP_003823293.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Pan paniscus]
gi|410212656|gb|JAA03547.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410251522|gb|JAA13728.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410298812|gb|JAA28006.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410341539|gb|JAA39716.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
Length = 301
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|114052232|ref|NP_001039825.1| transcription elongation factor A protein 3 [Bos taurus]
gi|122135940|sp|Q2KI09.1|TCEA3_BOVIN RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3
gi|86438556|gb|AAI12813.1| Transcription elongation factor A (SII), 3 [Bos taurus]
gi|296490011|tpg|DAA32124.1| TPA: transcription elongation factor A protein 3 [Bos taurus]
Length = 349
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 310 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 347
>gi|417398602|gb|JAA46334.1| Putative transcription elongation factor a protein 1 [Desmodus
rotundus]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|401825902|ref|XP_003887045.1| transcription elongation factor S-II [Encephalitozoon hellem ATCC
50504]
gi|392998203|gb|AFM98064.1| transcription elongation factor S-II [Encephalitozoon hellem ATCC
50504]
Length = 253
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ +T KC KC + + Q+QTRS DEPMTTF C +CG +WR
Sbjct: 207 QKAETDMFKCNKCGERKCSYRQLQTRSGDEPMTTFVTC---ECGNKWR 251
>gi|167042511|gb|ABZ07236.1| putative transcription factor S-II (TFIIS) [uncultured marine
crenarchaeote HF4000_ANIW133C7]
Length = 59
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C KC + + +QTRSADEP T FY+C IKC F WR+
Sbjct: 20 CEKCHNQEGVWWSLQTRSADEPETRFYRC--IKCNFTWRD 57
>gi|149060978|gb|EDM11588.1| rCG30435 [Rattus norvegicus]
Length = 302
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 264 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 300
>gi|327279244|ref|XP_003224367.1| PREDICTED: transcription elongation factor A protein 1-like [Anolis
carolinensis]
Length = 341
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 302
>gi|45439355|ref|NP_958845.1| transcription elongation factor A protein 1 isoform 2 [Homo
sapiens]
gi|332213783|ref|XP_003256010.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Nomascus leucogenys]
gi|426359605|ref|XP_004047058.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Gorilla gorilla gorilla]
gi|37072|emb|CAA40484.1| transcription elongation factor [Homo sapiens]
Length = 280
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|355723558|gb|AES07930.1| transcription elongation factor A , 1 [Mustela putorius furo]
Length = 314
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 277 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 313
>gi|301788390|ref|XP_002929610.1| PREDICTED: transcription elongation factor A protein 1-like
[Ailuropoda melanoleuca]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|403300334|ref|XP_003940898.1| PREDICTED: transcription elongation factor A protein 1 [Saimiri
boliviensis boliviensis]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|343887420|ref|NP_001230609.1| transcription elongation factor A protein 1 [Sus scrofa]
Length = 300
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 298
>gi|345324936|ref|XP_003430868.1| PREDICTED: transcription elongation factor A protein 3-like
[Ornithorhynchus anatinus]
Length = 281
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 279
>gi|407929237|gb|EKG22072.1| Zinc finger TFIIS-type protein [Macrophomina phaseolina MS6]
Length = 302
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 24/51 (47%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E +T C KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 252 AQAERSISTSLTCGKCGQKKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 300
>gi|395739672|ref|XP_003780672.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor A
protein 1 [Pongo abelii]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|448523122|ref|XP_003868858.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis Co
90-125]
gi|380353198|emb|CCG25954.1| Rpa12 DNA-directed RNA polymerase I [Candida orthopsilosis]
Length = 123
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 9 KPKEIDHVMGGAAAWENVD---TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
K K V+ + + + +D T +EKCPKC + + +Q RSADE T FY C N
Sbjct: 57 KLKSARSVVKTSLSKDELDEGATIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCPN-- 114
Query: 66 CGFRWR 71
CG+R+R
Sbjct: 115 CGYRFR 120
>gi|74146960|dbj|BAE25455.1| unnamed protein product [Mus musculus]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|444318181|ref|XP_004179748.1| hypothetical protein TBLA_0C04310 [Tetrapisispora blattae CBS 6284]
gi|387512789|emb|CCH60229.1| hypothetical protein TBLA_0C04310 [Tetrapisispora blattae CBS 6284]
Length = 308
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 270 CGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 306
>gi|126342555|ref|XP_001362914.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|62543505|ref|NP_001015008.1| transcription elongation factor A protein 3 [Rattus norvegicus]
gi|60552718|gb|AAH91180.1| Transcription elongation factor A (SII), 3 [Rattus norvegicus]
Length = 348
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|6755728|ref|NP_035671.1| transcription elongation factor A protein 1 isoform 2 [Mus
musculus]
gi|28380825|sp|P10711.2|TCEA1_MOUSE RecName: Full=Transcription elongation factor A protein 1; AltName:
Full=Transcription elongation factor S-II protein 1;
AltName: Full=Transcription elongation factor TFIIS.o
gi|201939|gb|AAA40419.1| transcription factor S-II [Mus musculus]
gi|13543739|gb|AAH06022.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|38181911|gb|AAH61490.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|52789281|gb|AAH83127.1| Transcription elongation factor A (SII) 1 [Mus musculus]
gi|74193672|dbj|BAE22787.1| unnamed protein product [Mus musculus]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|126342511|ref|XP_001362232.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|114620135|ref|XP_001151569.1| PREDICTED: transcription elongation factor A protein 1 isoform 3
[Pan troglodytes]
gi|397505491|ref|XP_003823294.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Pan paniscus]
gi|410212654|gb|JAA03546.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410251520|gb|JAA13727.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410298810|gb|JAA28005.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
gi|410341537|gb|JAA39715.1| transcription elongation factor A (SII), 1 [Pan troglodytes]
Length = 280
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|395841852|ref|XP_003793744.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Otolemur garnettii]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|440909134|gb|ELR59079.1| Transcription elongation factor A protein 1, partial [Bos grunniens
mutus]
Length = 289
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 252 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 288
>gi|367020002|ref|XP_003659286.1| hypothetical protein MYCTH_2296116 [Myceliophthora thermophila ATCC
42464]
gi|347006553|gb|AEO54041.1| hypothetical protein MYCTH_2296116 [Myceliophthora thermophila ATCC
42464]
Length = 309
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 270 QCGKCGKKKVSYSQAQTRSADEPMTTFCEC--TVCGHRWK 307
>gi|365986008|ref|XP_003669836.1| hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
gi|343768605|emb|CCD24593.1| hypothetical protein NDAI_0D02790 [Naumovozyma dairenensis CBS 421]
Length = 308
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK + + + G A E T C KC+ + + Q+QTRSADEP+TTF C C
Sbjct: 246 EIKKQNLFNAQG--ATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EAC 301
Query: 67 GFRWR 71
G RW+
Sbjct: 302 GNRWK 306
>gi|334325647|ref|XP_003340666.1| PREDICTED: transcription elongation factor A protein 1-like
[Monodelphis domestica]
Length = 301
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|229094709|ref|NP_001153222.1| transcription elongation factor A protein 1 isoform 3 [Mus
musculus]
Length = 300
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 298
>gi|351701808|gb|EHB04727.1| Transcription elongation factor A protein 1, partial
[Heterocephalus glaber]
Length = 285
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 248 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 284
>gi|57530393|ref|NP_001006387.1| transcription elongation factor A protein 1 [Gallus gallus]
gi|53136812|emb|CAG32735.1| hypothetical protein RCJMB04_34f23 [Gallus gallus]
Length = 304
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 302
>gi|15228929|ref|NP_188323.1| DNA-directed RNA polymerase II subunit I [Arabidopsis thaliana]
gi|45752612|gb|AAS76204.1| At3g16980 [Arabidopsis thaliana]
gi|46359779|gb|AAS88753.1| At3g16980 [Arabidopsis thaliana]
gi|332642370|gb|AEE75891.1| DNA-directed RNA polymerase II subunit I [Arabidopsis thaliana]
Length = 114
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+H A F Q R +E MT F+ CCN CG RWRE
Sbjct: 75 RCSKCQHREAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRE 114
>gi|224046246|ref|XP_002197689.1| PREDICTED: transcription elongation factor A protein 1 isoform 1
[Taeniopygia guttata]
Length = 304
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 302
>gi|349602860|gb|AEP98866.1| Transcription elongation factor A protein 1-like protein, partial
[Equus caballus]
Length = 290
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 252 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 288
>gi|119607146|gb|EAW86740.1| transcription elongation factor A (SII), 1, isoform CRA_b [Homo
sapiens]
Length = 260
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 222 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 258
>gi|350296969|gb|EGZ77946.1| transcription elongation factor [Neurospora tetrasperma FGSC 2509]
Length = 298
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 259 KCGKCGQRKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 296
>gi|50304397|ref|XP_452148.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641280|emb|CAH02541.1| KLLA0B13860p [Kluyveromyces lactis]
Length = 160
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
EKCPKC + + ++ +Q RSADE T FY C CG+R+R
Sbjct: 118 NEKCPKCANDKMHYHTLQLRSADEGATVFYTC--TACGYRFR 157
>gi|12832213|dbj|BAB22010.1| unnamed protein product [Mus musculus]
Length = 347
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 345
>gi|259146459|emb|CAY79716.1| Dst1p [Saccharomyces cerevisiae EC1118]
Length = 309
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>gi|32189438|ref|NP_035672.1| transcription elongation factor A protein 3 [Mus musculus]
gi|28381402|sp|P23881.3|TCEA3_MOUSE RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3;
AltName: Full=Transcription elongation factor TFIIS.h
gi|3288547|emb|CAA11392.1| transcription elongation factor TFIIS.h [Mus musculus]
gi|12840988|dbj|BAB25037.1| unnamed protein product [Mus musculus]
gi|14789853|gb|AAH10807.1| Transcription elongation factor A (SII), 3 [Mus musculus]
Length = 347
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 345
>gi|157888820|dbj|BAF80886.1| tissue-specific transcription factor S-II [Mus musculus]
Length = 347
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 345
>gi|148697997|gb|EDL29944.1| transcription elongation factor A (SII), 3 [Mus musculus]
Length = 347
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 345
>gi|91084035|ref|XP_966732.1| PREDICTED: similar to transcription elongation factor S-II
[Tribolium castaneum]
gi|270008004|gb|EFA04452.1| hypothetical protein TcasGA2_TC014756 [Tribolium castaneum]
Length = 294
Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 255 KCGKCKKRNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 292
>gi|380476055|emb|CCF44922.1| transcription elongation factor S-II [Colletotrichum higginsianum]
Length = 302
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 263 KCGKCGQKKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 300
>gi|240972273|ref|XP_002400972.1| transcription factor S-II, putative [Ixodes scapularis]
gi|215490968|gb|EEC00609.1| transcription factor S-II, putative [Ixodes scapularis]
Length = 255
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M A T KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 201 DHQM---AVTGGTKTDLLKCGKCRKSNCTYNQVQTRSADEPMTTFCYCN--ECGHRWK 253
>gi|171687673|ref|XP_001908777.1| hypothetical protein [Podospora anserina S mat+]
gi|170943798|emb|CAP69450.1| unnamed protein product [Podospora anserina S mat+]
Length = 295
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 256 KCGKCGQKKVSYSQAQTRSADEPMTTFCECTV--CGNRWK 293
>gi|126342513|ref|XP_001362316.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|408405124|ref|YP_006863107.1| DNA-directed RNA polymerase subunit M [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365720|gb|AFU59450.1| putative DNA-directed RNA polymerase subunit M [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 94
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 3/56 (5%)
Query: 16 VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
VM G + E + TT +CP+C + A++ +QTRSADE T FY+C KC WR
Sbjct: 39 VMEGDSV-EALPTTNIECPQCGNGTAFWWMLQTRSADEATTQFYRC--TKCSHTWR 91
>gi|396081040|gb|AFN82659.1| DNA-directed RNA polymerase subunit M [Encephalitozoon romaleae
SJ-2008]
Length = 104
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 8 IKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCG 67
+ PK+ D ++ + V ++C +C F+++QTRSADEPMT FYKC I+C
Sbjct: 43 MTPKKNDGLIDEDDNLKFVSKCGKRC-ECGSEEVSFVELQTRSADEPMTIFYKC--IRCK 99
Query: 68 FRWRE 72
WRE
Sbjct: 100 KVWRE 104
>gi|148682306|gb|EDL14253.1| transcription elongation factor A (SII) 1 [Mus musculus]
Length = 302
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 264 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 300
>gi|124511836|ref|XP_001349051.1| transcription elongation factor s-II, putative [Plasmodium
falciparum 3D7]
gi|23498819|emb|CAD50896.1| transcription elongation factor s-II, putative [Plasmodium
falciparum 3D7]
Length = 403
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/42 (50%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 363 EFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTC--LKCNNRWK 402
>gi|389743667|gb|EIM84851.1| transcription elongation factor [Stereum hirsutum FP-91666 SS1]
Length = 299
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KIK + + +G A + +T +C +C+ + + Q QTRSADEPMTTF C C
Sbjct: 237 KIKEENMFKALG--AEEQQAETDAFQCGRCKQRKCRYRQAQTRSADEPMTTFVTC--TVC 292
Query: 67 GFRWR 71
RW+
Sbjct: 293 NNRWK 297
>gi|221042038|dbj|BAH12696.1| unnamed protein product [Homo sapiens]
Length = 280
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|126342557|ref|XP_001363001.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|390348322|ref|XP_799219.3| PREDICTED: transcription elongation factor S-II-like
[Strongylocentrotus purpuratus]
Length = 306
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 268 CGKCRKKNCTYNQMQTRSADEPMTTFVFCND--CGHRWK 304
>gi|281346348|gb|EFB21932.1| hypothetical protein PANDA_019839 [Ailuropoda melanoleuca]
Length = 264
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 227 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 263
>gi|126303929|ref|XP_001375747.1| PREDICTED: transcription elongation factor A protein 1-like isoform
1 [Monodelphis domestica]
Length = 301
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|395841854|ref|XP_003793745.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Otolemur garnettii]
Length = 280
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|366987517|ref|XP_003673525.1| hypothetical protein NCAS_0A05840 [Naumovozyma castellii CBS 4309]
gi|342299388|emb|CCC67142.1| hypothetical protein NCAS_0A05840 [Naumovozyma castellii CBS 4309]
Length = 307
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 256 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 305
>gi|336262956|ref|XP_003346260.1| DST1 protein [Sordaria macrospora k-hell]
gi|380093589|emb|CCC08553.1| putative DST1 protein [Sordaria macrospora k-hell]
Length = 298
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 259 KCGKCGQRKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 296
>gi|85119699|ref|XP_965694.1| hypothetical protein NCU02563 [Neurospora crassa OR74A]
gi|28927506|gb|EAA36458.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|38567143|emb|CAE76438.1| related to transcription elongation factor TFIIS [Neurospora
crassa]
gi|336464865|gb|EGO53105.1| hypothetical protein NEUTE1DRAFT_73389 [Neurospora tetrasperma FGSC
2508]
Length = 298
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 259 KCGKCGQRKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 296
>gi|258575459|ref|XP_002541911.1| transcription elongation factor S-II [Uncinocarpus reesii 1704]
gi|237902177|gb|EEP76578.1| transcription elongation factor S-II [Uncinocarpus reesii 1704]
Length = 303
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
LKI+ + +D M A E + +C KC + + + QTRSADEPMT F C +
Sbjct: 241 LKIQKENMDKAM--VAKAERSISKSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTC--LA 296
Query: 66 CGFRWRE 72
CG WR+
Sbjct: 297 CGKSWRQ 303
>gi|171424|gb|AAA34580.1| DST1 [Saccharomyces cerevisiae]
gi|172773|gb|AAA88734.1| DNA strand transferase alpha [Saccharomyces cerevisiae]
Length = 309
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>gi|212536338|ref|XP_002148325.1| transcription elongation factor S-II [Talaromyces marneffei ATCC
18224]
gi|210070724|gb|EEA24814.1| transcription elongation factor S-II [Talaromyces marneffei ATCC
18224]
Length = 296
Score = 46.2 bits (108), Expect = 0.003, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E ++ +C KC + + + QTRSADEPMT F C N C
Sbjct: 235 KIQKENMDKAM--VAQAERSISSSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCLN--C 290
Query: 67 GFRWRE 72
G W++
Sbjct: 291 GKSWKQ 296
>gi|168060795|ref|XP_001782379.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666171|gb|EDQ52833.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 114
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C C+H A F Q R +E MT F+ CCN CG+RWR+
Sbjct: 71 TKNVRCANCQHGEAVFFQATAR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|338728315|ref|XP_001489456.3| PREDICTED: transcription elongation factor A protein 1-like [Equus
caballus]
Length = 409
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C KC+ + Q+QTRSADEPMTTF C +CG RW++
Sbjct: 328 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWKD 365
>gi|426236089|ref|XP_004012007.1| PREDICTED: transcription elongation factor A protein 1 [Ovis aries]
Length = 313
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 275 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 311
>gi|296226473|ref|XP_002758943.1| PREDICTED: transcription elongation factor A protein 1 [Callithrix
jacchus]
Length = 323
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 285 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 321
>gi|449488934|ref|XP_002191406.2| PREDICTED: transcription elongation factor A protein 3 [Taeniopygia
guttata]
Length = 379
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 340 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 377
>gi|161529264|ref|YP_001583090.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
gi|160340565|gb|ABX13652.1| transcription termination factor Tfs [Nitrosopumilus maritimus
SCM1]
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 19 GAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
G E+ T + +C KC H A + +QTRSADEP T FY+C KC + WR
Sbjct: 52 GNEGEESHPTIKIECEKCGHDEAIWWMLQTRSADEPTTQFYRC--TKCQYTWR 102
>gi|429855994|gb|ELA30929.1| transcription elongation factor s-ii [Colletotrichum
gloeosporioides Nara gc5]
Length = 300
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 262 CGKCKQKKVSYSQAQTRSADEPMTTFCEC--TVCGNRWK 298
>gi|344287082|ref|XP_003415284.1| PREDICTED: transcription elongation factor A protein 3-like
[Loxodonta africana]
Length = 500
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + Q+QTRSADEPMTTF C +CG RW++
Sbjct: 310 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWKK 348
>gi|294495073|ref|YP_003541566.1| DNA-directed RNA polymerase, subunit M [Methanohalophilus mahii DSM
5219]
gi|292666072|gb|ADE35921.1| DNA-directed RNA polymerase, subunit M [Methanohalophilus mahii DSM
5219]
Length = 104
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 24 ENVD----TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
ENVD TT +CP+C + +AY+ Q RSADE T F+KC KC + WRE
Sbjct: 52 ENVDEGLPTTLAQCPECGNNKAYWWMRQLRSADESETRFFKC--TKCSYTWRE 102
>gi|242032519|ref|XP_002463654.1| hypothetical protein SORBIDRAFT_01g003660 [Sorghum bicolor]
gi|241917508|gb|EER90652.1| hypothetical protein SORBIDRAFT_01g003660 [Sorghum bicolor]
Length = 368
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 325 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 366
>gi|281351551|gb|EFB27135.1| hypothetical protein PANDA_001093 [Ailuropoda melanoleuca]
Length = 332
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 293 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 330
>gi|201937|gb|AAA40418.1| transcription factor S-II [Mus musculus]
Length = 266
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 228 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 264
>gi|225439709|ref|XP_002272768.1| PREDICTED: transcription elongation factor A protein 3 [Vitis
vinifera]
Length = 367
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 324 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 365
>gi|356516223|ref|XP_003526795.1| PREDICTED: transcription elongation factor A protein 2-like
[Glycine max]
Length = 367
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTT+ CC C RW+
Sbjct: 324 TDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTCC--VCNNRWK 365
>gi|310789962|gb|EFQ25495.1| transcription elongation factor S-II [Glomerella graminicola
M1.001]
Length = 302
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 263 KCGKCGQKKVSYSQAQTRSADEPMTTFCECT--VCGNRWK 300
>gi|45387785|ref|NP_991246.1| transcription elongation factor A protein 3 [Danio rerio]
gi|41107560|gb|AAH65444.1| Transcription elongation factor A (SII), 3 [Danio rerio]
Length = 409
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 370 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 407
>gi|73950631|ref|XP_535363.2| PREDICTED: transcription elongation factor A protein 3 [Canis lupus
familiaris]
Length = 348
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|330803649|ref|XP_003289816.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
gi|325080075|gb|EGC33646.1| hypothetical protein DICPUDRAFT_36381 [Dictyostelium purpureum]
Length = 136
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+EKCP C H + YF QTRSADE T FY C +KC ++
Sbjct: 94 DEKCPNCGHGKMYFKTAQTRSADEGQTIFYDC--VKCSHKF 132
>gi|449494108|ref|XP_004175278.1| PREDICTED: transcription elongation factor A protein 1 isoform 2
[Taeniopygia guttata]
Length = 267
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 229 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 265
>gi|402467838|gb|EJW03076.1| hypothetical protein EDEG_02555 [Edhazardia aedis USNM 41457]
Length = 46
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
++KC KC A ++++QTRSADEPMT FY+C ++C W+E
Sbjct: 6 QKKCVKCNCEIAMYIEMQTRSADEPMTIFYQC--VECRTTWKE 46
>gi|115471257|ref|NP_001059227.1| Os07g0229700 [Oryza sativa Japonica Group]
gi|113610763|dbj|BAF21141.1| Os07g0229700 [Oryza sativa Japonica Group]
gi|215737106|dbj|BAG96035.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 379
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 336 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 377
>gi|354488913|ref|XP_003506610.1| PREDICTED: transcription elongation factor A protein 1-like
[Cricetulus griseus]
Length = 318
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 280 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 316
>gi|294951345|ref|XP_002786934.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239901524|gb|EER18730.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 184
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+E+CPKC++PR F Q RSADE T FY+C KCG+R+
Sbjct: 141 VDEECPKCKNPRMAFWTQQLRSADEGQTVFYEC--QKCGYRF 180
>gi|149240061|ref|XP_001525906.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450029|gb|EDK44285.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Lodderomyces
elongisporus NRRL YB-4239]
Length = 123
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C +CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTC--TECGYRFR 120
>gi|410966352|ref|XP_003989697.1| PREDICTED: transcription elongation factor A protein 3 [Felis
catus]
Length = 347
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 308 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 345
>gi|329766135|ref|ZP_08257694.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
gi|393794803|ref|ZP_10378167.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia BG20]
gi|329137406|gb|EGG41683.1| transcription termination factor Tfs [Candidatus Nitrosoarchaeum
limnia SFB1]
Length = 103
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 15 HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+V+ A E + T + +C KC + A + +QTRSADEP T FY+C KC + WR
Sbjct: 46 NVLTENEATETLPTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRC--SKCRYTWR 100
>gi|126303931|ref|XP_001375763.1| PREDICTED: transcription elongation factor A protein 1-like isoform
2 [Monodelphis domestica]
Length = 280
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 278
>gi|449441244|ref|XP_004138392.1| PREDICTED: transcription elongation factor A protein 3-like
[Cucumis sativus]
Length = 369
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 326 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 367
>gi|119615455|gb|EAW95049.1| transcription elongation factor A (SII), 3, isoform CRA_b [Homo
sapiens]
Length = 396
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|429965129|gb|ELA47126.1| hypothetical protein VCUG_01399 [Vavraia culicis 'floridensis']
Length = 105
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
E+ C KC + A F ++QTRSADEPMT FY+C ++C W+E
Sbjct: 65 EKICEKCGYNTATFYEMQTRSADEPMTIFYQC--LQCKNTWKE 105
>gi|384485432|gb|EIE77612.1| hypothetical protein RO3G_02316 [Rhizopus delemar RA 99-880]
Length = 104
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+EKCP C HP + +Q RSADE T FY C KCG+++
Sbjct: 62 KEKCPSCGHPEMEYHTMQLRSADEGQTVFYNC--KKCGYKY 100
>gi|197129381|gb|ACH45879.1| putative transcription elongation factor A2 [Taeniopygia guttata]
Length = 300
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 298
>gi|384941052|gb|AFI34131.1| transcription elongation factor A protein 3 [Macaca mulatta]
gi|387540828|gb|AFJ71041.1| transcription elongation factor A protein 3 [Macaca mulatta]
Length = 348
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|355557658|gb|EHH14438.1| hypothetical protein EGK_00364, partial [Macaca mulatta]
Length = 348
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|344253671|gb|EGW09775.1| Transcription elongation factor A protein 1 [Cricetulus griseus]
Length = 278
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 240 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 276
>gi|332244802|ref|XP_003271560.1| PREDICTED: transcription elongation factor A protein 3 [Nomascus
leucogenys]
Length = 295
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 256 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 293
>gi|294951337|ref|XP_002786930.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239901520|gb|EER18726.1| DNA-directed RNA polymerase I 13.1 kDa polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 184
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/42 (52%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+E+CPKC++PR F Q RSADE T FY+C KCG+R+
Sbjct: 141 VDEECPKCKNPRMAFWTQQLRSADEGQTVFYEC--QKCGYRF 180
>gi|126138250|ref|XP_001385648.1| DNA-directed RNA polymerase I subunit A12 (RPA12) [Scheffersomyces
stipitis CBS 6054]
gi|126092926|gb|ABN67619.1| DNA-directed RNA polymerase I subunit A12 (RPA12) [Scheffersomyces
stipitis CBS 6054]
Length = 123
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTC--TSCGYRFR 120
>gi|449499153|ref|XP_004160740.1| PREDICTED: transcription elongation factor A protein 2-like
[Cucumis sativus]
Length = 290
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 247 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 288
>gi|390597425|gb|EIN06825.1| transcription elongation factor [Punctularia strigosozonata
HHB-11173 SS5]
Length = 320
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + + +G A + +T +C +C+ + + Q QTRSADEPMTTF C C
Sbjct: 258 KIREENLFQSLG--AEEQQAETDAFQCSRCKQRKCRYRQAQTRSADEPMTTFVTC--TVC 313
Query: 67 GFRWR 71
RW+
Sbjct: 314 NNRWK 318
>gi|326436982|gb|EGD82552.1| hypothetical protein PTSG_03204 [Salpingoeca sp. ATCC 50818]
Length = 269
Score = 45.8 bits (107), Expect = 0.003, Method: Composition-based stats.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + KC KC + ++Q R+ADEPMT C IKCG RWR+
Sbjct: 227 TNQLKCGKCGKNDVEYYEVQLRAADEPMTVIATC--IKCGHRWRQ 269
>gi|294887906|ref|XP_002772275.1| DNA-directed RNA polymerase subunit M, putative [Perkinsus
marinus ATCC 50983]
gi|239876350|gb|EER04091.1| DNA-directed RNA polymerase subunit M, putative [Perkinsus
marinus ATCC 50983]
Length = 78
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC + + Q+QTRS+DEPMTTF C N CG +W+
Sbjct: 39 QCGKCRKSQTTYFQMQTRSSDEPMTTFVTCLN--CGNKWK 76
>gi|66359276|ref|XP_626816.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|46228364|gb|EAK89263.1| hypothetical protein with carboxy terminus motif shared with
DNA-directed RNA polymerase subunit and TFIIS
[Cryptosporidium parvum Iowa II]
Length = 203
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
+E CP+C H A+F Q Q RSADE T Y+CC KC R
Sbjct: 161 QEICPECSHNEAFFTQFQARSADEGTTVMYECC--KCQHR 198
>gi|23617251|dbj|BAC20918.1| putative transcription elongation factor [Oryza sativa Japonica
Group]
gi|125599607|gb|EAZ39183.1| hypothetical protein OsJ_23609 [Oryza sativa Japonica Group]
Length = 373
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 330 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 371
>gi|41350335|ref|NP_003187.1| transcription elongation factor A protein 3 [Homo sapiens]
gi|397478949|ref|XP_003810796.1| PREDICTED: transcription elongation factor A protein 3 [Pan
paniscus]
gi|28380172|sp|O75764.2|TCEA3_HUMAN RecName: Full=Transcription elongation factor A protein 3; AltName:
Full=Transcription elongation factor S-II protein 3;
AltName: Full=Transcription elongation factor TFIIS.h
gi|27469901|gb|AAH41613.1| Transcription elongation factor A (SII), 3 [Homo sapiens]
gi|158261567|dbj|BAF82961.1| unnamed protein product [Homo sapiens]
gi|167773999|gb|ABZ92434.1| transcription elongation factor A (SII), 3 [synthetic construct]
gi|306921457|dbj|BAJ17808.1| transcription elongation factor A (SII), 3 [synthetic construct]
gi|410220416|gb|JAA07427.1| transcription elongation factor A (SII), 3 [Pan troglodytes]
gi|410263304|gb|JAA19618.1| transcription elongation factor A (SII), 3 [Pan troglodytes]
gi|410328351|gb|JAA33122.1| transcription elongation factor A (SII), 3 [Pan troglodytes]
Length = 348
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|303388621|ref|XP_003072544.1| DNA-directed RNA polymerase subunit M [Encephalitozoon intestinalis
ATCC 50506]
gi|303301685|gb|ADM11184.1| DNA-directed RNA polymerase subunit M [Encephalitozoon intestinalis
ATCC 50506]
Length = 104
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ + PK+ D + + V +KC +C F+++QTRSADEPMT FYKC I+
Sbjct: 41 IAMTPKKSDGFVDEDENLKFVSKCGKKC-ECGSEEVSFVELQTRSADEPMTIFYKC--IR 97
Query: 66 CGFRWRE 72
C W+E
Sbjct: 98 CKKVWKE 104
>gi|345793232|ref|XP_535071.3| PREDICTED: transcription elongation factor A protein 1 [Canis lupus
familiaris]
Length = 399
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>gi|410924055|ref|XP_003975497.1| PREDICTED: transcription elongation factor A protein 1-like
[Takifugu rubripes]
Length = 311
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C CG RW+
Sbjct: 273 CGKCKGKNCTYTQVQTRSADEPMTTFVFCSG--CGNRWK 309
>gi|395821365|ref|XP_003784013.1| PREDICTED: transcription elongation factor A protein 3 [Otolemur
garnettii]
Length = 326
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 287 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 324
>gi|221041960|dbj|BAH12657.1| unnamed protein product [Homo sapiens]
Length = 117
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 79 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 115
>gi|358367754|dbj|GAA84372.1| transcription elongation factor S-II [Aspergillus kawachii IFO
4308]
Length = 303
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I+ + +D M A E +T +C KC + + + QTRSADEPMT F C N C
Sbjct: 242 RIQKENMDKAM--VAQAERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMN--C 297
Query: 67 GFRWRE 72
G W++
Sbjct: 298 GKSWKQ 303
>gi|170036779|ref|XP_001846239.1| transcription elongation factor S-II [Culex quinquefasciatus]
gi|167879682|gb|EDS43065.1| transcription elongation factor S-II [Culex quinquefasciatus]
Length = 292
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 253 KCGKCKKRNCTYNQLQTRSADEPMTTFVLCN--ECGNRWK 290
>gi|118100673|ref|XP_417425.2| PREDICTED: transcription elongation factor A protein 2 [Gallus
gallus]
Length = 300
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 298
>gi|414587740|tpg|DAA38311.1| TPA: hypothetical protein ZEAMMB73_970745 [Zea mays]
Length = 906
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C C H A F Q R +E MT F+ CC+ CG RWRE
Sbjct: 867 RCNLCGHGEAVFFQAAAR-GEEGMTLFFVCCSPDCGHRWRE 906
>gi|357289731|gb|AET73044.1| transcription elongation factor A [Phaeocystis globosa virus 12T]
gi|357292531|gb|AET73867.1| transcription elongation factor A 1 [Phaeocystis globosa virus 14T]
Length = 173
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T E C KC+ + + Q+QTRSADE MTTF C I CG RW+
Sbjct: 131 TDEFTCFKCKENKCTYYQLQTRSADESMTTFVTC--IPCGNRWK 172
>gi|356509090|ref|XP_003523285.1| PREDICTED: putative transcription elongation factor S-II-like
[Glycine max]
Length = 368
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTT+ C + C RW+
Sbjct: 325 TDQFKCGRCGQRKTTYYQMQTRSADEPMTTYVTC--VVCNNRWK 366
>gi|344272860|ref|XP_003408247.1| PREDICTED: transcription elongation factor A protein 1-like
[Loxodonta africana]
Length = 380
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 277 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 313
>gi|426328285|ref|XP_004024930.1| PREDICTED: transcription elongation factor A protein 3 [Gorilla
gorilla gorilla]
Length = 327
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 288 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 325
>gi|213623950|gb|AAI70441.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 606 QCEKCKKKNCSYNQVQTRSADEPMTTFVLCN--ECGNRWK 643
>gi|147904545|ref|NP_001090166.1| transcription elongation factor A (SII), 3 [Xenopus laevis]
gi|10801727|dbj|BAB16755.1| transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 606 QCEKCKKKNCSYNQVQTRSADEPMTTFVLCN--ECGNRWK 643
>gi|255712113|ref|XP_002552339.1| KLTH0C02552p [Lachancea thermotolerans]
gi|238933718|emb|CAR21901.1| KLTH0C02552p [Lachancea thermotolerans CBS 6340]
Length = 125
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T EKCP+C + ++ +Q RSADE T FY C CG+R+R
Sbjct: 81 TIREKCPQCGNDEMHYHTLQLRSADEGATVFYTC--TSCGYRFR 122
>gi|170036777|ref|XP_001846238.1| transcription elongation factor S-II [Culex quinquefasciatus]
gi|167879681|gb|EDS43064.1| transcription elongation factor S-II [Culex quinquefasciatus]
Length = 301
Score = 45.8 bits (107), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 262 KCGKCKKRNCTYNQLQTRSSDEPMTTFVLCN--ECGNRWK 299
>gi|125557745|gb|EAZ03281.1| hypothetical protein OsI_25427 [Oryza sativa Indica Group]
Length = 373
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 330 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 371
>gi|225431922|ref|XP_002276956.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9 [Vitis
vinifera]
gi|147769002|emb|CAN66735.1| hypothetical protein VITISV_024186 [Vitis vinifera]
gi|296083263|emb|CBI22899.3| unnamed protein product [Vitis vinifera]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C +C H A F Q R +E MT F+ CCN CG+RWR+
Sbjct: 71 TKSVRCAQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGYRWRD 114
>gi|91834|pir||PS0180 transcription elongation factor S-II-related protein L122, hepatic
- mouse (fragment)
Length = 289
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 250 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 287
>gi|384499138|gb|EIE89629.1| hypothetical protein RO3G_14340 [Rhizopus delemar RA 99-880]
Length = 126
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+EKCP C HP + +Q RSADE T FY C KCG+++
Sbjct: 84 KEKCPSCGHPEMEYHTMQLRSADEGQTVFYNC--KKCGYKY 122
>gi|213625366|gb|AAI70443.1| Transcription elongation factor XSII-K1 [Xenopus laevis]
Length = 645
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 606 QCEKCKKKNCSYNQVQTRSADEPMTTFVLCN--ECGNRWK 643
>gi|395511158|ref|XP_003759828.1| PREDICTED: transcription elongation factor A protein 1 [Sarcophilus
harrisii]
Length = 349
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 311 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 347
>gi|297282476|ref|XP_001102747.2| PREDICTED: transcription elongation factor A protein 3-like isoform
2, partial [Macaca mulatta]
gi|402853350|ref|XP_003891359.1| PREDICTED: transcription elongation factor A protein 3-like,
partial [Papio anubis]
Length = 105
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 66 QCSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 103
>gi|297735532|emb|CBI18026.3| unnamed protein product [Vitis vinifera]
Length = 322
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 279 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 320
>gi|255713242|ref|XP_002552903.1| KLTH0D04136p [Lachancea thermotolerans]
gi|238934283|emb|CAR22465.1| KLTH0D04136p [Lachancea thermotolerans CBS 6340]
Length = 293
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 242 GATLERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EVCGNRWK 291
>gi|41055847|ref|NP_957280.1| transcription elongation factor A protein 2 [Danio rerio]
gi|28277993|gb|AAH46074.1| Transcription elongation factor A (SII), 2 [Danio rerio]
Length = 300
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 262 CGKCKGKNCTYTQVQTRSADEPMTTFVLCN--ECGNRWK 298
>gi|3347836|gb|AAC64680.1| transcription elongation factor S-II [Xenopus laevis]
Length = 121
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 82 QCEKCKKKNCSYNQVQTRSADEPMTTFVLC--NECGNRWK 119
>gi|403287385|ref|XP_003934929.1| PREDICTED: transcription elongation factor A protein 3 [Saimiri
boliviensis boliviensis]
Length = 348
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|357162059|ref|XP_003579291.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Brachypodium distachyon]
gi|326497375|dbj|BAK02272.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T E +C C H A F Q R +E MT F+ CCN CG RWRE
Sbjct: 71 TKEVRCAVCGHGEAVFFQATAR-GEEGMTLFFVCCNPSCGHRWRE 114
>gi|15224901|ref|NP_181390.1| transcript elongation factor IIS [Arabidopsis thaliana]
gi|3786016|gb|AAC67362.1| putative elongation factor [Arabidopsis thaliana]
gi|23297820|gb|AAN13033.1| putative elongation factor [Arabidopsis thaliana]
gi|26450199|dbj|BAC42218.1| putative elongation factor [Arabidopsis thaliana]
gi|330254456|gb|AEC09550.1| transcript elongation factor IIS [Arabidopsis thaliana]
Length = 378
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK K + G AA T + KC +C + + Q+QTRSADEPMTT+ C N C
Sbjct: 316 QIKEKALFDCERGLAA--KASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--C 371
Query: 67 GFRWR 71
W+
Sbjct: 372 DNHWK 376
>gi|326932945|ref|XP_003212571.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor A
protein 3-like [Meleagris gallopavo]
Length = 466
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + Q+QTRSADEPMTTF C +CG RW++
Sbjct: 362 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWKQ 400
>gi|448569001|ref|ZP_21638413.1| DNA-directed RNA polymerase subunit M2 [Haloferax lucentense DSM
14919]
gi|445725151|gb|ELZ76776.1| DNA-directed RNA polymerase subunit M2 [Haloferax lucentense DSM
14919]
Length = 109
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +C H +A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDECGHTKAWYTIKQTGSADEPPTRFFKC--QECGYRWRE 107
>gi|440897844|gb|ELR49454.1| Transcription elongation factor A protein 3, partial [Bos grunniens
mutus]
Length = 328
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 289 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 326
>gi|315046468|ref|XP_003172609.1| transcription elongation factor S-II [Arthroderma gypseum CBS
118893]
gi|311342995|gb|EFR02198.1| transcription elongation factor S-II [Arthroderma gypseum CBS
118893]
Length = 297
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 4/67 (5%)
Query: 6 LKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
LKI+ + +D M G E + +C KC + + + QTR+ADEPMT F C +
Sbjct: 235 LKIQKENMDKAMVGQP--ERSISKSLQCGKCGQRKVTYTEAQTRAADEPMTLFCTC--LA 290
Query: 66 CGFRWRE 72
CG WR+
Sbjct: 291 CGKSWRQ 297
>gi|119615454|gb|EAW95048.1| transcription elongation factor A (SII), 3, isoform CRA_a [Homo
sapiens]
Length = 79
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 40 QCSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 77
>gi|429217535|ref|YP_007175525.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
gi|429134064|gb|AFZ71076.1| transcription factor S, archaeal [Caldisphaera lagunensis DSM
15908]
Length = 124
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+CP+C + IQTR+ADEP T FY+C KCG+ WRE
Sbjct: 84 RCPRCGNDELLAWMIQTRAADEPPTRFYRC--TKCGYTWRE 122
>gi|17536493|ref|NP_495941.1| Protein T24H10.1 [Caenorhabditis elegans]
gi|1729914|sp|P52652.1|TFS2_CAEEL RecName: Full=Putative transcription elongation factor S-II;
AltName: Full=TFIIS
gi|3880168|emb|CAA90943.1| Protein T24H10.1 [Caenorhabditis elegans]
Length = 308
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 306
>gi|229094714|ref|NP_001153223.1| transcription elongation factor A protein 1 isoform 1 [Mus
musculus]
Length = 312
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 274 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 310
>gi|313126593|ref|YP_004036863.1| DNA-directed RNA polymerase subunit m [Halogeometricum borinquense
DSM 11551]
gi|448286744|ref|ZP_21477969.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
gi|312292958|gb|ADQ67418.1| DNA-directed RNA polymerase, subunit M [Halogeometricum borinquense
DSM 11551]
gi|445574121|gb|ELY28630.1| DNA-directed RNA polymerase, subunit m [Halogeometricum borinquense
DSM 11551]
Length = 107
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT KCP+C H RA + Q RSADE T F+ C ++C +WRE
Sbjct: 62 TTTVKCPECGHDRARYEMKQIRSADESETRFFTC--VECSHKWRE 104
>gi|224101577|ref|XP_002312337.1| predicted protein [Populus trichocarpa]
gi|222852157|gb|EEE89704.1| predicted protein [Populus trichocarpa]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C C+HP A F Q +R +E MT F+ CCN CG RWR+
Sbjct: 76 CTVCKHPEAVFFQATSR-GEEGMTLFFVCCNPNCGHRWRD 114
>gi|225560163|gb|EEH08445.1| transcription elongation factor S-II [Ajellomyces capsulatus
G186AR]
Length = 306
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I + +D M A E +T +C KC + + + QTRSADEPMT F C + C
Sbjct: 245 RIHKENMDKAM--VAKAERSISTSLQCGKCGQKKVTYTEAQTRSADEPMTLFCTC--VVC 300
Query: 67 GFRWRE 72
G WR+
Sbjct: 301 GKSWRQ 306
>gi|146422240|ref|XP_001487061.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
gi|146388182|gb|EDK36340.1| hypothetical protein PGUG_00438 [Meyerozyma guilliermondii ATCC
6260]
Length = 123
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTC--TGCGYRFR 120
>gi|91833|pir||JX0167 transcription elongation factor S-II-related protein L121, hepatic
- mouse
Length = 235
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 197 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 233
>gi|440494389|gb|ELQ76770.1| Transcription elongation factor TFIIS/Cofactor of enhancer-binding
protein Sp1 [Trachipleistophora hominis]
Length = 181
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 16 VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ G A V+T C KC+ + + QIQTRSADEPMTT+ C KCG W+
Sbjct: 128 IEGSQIAQMEVETDIFFCFKCKQRKCRYRQIQTRSADEPMTTYVFC---KCGNTWK 180
>gi|123473529|ref|XP_001319952.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902747|gb|EAY07729.1| hypothetical protein TVAG_118100 [Trichomonas vaginalis G3]
Length = 126
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE D + ++ +EKCP+C YF Q RSADE T FY+C I CG+R+
Sbjct: 67 KEADEITSKQGLARSI--IKEKCPECGEEGLYFTTAQIRSADEGQTIFYEC--IHCGYRF 122
Query: 71 RE 72
+
Sbjct: 123 SQ 124
>gi|37718881|gb|AAR01752.1| putative transcription elongation factor, 5'-partial [Oryza sativa
Japonica Group]
Length = 315
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 272 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 313
>gi|115456173|ref|NP_001051687.1| Os03g0815900 [Oryza sativa Japonica Group]
gi|28876018|gb|AAO60027.1| putative transcription elongation factor [Oryza sativa Japonica
Group]
gi|108711747|gb|ABF99542.1| transcription elongation factor S-II family protein, expressed
[Oryza sativa Japonica Group]
gi|113550158|dbj|BAF13601.1| Os03g0815900 [Oryza sativa Japonica Group]
gi|125546195|gb|EAY92334.1| hypothetical protein OsI_14059 [Oryza sativa Indica Group]
gi|125588382|gb|EAZ29046.1| hypothetical protein OsJ_13099 [Oryza sativa Japonica Group]
Length = 367
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTTF C N C W+
Sbjct: 324 TDQFKCGRCGQRKTTYYQLQTRSADEPMTTFVTCVN--CNNHWK 365
>gi|220592|dbj|BAA00768.1| unnamed protein product [Mus musculus]
Length = 235
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 197 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 233
>gi|308510188|ref|XP_003117277.1| hypothetical protein CRE_01901 [Caenorhabditis remanei]
gi|308242191|gb|EFO86143.1| hypothetical protein CRE_01901 [Caenorhabditis remanei]
Length = 308
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 306
>gi|18377737|gb|AAL67018.1| putative elongation factor [Arabidopsis thaliana]
Length = 378
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK K + G AA T + KC +C + + Q+QTRSADEPMTT+ C N C
Sbjct: 316 QIKEKALFDCERGLAA--KASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--C 371
Query: 67 GFRWR 71
W+
Sbjct: 372 DNHWK 376
>gi|355723564|gb|AES07932.1| transcription elongation factor A , 3 [Mustela putorius furo]
Length = 324
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 286 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 323
>gi|358058917|dbj|GAA95315.1| hypothetical protein E5Q_01972 [Mixia osmundae IAM 14324]
Length = 330
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 22/40 (55%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRSADEPMTTF C I C RW+
Sbjct: 291 KCGKCGKRECTYYQMQTRSADEPMTTF--VCCIVCNNRWK 328
>gi|357114510|ref|XP_003559043.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like
[Brachypodium distachyon]
Length = 114
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C C H A + Q R +E MT FY CCN+ CG RWRE
Sbjct: 71 TKSVRCTACGHGEAVYFQATAR-GEEGMTLFYVCCNLSCGNRWRE 114
>gi|298675051|ref|YP_003726801.1| transcription termination factor Tfs [Methanohalobium evestigatum
Z-7303]
gi|298288039|gb|ADI74005.1| transcription termination factor Tfs [Methanohalobium evestigatum
Z-7303]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ + TTE KC +C H AY+ Q RSADE T F+KC KCG WR+
Sbjct: 55 QGLPTTEAKCQECGHTVAYWWLRQLRSADESETRFFKC--TKCGATWRD 101
>gi|408389619|gb|EKJ69057.1| hypothetical protein FPSE_10756 [Fusarium pseudograminearum CS3096]
Length = 308
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTR+ADEPMTTF +C + CG RW+
Sbjct: 269 ECGKCKKKQVSYTQAQTRAADEPMTTFCEC--MACGNRWK 306
>gi|326931955|ref|XP_003212089.1| PREDICTED: transcription elongation factor A protein 2-like
[Meleagris gallopavo]
Length = 274
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 236 CGKCKKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 272
>gi|240278909|gb|EER42415.1| transcription elongation factor S-II [Ajellomyces capsulatus H143]
gi|325090170|gb|EGC43480.1| transcription elongation factor S-II [Ajellomyces capsulatus H88]
Length = 306
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I + +D M A E +T +C KC + + + QTRSADEPMT F C + C
Sbjct: 245 RIHKENMDKAM--VAKAERSISTSLQCGKCGQKKVTYTEAQTRSADEPMTLFCTC--VVC 300
Query: 67 GFRWRE 72
G WR+
Sbjct: 301 GKSWRQ 306
>gi|207345303|gb|EDZ72168.1| YGL043Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|323333438|gb|EGA74832.1| Dst1p [Saccharomyces cerevisiae AWRI796]
Length = 242
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 191 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 240
>gi|296207010|ref|XP_002750408.1| PREDICTED: transcription elongation factor A protein 3-like,
partial [Callithrix jacchus]
gi|332807943|ref|XP_001165502.2| PREDICTED: transcription elongation factor A protein 3-like
isoform 2, partial [Pan troglodytes]
Length = 75
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 36 QCSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 73
>gi|297666066|ref|XP_002811364.1| PREDICTED: transcription elongation factor A protein 3-like
[Pongo abelii]
Length = 74
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 35 QCSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 72
>gi|46108040|ref|XP_381078.1| hypothetical protein FG00902.1 [Gibberella zeae PH-1]
Length = 307
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + + Q QTR+ADEPMTTF +C + CG RW+
Sbjct: 268 ECGKCKKKQVSYTQAQTRAADEPMTTFCEC--MACGNRWK 305
>gi|82596259|ref|XP_726187.1| transcription factor [Plasmodium yoelii yoelii 17XNL]
gi|23481491|gb|EAA17752.1| putative transcription factor [Plasmodium yoelii yoelii]
Length = 383
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ T EKC C+H YF+ IQTRSADE T Y C N K
Sbjct: 338 NITYEKCTDCDHDFLYFVNIQTRSADEGSTIIYYCPNCK 376
>gi|448733443|ref|ZP_21715688.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
gi|445803177|gb|EMA53477.1| DNA-directed RNA-polymerase subunit M [Halococcus salifodinae DSM
8989]
Length = 106
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AA E T E +C C + RA++ QT SADEP T F+KC +CG RWR
Sbjct: 55 AADEGKPTAEVECDDCGNDRAWYTIKQTGSADEPPTRFFKC--TECGHRWR 103
>gi|448730238|ref|ZP_21712546.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
gi|445793406|gb|EMA43978.1| DNA-directed RNA-polymerase subunit M [Halococcus saccharolyticus
DSM 5350]
Length = 106
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AA E T E C +C + RA++ QT SADEP T F+KC +CG RWR
Sbjct: 55 AADEGKPTAEVACDECGNDRAWYTIKQTGSADEPPTRFFKC--TECGHRWR 103
>gi|395506561|ref|XP_003757600.1| PREDICTED: transcription elongation factor A protein 2 [Sarcophilus
harrisii]
Length = 300
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 298
>gi|301754936|ref|XP_002913385.1| PREDICTED: transcription elongation factor A protein 3-like
[Ailuropoda melanoleuca]
Length = 492
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 453 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 490
>gi|297823741|ref|XP_002879753.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
gi|297325592|gb|EFH56012.1| transcription factor S-II domain-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 378
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK K + G AA T + KC +C + + Q+QTRSADEPMTT+ C N C
Sbjct: 316 QIKEKALFDCERGLAA--KASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--C 371
Query: 67 GFRWR 71
W+
Sbjct: 372 DNHWK 376
>gi|157119415|ref|XP_001653370.1| transcription elongation factor s-ii [Aedes aegypti]
gi|108883153|gb|EAT47378.1| AAEL001496-PA [Aedes aegypti]
Length = 303
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 264 KCGKCKKRNCTYNQLQTRSSDEPMTTFVLCN--ECGHRWK 301
>gi|3288459|emb|CAA11393.1| transcription elongation factor TFIIS.h [Homo sapiens]
Length = 320
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 281 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 318
>gi|453082690|gb|EMF10737.1| transcription elongation factor S-II [Mycosphaerella populorum
SO2202]
Length = 312
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q QTRSADEP+TTF +C CG RW+
Sbjct: 274 CAKCKESKVSYSQAQTRSADEPLTTFCECTV--CGHRWK 310
>gi|367015144|ref|XP_003682071.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
gi|359749733|emb|CCE92860.1| hypothetical protein TDEL_0F00490 [Torulaspora delbrueckii]
Length = 125
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T EKCPKC + ++ +Q RSADE T FY C +CG+++R
Sbjct: 81 TIREKCPKCGNEEMHYHTLQLRSADEGATVFYTC--TQCGYKFR 122
>gi|341879127|gb|EGT35062.1| hypothetical protein CAEBREN_12817 [Caenorhabditis brenneri]
Length = 309
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 270 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 307
>gi|327271917|ref|XP_003220733.1| PREDICTED: transcription elongation factor A protein 2-like [Anolis
carolinensis]
Length = 327
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 297
>gi|324513389|gb|ADY45503.1| Transcription elongation factor S-II [Ascaris suum]
Length = 301
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 38/72 (52%), Gaps = 6/72 (8%)
Query: 1 MRCGRLKIKPKEID-HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
MR R K + I+ H M + E + KC KC + Q+QTRSADEPMTTF
Sbjct: 233 MRSQREKFTKQAIEEHQM---SVQEGTPSDMFKCGKCGKKNCTYTQVQTRSADEPMTTFV 289
Query: 60 KCCNIKCGFRWR 71
C +CG RW+
Sbjct: 290 FC--RECGNRWK 299
>gi|301620068|ref|XP_002939405.1| PREDICTED: transcription elongation factor A protein 3-like
[Xenopus (Silurana) tropicalis]
Length = 453
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 414 QCEKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 451
>gi|268532566|ref|XP_002631411.1| Hypothetical protein CBG03263 [Caenorhabditis briggsae]
Length = 305
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 266 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 303
>gi|45360521|ref|NP_988887.1| transcription elongation factor A (SII), 1 [Xenopus (Silurana)
tropicalis]
gi|37589996|gb|AAH59769.1| hypothetical protein MGC76031 [Xenopus (Silurana) tropicalis]
gi|89267843|emb|CAJ82979.1| transcription elongation factor A (SII), 1 [Xenopus (Silurana)
tropicalis]
Length = 304
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 266 CGKCKKKNCTYTQVQTRSADEPMTTFVFCN--ECGNRWK 302
>gi|344302756|gb|EGW33030.1| hypothetical protein SPAPADRAFT_150584 [Spathaspora passalidarum
NRRL Y-27907]
Length = 123
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMSYHTLQLRSADEGATVFYTC--TSCGYRFR 120
>gi|300712134|ref|YP_003737948.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|448295824|ref|ZP_21485887.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|299125817|gb|ADJ16156.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
gi|445583253|gb|ELY37585.1| putative DNA-directed RNA polymerase subunit M1 [Halalkalicoccus
jeotgali B3]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+E V+ A + TT +CP+C++ RAY+ Q RSADE T F+ C +C +W
Sbjct: 41 QEESEVIESGAENSGLPTTSAQCPECDNDRAYWYMQQIRSADESETRFFVC--TECEHKW 98
Query: 71 RE 72
RE
Sbjct: 99 RE 100
>gi|432867255|ref|XP_004071102.1| PREDICTED: transcription elongation factor A protein 2-like
[Oryzias latipes]
Length = 309
Score = 45.4 bits (106), Expect = 0.004, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRSADEPMTTF C CG RW+
Sbjct: 271 CSKCHGKNCTYTQVQTRSADEPMTTFVLCNG--CGNRWK 307
>gi|260836435|ref|XP_002613211.1| hypothetical protein BRAFLDRAFT_278052 [Branchiostoma floridae]
gi|229298596|gb|EEN69220.1| hypothetical protein BRAFLDRAFT_278052 [Branchiostoma floridae]
Length = 125
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ ++ A + TE+ +CPKC H A F Q QT A++ M +Y C CG RW
Sbjct: 64 ELTQIVADVAQDPTLPRTEDHQCPKCGHREAVFFQSQTTKAEDAMRLYYVCTAPNCGHRW 123
Query: 71 RE 72
E
Sbjct: 124 TE 125
>gi|355572990|ref|ZP_09043958.1| transcription termination factor Tfs [Methanolinea tarda NOBI-1]
gi|354824002|gb|EHF08261.1| transcription termination factor Tfs [Methanolinea tarda NOBI-1]
Length = 103
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 25 NVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ T KCPKCEH A++ Q R+ADE F++CC +CG WRE
Sbjct: 56 TLPTIAVKCPKCEHNLAFWWLRQLRAADESEVRFFRCC--ECGHTWRE 101
>gi|260942901|ref|XP_002615749.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238851039|gb|EEQ40503.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 123
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTC--TGCGYRFR 120
>gi|393904020|gb|EJD73631.1| transcription elongation factor S-II [Loa loa]
Length = 310
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 271 KCGKCGKKNCTYTQVQTRSADEPMTTFVFC--RECGNRWK 308
>gi|348529301|ref|XP_003452152.1| PREDICTED: hypothetical protein LOC100695418 [Oreochromis
niloticus]
Length = 620
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 581 QCGKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 618
>gi|330834287|ref|YP_004409015.1| DNA-directed RNA polymerase subunit M [Metallosphaera cuprina Ar-4]
gi|329566426|gb|AEB94531.1| DNA-directed RNA polymerase, subunit M [Metallosphaera cuprina
Ar-4]
Length = 110
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C KC + YF +QTR+ADEP T FYKC +CG WRE
Sbjct: 71 CSKCGNDEVYFWMLQTRAADEPPTRFYKC--TRCGKVWRE 108
>gi|147905221|ref|NP_001081593.1| TFIIS elongation factor [Xenopus laevis]
gi|1325970|emb|CAA66256.1| TFIIS elongation factor [Xenopus laevis]
gi|50414699|gb|AAH77765.1| XTFIIS.oB protein [Xenopus laevis]
Length = 303
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 265 CGKCKKKNCTYTQVQTRSADEPMTTFVFCN--ECGNRWK 301
>gi|410905253|ref|XP_003966106.1| PREDICTED: transcription elongation factor A protein 3-like
[Takifugu rubripes]
Length = 502
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 447 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 484
>gi|295672377|ref|XP_002796735.1| transcription elongation factor S-II [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226283715|gb|EEH39281.1| transcription elongation factor S-II [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 306
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I+ + +D M A E +T +C KC + + + QTRSADEPMT F C + C
Sbjct: 245 RIQKENMDKAM--VAKAERSISTSLQCGKCGQKKVTYTEAQTRSADEPMTLFCTC--VVC 300
Query: 67 GFRWRE 72
G WR+
Sbjct: 301 GKSWRQ 306
>gi|225683287|gb|EEH21571.1| transcription elongation factor S-II [Paracoccidioides brasiliensis
Pb03]
gi|226288233|gb|EEH43745.1| transcription elongation factor S-II [Paracoccidioides brasiliensis
Pb18]
Length = 306
Score = 45.4 bits (106), Expect = 0.005, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+I+ + +D M A E +T +C KC + + + QTRSADEPMT F C + C
Sbjct: 245 RIQKENMDKAM--VAKAERSISTSLQCGKCGQKKVTYTEAQTRSADEPMTLFCTC--VVC 300
Query: 67 GFRWRE 72
G WR+
Sbjct: 301 GKSWRQ 306
>gi|170579780|ref|XP_001894980.1| transcription elongation factor S-II (TFIIS) [Brugia malayi]
gi|158598237|gb|EDP36172.1| transcription elongation factor S-II (TFIIS), putative [Brugia
malayi]
Length = 305
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 266 KCGKCGKKNCTYTQVQTRSADEPMTTFVFCR--ECGNRWK 303
>gi|448546053|ref|ZP_21626380.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-646]
gi|448548127|ref|ZP_21627471.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-645]
gi|448557232|ref|ZP_21632585.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-644]
gi|445703399|gb|ELZ55330.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-646]
gi|445714534|gb|ELZ66294.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-644]
gi|445714829|gb|ELZ66587.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. ATCC BAA-645]
Length = 109
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C C H +A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDDCGHTKAWYTIKQTGSADEPPTRFFKC--QECGYRWRE 107
>gi|432094693|gb|ELK26173.1| Transcription elongation factor A protein 1 [Myotis davidii]
Length = 376
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 325 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 361
>gi|335433990|ref|ZP_08558799.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|335438373|ref|ZP_08561120.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334892322|gb|EGM30558.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
gi|334898216|gb|EGM36331.1| transcription termination factor Tfs [Halorhabdus tiamatea SARL4B]
Length = 106
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TTE CP+C + RA++ Q RSADE T F+ C +CG +WRE
Sbjct: 61 TTEAHCPECGNDRAFWEMKQIRSADESETRFFTC--TECGHKWRE 103
>gi|292656751|ref|YP_003536648.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|448290754|ref|ZP_21481900.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|448565449|ref|ZP_21636316.1| DNA-directed RNA polymerase subunit M2 [Haloferax prahovense DSM
18310]
gi|291372919|gb|ADE05146.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|445578125|gb|ELY32540.1| DNA-directed RNA polymerase subunit M2 [Haloferax volcanii DS2]
gi|445715193|gb|ELZ66949.1| DNA-directed RNA polymerase subunit M2 [Haloferax prahovense DSM
18310]
Length = 109
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C C H +A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDDCGHTKAWYTIKQTGSADEPPTRFFKC--QECGYRWRE 107
>gi|448583401|ref|ZP_21646757.1| DNA-directed RNA polymerase subunit M2 [Haloferax gibbonsii ATCC
33959]
gi|445729630|gb|ELZ81225.1| DNA-directed RNA polymerase subunit M2 [Haloferax gibbonsii ATCC
33959]
Length = 109
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C C H +A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDDCGHTKAWYTIKQTGSADEPPTRFFKC--QECGYRWRE 107
>gi|74180064|dbj|BAE36564.1| unnamed protein product [Mus musculus]
Length = 22
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 51 ADEPMTTFYKCCNIKCGFRWRE 72
ADEPMTTFYKCCN +CG RWR+
Sbjct: 1 ADEPMTTFYKCCNAQCGHRWRD 22
>gi|321466977|gb|EFX77969.1| hypothetical protein DAPPUDRAFT_53771 [Daphnia pulex]
Length = 299
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + T KC KC + Q+QTRSADEPMTTF C CG RW+
Sbjct: 249 ATVQGTQTDLLKCGKCGKRNCTYNQVQTRSADEPMTTFVLCN--ACGNRWK 297
>gi|433433110|ref|ZP_20407843.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. BAB2207]
gi|448600696|ref|ZP_21656075.1| DNA-directed RNA polymerase subunit M2 [Haloferax alexandrinus JCM
10717]
gi|448623014|ref|ZP_21669663.1| DNA-directed RNA polymerase subunit M2 [Haloferax denitrificans
ATCC 35960]
gi|432193278|gb|ELK50029.1| DNA-directed RNA polymerase subunit M2 [Haloferax sp. BAB2207]
gi|445734709|gb|ELZ86265.1| DNA-directed RNA polymerase subunit M2 [Haloferax alexandrinus JCM
10717]
gi|445753522|gb|EMA04939.1| DNA-directed RNA polymerase subunit M2 [Haloferax denitrificans
ATCC 35960]
Length = 109
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C C H +A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDDCGHTKAWYTIKQTGSADEPPTRFFKC--QECGYRWRE 107
>gi|20089011|ref|NP_615086.1| transcription factor S [Methanosarcina acetivorans C2A]
gi|19913865|gb|AAM03566.1| archaeal transcription factor S [Methanosarcina acetivorans C2A]
Length = 104
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ KI E+ + G + + TT KCP+C + A + Q RSADE T F+KC
Sbjct: 39 KAKIDDHEVVVLEGEQTS--GLPTTNVKCPECGNNTAAWWLRQLRSADESETRFFKC--T 94
Query: 65 KCGFRWRE 72
KCGF WRE
Sbjct: 95 KCGFTWRE 102
>gi|302757165|ref|XP_002962006.1| hypothetical protein SELMODRAFT_437865 [Selaginella moellendorffii]
gi|302775328|ref|XP_002971081.1| hypothetical protein SELMODRAFT_441410 [Selaginella moellendorffii]
gi|300161063|gb|EFJ27679.1| hypothetical protein SELMODRAFT_441410 [Selaginella moellendorffii]
gi|300170665|gb|EFJ37266.1| hypothetical protein SELMODRAFT_437865 [Selaginella moellendorffii]
Length = 303
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ T + KC KC + Q QTRSADEPMTT+ C N C RW+
Sbjct: 256 QEATTDQFKCGKCGRRECTYFQKQTRSADEPMTTYVTCVN--CNNRWK 301
>gi|290559792|gb|EFD93116.1| Transcription factor TFIIS [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 80
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 27/41 (65%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+CPKC+ + QTR++DEP T FYKC N CG+ WRE
Sbjct: 40 ECPKCKEKKIVSWMEQTRASDEPPTRFYKCVN--CGYTWRE 78
>gi|254585479|ref|XP_002498307.1| ZYRO0G07194p [Zygosaccharomyces rouxii]
gi|238941201|emb|CAR29374.1| ZYRO0G07194p [Zygosaccharomyces rouxii]
Length = 298
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 260 CGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 296
>gi|156040461|ref|XP_001587217.1| transcription elongation factor s-ii [Sclerotinia sclerotiorum
1980]
gi|154696303|gb|EDN96041.1| transcription elongation factor s-ii [Sclerotinia sclerotiorum 1980
UF-70]
Length = 301
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 263 CGKCHQKKVSYSQAQTRSADEPMTTFCECQV--CGHRWK 299
>gi|348544613|ref|XP_003459775.1| PREDICTED: transcription elongation factor A protein 2-like
[Oreochromis niloticus]
Length = 308
Score = 45.1 bits (105), Expect = 0.005, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRSADEPMTTF C + CG RW+
Sbjct: 265 CSKCHGKSCTYTQVQTRSADEPMTTFVLCND--CGNRWK 301
>gi|331242717|ref|XP_003334004.1| hypothetical protein PGTG_15734 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309312994|gb|EFP89585.1| hypothetical protein PGTG_15734 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 382
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A + +T +C +C + + Q+QTRSADEPMTTF C N C RW+
Sbjct: 331 GAGPQQAETDAFRCARCGQRKCTYYQMQTRSADEPMTTFVTCVNCNC--RWK 380
>gi|348501107|ref|XP_003438112.1| PREDICTED: transcription elongation factor A protein 1-like
[Oreochromis niloticus]
Length = 311
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 273 CGKCKGKSCTYTQVQTRSADEPMTTFVFCN--ECGNRWK 309
>gi|429965603|gb|ELA47600.1| transcription elongation factor S-II [Vavraia culicis
'floridensis']
Length = 181
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 16 VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+ G A V+T C KC+ + + QIQTRSADEPMTT+ C KCG W+
Sbjct: 128 IEGSQIAQMEVETDIFFCFKCKQRKCRYRQIQTRSADEPMTTYVFC---KCGNTWK 180
>gi|3347834|gb|AAC64679.1| transcription elongation factor S-II [Xenopus laevis]
Length = 289
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 250 QCEKCKKKNCSYNQVQTRSADEPMTTFVLC--NECGNRWK 287
>gi|396081166|gb|AFN82784.1| transcription elongation factor S-II [Encephalitozoon romaleae
SJ-2008]
Length = 252
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 3/40 (7%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC +C + + Q+QTRS DEPMTTF C +CG +WR
Sbjct: 214 KCNRCGERKCSYRQLQTRSGDEPMTTFVTC---ECGNKWR 250
>gi|427797651|gb|JAA64277.1| Putative transcription elongation factor a sii 1, partial
[Rhipicephalus pulchellus]
Length = 292
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 5/58 (8%)
Query: 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
DH M + T KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 238 DHQMATTGGTK---TDLLKCGKCRKNNCTYNQVQTRSADEPMTTFCFCN--ECGHRWK 290
>gi|312088616|ref|XP_003145930.1| hypothetical protein LOAG_10358 [Loa loa]
Length = 241
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/40 (55%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 202 KCGKCGKKNCTYTQVQTRSADEPMTTFVFC--RECGNRWK 239
>gi|288559429|ref|YP_003422915.1| transcription factor S Tfs2 [Methanobrevibacter ruminantium M1]
gi|288542139|gb|ADC46023.1| transcription factor S Tfs2 [Methanobrevibacter ruminantium M1]
Length = 131
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T E CPKC H RA + +QTRSADE T F+ C KC +WR
Sbjct: 87 TVREICPKCGHDRASYELLQTRSADEAPTRFFTC--EKCHHKWR 128
>gi|340345736|ref|ZP_08668868.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
gi|339520877|gb|EGP94600.1| Transcription termination factor Tfs [Candidatus Nitrosoarchaeum
koreensis MY1]
Length = 103
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 15 HVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+V+ E + T + +C KC + A + +QTRSADEP T FY+C KC + WR
Sbjct: 46 NVLAENEGTETLPTIKIECEKCGNDEAVWWMLQTRSADEPTTQFYRCS--KCRYTWR 100
>gi|221118936|ref|XP_002157610.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB9-like [Hydra
magnipapillata]
Length = 131
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 11 KEIDHVMGGAAAWENV-DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
E+ ++G + TT+ CPKC H A F Q Q+ AD M +Y CC + C +
Sbjct: 70 NELSQIIGDVVTDPTLPKTTDHPCPKCGHNEAVFFQSQSNKADH-MRLYYVCCGMNCQHK 128
Query: 70 WRE 72
W E
Sbjct: 129 WSE 131
>gi|449274195|gb|EMC83478.1| Transcription elongation factor A protein 2, partial [Columba
livia]
Length = 282
Score = 45.1 bits (105), Expect = 0.006, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 246 CGKCKKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 282
>gi|395829391|ref|XP_003787843.1| PREDICTED: transcription elongation factor A protein 2 [Otolemur
garnettii]
Length = 356
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF CN +CG RW+
Sbjct: 318 CSKCRKKNCTYTQVQTRSSDEPMTTFV-VCN-ECGNRWK 354
>gi|226372852|gb|ACO52051.1| Transcription elongation factor A protein 1 [Rana catesbeiana]
Length = 306
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C CG RW+
Sbjct: 268 CGKCKMKNCTYTQVQTRSADEPMTTFVFCNT--CGNRWK 304
>gi|242050872|ref|XP_002463180.1| hypothetical protein SORBIDRAFT_02g039195 [Sorghum bicolor]
gi|241926557|gb|EER99701.1| hypothetical protein SORBIDRAFT_02g039195 [Sorghum bicolor]
Length = 72
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 12 EIDHVMGGAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E V+ AA ++ T +C C HP A F Q T S ++ MT ++ CCN CG RW
Sbjct: 12 EPKDVLKDAATDPSLPRTRSVRCYNCNHPEAAFFQAPT-SGEQAMTLYFICCNPSCGHRW 70
Query: 71 RE 72
R+
Sbjct: 71 RD 72
>gi|47215885|emb|CAG12277.1| unnamed protein product [Tetraodon nigroviridis]
Length = 311
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C CG RW+
Sbjct: 273 CGKCKGKNCTYTQVQTRSADEPMTTFVFCNG--CGNRWK 309
>gi|291233503|ref|XP_002736692.1| PREDICTED: transcription elongation factor A 1-like [Saccoglossus
kowalevskii]
Length = 138
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T+ KC KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 95 TSLLKCGKCKKRNCTYNQVQTRSADEPMTTFVFCN--ECGNRWK 136
>gi|375281755|gb|AFA44930.1| transcription elongation factor-SII [Common midwife toad
ranavirus]
Length = 92
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
V+ KCP C R + +Q QTRSADEPMT F C +CG RW
Sbjct: 48 VEEGTVKCPGCGSGRVHALQRQTRSADEPMTLFAMCS--ECGKRW 90
>gi|291399294|ref|XP_002716071.1| PREDICTED: KIAA1710 protein-like [Oryctolagus cuniculus]
Length = 789
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 172 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 209
>gi|255556342|ref|XP_002519205.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
gi|223541520|gb|EEF43069.1| DNA-directed RNA polymerase II, putative [Ricinus communis]
Length = 266
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C C+HP A F Q R +E MT F+ CCN CG RWR+
Sbjct: 223 TKAVECQVCKHPEAVFFQATAR-GEEGMTLFFVCCNPICGHRWRD 266
>gi|453081704|gb|EMF09752.1| DNA-directed RNA polymerase I 13.7 kDa polypeptide [Mycosphaerella
populorum SO2202]
Length = 123
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N + CP+C P YF +Q RSADE T FY C +CG R++E
Sbjct: 75 KNGQKISQTCPECASPEMYFTALQLRSADEGTTVFYVC--HECGHRYKE 121
>gi|156355951|ref|XP_001623697.1| predicted protein [Nematostella vectensis]
gi|156210420|gb|EDO31597.1| predicted protein [Nematostella vectensis]
Length = 129
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCC 62
++ + E+ ++G A + TE+ +CP+C H + F Q Q+ AD+ M +Y C
Sbjct: 61 NKITHEVNELTQIVGDVIADPTLPRTEDHECPRCGHRESVFFQSQSSKADQ-MVLYYVCT 119
Query: 63 NIKCGFRWRE 72
++ CG +W E
Sbjct: 120 SVDCGHKWTE 129
>gi|73668417|ref|YP_304432.1| DNA-directed RNA polymerase subunit M [Methanosarcina barkeri str.
Fusaro]
gi|72395579|gb|AAZ69852.1| DNA-directed RNA polymerase, subunit M [Methanosarcina barkeri str.
Fusaro]
Length = 104
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI EI + G + + TT KCP+C + A + Q RSADE T F+KC KC
Sbjct: 41 KIDDHEIVVLEGEQIS--GLPTTSVKCPECGNNTAAWWLRQLRSADESETRFFKC--TKC 96
Query: 67 GFRWRE 72
GF WRE
Sbjct: 97 GFTWRE 102
>gi|335307331|ref|XP_003360800.1| PREDICTED: LOW QUALITY PROTEIN: transcription elongation factor A
protein 3-like [Sus scrofa]
Length = 388
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 349 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 386
>gi|448592642|ref|ZP_21651749.1| DNA-directed RNA polymerase subunit M2 [Haloferax elongans ATCC
BAA-1513]
gi|445731647|gb|ELZ83231.1| DNA-directed RNA polymerase subunit M2 [Haloferax elongans ATCC
BAA-1513]
Length = 109
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +C H A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDECGHTEAWYTIKQTASADEPPTRFFKC--QECGYRWRE 107
>gi|110669074|ref|YP_658885.1| DNA-directed RNA polymerase subunit M2 [Haloquadratum walsbyi DSM
16790]
gi|109626821|emb|CAJ53289.1| transcription elongation factor TFS [Haloquadratum walsbyi DSM
16790]
gi|148508173|gb|ABQ75964.1| DNA-directed RNA polymerase subunit M2 [uncultured haloarchaeon]
Length = 106
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +CEH A++ QT SADEP T F+KC +CG+RWR+
Sbjct: 67 CDECEHTVAWYTIKQTGSADEPPTRFFKC--KECGYRWRD 104
>gi|67968616|dbj|BAE00667.1| unnamed protein product [Macaca fascicularis]
Length = 117
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 79 CGKCKKKNCTYTQVQTRSADEPMTTFVVC--NECGNRWK 115
>gi|440635961|gb|ELR05880.1| transcription elongation factor S-II [Geomyces destructans
20631-21]
Length = 301
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC +C + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 262 KCGRCGQKKVSYSQAQTRSADEPMTTFCECT--VCGNRWK 299
>gi|448609204|ref|ZP_21660483.1| DNA-directed RNA polymerase subunit M1 [Haloferax mucosum ATCC
BAA-1512]
gi|445747581|gb|ELZ99037.1| DNA-directed RNA polymerase subunit M1 [Haloferax mucosum ATCC
BAA-1512]
Length = 96
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT+ CPKCEH A + Q RSADE T F+ C ++C +WRE
Sbjct: 51 TTKAICPKCEHDVARYEMKQIRSADESETRFFTC--VECDHKWRE 93
>gi|448578279|ref|ZP_21643714.1| DNA-directed RNA polymerase subunit M2 [Haloferax larsenii JCM
13917]
gi|445726820|gb|ELZ78436.1| DNA-directed RNA polymerase subunit M2 [Haloferax larsenii JCM
13917]
Length = 109
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +C H A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDECGHTEAWYTIKQTASADEPPTRFFKC--QECGYRWRE 107
>gi|387593244|gb|EIJ88268.1| hypothetical protein NEQG_01712 [Nematocida parisii ERTm3]
gi|387596044|gb|EIJ93666.1| hypothetical protein NEPG_01238 [Nematocida parisii ERTm1]
Length = 102
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP+C +A + Q+QTRSADEPMT F C +C WRE
Sbjct: 65 CPECSFTKANYYQMQTRSADEPMTIFNTC--TRCKHTWRE 102
>gi|307352937|ref|YP_003893988.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
gi|307156170|gb|ADN35550.1| transcription termination factor Tfs [Methanoplanus petrolearius
DSM 11571]
Length = 104
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT +CP+C H AY+ Q RSADE F+KC +KC + WRE
Sbjct: 60 TTNVRCPECGHDTAYWWLRQLRSADESEVRFFKC--VKCKYTWRE 102
>gi|302927325|ref|XP_003054473.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256735414|gb|EEU48760.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 303
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 28/40 (70%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C +C+ + + Q QTR+ADEPMTTF +C + CG RW+
Sbjct: 264 QCGRCKKKQVSYTQAQTRAADEPMTTFCEC--MACGHRWK 301
>gi|150400651|ref|YP_001324417.1| transcription termination factor Tfs [Methanococcus aeolicus
Nankai-3]
gi|150013354|gb|ABR55805.1| transcription termination factor Tfs [Methanococcus aeolicus
Nankai-3]
Length = 103
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT +CP C + Y+ QTR ADEP T FYKC KCG WRE
Sbjct: 59 TTRIECPNCGNMEVYWWLQQTRCADEPETRFYKC--TKCGHTWRE 101
>gi|452819596|gb|EME26652.1| transcription elongation factor S-II [Galdieria sulphuraria]
Length = 204
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 22 AWENVDTT----EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ ++VDT E +C KC + F Q+QTRSADEPMTTF C + CG RW++
Sbjct: 152 SKKSVDTQTFSEEFQCRKCGLRKCSFFQMQTRSADEPMTTFVTCHH--CGNRWKQ 204
>gi|302658771|ref|XP_003021085.1| hypothetical protein TRV_04798 [Trichophyton verrucosum HKI 0517]
gi|291184964|gb|EFE40467.1| hypothetical protein TRV_04798 [Trichophyton verrucosum HKI 0517]
Length = 297
Score = 44.7 bits (104), Expect = 0.006, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M G E + +C KC + + + QTRSADEPMT F C + C
Sbjct: 236 KIQKENMDKAMVGQP--ERSISKSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTC--LAC 291
Query: 67 GFRWRE 72
G WR+
Sbjct: 292 GKSWRQ 297
>gi|365981931|ref|XP_003667799.1| hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
gi|343766565|emb|CCD22556.1| hypothetical protein NDAI_0A03990 [Naumovozyma dairenensis CBS 421]
Length = 126
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 23 WENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E+ +EKCPKC + ++ +Q RSADE T FY C CG+++R
Sbjct: 77 LEDGAVIKEKCPKCGNDEMHYHTLQLRSADEGATVFYTC--TSCGYKFR 123
>gi|389848075|ref|YP_006350314.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei
ATCC 33500]
gi|388245381|gb|AFK20327.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei
ATCC 33500]
Length = 100
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +C H A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 61 CDECGHTEAWYTIKQTASADEPPTRFFKC--KECGYRWRE 98
>gi|327289455|ref|XP_003229440.1| PREDICTED: transcription elongation factor A protein 3-like [Anolis
carolinensis]
Length = 404
Score = 44.7 bits (104), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCGKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>gi|313768224|ref|YP_004061904.1| hypothetical protein MpV1_021c [Micromonas sp. RCC1109 virus MpV1]
gi|312598920|gb|ADQ90944.1| hypothetical protein MpV1_021c [Micromonas sp. RCC1109 virus MpV1]
Length = 171
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC +C+ + + Q+QTRSADEPMTTF C N C W+
Sbjct: 133 KCGRCKSMKTTYYQLQTRSADEPMTTFVSCLN--CDRNWK 170
>gi|242795417|ref|XP_002482584.1| transcription elongation factor S-II [Talaromyces stipitatus ATCC
10500]
gi|218719172|gb|EED18592.1| transcription elongation factor S-II [Talaromyces stipitatus ATCC
10500]
Length = 296
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI + +D M A E ++ +C KC + + + QTRSADEPMT F C N C
Sbjct: 235 KIHKENMDKAM--VAQAERSISSSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCLN--C 290
Query: 67 GFRWRE 72
G W++
Sbjct: 291 GKSWKQ 296
>gi|322369843|ref|ZP_08044405.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
gi|320550179|gb|EFW91831.1| putative DNA-directed RNA polymerase subunit M1 [Haladaptatus
paucihalophilus DX253]
Length = 103
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
+ +E ++ + TTE +CP C++ +AY+ Q RSADE T F+ C +C
Sbjct: 39 EDQEASEIIESGGGSNGLPTTEVQCPNCDNDQAYWYLQQIRSADESETRFFVC--TECEH 96
Query: 69 RWRE 72
+WRE
Sbjct: 97 KWRE 100
>gi|440295289|gb|ELP88202.1| transcription elongation factor S-II, putative [Entamoeba invadens
IP1]
Length = 169
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
CPKC + Q+Q RSADEPMT C N CGF W+
Sbjct: 130 CPKCSSRKIQETQVQLRSADEPMTRILTCAN--CGFGWK 166
>gi|367015614|ref|XP_003682306.1| hypothetical protein TDEL_0F02840 [Torulaspora delbrueckii]
gi|359749968|emb|CCE93095.1| hypothetical protein TDEL_0F02840 [Torulaspora delbrueckii]
Length = 295
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 244 GATVERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EVCGNRWK 293
>gi|348570796|ref|XP_003471183.1| PREDICTED: zinc finger protein 436-like [Cavia porcellus]
Length = 856
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 314 QCSKCKKKNCTYNQMQTRSADEPMTTFVLC--NECGHRWK 351
>gi|405953428|gb|EKC21091.1| DNA-directed RNA polymerase II subunit RPB9 [Crassostrea gigas]
Length = 127
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ ++G A + TE+ CPKC H + F Q + A+E M +Y C N +C RW
Sbjct: 66 ELTQIIGDVIADPTLPRTEDHPCPKCAHKESVFFQSHSTKAEEGMRLYYVCTNPQCVHRW 125
Query: 71 RE 72
E
Sbjct: 126 TE 127
>gi|326472154|gb|EGD96163.1| transcription elongation factor S-II [Trichophyton tonsurans CBS
112818]
gi|326476985|gb|EGE00995.1| transcription elongation factor S-II [Trichophyton equinum CBS
127.97]
Length = 297
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M G E + +C KC + + + QTRSADEPMT F C + C
Sbjct: 236 KIQKENMDKAMVGQP--ERSISKSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTC--LAC 291
Query: 67 GFRWRE 72
G WR+
Sbjct: 292 GKSWRQ 297
>gi|302507047|ref|XP_003015480.1| hypothetical protein ARB_06606 [Arthroderma benhamiae CBS 112371]
gi|291179052|gb|EFE34840.1| hypothetical protein ARB_06606 [Arthroderma benhamiae CBS 112371]
Length = 297
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M G E + +C KC + + + QTRSADEPMT F C + C
Sbjct: 236 KIQKENMDKAMVGQP--ERSISKSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTC--LAC 291
Query: 67 GFRWRE 72
G WR+
Sbjct: 292 GKSWRQ 297
>gi|221484964|gb|EEE23254.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii GT1]
Length = 348
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
+E C C H A+F Q RSADE MT Y+C +KCG R
Sbjct: 306 KETCEACGHGEAFFSTFQARSADEGMTVMYEC--VKCGHR 343
>gi|45358992|ref|NP_988549.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
S2]
gi|340624740|ref|YP_004743193.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
X1]
gi|45047867|emb|CAF30985.1| Transcription factor TFIIS:DNA-directed RNA polymerase, M/15 kDa
subunit [Methanococcus maripaludis S2]
gi|339905008|gb|AEK20450.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
X1]
Length = 105
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 24 ENVDT---TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
ENVDT T +CP C + A++ QTR ADEP T FYKC KC WRE
Sbjct: 54 ENVDTLPTTRIECPNCGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
>gi|325183258|emb|CCA17716.1| transcription elongation factor putative [Albugo laibachii Nc14]
gi|325183904|emb|CCA18362.1| transcription elongation factor putative [Albugo laibachii Nc14]
Length = 309
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C +C+ + Q QTRSADEPMT F +C N CG RW+
Sbjct: 272 CGRCKSSKTSNTQKQTRSADEPMTVFVQCHN--CGNRWK 308
>gi|296805870|ref|XP_002843759.1| transcription elongation factor S-II [Arthroderma otae CBS 113480]
gi|238845061|gb|EEQ34723.1| transcription elongation factor S-II [Arthroderma otae CBS 113480]
Length = 297
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M G E + +C KC + + + QTRSADEPMT F C + C
Sbjct: 236 KIQKENMDKAMVGQP--ERSISKSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTC--LAC 291
Query: 67 GFRWRE 72
G WR+
Sbjct: 292 GKSWRQ 297
>gi|327305353|ref|XP_003237368.1| transcription elongation factor S-II [Trichophyton rubrum CBS
118892]
gi|326460366|gb|EGD85819.1| transcription elongation factor S-II [Trichophyton rubrum CBS
118892]
Length = 297
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 25/66 (37%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M G E + +C KC + + + QTRSADEPMT F C + C
Sbjct: 236 KIQKENMDKAMVGQP--ERSISKSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTC--LAC 291
Query: 67 GFRWRE 72
G WR+
Sbjct: 292 GKSWRQ 297
>gi|237836081|ref|XP_002367338.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|211965002|gb|EEB00198.1| RNA polymerase, putative [Toxoplasma gondii ME49]
gi|221505981|gb|EEE31616.1| DNA-directed RNA polymerase I, putative [Toxoplasma gondii VEG]
Length = 348
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 20/40 (50%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
+E C C H A+F Q RSADE MT Y+C +KCG R
Sbjct: 306 KETCEACGHGEAFFSTFQARSADEGMTVMYEC--VKCGHR 343
>gi|448738512|ref|ZP_21720536.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
gi|445801640|gb|EMA51969.1| DNA-directed RNA-polymerase subunit M [Halococcus thailandensis JCM
13552]
Length = 106
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 21 AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
AA E T E +C +C RA++ QT SADEP T F+KC +CG RWR
Sbjct: 55 AADEGKPTAEVECEECGAERAWYTIKQTGSADEPPTRFFKC--TECGHRWR 103
>gi|68066450|ref|XP_675208.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56494258|emb|CAH95322.1| conserved hypothetical protein [Plasmodium berghei]
Length = 274
Score = 44.7 bits (104), Expect = 0.007, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 24/39 (61%)
Query: 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIK 65
+ T EKC C+H YF+ IQTRSADE T Y C N K
Sbjct: 229 NITYEKCTDCDHDFLYFVNIQTRSADEGSTIIYFCPNCK 267
>gi|448618173|ref|ZP_21666518.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei ATCC
33500]
gi|445747728|gb|ELZ99183.1| DNA-directed RNA polymerase subunit M2 [Haloferax mediterranei ATCC
33500]
Length = 109
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +C H A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDECGHTEAWYTIKQTASADEPPTRFFKC--KECGYRWRE 107
>gi|18656509|gb|AAL77810.1|AF389451_17 putative transcription elongation factor SII [Tiger frog virus]
Length = 92
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
V+ KCP C R + +Q QTRSADEPMT F C +CG RW
Sbjct: 48 VEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCS--ECGKRW 90
>gi|170115725|ref|XP_001889056.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164636004|gb|EDR00304.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 121
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%)
Query: 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
EKCP C H AY ++Q RSADE T FY C + K G+R
Sbjct: 80 EKCPSCGHLEAYSKEMQLRSADEGSTIFYTCVSCKHGWR 118
>gi|154320754|ref|XP_001559693.1| transcription elongation factor S-II [Botryotinia fuckeliana
B05.10]
gi|347838992|emb|CCD53564.1| similar to transcription elongation factor s-ii [Botryotinia
fuckeliana]
Length = 301
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + + Q QTRSADEPMTTF +C CG RW+
Sbjct: 263 CGKCGQKKVSYSQAQTRSADEPMTTFCECQV--CGHRWK 299
>gi|435850668|ref|YP_007312254.1| transcription factor S, archaeal [Methanomethylovorans hollandica
DSM 15978]
gi|433661298|gb|AGB48724.1| transcription factor S, archaeal [Methanomethylovorans hollandica
DSM 15978]
Length = 104
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ + TT +CP+C H AY+ Q RSADE T F+KC KC WRE
Sbjct: 56 QGLPTTSTRCPECGHNVAYWWLRQLRSADESETRFFKC--TKCSATWRE 102
>gi|62858793|ref|NP_001016290.1| transcription elongation factor A (SII), 3 [Xenopus (Silurana)
tropicalis]
gi|89266837|emb|CAJ83973.1| transcription elongation factor A (SII), 2 [Xenopus (Silurana)
tropicalis]
Length = 292
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+Q RSADEPMTTF C +CG RW+
Sbjct: 254 CGKCKKKNCTYTQVQIRSADEPMTTFVACN--ECGNRWK 290
>gi|313223|emb|CAA51940.1| transcription elongation factor [Homo sapiens]
Length = 301
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEP+TTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPVTTFVVCN--ECGNRWK 299
>gi|448611813|ref|ZP_21662243.1| DNA-directed RNA polymerase subunit M2 [Haloferax mucosum ATCC
BAA-1512]
gi|445742574|gb|ELZ94068.1| DNA-directed RNA polymerase subunit M2 [Haloferax mucosum ATCC
BAA-1512]
Length = 109
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C +C H A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDECGHTEAWYTIKQTASADEPPTRFFKC--KECGYRWRE 107
>gi|224087871|ref|XP_002308256.1| predicted protein [Populus trichocarpa]
gi|222854232|gb|EEE91779.1| predicted protein [Populus trichocarpa]
Length = 352
Score = 44.7 bits (104), Expect = 0.008, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC +C + + Q+QTRSADEPMTT+ C N C W+
Sbjct: 309 TDQFKCGRCRQRKCTYYQMQTRSADEPMTTYVTCVN--CNNHWK 350
>gi|116789178|gb|ABK25146.1| unknown [Picea sitchensis]
Length = 331
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + KC KC + Q+QTRSADEPMTTF C N C W+
Sbjct: 288 TDQFKCGKCGQRMCTYYQLQTRSADEPMTTFVTCVN--CNNHWK 329
>gi|126302941|ref|XP_001375502.1| PREDICTED: transcription elongation factor A protein 2-like
[Monodelphis domestica]
Length = 359
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 299
>gi|213624443|gb|AAI71109.1| transcription elongation factor A (SII), 3 [Xenopus (Silurana)
tropicalis]
gi|213627306|gb|AAI71083.1| transcription elongation factor A (SII), 3 [Xenopus (Silurana)
tropicalis]
Length = 292
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+Q RSADEPMTTF C +CG RW+
Sbjct: 254 CGKCKKKNCTYTQVQIRSADEPMTTFVACN--ECGNRWK 290
>gi|9631693|ref|NP_048472.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
gi|1131468|gb|AAC96492.1| hypothetical protein [Paramecium bursaria Chlorella virus 1]
Length = 180
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + + ++QTRSADEPMT F KC + CG RW++
Sbjct: 142 QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHS--CGSRWKQ 180
>gi|452209985|ref|YP_007490099.1| Transcription factor S [Methanosarcina mazei Tuc01]
gi|452099887|gb|AGF96827.1| Transcription factor S [Methanosarcina mazei Tuc01]
Length = 95
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
+ KI E+ + G + + TT KCP+C + A + Q RSADE T F+KC
Sbjct: 29 SKAKIDDHEVVVLEGEQTS--GLPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKC-- 84
Query: 64 IKCGFRWRE 72
KCG+ WRE
Sbjct: 85 TKCGYTWRE 93
>gi|448927837|gb|AGE51409.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CviKI]
Length = 180
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + + ++QTRSADEPMT F KC + CG RW++
Sbjct: 142 QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHS--CGSRWKQ 180
>gi|21227500|ref|NP_633422.1| DNA-directed RNA polymerase subunit M [Methanosarcina mazei Go1]
gi|20905876|gb|AAM31094.1| DNA-directed RNA polymerase subunit M [Methanosarcina mazei Go1]
Length = 107
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
+ KI E+ + G + + TT KCP+C + A + Q RSADE T F+KC
Sbjct: 41 SKAKIDDHEVVVLEGEQTS--GLPTTNAKCPECGNNTAAWWLRQLRSADESETRFFKC-- 96
Query: 64 IKCGFRWRE 72
KCG+ WRE
Sbjct: 97 TKCGYTWRE 105
>gi|1085870|pir||S47663 transcription elongation factor TFIIS homolog - Chlorella virus
CV-K2
gi|565274|dbj|BAA04187.1| transcription elongation factor SII [Chlorella virus]
gi|448928857|gb|AGE52426.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus CvsA1]
gi|448931619|gb|AGE55180.1| transcription elongation factor S-II [Paramecium bursaria Chlorella
virus MA-1E]
Length = 180
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + + ++QTRSADEPMT F KC + CG RW++
Sbjct: 142 QCGKCKSRKTSYYEMQTRSADEPMTVFAKCHS--CGSRWKQ 180
>gi|331224793|ref|XP_003325068.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309304058|gb|EFP80649.1| hypothetical protein PGTG_06605 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 129
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
+E CPKC+HP+ + +Q RSADE T FY+C N
Sbjct: 87 DESCPKCQHPQMRYHTLQLRSADEGTTVFYECPN 120
>gi|320582848|gb|EFW97065.1| General transcription elongation factor TFIIS [Ogataea
parapolymorpha DL-1]
Length = 294
Score = 44.3 bits (103), Expect = 0.008, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRSADEP+TTF C + CG RW+
Sbjct: 256 CGKCNKREVSYYQMQTRSADEPLTTFCTCES--CGNRWK 292
>gi|19173009|ref|NP_597560.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19168676|emb|CAD26195.1| DNA-DIRECTED RNA POLYMERASE III 12.5kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449329727|gb|AGE95997.1| DNA-directed RNA polymerase III 12.5kDa subunit [Encephalitozoon
cuniculi]
Length = 104
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 3 CGRLKIKPKEIDHVMGGAAAWEN--VDTTEE-----KCPK---CEHPRAYFMQIQTRSAD 52
CG L +EI +G VD E KC K C F+++QTRSAD
Sbjct: 27 CGYLYAISEEISRTVGMTPKKSEGFVDEDESLKFVTKCGKRCECGSEEVSFVELQTRSAD 86
Query: 53 EPMTTFYKCCNIKCGFRWRE 72
EPMT FYKC I+C W+E
Sbjct: 87 EPMTIFYKC--IRCKKVWKE 104
>gi|444728032|gb|ELW68496.1| Zinc finger protein 436 [Tupaia chinensis]
Length = 763
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 236 QCSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 273
>gi|208968915|dbj|BAG74296.1| Transcription elongation factor A protein 1 [synthetic construct]
Length = 284
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEP+TTF C +CG RW+
Sbjct: 246 CGKCKKKNCTYTQVQTRSADEPVTTFVVCN--ECGNRWK 282
>gi|342878267|gb|EGU79622.1| hypothetical protein FOXB_09905 [Fusarium oxysporum Fo5176]
Length = 315
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C +C+ + + Q QTR+ADEPMTTF +C + CG RW+
Sbjct: 269 CGRCKKKQVSYTQAQTRAADEPMTTFCEC--MACGHRWK 305
>gi|348554119|ref|XP_003462873.1| PREDICTED: transcription elongation factor A protein 2-like [Cavia
porcellus]
Length = 325
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 262 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 298
>gi|448606130|ref|ZP_21658709.1| DNA-directed RNA polymerase subunit M2 [Haloferax sulfurifontis
ATCC BAA-897]
gi|445739547|gb|ELZ91054.1| DNA-directed RNA polymerase subunit M2 [Haloferax sulfurifontis
ATCC BAA-897]
Length = 109
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
C C H A++ QT SADEP T F+KC +CG+RWRE
Sbjct: 70 CDDCGHTEAWYTIKQTGSADEPPTRFFKC--QECGYRWRE 107
>gi|351725163|ref|NP_001235803.1| uncharacterized protein LOC100305979 [Glycine max]
gi|255627167|gb|ACU13928.1| unknown [Glycine max]
Length = 114
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C +C H A F Q R +E MT F+ CCN CG RWR+
Sbjct: 71 TKSVRCSQCNHGEAVFFQATAR-GEEGMTLFFVCCNPNCGHRWRD 114
>gi|45686032|ref|YP_003795.1| transcription elongation factor-SII [Ambystoma tigrinum virus]
gi|388260096|ref|YP_006347624.1| transcription elongation factor-SII [European catfish virus]
gi|37722456|gb|AAP33201.1| transcription elongation factor-SII [Ambystoma tigrinum stebbensi
virus]
gi|387119455|gb|AFJ52316.1| transcription elongation factor-SII [European catfish virus]
Length = 92
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
V+ KCP C R + +Q QTRSADEPMT F C +CG RW
Sbjct: 48 VEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCS--ECGKRW 90
>gi|18414627|ref|NP_567490.1| RNA polymerases M/15 Kd subunit [Arabidopsis thaliana]
gi|297800522|ref|XP_002868145.1| hypothetical protein ARALYDRAFT_493259 [Arabidopsis lyrata subsp.
lyrata]
gi|21537166|gb|AAM61507.1| RNA Polymerase II subunit 14.5 kD, putative [Arabidopsis thaliana]
gi|114050701|gb|ABI49500.1| At4g16265 [Arabidopsis thaliana]
gi|297313981|gb|EFH44404.1| hypothetical protein ARALYDRAFT_493259 [Arabidopsis lyrata subsp.
lyrata]
gi|332658323|gb|AEE83723.1| RNA polymerases M/15 Kd subunit [Arabidopsis thaliana]
Length = 114
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+H A F Q R +E MT F+ CCN C RWRE
Sbjct: 75 RCAKCQHGEAVFFQATAR-GEEGMTLFFVCCNPNCSHRWRE 114
>gi|431891278|gb|ELK02155.1| Zinc finger protein 436 [Pteropus alecto]
Length = 622
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 78 QCSKCKKKNCTYNQVQTRSADEPMTTFVLC--NECGNRWK 115
>gi|354500641|ref|XP_003512407.1| PREDICTED: transcription elongation factor A protein 2-like
[Cricetulus griseus]
Length = 299
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 261 CSKCKKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297
>gi|194307576|gb|ACF42306.1| transcription elongation factor [Soft-shelled turtle iridovirus]
gi|383215255|gb|AFG73130.1| transcription elongation factor sii [Rana grylio iridovirus]
Length = 92
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
V+ KCP C R + +Q QTRSADEPMT F C +CG RW
Sbjct: 48 VEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCS--ECGKRW 90
>gi|134045195|ref|YP_001096681.1| DNA-directed RNA polymerase subunit M [Methanococcus maripaludis
C5]
gi|132662820|gb|ABO34466.1| DNA-directed RNA polymerase, subunit M [Methanococcus maripaludis
C5]
Length = 105
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 31/52 (59%), Gaps = 5/52 (9%)
Query: 24 ENVDT---TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
ENVDT T +CP C + A++ QTR ADEP T FYKC KC WRE
Sbjct: 54 ENVDTLPTTRIECPACGNMEAFWWLQQTRCADEPETRFYKC--KKCSHTWRE 103
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.324 0.136 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,201,718,977
Number of Sequences: 23463169
Number of extensions: 35008288
Number of successful extensions: 94778
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1698
Number of HSP's successfully gapped in prelim test: 117
Number of HSP's that attempted gapping in prelim test: 92781
Number of HSP's gapped (non-prelim): 1831
length of query: 72
length of database: 8,064,228,071
effective HSP length: 44
effective length of query: 28
effective length of database: 7,031,848,635
effective search space: 196891761780
effective search space used: 196891761780
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 69 (31.2 bits)