Query psy8689
Match_columns 72
No_of_seqs 114 out of 637
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 16:43:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8689.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8689hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h0g_I DNA-directed RNA polyme 99.9 3.3E-28 1.1E-32 153.5 5.9 62 9-72 51-112 (113)
2 1twf_I B12.6, DNA-directed RNA 99.9 5.4E-27 1.8E-31 149.6 6.7 62 9-72 51-112 (122)
3 1qyp_A RNA polymerase II; tran 99.9 2.2E-25 7.6E-30 125.7 5.9 51 20-72 5-55 (57)
4 1tfi_A Transcriptional elongat 99.9 6.5E-25 2.2E-29 122.0 5.2 42 28-71 7-48 (50)
5 3qt1_I DNA-directed RNA polyme 99.9 3.1E-25 1.1E-29 143.8 0.3 57 14-72 76-132 (133)
6 3po3_S Transcription elongatio 99.8 9.4E-21 3.2E-25 127.3 2.9 48 22-71 126-176 (178)
7 1pqv_S STP-alpha, transcriptio 99.7 8E-19 2.7E-23 125.6 4.8 43 27-71 265-307 (309)
8 1k81_A EIF-2-beta, probable tr 94.7 0.062 2.1E-06 27.0 4.0 31 31-70 1-31 (36)
9 2akl_A PHNA-like protein PA012 91.8 0.079 2.7E-06 34.2 1.9 28 31-71 28-55 (138)
10 1qxf_A GR2, 30S ribosomal prot 90.7 0.14 4.7E-06 29.3 2.0 30 29-69 6-35 (66)
11 2fiy_A Protein FDHE homolog; F 90.2 0.35 1.2E-05 34.4 4.2 38 30-71 182-219 (309)
12 3j20_W 30S ribosomal protein S 89.4 0.2 7E-06 28.3 2.0 30 29-69 14-43 (63)
13 1pft_A TFIIB, PFTFIIBN; N-term 87.6 0.55 1.9E-05 24.4 2.9 31 30-71 5-35 (50)
14 1wii_A Hypothetical UPF0222 pr 87.3 1.3 4.6E-05 26.1 4.7 35 30-70 23-57 (85)
15 2xzm_6 RPS27E; ribosome, trans 86.5 0.32 1.1E-05 28.7 1.7 30 29-69 31-60 (81)
16 3u5c_b RP61, YS20, 40S ribosom 84.5 0.36 1.2E-05 28.6 1.2 29 29-68 33-61 (82)
17 2fiy_A Protein FDHE homolog; F 81.2 1.6 5.5E-05 30.9 3.8 40 30-71 222-264 (309)
18 3j20_Y 30S ribosomal protein S 79.8 2.6 9E-05 22.2 3.5 32 27-70 16-47 (50)
19 4ayb_P DNA-directed RNA polyme 78.6 1.3 4.3E-05 23.8 1.9 12 30-41 23-34 (48)
20 1vq8_Z 50S ribosomal protein L 77.4 2.1 7.2E-05 25.0 2.9 30 30-71 27-56 (83)
21 3iz6_X 40S ribosomal protein S 77.2 0.58 2E-05 27.9 0.4 30 29-69 35-64 (86)
22 2g2k_A EIF-5, eukaryotic trans 74.2 3.2 0.00011 27.3 3.4 32 31-69 97-128 (170)
23 2e9h_A EIF-5, eukaryotic trans 71.9 4.4 0.00015 26.3 3.6 32 31-69 104-135 (157)
24 1dl6_A Transcription factor II 71.7 2.4 8.3E-05 22.9 2.0 30 31-71 12-41 (58)
25 2k4x_A 30S ribosomal protein S 70.6 4.4 0.00015 21.8 2.9 33 26-70 14-46 (55)
26 3cw2_K Translation initiation 70.3 0.83 2.8E-05 29.1 -0.2 30 31-69 104-133 (139)
27 2con_A RUH-035 protein, NIN on 70.2 1.7 6E-05 25.3 1.2 15 27-41 27-41 (79)
28 4esj_A Type-2 restriction enzy 69.9 2.4 8.1E-05 29.7 2.1 33 30-70 34-66 (257)
29 1nui_A DNA primase/helicase; z 67.1 4.7 0.00016 26.8 3.1 29 30-69 14-42 (255)
30 2d74_B Translation initiation 64.9 1.8 6E-05 27.9 0.6 31 31-70 105-135 (148)
31 3h0g_L DNA-directed RNA polyme 62.4 3.2 0.00011 23.2 1.3 13 29-41 37-49 (63)
32 3ga8_A HTH-type transcriptiona 60.8 8.4 0.00029 21.4 2.9 38 31-70 3-46 (78)
33 2qkd_A Zinc finger protein ZPR 60.2 11 0.00038 27.7 4.2 40 29-71 219-260 (404)
34 3o9x_A Uncharacterized HTH-typ 58.3 13 0.00044 21.9 3.6 39 31-71 3-47 (133)
35 1nee_A EIF-2-beta, probable tr 56.2 1.8 6.1E-05 27.5 -0.6 30 31-69 103-132 (138)
36 1twf_L ABC10-alpha, DNA-direct 55.4 4 0.00014 23.1 0.9 9 31-39 46-54 (70)
37 2kdx_A HYPA, hydrogenase/ureas 54.7 6.2 0.00021 23.7 1.8 15 30-44 89-104 (119)
38 3a43_A HYPD, hydrogenase nicke 52.1 8.1 0.00028 24.0 2.0 14 30-43 107-120 (139)
39 6rxn_A Rubredoxin; electron tr 52.1 4.3 0.00015 21.2 0.6 14 31-44 31-44 (46)
40 1ffk_W Ribosomal protein L37AE 49.6 23 0.0008 20.1 3.6 30 29-70 26-55 (73)
41 2gai_A DNA topoisomerase I; zi 48.7 2.9 9.8E-05 32.1 -0.6 32 32-69 574-606 (633)
42 2jox_A Churchill protein; zinc 48.3 21 0.00071 21.8 3.3 37 31-69 27-66 (106)
43 1dxg_A Desulforedoxin; non-hem 46.5 8.6 0.00029 18.7 1.2 11 57-69 5-15 (36)
44 3cc2_Z 50S ribosomal protein L 44.3 16 0.00055 22.6 2.5 31 29-71 59-89 (116)
45 2kvh_A Zinc finger and BTB dom 43.8 12 0.00042 15.0 1.4 11 59-71 4-14 (27)
46 1yk4_A Rubredoxin, RD; electro 42.9 7.9 0.00027 20.5 0.8 16 30-45 35-50 (52)
47 2jrp_A Putative cytoplasmic pr 42.8 25 0.00086 20.4 3.0 9 31-39 3-11 (81)
48 2v3b_B Rubredoxin 2, rubredoxi 41.8 7.7 0.00026 20.8 0.6 17 30-46 36-52 (55)
49 3iz5_m 60S ribosomal protein L 41.2 29 0.001 20.6 3.2 31 29-71 35-65 (92)
50 3j21_i 50S ribosomal protein L 40.7 21 0.00073 20.8 2.5 31 29-71 34-64 (83)
51 1qf8_A Casein kinase II; casei 40.2 22 0.00074 23.5 2.7 20 19-38 123-142 (182)
52 3k1f_M Transcription initiatio 40.2 30 0.001 23.3 3.4 30 31-71 22-53 (197)
53 2kvf_A Zinc finger and BTB dom 39.5 15 0.00053 14.6 1.4 11 59-71 4-14 (28)
54 2ab3_A ZNF29; zinc finger prot 38.7 17 0.00057 14.5 1.4 13 59-71 3-15 (29)
55 2kvg_A Zinc finger and BTB dom 38.4 16 0.00054 14.8 1.3 11 59-71 4-14 (27)
56 4bbr_M Transcription initiatio 38.2 35 0.0012 24.0 3.8 28 31-69 22-51 (345)
57 2e2z_A TIM15; protein import, 37.6 11 0.00039 22.8 1.0 35 30-69 13-47 (100)
58 1e8j_A Rubredoxin; iron-sulfur 37.0 7.5 0.00026 20.6 0.1 15 30-44 36-50 (52)
59 4rxn_A Rubredoxin; electron tr 36.2 11 0.00036 20.3 0.6 16 30-45 36-51 (54)
60 2m0d_A Zinc finger and BTB dom 36.0 18 0.00062 14.4 1.3 11 59-71 4-14 (30)
61 2i5o_A DNA polymerase ETA; zin 35.5 20 0.00068 18.0 1.6 11 29-39 8-18 (39)
62 3izc_m 60S ribosomal protein R 35.5 38 0.0013 20.1 3.1 31 29-71 35-65 (92)
63 1zfo_A LAsp-1; LIM domain, zin 35.2 14 0.0005 17.1 1.0 10 30-39 3-12 (31)
64 1dx8_A Rubredoxin; electron tr 35.0 11 0.00038 21.1 0.6 17 30-46 40-56 (70)
65 3cng_A Nudix hydrolase; struct 34.2 31 0.0011 21.3 2.7 11 31-41 4-14 (189)
66 1rik_A E6APC1 peptide; E6-bind 33.7 24 0.00083 14.0 1.6 10 59-70 3-12 (29)
67 3mhs_C SAGA-associated factor 33.2 27 0.00094 21.0 2.2 24 15-40 57-80 (99)
68 2kn9_A Rubredoxin; metalloprot 33.0 14 0.00047 21.5 0.8 17 30-46 60-76 (81)
69 2m0f_A Zinc finger and BTB dom 31.5 24 0.00083 13.9 1.4 11 59-71 3-13 (29)
70 1x0t_A Ribonuclease P protein 30.7 15 0.00052 22.3 0.7 32 31-69 66-103 (120)
71 2elq_A Zinc finger protein 406 30.4 26 0.00089 15.0 1.4 11 59-71 10-20 (36)
72 2lvu_A Zinc finger and BTB dom 36.3 11 0.00037 15.0 0.0 10 59-70 3-12 (26)
73 1srk_A Zinc finger protein ZFP 30.1 26 0.00089 14.8 1.4 11 59-71 8-18 (35)
74 2elm_A Zinc finger protein 406 29.8 28 0.00097 15.2 1.5 11 59-71 10-20 (37)
75 2ct7_A Ring finger protein 31; 29.8 27 0.00093 19.6 1.7 7 32-38 27-33 (86)
76 2elx_A Zinc finger protein 406 29.2 28 0.00095 14.6 1.4 11 59-71 8-18 (35)
77 1s24_A Rubredoxin 2; electron 28.3 17 0.00058 21.4 0.6 17 30-46 68-84 (87)
78 2elv_A Zinc finger protein 406 28.2 29 0.001 14.8 1.4 11 59-71 10-20 (36)
79 4a17_Y RPL37A, 60S ribosomal p 28.1 43 0.0015 20.3 2.4 31 29-71 35-65 (103)
80 1l8d_A DNA double-strand break 27.9 20 0.00069 20.8 0.9 10 30-39 47-56 (112)
81 2elp_A Zinc finger protein 406 27.7 31 0.001 14.8 1.4 11 59-71 10-20 (37)
82 1znf_A 31ST zinc finger from X 26.9 14 0.00048 14.6 0.1 10 59-70 2-11 (27)
83 2k3r_A Ribonuclease P protein 26.7 1.1E+02 0.0038 18.5 4.4 32 31-69 61-98 (123)
84 4e2x_A TCAB9; kijanose, tetron 26.5 1.1E+02 0.0036 21.0 4.6 39 30-71 12-64 (416)
85 2e72_A POGO transposable eleme 26.4 33 0.0011 18.2 1.5 11 29-39 11-21 (49)
86 2hgo_A CASSIICOLIN; toxin, dis 26.2 24 0.00082 16.3 0.8 6 66-71 18-23 (27)
87 3r8s_0 50S ribosomal protein L 26.0 48 0.0016 17.6 2.2 9 30-38 27-35 (56)
88 2jne_A Hypothetical protein YF 26.0 77 0.0026 19.1 3.3 11 29-39 31-41 (101)
89 2elt_A Zinc finger protein 406 26.0 35 0.0012 14.4 1.4 11 59-71 10-20 (36)
90 3lrr_A Probable ATP-dependent 25.0 31 0.0011 21.3 1.5 16 55-70 56-71 (121)
91 2x5c_A Hypothetical protein OR 24.7 41 0.0014 20.5 1.9 16 29-44 51-66 (131)
92 2els_A Zinc finger protein 406 24.6 36 0.0012 14.5 1.3 10 59-70 10-19 (36)
93 1yuz_A Nigerythrin; rubrythrin 24.6 17 0.00058 23.9 0.2 14 31-44 187-200 (202)
94 4dgl_A Casein kinase II subuni 24.6 45 0.0015 22.6 2.3 15 24-38 128-142 (215)
95 1va1_A Transcription factor SP 24.5 43 0.0015 14.5 1.6 13 59-71 9-21 (37)
96 3iuf_A Zinc finger protein UBI 24.1 35 0.0012 16.1 1.3 11 59-71 8-18 (48)
97 2gmg_A Hypothetical protein PF 24.0 18 0.00063 22.0 0.2 10 59-70 68-77 (105)
98 2kpi_A Uncharacterized protein 23.7 51 0.0017 17.4 2.0 28 31-70 11-38 (56)
99 2epc_A Zinc finger protein 32; 22.7 42 0.0014 14.7 1.4 11 59-71 12-22 (42)
100 1ard_A Yeast transcription fac 22.7 18 0.00062 14.4 0.0 10 59-70 3-12 (29)
101 2xzf_A Formamidopyrimidine-DNA 21.9 67 0.0023 21.8 2.8 30 29-68 241-270 (271)
102 1njq_A Superman protein; zinc- 21.8 43 0.0015 14.6 1.3 11 59-71 7-17 (39)
103 2hf1_A Tetraacyldisaccharide-1 21.6 48 0.0016 18.3 1.7 28 31-70 9-36 (68)
104 2en2_A B-cell lymphoma 6 prote 21.5 44 0.0015 14.7 1.3 11 59-71 12-22 (42)
105 2js4_A UPF0434 protein BB2007; 21.4 46 0.0016 18.4 1.6 28 31-70 9-36 (70)
106 2czr_A TBP-interacting protein 21.2 55 0.0019 22.2 2.2 17 38-68 146-162 (226)
107 3v2d_5 50S ribosomal protein L 21.2 61 0.0021 17.5 2.0 9 30-38 30-38 (60)
108 2epv_A Zinc finger protein 268 21.1 47 0.0016 15.0 1.4 11 59-71 13-23 (44)
109 1fv5_A First zinc finger of U- 20.9 30 0.001 16.3 0.6 11 59-71 9-19 (36)
110 2vut_I AREA, nitrogen regulato 20.9 9.2 0.00032 19.6 -1.4 31 32-71 3-33 (43)
111 2el5_A Zinc finger protein 268 20.8 48 0.0017 14.6 1.4 11 59-71 11-21 (42)
112 2jr6_A UPF0434 protein NMA0874 20.6 52 0.0018 18.1 1.7 28 31-70 9-36 (68)
113 2emj_A Zinc finger protein 28 20.2 51 0.0017 14.9 1.4 11 59-71 13-23 (46)
114 2eoy_A Zinc finger protein 473 20.1 50 0.0017 14.9 1.4 11 59-71 13-23 (46)
115 3j21_g 50S ribosomal protein L 20.1 50 0.0017 17.4 1.5 10 30-39 14-23 (51)
No 1
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=99.95 E-value=3.3e-28 Score=153.47 Aligned_cols=62 Identities=31% Similarity=0.628 Sum_probs=59.0
Q ss_pred CccccccccCCccccccCCcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceecC
Q psy8689 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72 (72)
Q Consensus 9 ~~ke~~~v~~~~~~~~~~~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~~ 72 (72)
..+|.++|++++++|+++|++.+.||+|||++|+|||+|+||||||||+||+|.+ |||+|++
T Consensus 51 ~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~--C~~~w~~ 112 (113)
T 3h0g_I 51 SNVENTTVSHDASTDPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVH--CGFAFEE 112 (113)
T ss_dssp CSCTTCTTCTTSTTCSSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESS--SCCCCCC
T ss_pred ccccccceeccccccccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCC--CCCEEec
Confidence 4478889999999999999999999999999999999999999999999999998 9999986
No 2
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=99.94 E-value=5.4e-27 Score=149.58 Aligned_cols=62 Identities=24% Similarity=0.514 Sum_probs=58.5
Q ss_pred CccccccccCCccccccCCcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceecC
Q psy8689 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72 (72)
Q Consensus 9 ~~ke~~~v~~~~~~~~~~~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~~ 72 (72)
..++.++|++++++|+++|++++.||+|||++|+|||+|+||||||||+||+|++ |||+|++
T Consensus 51 ~~~e~~~v~~~~~~~~t~p~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~--C~~~w~~ 112 (122)
T 1twf_I 51 NIGETAGVVQDIGSDPTLPRSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLS--CSHIFTS 112 (122)
T ss_dssp CTTSSTTCCTTGGGCTTSCCCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETT--TCCEEEC
T ss_pred cccccccccccccccccccccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCC--CCCEecc
Confidence 4577789999999999999999999999999999999999999999999999999 9999985
No 3
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=99.92 E-value=2.2e-25 Score=125.71 Aligned_cols=51 Identities=45% Similarity=0.980 Sum_probs=48.2
Q ss_pred ccccccCCcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceecC
Q psy8689 20 AAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72 (72)
Q Consensus 20 ~~~~~~~~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~~ 72 (72)
+++|+++|++.+.||+||+++++|+|+|+||||||||+||+|.+ |||+|++
T Consensus 5 e~~~~~~~~~~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~--Cg~~w~~ 55 (57)
T 1qyp_A 5 EQDLKTLPTTKITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTK--CGHTWRS 55 (57)
T ss_dssp CCCCSSSCEEECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESS--SCCEEEC
T ss_pred hhhhhcCCceEeECCCCCCCEEEEEEeecccCCCCCcEEEEcCC--CCCEecc
Confidence 45789999999999999999999999999999999999999999 9999985
No 4
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=99.91 E-value=6.5e-25 Score=121.95 Aligned_cols=42 Identities=52% Similarity=0.967 Sum_probs=39.8
Q ss_pred cceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 28 ~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
+..+.||+||+++|+|||+|+||||||||+||+|++ |||+|+
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~--Cg~~w~ 48 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNE--CGNRWK 48 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESS--SCCEEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCC--CCCeEE
Confidence 446899999999999999999999999999999999 999997
No 5
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.1e-25 Score=143.79 Aligned_cols=57 Identities=47% Similarity=0.958 Sum_probs=0.0
Q ss_pred ccccCCccccccCCcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceecC
Q psy8689 14 DHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72 (72)
Q Consensus 14 ~~v~~~~~~~~~~~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~~ 72 (72)
..|+.++..++++|++++.||+||+++|+|||+|+||||||||+||+|++ |||+|++
T Consensus 76 ~~vv~dv~~dptlp~t~~~CpkCg~~~a~f~q~Q~RsaDE~mT~fy~C~~--C~~~w~e 132 (133)
T 3qt1_I 76 AGVVQDIGSDPTLPRSDRECPKCHSRENVFFQLQIRSADEPMTTFYKCVN--CGHRWKE 132 (133)
T ss_dssp -----------------------------------------------------------
T ss_pred ceeEeeccccccCCcccCCCCCCCCceEEEEEEeeecCCCCCcEEEEcCC--CCCEeCc
Confidence 34556666789999999999999999999999999999999999999999 9999986
No 6
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=99.80 E-value=9.4e-21 Score=127.27 Aligned_cols=48 Identities=38% Similarity=0.808 Sum_probs=42.7
Q ss_pred ccccCCc---ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 22 AWENVDT---TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 22 ~~~~~~~---t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
.++++++ +.+.||+|||++++|||+|+||||||||+||+|++ |||+|+
T Consensus 126 ~~~~~~~~~t~~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~--C~~~w~ 176 (178)
T 3po3_S 126 QGATIERSVTDRFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEA--CGNRWK 176 (178)
T ss_dssp BCCCCCCCCBSSSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETT--TCCEEC
T ss_pred hhccccCCCcCCcCCCCCCCCceEEEEeecccCCCCCcEEEEcCC--CCCeec
Confidence 3455554 35899999999999999999999999999999999 999997
No 7
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=99.75 E-value=8e-19 Score=125.57 Aligned_cols=43 Identities=49% Similarity=0.950 Sum_probs=40.0
Q ss_pred CcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 27 ~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
+++.+.||+||+++++|||+|+||||||||+||.|++ |||+|+
T Consensus 265 ~~~~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~--Cg~~w~ 307 (309)
T 1pqv_S 265 VTDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEA--CGNRWK 307 (309)
T ss_pred CcccccCCCCCCCeeEEEEeecccCCCCCcEEEEeCC--CCCcee
Confidence 3345799999999999999999999999999999999 999997
No 8
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=94.68 E-value=0.062 Score=27.01 Aligned_cols=31 Identities=23% Similarity=0.548 Sum_probs=24.6
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
+.||.|++.+..+.-. .-.+|..|.. ||+++
T Consensus 1 VlC~~C~~peT~l~~~-------~~~~~l~C~a--CG~~~ 31 (36)
T 1k81_A 1 VICRECGKPDTKIIKE-------GRVHLLKCMA--CGAIR 31 (36)
T ss_dssp CCCSSSCSCEEEEEEE-------TTEEEEEEET--TTEEE
T ss_pred CCCcCCCCCCcEEEEe-------CCcEEEEhhc--CCCcc
Confidence 4699999999987552 2568888998 99876
No 9
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=91.80 E-value=0.079 Score=34.15 Aligned_cols=28 Identities=25% Similarity=0.787 Sum_probs=20.7
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
-.||+|++..+|.-. . -|+|-. |+|-|.
T Consensus 28 P~CP~C~seytYeDg--------~---l~vCPe--C~hEW~ 55 (138)
T 2akl_A 28 PPCPQCNSEYTYEDG--------A---LLVCPE--CAHEWS 55 (138)
T ss_dssp CCCTTTCCCCCEECS--------S---SEEETT--TTEEEC
T ss_pred CCCCCCCCcceEecC--------C---eEECCc--cccccC
Confidence 479999998886421 1 288955 999995
No 10
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=90.68 E-value=0.14 Score=29.29 Aligned_cols=30 Identities=40% Similarity=0.825 Sum_probs=23.5
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
++++||.|++...+|-..|+ -..|.. ||..
T Consensus 6 m~VKCp~C~niq~VFShA~t---------vV~C~~--Cg~~ 35 (66)
T 1qxf_A 6 VKVKCPDCEHEQVIFDHPST---------IVKCII--CGRT 35 (66)
T ss_dssp EEEECTTTCCEEEEESSCSS---------CEECSS--SCCE
T ss_pred EEEECCCCCCceEEEecCce---------EEEccc--CCCE
Confidence 47899999999999977653 256877 8764
No 11
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=90.17 E-value=0.35 Score=34.36 Aligned_cols=38 Identities=21% Similarity=0.602 Sum_probs=25.4
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
...||.||+.-..-.- ..+...++ ..|..|.- |++.|.
T Consensus 182 ~~~CPvCGs~P~~s~l-~~~g~~~G-~R~l~Cs~--C~t~W~ 219 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMI-RQGGKETG-LRYLSCSL--CACEWH 219 (309)
T ss_dssp CSSCTTTCCCEEEEEE-EC----CC-EEEEEETT--TCCEEE
T ss_pred CCCCCCCCCcCceeEE-eecCCCCC-cEEEEeCC--CCCEEe
Confidence 4689999998876533 22223344 35899988 999996
No 12
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=89.43 E-value=0.2 Score=28.32 Aligned_cols=30 Identities=27% Similarity=0.538 Sum_probs=23.3
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
++++||.|++...+|-..|+ -..|.. ||..
T Consensus 14 m~VkCp~C~~~q~VFSha~t---------~V~C~~--Cgt~ 43 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPAT---------KVRCLI--CGAT 43 (63)
T ss_dssp EEEECSSSCCEEEEESSCSS---------CEECSS--SCCE
T ss_pred EEEECCCCCCeeEEEecCCe---------EEEccC--cCCE
Confidence 57999999999999976553 256877 8764
No 13
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=87.60 E-value=0.55 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.629 Sum_probs=20.5
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
...||.||+...+|-. .+--++|.. ||..+.
T Consensus 5 ~~~CP~C~~~~l~~d~---------~~gelvC~~--CG~v~~ 35 (50)
T 1pft_A 5 QKVCPACESAELIYDP---------ERGEIVCAK--CGYVIE 35 (50)
T ss_dssp CCSCTTTSCCCEEEET---------TTTEEEESS--SCCBCC
T ss_pred cEeCcCCCCcceEEcC---------CCCeEECcc--cCCccc
Confidence 3579999986665521 111378988 998654
No 14
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=87.27 E-value=1.3 Score=26.05 Aligned_cols=35 Identities=23% Similarity=0.539 Sum_probs=26.1
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
.+.||.|||..++-..+- +. ..+-...|.. ||-.|
T Consensus 23 ~F~CPfCnh~~sV~vkid-k~---~~~g~l~C~~--Cg~~~ 57 (85)
T 1wii_A 23 QFTCPFCNHEKSCDVKMD-RA---RNTGVISCTV--CLEEF 57 (85)
T ss_dssp CCCCTTTCCSSCEEEEEE-TT---TTEEEEEESS--SCCEE
T ss_pred eEcCCCCCCCCeEEEEEE-cc---CCEEEEEccc--CCCeE
Confidence 489999999988776653 21 3466778999 99766
No 15
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=86.52 E-value=0.32 Score=28.74 Aligned_cols=30 Identities=23% Similarity=0.554 Sum_probs=23.5
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
++++||.|++...+|-..|+ ...|.. ||..
T Consensus 31 m~VkCp~C~n~q~VFShA~t---------~V~C~~--Cg~~ 60 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQS---------TIICEK--CSAI 60 (81)
T ss_dssp EEEECSSSCCEEEEETTCSS---------CEECSS--SCCE
T ss_pred EEeECCCCCCeeEEEecCcc---------EEEccC--CCCE
Confidence 57899999999999976553 366887 8764
No 16
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=84.50 E-value=0.36 Score=28.62 Aligned_cols=29 Identities=31% Similarity=0.644 Sum_probs=22.5
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCc
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~ 68 (72)
++++||.|++...+|-..|+- ..|.. ||.
T Consensus 33 m~VkCp~C~~~q~VFSha~t~---------V~C~~--Cg~ 61 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTA---------VTCES--CST 61 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSC---------CCCSS--SCC
T ss_pred EEEECCCCCCeeEEEecCCeE---------EEccc--cCC
Confidence 479999999999999776643 45666 765
No 17
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=81.23 E-value=1.6 Score=30.91 Aligned_cols=40 Identities=18% Similarity=0.502 Sum_probs=26.0
Q ss_pred eeeCCCCCCCceE-EEEeeccC--CCCCceEEEEecCCCCCceec
Q psy8689 30 EEKCPKCEHPRAY-FMQIQTRS--ADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~-~~q~Q~rs--adE~mTlfy~C~~~~Cg~~w~ 71 (72)
.+.||.||+.+.. |+..-.-+ ++++....++|.. |++-++
T Consensus 222 R~~C~~Cg~~~~l~y~~~e~~~~~~~~~~~r~e~C~~--C~~YlK 264 (309)
T 2fiy_A 222 RIKCSHCEESKHLAYLSLEHDGQPAEKAVLRAETCPS--CQGYLK 264 (309)
T ss_dssp TTSCSSSCCCSCCEEECCCC-CCCSTTCSEEEEEETT--TTEEEE
T ss_pred CcCCcCCCCCCCeeEEEecCccccCCCcceEEEEccc--ccchHh
Confidence 4689999986554 44332100 1346678899998 998664
No 18
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=79.77 E-value=2.6 Score=22.24 Aligned_cols=32 Identities=22% Similarity=0.559 Sum_probs=19.5
Q ss_pred CcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 27 DTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 27 ~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
.+....||+||+.-. +- +.. . -+.|-. ||++.
T Consensus 16 ~~~~k~CP~CG~~~f--m~-~~~------~-R~~C~k--CG~t~ 47 (50)
T 3j20_Y 16 IRKNKFCPRCGPGVF--MA-DHG------D-RWACGK--CGYTE 47 (50)
T ss_dssp ECSSEECSSSCSSCE--EE-ECS------S-EEECSS--SCCEE
T ss_pred EEecccCCCCCCceE--Ee-cCC------C-eEECCC--CCCEE
Confidence 344578999998642 22 111 1 357877 99863
No 19
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=78.60 E-value=1.3 Score=23.78 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=9.7
Q ss_pred eeeCCCCCCCce
Q psy8689 30 EEKCPKCEHPRA 41 (72)
Q Consensus 30 ~~~Cp~Cg~~~a 41 (72)
.++||.||.+-.
T Consensus 23 ~IrCpyCGyrii 34 (48)
T 4ayb_P 23 GVRCPYCGYKII 34 (48)
T ss_dssp SSCCTTTCCSCE
T ss_pred CcccCccCcEEE
Confidence 479999998754
No 20
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=77.35 E-value=2.1 Score=24.99 Aligned_cols=30 Identities=23% Similarity=0.719 Sum_probs=20.9
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
...||.||. ..+|... +-...|.. |++.|-
T Consensus 27 ~y~Cp~CG~-~~v~r~a---------tGiW~C~~--Cg~~~a 56 (83)
T 1vq8_Z 27 DHACPNCGE-DRVDRQG---------TGIWQCSY--CDYKFT 56 (83)
T ss_dssp CEECSSSCC-EEEEEEE---------TTEEEETT--TCCEEE
T ss_pred cCcCCCCCC-cceeccC---------CCeEECCC--CCCEec
Confidence 578999997 4555331 23688987 999863
No 21
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=77.24 E-value=0.58 Score=27.93 Aligned_cols=30 Identities=27% Similarity=0.464 Sum_probs=22.4
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
++++||.|++...+|-..|+ ...|.. ||..
T Consensus 35 m~VkCp~C~~~~~VFShA~t---------~V~C~~--Cgtv 64 (86)
T 3iz6_X 35 MDVKCQGCFNITTVFSHSQT---------VVVCPG--CQTV 64 (86)
T ss_dssp EEEECTTTCCEEEEETTCSS---------CCCCSS--SCCC
T ss_pred eEEECCCCCCeeEEEecCCc---------EEEccC--CCCE
Confidence 46999999999999976553 245766 7653
No 22
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=74.24 E-value=3.2 Score=27.30 Aligned_cols=32 Identities=31% Similarity=0.687 Sum_probs=24.9
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
+.|+.|++.+..+.-.. +.-.+|..|.. ||++
T Consensus 97 VlC~~C~sPdT~L~k~~-----~~r~~~l~C~A--CGa~ 128 (170)
T 2g2k_A 97 VLCPECENPETDLHVNP-----KKQTIGNSCKA--CGYR 128 (170)
T ss_dssp HSCTTTSSSCEEEEEET-----TTTEEEEEETT--TCCC
T ss_pred EECCCCCCCccEEEEec-----CCCEEEEEccc--cCCc
Confidence 78999999999876421 34568889988 9975
No 23
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.94 E-value=4.4 Score=26.29 Aligned_cols=32 Identities=31% Similarity=0.681 Sum_probs=24.8
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
+.|+.|++.+....-. .+.-.+|..|.. ||++
T Consensus 104 VlC~~C~sPdT~L~~~-----~~~r~~~l~C~A--CGa~ 135 (157)
T 2e9h_A 104 VLCPECENPETDLHVN-----PKKQTIGNSCKA--CGYR 135 (157)
T ss_dssp TSCTTTCCSCCEEEEE-----TTTTEEEEECSS--SCCE
T ss_pred EECCCCCCCccEEEEe-----cCCCEEEEEccC--CCCC
Confidence 7899999999987541 124578889988 9975
No 24
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=71.69 E-value=2.4 Score=22.88 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=19.7
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
..||.||+...+|=. .+--++|.+ ||....
T Consensus 12 ~~Cp~C~~~~lv~D~---------~~ge~vC~~--CGlVl~ 41 (58)
T 1dl6_A 12 VTCPNHPDAILVEDY---------RAGDMICPE--CGLVVG 41 (58)
T ss_dssp CSBTTBSSSCCEECS---------SSCCEECTT--TCCEEC
T ss_pred ccCcCCCCCceeEeC---------CCCeEEeCC--CCCEEe
Confidence 379999997765511 111278988 987643
No 25
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=70.64 E-value=4.4 Score=21.77 Aligned_cols=33 Identities=30% Similarity=0.732 Sum_probs=20.7
Q ss_pred CCcceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 26 VDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 26 ~~~t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
..+....||+||+.. |+... .| .+.|.. |+++.
T Consensus 14 i~~~~~fCPkCG~~~--~ma~~---~d-----r~~C~k--Cgyt~ 46 (55)
T 2k4x_A 14 LVRKHRFCPRCGPGV--FLAEH---AD-----RYSCGR--CGYTE 46 (55)
T ss_dssp CCCSSCCCTTTTTTC--CCEEC---SS-----EEECTT--TCCCE
T ss_pred EEEccccCcCCCCce--eEecc---CC-----EEECCC--CCCEE
Confidence 344567899999865 22211 11 577987 99863
No 26
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=70.27 E-value=0.83 Score=29.14 Aligned_cols=30 Identities=20% Similarity=0.584 Sum_probs=19.2
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
+.|+.|++.+....- +.-.+|..|.. ||++
T Consensus 104 VlC~~C~sPdT~l~k-------~~r~~~l~C~A--CGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKK-------EKKSWYIVCLA--CGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCS-------SCSTTTSSCCC------
T ss_pred eECCCCCCcCcEEEE-------eCCeEEEEecC--CCCC
Confidence 789999999985421 33457778988 9874
No 27
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=70.16 E-value=1.7 Score=25.28 Aligned_cols=15 Identities=20% Similarity=0.450 Sum_probs=11.1
Q ss_pred CcceeeCCCCCCCce
Q psy8689 27 DTTEEKCPKCEHPRA 41 (72)
Q Consensus 27 ~~t~~~Cp~Cg~~~a 41 (72)
+.+...||+||++-.
T Consensus 27 ~~~k~FCp~CGn~TL 41 (79)
T 2con_A 27 DMNRVFCGHCGNKTL 41 (79)
T ss_dssp CSSCCSCSSSCCSCC
T ss_pred CcccccccccCcccc
Confidence 345678999999644
No 28
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=69.87 E-value=2.4 Score=29.74 Aligned_cols=33 Identities=24% Similarity=0.764 Sum_probs=20.5
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
...||.||+....-|..-. |..=|| |.+ |+..+
T Consensus 34 n~yCPnCG~~~l~~f~nN~-----PVaDF~-C~~--C~Eey 66 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNR-----PVADFY-CNH--CSEEF 66 (257)
T ss_dssp HCCCTTTCCSSCEEC---------CCCEEE-CTT--TCCEE
T ss_pred CCcCCCCCChhhhhccCCC-----cccccc-cCC--cchhh
Confidence 4689999998765555433 444465 877 97654
No 29
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=67.08 E-value=4.7 Score=26.75 Aligned_cols=29 Identities=17% Similarity=0.326 Sum_probs=19.2
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
...||.||...+.++- . | + + +.|-+ ||+.
T Consensus 14 ~~~CP~Cg~~d~~~~~-~----d-g-~--~~C~~--Cg~~ 42 (255)
T 1nui_A 14 HIPCDNCGSSDGNSLF-S----D-G-H--TFCYV--CEKW 42 (255)
T ss_dssp EECCSSSCCSSCEEEE-T----T-S-C--EEETT--TCCE
T ss_pred CCcCCCCCCCCCceEe-C----C-C-C--eeccc--CCCc
Confidence 4789999986653322 1 2 3 2 78988 9974
No 30
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=64.94 E-value=1.8 Score=27.91 Aligned_cols=31 Identities=29% Similarity=0.659 Sum_probs=23.5
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
+.|+.|++.+....- +.-.+|..|.. ||.+.
T Consensus 105 VlC~~C~sPdT~L~k-------~~r~~~l~C~A--CGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIK-------RDRFHFLKCEA--CGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCB-------SSSSBCCCCSS--SCCCC
T ss_pred EECCCCCCcCcEEEE-------eCCEEEEEecC--CCCCc
Confidence 789999999985532 23467888988 99763
No 31
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=62.39 E-value=3.2 Score=23.19 Aligned_cols=13 Identities=23% Similarity=0.588 Sum_probs=9.8
Q ss_pred ceeeCCCCCCCce
Q psy8689 29 TEEKCPKCEHPRA 41 (72)
Q Consensus 29 t~~~Cp~Cg~~~a 41 (72)
..+.||.||++-.
T Consensus 37 ~~iRC~~CG~RIL 49 (63)
T 3h0g_L 37 EVIRCRECGHRVM 49 (63)
T ss_dssp SCCCCSSSCCCCC
T ss_pred CceECCCCCcEEE
Confidence 4589999998644
No 32
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=60.76 E-value=8.4 Score=21.40 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=20.1
Q ss_pred eeCCCCCCCceEE------EEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYF------MQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~------~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
.+||.||+..... +.....+.--+.--.+.|.. ||-.|
T Consensus 3 m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~--CGE~~ 46 (78)
T 3ga8_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVH--CEESI 46 (78)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETT--TCCEE
T ss_pred eECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCC--CCCEE
Confidence 3799999875432 11111111111224578987 98765
No 33
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=60.20 E-value=11 Score=27.73 Aligned_cols=40 Identities=28% Similarity=0.578 Sum_probs=25.0
Q ss_pred ceeeCCCCCCCceEEEEeeccCC--CCCceEEEEecCCCCCceec
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSA--DEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsa--dE~mTlfy~C~~~~Cg~~w~ 71 (72)
....||.||++..+-+. .+... .|=+-.-+.|-. ||++..
T Consensus 219 ~~s~Cp~C~~~~~t~~~-~~~IP~F~eViims~~C~~--CGyr~n 260 (404)
T 2qkd_A 219 FNTNCPECNAPAQTNMK-LVQIPHFKEVIIMATNCEN--CGHRTN 260 (404)
T ss_dssp EEECCTTTCCTTCEEEE-EECCTTSCCEEEEEEECSS--SCCEEE
T ss_pred ecccCccCCCccEEEEE-EEeCCCCCcEEEEEEECCC--CCCccc
Confidence 45789999987665332 22332 222344577977 999864
No 34
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=58.29 E-value=13 Score=21.88 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=21.2
Q ss_pred eeCCCCCCCceEEEE--eeccCCCCCce----EEEEecCCCCCceec
Q psy8689 31 EKCPKCEHPRAYFMQ--IQTRSADEPMT----TFYKCCNIKCGFRWR 71 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q--~Q~rsadE~mT----lfy~C~~~~Cg~~w~ 71 (72)
..||.||+...+.-. ....-.++..+ -+++|.+ ||..+-
T Consensus 3 M~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~--CGE~~~ 47 (133)
T 3o9x_A 3 MKCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVH--CEESIM 47 (133)
T ss_dssp CBCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESS--SSCEEC
T ss_pred cCCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCC--CCCEee
Confidence 479999987543211 11111122222 4678988 997653
No 35
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=56.21 E-value=1.8 Score=27.54 Aligned_cols=30 Identities=27% Similarity=0.720 Sum_probs=23.4
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
+.|+.|++.+....- +.-.+|..|.. ||++
T Consensus 103 VlC~~C~sPdT~l~k-------~~r~~~l~C~A--CGa~ 132 (138)
T 1nee_A 103 VICHECNRPDTRIIR-------EGRISLLKCEA--CGAK 132 (138)
T ss_dssp HHHTCCSSCSSCCEE-------ETTTTEEECST--TSCC
T ss_pred EECCCCCCcCcEEEE-------cCCeEEEEccC--CCCC
Confidence 789999999987653 23457889988 9975
No 36
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=55.35 E-value=4 Score=23.06 Aligned_cols=9 Identities=33% Similarity=1.036 Sum_probs=5.4
Q ss_pred eeCCCCCCC
Q psy8689 31 EKCPKCEHP 39 (72)
Q Consensus 31 ~~Cp~Cg~~ 39 (72)
+.||.||++
T Consensus 46 irCp~CG~R 54 (70)
T 1twf_L 46 VRCKDCGHR 54 (70)
T ss_dssp TCCSSSCCC
T ss_pred ccCCCCCce
Confidence 456666663
No 37
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=54.69 E-value=6.2 Score=23.68 Aligned_cols=15 Identities=20% Similarity=0.527 Sum_probs=11.6
Q ss_pred ee-eCCCCCCCceEEE
Q psy8689 30 EE-KCPKCEHPRAYFM 44 (72)
Q Consensus 30 ~~-~Cp~Cg~~~a~~~ 44 (72)
.. .||.||+....+.
T Consensus 89 ~~~~CP~Cgs~~~~i~ 104 (119)
T 2kdx_A 89 DYGVCEKCHSKNVIIT 104 (119)
T ss_dssp TTCCCSSSSSCCCEEE
T ss_pred CCCcCccccCCCcEEe
Confidence 35 7999999977653
No 38
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=52.13 E-value=8.1 Score=24.05 Aligned_cols=14 Identities=29% Similarity=0.463 Sum_probs=11.2
Q ss_pred eeeCCCCCCCceEE
Q psy8689 30 EEKCPKCEHPRAYF 43 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~ 43 (72)
...||.||+....-
T Consensus 107 ~~~CP~Cgs~~~~i 120 (139)
T 3a43_A 107 FLACPKCGSHDFEV 120 (139)
T ss_dssp GCSCSSSSCCCEEE
T ss_pred CCcCccccCCccEE
Confidence 46899999998753
No 39
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=52.09 E-value=4.3 Score=21.20 Aligned_cols=14 Identities=29% Similarity=0.612 Sum_probs=11.6
Q ss_pred eeCCCCCCCceEEE
Q psy8689 31 EKCPKCEHPRAYFM 44 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~ 44 (72)
..||.||.....|.
T Consensus 31 w~CP~Cg~~k~~F~ 44 (46)
T 6rxn_A 31 WCCPVCGVSKDQFS 44 (46)
T ss_dssp CBCTTTCCBGGGEE
T ss_pred CcCcCCCCcHHHcE
Confidence 68999999887664
No 40
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=49.64 E-value=23 Score=20.09 Aligned_cols=30 Identities=33% Similarity=0.913 Sum_probs=20.9
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
....||.||.... - |. .+-+..|.. |+..|
T Consensus 26 ~ky~C~fCgk~~v-k-----R~----a~GIW~C~~--C~~~~ 55 (73)
T 1ffk_W 26 KKYKCPVCGFPKL-K-----RA----STSIWVCGH--CGYKI 55 (73)
T ss_pred cCccCCCCCCcee-E-----EE----EeEEEECCC--CCcEE
Confidence 3568999996543 2 21 366789988 99876
No 41
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=48.66 E-value=2.9 Score=32.13 Aligned_cols=32 Identities=13% Similarity=-0.021 Sum_probs=15.6
Q ss_pred eCCCCCCCceEEEEeeccCCCCCceEEEEecC-CCCCce
Q psy8689 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN-IKCGFR 69 (72)
Q Consensus 32 ~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~-~~Cg~~ 69 (72)
.||+||....+-.. .+ .+ ..||.|.+ |+|.+.
T Consensus 574 ~CP~Cg~g~l~~r~--~k---~G-~~f~gCs~yp~C~f~ 606 (633)
T 2gai_A 574 FYLKCECGKTRSVK--ND---EI-AVIDDGKIFLGRKDS 606 (633)
T ss_dssp EEEECSSSCCEECC--TT---SB-CEEETTEEEC-----
T ss_pred cCcccCCCcceeec--cc---CC-CeEEeCCCCcCCCCe
Confidence 59999854443321 11 11 36899986 679876
No 42
>2jox_A Churchill protein; zinc, transcription; NMR {Homo sapiens}
Probab=48.31 E-value=21 Score=21.83 Aligned_cols=37 Identities=16% Similarity=0.342 Sum_probs=21.8
Q ss_pred eeCCCCCCCceEEEEeeccCCCCC---ceEEEEecCCCCCce
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEP---MTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~---mTlfy~C~~~~Cg~~ 69 (72)
+-|.+|+.+..+-.+.+.-+-+++ .|.=-+|.+ |+|.
T Consensus 27 ~gC~~C~~~~~~~v~nk~~~eedgeEiity~H~C~n--C~Hv 66 (106)
T 2jox_A 27 TGCAVCSKRDFMLITNKSLKEEDGEEIVTYDHLCKN--CHHV 66 (106)
T ss_dssp CCCSSSCCSSCEEEEEEEEEEETTEEEEEEEEEETT--TCCE
T ss_pred hhhhhcCCCceEEEeccccccCCCcEEEEEEEecCC--CceE
Confidence 568888888766655554433333 222234877 8774
No 43
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=46.46 E-value=8.6 Score=18.66 Aligned_cols=11 Identities=45% Similarity=0.911 Sum_probs=8.5
Q ss_pred EEEEecCCCCCce
Q psy8689 57 TFYKCCNIKCGFR 69 (72)
Q Consensus 57 lfy~C~~~~Cg~~ 69 (72)
-||+|.. ||+.
T Consensus 5 ~fY~C~~--CGni 15 (36)
T 1dxg_A 5 DVYKCEL--CGQV 15 (36)
T ss_dssp CEEECTT--TCCE
T ss_pred cEEEcCC--CCcE
Confidence 4899977 9874
No 44
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=44.29 E-value=16 Score=22.65 Aligned_cols=31 Identities=23% Similarity=0.744 Sum_probs=20.7
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
....||.||.. .+... | +-...|.. |++.|-
T Consensus 59 akytCPfCGk~-~vKR~-----a----vGIW~C~~--Cgk~fA 89 (116)
T 3cc2_Z 59 EDHACPNCGED-RVDRQ-----G----TGIWQCSY--CDYKFT 89 (116)
T ss_dssp SCEECSSSCCE-EEEEE-----E----TTEEEETT--TCCEEE
T ss_pred cCCcCCCCCCc-eeEec-----C----ceeEECCC--CCCEEE
Confidence 45789999963 33322 2 23688988 999863
No 45
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=43.79 E-value=12 Score=14.97 Aligned_cols=11 Identities=36% Similarity=0.824 Sum_probs=6.9
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. ||..|.
T Consensus 4 ~~C~~--C~k~f~ 14 (27)
T 2kvh_A 4 FSCSL--CPQRSR 14 (27)
T ss_dssp EECSS--SSCEES
T ss_pred ccCCC--cChhhC
Confidence 56665 776654
No 46
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=42.90 E-value=7.9 Score=20.51 Aligned_cols=16 Identities=31% Similarity=0.808 Sum_probs=12.8
Q ss_pred eeeCCCCCCCceEEEE
Q psy8689 30 EEKCPKCEHPRAYFMQ 45 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q 45 (72)
+..||.||.....|..
T Consensus 35 dw~CP~Cg~~K~~F~~ 50 (52)
T 1yk4_A 35 DWVCPLCGAPKSEFER 50 (52)
T ss_dssp TCBCTTTCCBGGGEEE
T ss_pred CCcCCCCCCCHHHcEE
Confidence 3689999998887754
No 47
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=42.77 E-value=25 Score=20.37 Aligned_cols=9 Identities=44% Similarity=1.220 Sum_probs=4.3
Q ss_pred eeCCCCCCC
Q psy8689 31 EKCPKCEHP 39 (72)
Q Consensus 31 ~~Cp~Cg~~ 39 (72)
+.||.|++.
T Consensus 3 ~~CP~C~~~ 11 (81)
T 2jrp_A 3 ITCPVCHHA 11 (81)
T ss_dssp CCCSSSCSC
T ss_pred CCCCCCCCc
Confidence 345555543
No 48
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=41.77 E-value=7.7 Score=20.79 Aligned_cols=17 Identities=29% Similarity=0.599 Sum_probs=13.7
Q ss_pred eeeCCCCCCCceEEEEe
Q psy8689 30 EEKCPKCEHPRAYFMQI 46 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~ 46 (72)
+..||.||.....|..+
T Consensus 36 dw~CP~Cga~K~~F~~~ 52 (55)
T 2v3b_B 36 DWVCPDCGVGKIDFEMI 52 (55)
T ss_dssp TCCCTTTCCCGGGEEEC
T ss_pred CCcCCCCCCCHHHceec
Confidence 36899999998888653
No 49
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=41.17 E-value=29 Score=20.58 Aligned_cols=31 Identities=19% Similarity=0.374 Sum_probs=21.2
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
....||.||.... - |. .+-+..|.. |++.|-
T Consensus 35 ~ky~CpfCgk~~v-k-----R~----a~GIW~C~~--Cg~~~A 65 (92)
T 3iz5_m 35 SKYFCEFCGKFAV-K-----RK----AVGIWGCKD--CGKVKA 65 (92)
T ss_dssp SCBCCTTTCSSCB-E-----EE----ETTEEECSS--SCCEEE
T ss_pred ccccCcccCCCee-E-----ec----CcceEEcCC--CCCEEe
Confidence 3568999998853 1 21 244688988 998873
No 50
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.68 E-value=21 Score=20.80 Aligned_cols=31 Identities=26% Similarity=0.688 Sum_probs=21.3
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
....||.||.... - |. .+-+..|.. |++.|-
T Consensus 34 ~ky~CpfCGk~~v-k-----R~----a~GIW~C~k--Cg~~~A 64 (83)
T 3j21_i 34 QKHTCPVCGRKAV-K-----RI----STGIWQCQK--CGATFA 64 (83)
T ss_dssp SCBCCSSSCSSCE-E-----EE----ETTEEEETT--TCCEEE
T ss_pred cccCCCCCCCcee-E-----ec----CcCeEEcCC--CCCEEe
Confidence 3568999998853 2 21 244688988 998873
No 51
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A
Probab=40.24 E-value=22 Score=23.46 Aligned_cols=20 Identities=25% Similarity=0.501 Sum_probs=13.5
Q ss_pred CccccccCCcceeeCCCCCC
Q psy8689 19 GAAAWENVDTTEEKCPKCEH 38 (72)
Q Consensus 19 ~~~~~~~~~~t~~~Cp~Cg~ 38 (72)
|-...+...+.++.||+|..
T Consensus 123 GlSd~pg~~~VKlyCP~C~D 142 (182)
T 1qf8_A 123 GLSDIPGEAMVKLYCPKCMD 142 (182)
T ss_dssp CSCSSTTSCBCEEECTTTCC
T ss_pred ccCCCCCCCceEEECCCccc
Confidence 33344556667889999975
No 52
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=40.23 E-value=30 Score=23.26 Aligned_cols=30 Identities=20% Similarity=0.380 Sum_probs=19.5
Q ss_pred eeCCCCCCC--ceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 31 EKCPKCEHP--RAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 31 ~~Cp~Cg~~--~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
..||.||+. ..++=. .+--++|.+ ||..+.
T Consensus 22 ~~CPECGs~~t~IV~D~---------erGE~VCsd--CGLVLE 53 (197)
T 3k1f_M 22 LTCPECKVYPPKIVERF---------SEGDVVCAL--CGLVLS 53 (197)
T ss_dssp CCCTTTCCSSCCEEEEG---------GGTEEEETT--TCBBCC
T ss_pred eECcCCCCcCCeEEEeC---------CCCEEEEcC--CCCCcC
Confidence 589999984 444311 122478988 998654
No 53
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=39.47 E-value=15 Score=14.65 Aligned_cols=11 Identities=45% Similarity=1.216 Sum_probs=6.6
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 4 ~~C~~--C~k~f~ 14 (28)
T 2kvf_A 4 YSCSV--CGKRFS 14 (28)
T ss_dssp EECSS--SCCEES
T ss_pred ccCCC--CCcccC
Confidence 55655 766653
No 54
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=38.75 E-value=17 Score=14.49 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=7.3
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.-+.|+..|.
T Consensus 3 ~~C~~~~C~k~f~ 15 (29)
T 2ab3_A 3 YVCHFENCGRSFN 15 (29)
T ss_dssp EEECSTTTCEEES
T ss_pred CCCcCCcCcCccC
Confidence 5676112877664
No 55
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=38.42 E-value=16 Score=14.76 Aligned_cols=11 Identities=27% Similarity=0.642 Sum_probs=7.2
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. ||..|.
T Consensus 4 ~~C~~--C~k~f~ 14 (27)
T 2kvg_A 4 YRCPL--CRAGCP 14 (27)
T ss_dssp EEETT--TTEEES
T ss_pred cCCCC--CCcccC
Confidence 56766 777664
No 56
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=38.22 E-value=35 Score=24.00 Aligned_cols=28 Identities=25% Similarity=0.568 Sum_probs=18.7
Q ss_pred eeCCCCCC--CceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEH--PRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~--~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
..||.||+ ...++ - ..+-.++|.+ ||..
T Consensus 22 ~~Cp~C~~~~~~lv~-D--------~~~G~~vC~~--CGlV 51 (345)
T 4bbr_M 22 LTCPECKVYPPKIVE-R--------FSEGDVVCAL--CGLV 51 (345)
T ss_dssp CCCSSCCCSSCCEEE-E--------GGGTEEEETT--TCBE
T ss_pred CcCCCCCCCCCceeE-E--------CCCCcEEeCC--CCCC
Confidence 57999997 34433 2 1233688998 9965
No 57
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=37.59 E-value=11 Score=22.76 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=28.5
Q ss_pred eeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
...|..|+++.+..+.. .|-+.=++|..|-. |.+.
T Consensus 13 ~FTC~~C~tRs~k~iSk---~aY~~GvViv~C~g--C~n~ 47 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSK---QAYEKGTVLISCPH--CKVR 47 (100)
T ss_dssp EEEETTTTEEEEEEEEH---HHHHTSEEEEECTT--TCCE
T ss_pred EEEccCCCCcchhhcCH---HHhhCCEEEEEcCC--Cccc
Confidence 47899999999888874 46677789999976 9865
No 58
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=37.04 E-value=7.5 Score=20.60 Aligned_cols=15 Identities=27% Similarity=0.687 Sum_probs=11.8
Q ss_pred eeeCCCCCCCceEEE
Q psy8689 30 EEKCPKCEHPRAYFM 44 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~ 44 (72)
+..||.||.....|.
T Consensus 36 dw~CP~Cg~~K~~F~ 50 (52)
T 1e8j_A 36 DWACPVCGASKDAFE 50 (52)
T ss_dssp TCCCSSSCCCTTSCE
T ss_pred CCcCCCCCCcHHHcE
Confidence 468999999877664
No 59
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=36.20 E-value=11 Score=20.28 Aligned_cols=16 Identities=25% Similarity=0.567 Sum_probs=12.8
Q ss_pred eeeCCCCCCCceEEEE
Q psy8689 30 EEKCPKCEHPRAYFMQ 45 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q 45 (72)
+..||.||.....|..
T Consensus 36 dw~CP~Cg~~K~~F~~ 51 (54)
T 4rxn_A 36 DWVCPLCGVGKDEFEE 51 (54)
T ss_dssp TCBCTTTCCBGGGEEE
T ss_pred CCcCcCCCCcHHHceE
Confidence 3689999998887754
No 60
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.97 E-value=18 Score=14.37 Aligned_cols=11 Identities=36% Similarity=1.038 Sum_probs=6.5
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 4 ~~C~~--C~~~f~ 14 (30)
T 2m0d_A 4 YQCDY--CGRSFS 14 (30)
T ss_dssp EECTT--TCCEES
T ss_pred ccCCC--CCcccC
Confidence 55655 766653
No 61
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=35.46 E-value=20 Score=17.95 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=8.1
Q ss_pred ceeeCCCCCCC
Q psy8689 29 TEEKCPKCEHP 39 (72)
Q Consensus 29 t~~~Cp~Cg~~ 39 (72)
....|++||..
T Consensus 8 ~~~~C~~C~~~ 18 (39)
T 2i5o_A 8 DQVPCEKCGSL 18 (39)
T ss_dssp CEEECTTTCCE
T ss_pred CCcccccccCc
Confidence 34689999864
No 62
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=35.46 E-value=38 Score=20.08 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=20.8
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
....||.||.... - |. .+-+..|.. |++.|-
T Consensus 35 ~ky~CpfCgk~~v-k-----R~----a~GIW~C~~--C~~~~A 65 (92)
T 3izc_m 35 ARYDCSFCGKKTV-K-----RG----AAGIWTCSC--CKKTVA 65 (92)
T ss_dssp SCCCCSSSCSSCC-E-----EE----ETTEEECTT--TCCEEE
T ss_pred cCCcCCCCCCcee-e-----ec----ccceEEcCC--CCCEEe
Confidence 3568999997753 1 21 234688988 998763
No 63
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=35.20 E-value=14 Score=17.08 Aligned_cols=10 Identities=20% Similarity=0.813 Sum_probs=7.5
Q ss_pred eeeCCCCCCC
Q psy8689 30 EEKCPKCEHP 39 (72)
Q Consensus 30 ~~~Cp~Cg~~ 39 (72)
...|+.|+..
T Consensus 3 ~~~C~~C~k~ 12 (31)
T 1zfo_A 3 NPNCARCGKI 12 (31)
T ss_dssp CCBCSSSCSB
T ss_pred CCcCCccCCE
Confidence 4579999865
No 64
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=34.96 E-value=11 Score=21.11 Aligned_cols=17 Identities=35% Similarity=0.850 Sum_probs=14.1
Q ss_pred eeeCCCCCCCceEEEEe
Q psy8689 30 EEKCPKCEHPRAYFMQI 46 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~ 46 (72)
+..||.||.....|..+
T Consensus 40 dw~CP~Cga~K~~F~~~ 56 (70)
T 1dx8_A 40 SFMCPACRSPKNQFKSI 56 (70)
T ss_dssp TCBCTTTCCBGGGEEEC
T ss_pred CCcCCCCCCCHHHceEc
Confidence 36899999999888764
No 65
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=34.17 E-value=31 Score=21.32 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=7.8
Q ss_pred eeCCCCCCCce
Q psy8689 31 EKCPKCEHPRA 41 (72)
Q Consensus 31 ~~Cp~Cg~~~a 41 (72)
..||+||+.-.
T Consensus 4 ~~C~~CG~~~~ 14 (189)
T 3cng_A 4 KFCSQCGGEVI 14 (189)
T ss_dssp CBCTTTCCBCE
T ss_pred ccCchhCCccc
Confidence 36888887765
No 66
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=33.73 E-value=24 Score=13.98 Aligned_cols=10 Identities=30% Similarity=0.962 Sum_probs=5.6
Q ss_pred EEecCCCCCcee
Q psy8689 59 YKCCNIKCGFRW 70 (72)
Q Consensus 59 y~C~~~~Cg~~w 70 (72)
|.|.. |+..|
T Consensus 3 ~~C~~--C~k~f 12 (29)
T 1rik_A 3 FACPE--CPKRF 12 (29)
T ss_dssp EECSS--SSCEE
T ss_pred ccCCC--CCchh
Confidence 45655 66555
No 67
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=33.15 E-value=27 Score=21.04 Aligned_cols=24 Identities=13% Similarity=0.267 Sum_probs=13.5
Q ss_pred cccCCccccccCCcceeeCCCCCCCc
Q psy8689 15 HVMGGAAAWENVDTTEEKCPKCEHPR 40 (72)
Q Consensus 15 ~v~~~~~~~~~~~~t~~~Cp~Cg~~~ 40 (72)
||+|.... ........||+|+..-
T Consensus 57 DIfG~~~~--~~~s~~~~C~nC~R~v 80 (99)
T 3mhs_C 57 DINGLQKQ--QESSQYIHCENCGRDV 80 (99)
T ss_dssp CTTSCCCC--CTTSCEEECTTTCCEE
T ss_pred ccCCCcCc--ccCCCeEECCCCCCCc
Confidence 66654332 1233357899998643
No 68
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=32.96 E-value=14 Score=21.48 Aligned_cols=17 Identities=24% Similarity=0.714 Sum_probs=14.1
Q ss_pred eeeCCCCCCCceEEEEe
Q psy8689 30 EEKCPKCEHPRAYFMQI 46 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~ 46 (72)
+..||.||.....|..+
T Consensus 60 dW~CPvCga~K~~F~~i 76 (81)
T 2kn9_A 60 DWSCPDCGAAKSDFEMV 76 (81)
T ss_dssp TCCCTTTCCCGGGEEEE
T ss_pred CCcCCCCCCCHHHcEEc
Confidence 36899999999888764
No 69
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=31.52 E-value=24 Score=13.85 Aligned_cols=11 Identities=36% Similarity=1.002 Sum_probs=6.2
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 3 ~~C~~--C~k~f~ 13 (29)
T 2m0f_A 3 LKCRE--CGKQFT 13 (29)
T ss_dssp EECTT--TSCEES
T ss_pred ccCCC--CCCccC
Confidence 45655 666553
No 70
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=30.66 E-value=15 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.547 Sum_probs=19.9
Q ss_pred eeCCCCCC------CceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEH------PRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~------~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
..|.+|+. +..+... ..+ ...+.|.|.. |||.
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~--~~~---~~~vv~tCl~--Cg~~ 103 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLR--TKR---MPHVVITCLE--CGYI 103 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEE--CSS---SCEEEEEETT--TCCE
T ss_pred HhccCCCCEeECCCceEEEEe--cCC---ccEEEEECCC--CCCE
Confidence 48999985 2222222 111 1368899999 9985
No 71
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.35 E-value=26 Score=14.97 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=6.8
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (36)
T 2elq_A 10 FKCSL--CEYATR 20 (36)
T ss_dssp EECSS--SSCEES
T ss_pred ccCCC--CCchhC
Confidence 56665 766653
No 72
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=36.32 E-value=11 Score=15.00 Aligned_cols=10 Identities=50% Similarity=1.265 Sum_probs=5.7
Q ss_pred EEecCCCCCcee
Q psy8689 59 YKCCNIKCGFRW 70 (72)
Q Consensus 59 y~C~~~~Cg~~w 70 (72)
|.|.. ||..|
T Consensus 3 ~~C~~--C~k~f 12 (26)
T 2lvu_A 3 YVCER--CGKRF 12 (26)
Confidence 45655 66655
No 73
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=30.05 E-value=26 Score=14.79 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=6.9
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 8 ~~C~~--C~k~f~ 18 (35)
T 1srk_A 8 FVCRI--CLSAFT 18 (35)
T ss_dssp EECSS--SCCEES
T ss_pred eeCCC--CCcccC
Confidence 56765 776653
No 74
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.80 E-value=28 Score=15.17 Aligned_cols=11 Identities=27% Similarity=0.827 Sum_probs=6.8
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (37)
T 2elm_A 10 YYCSQ--CHYSSI 20 (37)
T ss_dssp EECSS--SSCEEE
T ss_pred eECCC--CCcccC
Confidence 56665 766654
No 75
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=29.78 E-value=27 Score=19.61 Aligned_cols=7 Identities=29% Similarity=1.018 Sum_probs=5.1
Q ss_pred eCCCCCC
Q psy8689 32 KCPKCEH 38 (72)
Q Consensus 32 ~Cp~Cg~ 38 (72)
-||.|+.
T Consensus 27 wCP~C~~ 33 (86)
T 2ct7_A 27 WCAQCSF 33 (86)
T ss_dssp CCSSSCC
T ss_pred ECcCCCc
Confidence 4997765
No 76
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=29.23 E-value=28 Score=14.58 Aligned_cols=11 Identities=27% Similarity=0.703 Sum_probs=6.6
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 8 ~~C~~--C~k~f~ 18 (35)
T 2elx_A 8 YVCAL--CLKKFV 18 (35)
T ss_dssp EECSS--SCCEES
T ss_pred eECCC--CcchhC
Confidence 56655 666653
No 77
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=28.28 E-value=17 Score=21.35 Aligned_cols=17 Identities=18% Similarity=0.579 Sum_probs=13.4
Q ss_pred eeeCCCCCCCceEEEEe
Q psy8689 30 EEKCPKCEHPRAYFMQI 46 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~~~q~ 46 (72)
+..||.||.....|..+
T Consensus 68 dW~CPvCga~K~~F~~i 84 (87)
T 1s24_A 68 DWCCPDCGATKEDYVLY 84 (87)
T ss_dssp TCCCSSSCCCGGGEEEC
T ss_pred CCCCCCCCCCHHHhhhc
Confidence 35799999988887653
No 78
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.25 E-value=29 Score=14.78 Aligned_cols=11 Identities=27% Similarity=0.975 Sum_probs=6.6
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (36)
T 2elv_A 10 YDCHI--CERKFK 20 (36)
T ss_dssp EECSS--SCCEES
T ss_pred eECCC--CCCccC
Confidence 56655 666553
No 79
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=28.11 E-value=43 Score=20.30 Aligned_cols=31 Identities=23% Similarity=0.451 Sum_probs=20.9
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
....||.||.... - |. .+-++.|.. |++.|-
T Consensus 35 aky~CpfCgk~~v-K-----R~----a~GIW~C~k--Cg~~~A 65 (103)
T 4a17_Y 35 AKYGCPFCGKVAV-K-----RA----AVGIWKCKP--CKKIIA 65 (103)
T ss_dssp SCEECTTTCCEEE-E-----EE----ETTEEEETT--TTEEEE
T ss_pred cCCCCCCCCCcee-e-----ec----CcceEEcCC--CCCEEe
Confidence 3568999997743 2 21 244688988 998863
No 80
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=27.95 E-value=20 Score=20.78 Aligned_cols=10 Identities=40% Similarity=1.059 Sum_probs=7.8
Q ss_pred eeeCCCCCCC
Q psy8689 30 EEKCPKCEHP 39 (72)
Q Consensus 30 ~~~Cp~Cg~~ 39 (72)
...||-||+.
T Consensus 47 g~~CPvCgs~ 56 (112)
T 1l8d_A 47 KGKCPVCGRE 56 (112)
T ss_dssp SEECTTTCCE
T ss_pred CCCCCCCCCc
Confidence 4579999974
No 81
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.75 E-value=31 Score=14.82 Aligned_cols=11 Identities=36% Similarity=0.869 Sum_probs=6.6
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (37)
T 2elp_A 10 MKCPY--CDFYFM 20 (37)
T ss_dssp EECSS--SSCEEC
T ss_pred eECCC--CChhhc
Confidence 56655 766653
No 82
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=26.91 E-value=14 Score=14.58 Aligned_cols=10 Identities=40% Similarity=0.946 Sum_probs=5.0
Q ss_pred EEecCCCCCcee
Q psy8689 59 YKCCNIKCGFRW 70 (72)
Q Consensus 59 y~C~~~~Cg~~w 70 (72)
|.|.. |+..|
T Consensus 2 ~~C~~--C~k~f 11 (27)
T 1znf_A 2 YKCGL--CERSF 11 (27)
T ss_dssp CBCSS--SCCBC
T ss_pred ccCCC--CCCcC
Confidence 34544 65554
No 83
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=26.70 E-value=1.1e+02 Score=18.47 Aligned_cols=32 Identities=22% Similarity=0.489 Sum_probs=19.9
Q ss_pred eeCCCCCC------CceEEEEeeccCCCCCceEEEEecCCCCCce
Q psy8689 31 EKCPKCEH------PRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69 (72)
Q Consensus 31 ~~Cp~Cg~------~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~ 69 (72)
..|.+|+. +..+... ..+ ...+.|.|.. |||.
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~--~~~---k~~vv~tCl~--Cg~~ 98 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLR--QKR---MPHIVVKCLE--CGHI 98 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEE--CSS---SCEEEEEETT--TTEE
T ss_pred HhccCCCCEeECCCceEEEEe--cCC---ccEEEEECCC--CCCE
Confidence 47999985 2222222 111 2368899999 9985
No 84
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=26.50 E-value=1.1e+02 Score=21.04 Aligned_cols=39 Identities=18% Similarity=0.389 Sum_probs=21.8
Q ss_pred eeeCCCCCCCceE-EEEe-------eccCC-C---CC--ceEEEEecCCCCCceec
Q psy8689 30 EEKCPKCEHPRAY-FMQI-------QTRSA-D---EP--MTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 30 ~~~Cp~Cg~~~a~-~~q~-------Q~rsa-d---E~--mTlfy~C~~~~Cg~~w~ 71 (72)
...||-||+. .. |... ...++ + ++ .-.++.|.+ ||+.+.
T Consensus 12 ~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~--Cg~v~~ 64 (416)
T 4e2x_A 12 PTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDS--CEMVQL 64 (416)
T ss_dssp CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETT--TCCEEE
T ss_pred CCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCC--CCceee
Confidence 3579999999 43 3222 11111 1 11 124577988 998764
No 85
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.39 E-value=33 Score=18.18 Aligned_cols=11 Identities=27% Similarity=0.957 Sum_probs=8.4
Q ss_pred ceeeCCCCCCC
Q psy8689 29 TEEKCPKCEHP 39 (72)
Q Consensus 29 t~~~Cp~Cg~~ 39 (72)
+...||+|+..
T Consensus 11 ~~~~CPrCn~~ 21 (49)
T 2e72_A 11 GRKICPRCNAQ 21 (49)
T ss_dssp SCCCCTTTCCC
T ss_pred CceeCCccccc
Confidence 45789999854
No 86
>2hgo_A CASSIICOLIN; toxin, disulfide bridge, glycoprotein; HET: PCA 3HD; NMR {Corynespora cassiicola}
Probab=26.18 E-value=24 Score=16.28 Aligned_cols=6 Identities=50% Similarity=1.575 Sum_probs=4.7
Q ss_pred CCceec
Q psy8689 66 CGFRWR 71 (72)
Q Consensus 66 Cg~~w~ 71 (72)
||+.|-
T Consensus 18 cgnswa 23 (27)
T 2hgo_A 18 CGNSWA 23 (27)
T ss_dssp SSCEEE
T ss_pred cCCccc
Confidence 888883
No 87
>3r8s_0 50S ribosomal protein L32; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Z 1p86_Z 2awb_0 2aw4_0 2i2v_0 2j28_0 2i2t_0* 2qao_0* 2qba_0* 2qbc_0* 2qbe_0 2qbg_0 2qbi_0* 2qbk_0* 2qov_0 2qox_0 2qoz_0* 2qp1_0* 2rdo_0 2vhm_0 ...
Probab=26.04 E-value=48 Score=17.62 Aligned_cols=9 Identities=0% Similarity=-0.304 Sum_probs=7.6
Q ss_pred eeeCCCCCC
Q psy8689 30 EEKCPKCEH 38 (72)
Q Consensus 30 ~~~Cp~Cg~ 38 (72)
.+.||.||.
T Consensus 27 l~~c~~cGe 35 (56)
T 3r8s_0 27 LSVDKTSGE 35 (56)
T ss_dssp EEECTTTCC
T ss_pred eeECCCCCC
Confidence 578999996
No 88
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=25.97 E-value=77 Score=19.13 Aligned_cols=11 Identities=45% Similarity=1.174 Sum_probs=8.9
Q ss_pred ceeeCCCCCCC
Q psy8689 29 TEEKCPKCEHP 39 (72)
Q Consensus 29 t~~~Cp~Cg~~ 39 (72)
++..||.|++.
T Consensus 31 M~~~CP~Cq~e 41 (101)
T 2jne_A 31 MELHCPQCQHV 41 (101)
T ss_dssp CCCBCSSSCSB
T ss_pred ccccCccCCCc
Confidence 56789999876
No 89
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.95 E-value=35 Score=14.39 Aligned_cols=11 Identities=36% Similarity=0.987 Sum_probs=6.2
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 10 ~~C~~--C~k~f~ 20 (36)
T 2elt_A 10 YKCPQ--CSYASA 20 (36)
T ss_dssp EECSS--SSCEES
T ss_pred CCCCC--CCcccC
Confidence 55655 666553
No 90
>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*
Probab=25.02 E-value=31 Score=21.25 Aligned_cols=16 Identities=19% Similarity=0.596 Sum_probs=11.3
Q ss_pred ceEEEEecCCCCCcee
Q psy8689 55 MTTFYKCCNIKCGFRW 70 (72)
Q Consensus 55 mTlfy~C~~~~Cg~~w 70 (72)
..-...|.++.||+.|
T Consensus 56 ~~g~I~C~~~~Cg~~W 71 (121)
T 3lrr_A 56 KRAKIFCARQNCSHDW 71 (121)
T ss_dssp EEEEEEECSTTTCCEE
T ss_pred CCcEEEeCccccChhh
Confidence 3455679844499999
No 91
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=24.74 E-value=41 Score=20.53 Aligned_cols=16 Identities=25% Similarity=0.686 Sum_probs=12.1
Q ss_pred ceeeCCCCCCCceEEE
Q psy8689 29 TEEKCPKCEHPRAYFM 44 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~ 44 (72)
+-.+||+||....+..
T Consensus 51 mhakcprcgaegsvsi 66 (131)
T 2x5c_A 51 MHAKCPRCGAEGSVSI 66 (131)
T ss_dssp CEEECTTTSCEEEEEE
T ss_pred eeccCCCCCCccceEE
Confidence 3579999998776654
No 92
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.64 E-value=36 Score=14.45 Aligned_cols=10 Identities=20% Similarity=0.750 Sum_probs=5.7
Q ss_pred EEecCCCCCcee
Q psy8689 59 YKCCNIKCGFRW 70 (72)
Q Consensus 59 y~C~~~~Cg~~w 70 (72)
|.|.. |+..|
T Consensus 10 ~~C~~--C~k~f 19 (36)
T 2els_A 10 FTCEY--CNKVF 19 (36)
T ss_dssp EECTT--TCCEE
T ss_pred EECCC--CCcee
Confidence 55655 66555
No 93
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=24.62 E-value=17 Score=23.87 Aligned_cols=14 Identities=50% Similarity=1.106 Sum_probs=9.5
Q ss_pred eeCCCCCCCceEEE
Q psy8689 31 EKCPKCEHPRAYFM 44 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~ 44 (72)
..||.||+....|.
T Consensus 187 ~~CP~C~~~k~~F~ 200 (202)
T 1yuz_A 187 EKCPICFRPKDTFT 200 (202)
T ss_dssp SBCTTTCCBGGGCE
T ss_pred CCCCCCCCChHHhe
Confidence 56888877766553
No 94
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*
Probab=24.60 E-value=45 Score=22.57 Aligned_cols=15 Identities=27% Similarity=0.570 Sum_probs=10.2
Q ss_pred ccCCcceeeCCCCCC
Q psy8689 24 ENVDTTEEKCPKCEH 38 (72)
Q Consensus 24 ~~~~~t~~~Cp~Cg~ 38 (72)
+...+.++.||+|..
T Consensus 128 pg~~~VKlyCP~C~D 142 (215)
T 4dgl_A 128 PGEAMVKLYCPKCMD 142 (215)
T ss_dssp TTSCBEEEECTTTCC
T ss_pred CCccceeEeCCCccc
Confidence 444556788999873
No 95
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=24.49 E-value=43 Score=14.50 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=7.2
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|..+.|+..|.
T Consensus 9 ~~C~~~~C~k~f~ 21 (37)
T 1va1_A 9 HICHIQGCGKVYG 21 (37)
T ss_dssp EECCSTTCCCEES
T ss_pred CCCCCCCCCCccC
Confidence 5665223776664
No 96
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=24.09 E-value=35 Score=16.07 Aligned_cols=11 Identities=45% Similarity=1.186 Sum_probs=7.2
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 8 ~~C~~--C~k~F~ 18 (48)
T 3iuf_A 8 YACDI--CGKRYK 18 (48)
T ss_dssp EECTT--TCCEES
T ss_pred EECCC--cCcccC
Confidence 66766 777664
No 97
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.02 E-value=18 Score=21.97 Aligned_cols=10 Identities=40% Similarity=1.202 Sum_probs=6.1
Q ss_pred EEecCCCCCcee
Q psy8689 59 YKCCNIKCGFRW 70 (72)
Q Consensus 59 y~C~~~~Cg~~w 70 (72)
|.|.+ ||+.|
T Consensus 68 ~~C~~--CG~~F 77 (105)
T 2gmg_A 68 AQCRK--CGFVF 77 (105)
T ss_dssp CBBTT--TCCBC
T ss_pred cChhh--CcCee
Confidence 55666 66665
No 98
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=23.72 E-value=51 Score=17.40 Aligned_cols=28 Identities=25% Similarity=0.720 Sum_probs=17.4
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
..||.|.+.=. + . + -..+|.++.|++.|
T Consensus 11 L~CP~c~~~L~-~-~-------~---~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLE-E-R-------D---AELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEE-E-E-------T---TEEEECSSSCCCEE
T ss_pred eeCCCCCCcce-e-c-------C---CEEEcCCcCCCcEE
Confidence 58999998522 1 1 1 23568844598876
No 99
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=22.71 E-value=42 Score=14.73 Aligned_cols=11 Identities=36% Similarity=1.026 Sum_probs=6.7
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 12 ~~C~~--C~k~f~ 22 (42)
T 2epc_A 12 YLCGQ--CGKSFT 22 (42)
T ss_dssp EECSS--SCCEES
T ss_pred eECCC--CCcccC
Confidence 56665 766653
No 100
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=22.68 E-value=18 Score=14.36 Aligned_cols=10 Identities=20% Similarity=0.663 Sum_probs=4.7
Q ss_pred EEecCCCCCcee
Q psy8689 59 YKCCNIKCGFRW 70 (72)
Q Consensus 59 y~C~~~~Cg~~w 70 (72)
|.|.. |+..|
T Consensus 3 ~~C~~--C~~~f 12 (29)
T 1ard_A 3 FVCEV--CTRAF 12 (29)
T ss_dssp CBCTT--TCCBC
T ss_pred eECCC--CCccc
Confidence 34544 55544
No 101
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=21.94 E-value=67 Score=21.77 Aligned_cols=30 Identities=30% Similarity=0.432 Sum_probs=18.8
Q ss_pred ceeeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCc
Q psy8689 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68 (72)
Q Consensus 29 t~~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~ 68 (72)
....||.||..=..-.+.+ | ++ |.|-. |..
T Consensus 241 ~G~pC~~CG~~I~~~~~~g-R------~t-~~CP~--CQ~ 270 (271)
T 2xzf_A 241 TGEKCSRCGAEIQKIKVAG-R------GT-HFCPV--CQQ 270 (271)
T ss_dssp TTSBCTTTCCBCEEEEETT-E------EE-EECTT--TSC
T ss_pred CCCCCCCCCCEeeEEEECC-C------ce-EECCC--CCC
Confidence 3468999998766554432 3 33 44855 865
No 102
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=21.84 E-value=43 Score=14.57 Aligned_cols=11 Identities=36% Similarity=0.978 Sum_probs=6.2
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 7 ~~C~~--C~k~f~ 17 (39)
T 1njq_A 7 YTCSF--CKREFR 17 (39)
T ss_dssp EECTT--TCCEES
T ss_pred eECCC--CCcccC
Confidence 55655 666553
No 103
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=21.61 E-value=48 Score=18.28 Aligned_cols=28 Identities=18% Similarity=0.428 Sum_probs=16.6
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
..||.|++.-.+- . + .-..+|.. ||..|
T Consensus 9 L~CP~ck~~L~~~-~------~---~~~LiC~~--cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFD-K------S---KDELICKG--DRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEE-T------T---TTEEEETT--TTEEE
T ss_pred eECCCCCCcCeEe-C------C---CCEEEcCC--CCcEe
Confidence 5799999753321 1 1 12356877 88765
No 104
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.45 E-value=44 Score=14.70 Aligned_cols=11 Identities=55% Similarity=1.274 Sum_probs=6.6
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 12 ~~C~~--C~k~f~ 22 (42)
T 2en2_A 12 YKCET--CGARFV 22 (42)
T ss_dssp EECTT--TCCEES
T ss_pred EeCCC--cChhhC
Confidence 56655 666653
No 105
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=21.39 E-value=46 Score=18.45 Aligned_cols=28 Identities=25% Similarity=0.482 Sum_probs=16.6
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
..||.|++.-. | . + + .-..+|.. ||..|
T Consensus 9 L~CP~ck~~L~-~-~---~--~---~~~LiC~~--cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLE-F-Q---R--A---QAELVCNA--DRLAF 36 (70)
T ss_dssp CBCTTTCCBEE-E-E---T--T---TTEEEETT--TTEEE
T ss_pred eECCCCCCcCE-E-e---C--C---CCEEEcCC--CCcee
Confidence 57999998433 2 1 0 1 12356877 88765
No 106
>2czr_A TBP-interacting protein; tata-binding protein (TBP), hyperthermophilic archaeon, Zn-finger motif, transcription; 2.30A {Thermococcus kodakarensis} SCOP: c.52.4.1
Probab=21.24 E-value=55 Score=22.20 Aligned_cols=17 Identities=47% Similarity=0.903 Sum_probs=13.0
Q ss_pred CCceEEEEeeccCCCCCceEEEEecCCCCCc
Q psy8689 38 HPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68 (72)
Q Consensus 38 ~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~ 68 (72)
...-+||| ||.|.. ||.
T Consensus 146 GqDyvFWQ------------FYKCe~--CgK 162 (226)
T 2czr_A 146 GQDYIFWQ------------FYKCEE--CGK 162 (226)
T ss_dssp TTTEEEEE------------EEECTT--TCC
T ss_pred CcceEEEE------------EEehhh--cCc
Confidence 44567877 999988 985
No 107
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=21.24 E-value=61 Score=17.46 Aligned_cols=9 Identities=33% Similarity=0.995 Sum_probs=7.0
Q ss_pred eeeCCCCCC
Q psy8689 30 EEKCPKCEH 38 (72)
Q Consensus 30 ~~~Cp~Cg~ 38 (72)
.+.||.||.
T Consensus 30 l~~c~~cGe 38 (60)
T 3v2d_5 30 LVPCPECKA 38 (60)
T ss_dssp CEECTTTCC
T ss_pred eeECCCCCC
Confidence 467888886
No 108
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.13 E-value=47 Score=14.96 Aligned_cols=11 Identities=36% Similarity=1.059 Sum_probs=6.5
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 13 ~~C~~--C~k~F~ 23 (44)
T 2epv_A 13 YECNE--CGKAFI 23 (44)
T ss_dssp EECSS--SCCEES
T ss_pred eECCC--CCcccC
Confidence 56655 666653
No 109
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=20.88 E-value=30 Score=16.30 Aligned_cols=11 Identities=27% Similarity=1.050 Sum_probs=6.8
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. ||..|.
T Consensus 9 ~~C~~--CgK~F~ 19 (36)
T 1fv5_A 9 FMCLP--CGIAFS 19 (36)
T ss_dssp CEETT--TTEECS
T ss_pred eECCC--CCCccC
Confidence 56665 776654
No 110
>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*
Probab=20.88 E-value=9.2 Score=19.57 Aligned_cols=31 Identities=19% Similarity=0.456 Sum_probs=20.2
Q ss_pred eCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCceec
Q psy8689 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71 (72)
Q Consensus 32 ~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w~ 71 (72)
.|..|+-...-.|+ +..++. +.|.. ||-.|+
T Consensus 3 ~C~~C~tt~Tp~WR----~gp~G~---~LCNa--CGl~~k 33 (43)
T 2vut_I 3 TCTNCFTQTTPLWR----RNPEGQ---PLCNA--CGLFLK 33 (43)
T ss_dssp CCSSSCCCCCSCCE----ECTTSC---EECHH--HHHHHH
T ss_pred cCCccCCCCCCccc----cCCCCC---cccHH--HHHHHH
Confidence 58889887765544 334443 57887 887664
No 111
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=20.78 E-value=48 Score=14.55 Aligned_cols=11 Identities=36% Similarity=1.198 Sum_probs=6.4
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 11 ~~C~~--C~k~f~ 21 (42)
T 2el5_A 11 YECSE--CGKAFN 21 (42)
T ss_dssp EECSS--SCCEES
T ss_pred ccCCC--cChhhC
Confidence 55655 666553
No 112
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=20.63 E-value=52 Score=18.12 Aligned_cols=28 Identities=14% Similarity=0.259 Sum_probs=16.6
Q ss_pred eeCCCCCCCceEEEEeeccCCCCCceEEEEecCCCCCcee
Q psy8689 31 EKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70 (72)
Q Consensus 31 ~~Cp~Cg~~~a~~~q~Q~rsadE~mTlfy~C~~~~Cg~~w 70 (72)
..||.|++.-.+ . + ++ -..+|.. ||..|
T Consensus 9 L~CP~ck~~L~~--~---~--~~---~~LiC~~--cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEY--H---Q--DK---QELWSRQ--AKLAY 36 (68)
T ss_dssp CBCSSSCCBCEE--E---T--TT---TEEEETT--TTEEE
T ss_pred eECCCCCCcCeE--e---C--CC---CEEEcCC--CCcEe
Confidence 579999975332 1 1 11 2356877 88765
No 113
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=20.16 E-value=51 Score=14.93 Aligned_cols=11 Identities=27% Similarity=1.126 Sum_probs=6.6
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 13 ~~C~~--C~k~F~ 23 (46)
T 2emj_A 13 FECAE--CGKSFS 23 (46)
T ss_dssp EECSS--SSCEES
T ss_pred EECCC--CCcccC
Confidence 56655 666653
No 114
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.13 E-value=50 Score=14.95 Aligned_cols=11 Identities=27% Similarity=0.890 Sum_probs=6.8
Q ss_pred EEecCCCCCceec
Q psy8689 59 YKCCNIKCGFRWR 71 (72)
Q Consensus 59 y~C~~~~Cg~~w~ 71 (72)
|.|.. |+..|.
T Consensus 13 ~~C~~--C~k~f~ 23 (46)
T 2eoy_A 13 FKCNK--CEKTFS 23 (46)
T ss_dssp EECSS--SCCEES
T ss_pred EECcC--CCCcCC
Confidence 56665 766653
No 115
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.06 E-value=50 Score=17.40 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=6.5
Q ss_pred eeeCCCCCCC
Q psy8689 30 EEKCPKCEHP 39 (72)
Q Consensus 30 ~~~Cp~Cg~~ 39 (72)
...||+||..
T Consensus 14 k~iCpkC~a~ 23 (51)
T 3j21_g 14 KYVCLRCGAT 23 (51)
T ss_dssp EEECTTTCCE
T ss_pred CccCCCCCCc
Confidence 3567777765
Done!