BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8689
(72 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9Y2Y1|RPC10_HUMAN DNA-directed RNA polymerase III subunit RPC10 OS=Homo sapiens
GN=POLR3K PE=1 SV=2
Length = 108
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>sp|Q9CQZ7|RPC10_MOUSE DNA-directed RNA polymerase III subunit RPC10 OS=Mus musculus
GN=Polr3k PE=2 SV=1
Length = 108
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>sp|Q2M2S7|RPC10_BOVIN DNA-directed RNA polymerase III subunit RPC10 OS=Bos taurus
GN=POLR3K PE=3 SV=1
Length = 108
Score = 112 bits (280), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D +GGAAAWENVD+T E CPKCEHPRAYFMQ+QTR ADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>sp|Q04307|RPC10_YEAST DNA-directed RNA polymerase III subunit RPC10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPC11 PE=1
SV=1
Length = 110
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 48/71 (67%), Gaps = 7/71 (9%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGHRWKE 109
>sp|O13896|RPC10_SCHPO DNA-directed RNA polymerase III subunit RPC10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpc11 PE=3 SV=1
Length = 109
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 4/71 (5%)
Query: 4 GRLKIKPKEIDHVMGGAAAWENVDTTEEKC--PKCEHPRAYFMQIQTRSADEPMTTFYKC 61
R + KE+D V+GG A+E+ TE C KC++ RAYF Q+Q RSADEPM+TFY+C
Sbjct: 40 SRHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRC 99
Query: 62 CNIKCGFRWRE 72
KC F+WRE
Sbjct: 100 --TKCKFQWRE 108
>sp|Q54YG9|TCEA1_DICDI Transcription elongation factor A protein 1 OS=Dictyostelium
discoideum GN=tcea1 PE=3 SV=1
Length = 319
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/44 (54%), Positives = 30/44 (68%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T + +C KC+ + + Q+QTRSADEP TTF KCC CG RWR
Sbjct: 274 TDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCCVKGCGNRWR 317
>sp|Q58548|RPOM_METJA DNA-directed RNA polymerase subunit M OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=rpoM PE=3 SV=1
Length = 108
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/53 (52%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ E + TT +CPKC H AY+ QTR ADEP T FYKC KCG WRE
Sbjct: 56 SEGLETLPTTRIECPKCGHNEAYWWLQQTRCADEPETRFYKC--KKCGHTWRE 106
>sp|Q07271|RPOM_SULAC DNA-directed RNA polymerase subunit M OS=Sulfolobus acidocaldarius
(strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 /
NCIMB 11770) GN=rpoM PE=3 SV=2
Length = 111
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
CP C + AYF +QTRSADEP T FYKC KCG WRE
Sbjct: 72 CPSCGNDEAYFWILQTRSADEPATRFYKC--TKCGKVWRE 109
>sp|P36958|RPB9_DROME DNA-directed RNA polymerase II subunit RPB9 OS=Drosophila
melanogaster GN=RpII15 PE=2 SV=2
Length = 129
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>sp|Q56254|RPOM_THECE DNA-directed RNA polymerase subunit M OS=Thermococcus celer GN=rpoM
PE=1 SV=1
Length = 110
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
+ ++K K + ++ + + TT+ CPKC + AY+ ++QTR+ DEP T FYKC
Sbjct: 43 KQEVKHKPDEGIVVIEQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKC--T 100
Query: 65 KCGFRWR 71
KCG WR
Sbjct: 101 KCGHTWR 107
>sp|P49373|TFS2_SCHPO Transcription elongation factor S-II OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=tfs1 PE=3 SV=1
Length = 293
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEPMTTF +C CG RW+
Sbjct: 255 CGKCKQKKVSYYQMQTRSADEPMTTFCEC--TVCGNRWK 291
>sp|P20232|TFS2_DROME Transcription elongation factor S-II OS=Drosophila melanogaster
GN=TfIIS PE=2 SV=1
Length = 313
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C
Sbjct: 247 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMCN-- 304
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 305 ECGNRWK 311
>sp|Q29RL9|TCEA1_BOVIN Transcription elongation factor A protein 1 OS=Bos taurus GN=TCEA1
PE=2 SV=1
Length = 301
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>sp|Q4KLL0|TCEA1_RAT Transcription elongation factor A protein 1 OS=Rattus norvegicus
GN=Tcea1 PE=2 SV=1
Length = 301
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>sp|P07273|TFS2_YEAST Transcription elongation factor S-II OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DST1 PE=1 SV=4
Length = 309
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 23/52 (44%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
A E T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSVTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>sp|P23193|TCEA1_HUMAN Transcription elongation factor A protein 1 OS=Homo sapiens
GN=TCEA1 PE=1 SV=2
Length = 301
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>sp|Q2KI09|TCEA3_BOVIN Transcription elongation factor A protein 3 OS=Bos taurus GN=TCEA3
PE=2 SV=1
Length = 349
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 310 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 347
>sp|P10711|TCEA1_MOUSE Transcription elongation factor A protein 1 OS=Mus musculus
GN=Tcea1 PE=1 SV=2
Length = 301
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFVVCN--ECGNRWK 299
>sp|P23881|TCEA3_MOUSE Transcription elongation factor A protein 3 OS=Mus musculus
GN=Tcea3 PE=1 SV=3
Length = 347
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 345
>sp|O75764|TCEA3_HUMAN Transcription elongation factor A protein 3 OS=Homo sapiens
GN=TCEA3 PE=2 SV=2
Length = 348
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF C +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFVLCN--ECGNRWK 346
>sp|P52652|TFS2_CAEEL Putative transcription elongation factor S-II OS=Caenorhabditis
elegans GN=T24H10.1 PE=3 SV=1
Length = 308
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 2/40 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 306
>sp|Q6GZP4|081R_FRG3G Putative transcription elongation factor S-II-like protein 81R
OS=Frog virus 3 (isolate Goorha) GN=FV3-081R PE=4 SV=1
Length = 92
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
V+ KCP C R + +Q QTRSADEPMT F C +CG RW
Sbjct: 48 VEEGTVKCPGCGSRRVHALQRQTRSADEPMTLFAMCS--ECGKRW 90
>sp|Q5UQS8|TFS2_MIMIV Transcription factor S-II-related protein OS=Acanthamoeba polyphaga
mimivirus GN=MIMI_R339 PE=3 SV=1
Length = 173
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
C C++ +F Q+QTRSADEPMTTFY C N
Sbjct: 134 CYACKNTSYHFYQLQTRSADEPMTTFYICKN 164
>sp|Q148K0|TCEA2_BOVIN Transcription elongation factor A protein 2 OS=Bos taurus GN=TCEA2
PE=2 SV=1
Length = 300
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF CN +CG RW+
Sbjct: 262 CGKCRKKNCTYTQVQTRSSDEPMTTFV-VCN-ECGNRWK 298
>sp|Q15560|TCEA2_HUMAN Transcription elongation factor A protein 2 OS=Homo sapiens
GN=TCEA2 PE=1 SV=1
Length = 299
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF C +CG RW+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFVVCN--ECGNRWK 297
>sp|Q63799|TCEA2_RAT Transcription elongation factor A protein 2 OS=Rattus norvegicus
GN=Tcea2 PE=2 SV=1
Length = 299
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297
>sp|P32529|RPA12_YEAST DNA-directed RNA polymerase I subunit RPA12 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=RPA12 PE=1
SV=1
Length = 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCP+C + + +Q RSADE T FY C CG+++R
Sbjct: 81 TIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTC--TSCGYKFR 122
>sp|Q9QVN7|TCEA2_MOUSE Transcription elongation factor A protein 2 OS=Mus musculus
GN=Tcea2 PE=2 SV=2
Length = 299
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297
>sp|O94703|RPA12_SCHPO DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpa12 PE=3 SV=1
Length = 119
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E T EEKCPKC + F +Q RSADE T FY+C +C +++
Sbjct: 71 EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYEC--PRCAYKFS 116
>sp|O29033|RPOM_ARCFU DNA-directed RNA polymerase subunit M OS=Archaeoglobus fulgidus
(strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC
100126) GN=rpoM PE=3 SV=1
Length = 103
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TT+ CP C H A++ Q R+ADE F++C KCG WRE
Sbjct: 59 TTKAICPACGHNEAFWWLRQLRAADESEVRFFRC--TKCGKTWRE 101
>sp|Q32P73|RPB9_BOVIN DNA-directed RNA polymerase II subunit RPB9 OS=Bos taurus GN=POLR2I
PE=2 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|O27369|RPOM_METTH DNA-directed RNA polymerase subunit M OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpoM PE=3 SV=2
Length = 104
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 25 NVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ TT +CPKC + A++ QTR ADE T F++C +C WRE
Sbjct: 57 TLPTTRVECPKCGNMEAFWWLQQTRRADESETRFFRC--TRCKHTWRE 102
>sp|P60899|RPB9_PIG DNA-directed RNA polymerase II subunit RPB9 OS=Sus scrofa GN=POLR2I
PE=3 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|P60898|RPB9_MOUSE DNA-directed RNA polymerase II subunit RPB9 OS=Mus musculus
GN=Polr2i PE=2 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|P36954|RPB9_HUMAN DNA-directed RNA polymerase II subunit RPB9 OS=Homo sapiens
GN=POLR2I PE=1 SV=1
Length = 125
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>sp|O74635|RPB9_SCHPO DNA-directed RNA polymerase II subunit RPB9 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=rpb9 PE=1 SV=1
Length = 113
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 16 VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
V A+ + ++++CP+C A F Q +R D MT Y C + CGF + E
Sbjct: 58 VSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVC--VHCGFAFEE 112
>sp|Q791N7|RPA12_MOUSE DNA-directed RNA polymerase I subunit RPA12 OS=Mus musculus
GN=Znrd1 PE=2 SV=1
Length = 123
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C I C F+ +E
Sbjct: 79 VIDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTC--INCKFQEKE 121
>sp|Q1XHV8|RPA12_PANTR DNA-directed RNA polymerase I subunit RPA12 OS=Pan troglodytes
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C N C F+ +E
Sbjct: 82 VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 124
>sp|Q9P1U0|RPA12_HUMAN DNA-directed RNA polymerase I subunit RPA12 OS=Homo sapiens
GN=ZNRD1 PE=1 SV=1
Length = 126
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C N C F+ +E
Sbjct: 82 VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 124
>sp|Q5TM50|RPA12_MACMU DNA-directed RNA polymerase I subunit RPA12 OS=Macaca mulatta
GN=ZNRD1 PE=3 SV=1
Length = 126
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C N C F+ +E
Sbjct: 82 VVDRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 124
>sp|Q197A5|VF349_IIV3 Putative transcription elongation factor S-II-like protein 055R
OS=Invertebrate iridescent virus 3 GN=IIV3-055R PE=3
SV=1
Length = 137
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+C KC+ + + QTRS DEP T F C N C RW E
Sbjct: 99 RCGKCDCTKILWFSKQTRSMDEPTTIFASCSN--CKTRWTE 137
>sp|Q6MFY5|RPA12_RAT DNA-directed RNA polymerase I subunit RPA12 OS=Rattus norvegicus
GN=Znrd1 PE=3 SV=1
Length = 123
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +C +C H + Q RSADE T FY C I C F+ +E
Sbjct: 79 VVDRRCSRCGHEGMAYYTRQMRSADEGQTVFYTC--INCKFQEKE 121
>sp|Q1RMP0|RPA12_BOVIN DNA-directed RNA polymerase I subunit RPA12 OS=Bos taurus GN=ZNRD1
PE=2 SV=1
Length = 123
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +C +C H + Q RSADE T FY C N C F+ +E
Sbjct: 79 VVDRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 121
>sp|P33796|RP30_VAR67 DNA-directed RNA polymerase 30 kDa polypeptide OS=Variola virus
(isolate Human/India/Ind3/1967) GN=RPO30 PE=3 SV=1
Length = 259
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
CP C+ M IQTR+ADEP + C + K F+
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>sp|P21603|RP30_VACCW DNA-directed RNA polymerase 30 kDa polypeptide OS=Vaccinia virus
(strain Western Reserve) GN=RPO30 PE=3 SV=1
Length = 259
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
CP C+ M IQTR+ADEP + C + K F+
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>sp|P21082|RP30_VACCC DNA-directed RNA polymerase 30 kDa polypeptide OS=Vaccinia virus
(strain Copenhagen) GN=RPO30 PE=3 SV=1
Length = 259
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
CP C+ M IQTR+ADEP + C + K F+
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>sp|O57187|RPO5_VACCA DNA-directed RNA polymerase 30 kDa polypeptide OS=Vaccinia virus
(strain Ankara) GN=RPO30 PE=4 SV=1
Length = 259
Score = 33.1 bits (74), Expect = 0.53, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
CP C+ M IQTR+ADEP + C + K F+
Sbjct: 159 CPNCKSRNTTPMMIQTRAADEPPLVRHACRDCKQHFK 195
>sp|P0C8F7|TFS2_ASFP4 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996)
GN=Pret-152 PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KCP C+ + ++QTR+ DEP T F C KCG +
Sbjct: 205 KCPNCKQRMCTYREVQTRALDEPSTIFCTC--KKCGHEF 241
>sp|P27948|TFS2_ASFB7 Transcription factor S-II-related protein OS=African swine fever
virus (strain Badajoz 1971 Vero-adapted) GN=BA71V-140
PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KCP C+ + ++QTR+ DEP T F C KCG +
Sbjct: 205 KCPNCKQRMCTYREVQTRALDEPSTIFCTC--KKCGHEF 241
>sp|P0C8F6|TFS2_ASFM2 Transcription factor S-II-related protein OS=African swine fever
virus (isolate Tick/Malawi/Lil 20-1/1983) GN=Mal-147
PE=2 SV=1
Length = 243
Score = 32.3 bits (72), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KCP C+ + ++QTR+ DEP T F C KCG +
Sbjct: 205 KCPNCKQRMCTYREVQTRALDEPSTIF--CTCKKCGHEF 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.136 0.473
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,543,165
Number of Sequences: 539616
Number of extensions: 849689
Number of successful extensions: 2767
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2705
Number of HSP's gapped (non-prelim): 58
length of query: 72
length of database: 191,569,459
effective HSP length: 44
effective length of query: 28
effective length of database: 167,826,355
effective search space: 4699137940
effective search space used: 4699137940
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)