Your job contains 1 sequence.
>psy8689
MRCGRLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYK
CCNIKCGFRWRE
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8689
(72 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-040718-291 - symbol:polr3k "polymerase (RNA... 314 3.9e-28 1
UNIPROTKB|E2QZU0 - symbol:POLR3K "DNA-directed RNA polyme... 311 8.2e-28 1
UNIPROTKB|Q9Y2Y1 - symbol:POLR3K "DNA-directed RNA polyme... 311 8.2e-28 1
UNIPROTKB|F1N3E8 - symbol:POLR3K "DNA-directed RNA polyme... 310 1.0e-27 1
UNIPROTKB|F2Z4X7 - symbol:POLR3K "DNA-directed RNA polyme... 310 1.0e-27 1
MGI|MGI:1914255 - symbol:Polr3k "polymerase (RNA) III (DN... 310 1.0e-27 1
UNIPROTKB|Q5FVH1 - symbol:Polr3k "DNA-directed RNA polyme... 310 1.0e-27 1
UNIPROTKB|Q2M2S7 - symbol:POLR3K "DNA-directed RNA polyme... 298 1.9e-26 1
FB|FBgn0061362 - symbol:CG33785 species:7227 "Drosophila ... 278 2.6e-24 1
UNIPROTKB|E1C6D4 - symbol:POLR3K "DNA-directed RNA polyme... 235 9.2e-20 1
WB|WBGene00022309 - symbol:rpc-11 species:6239 "Caenorhab... 224 1.4e-18 1
CGD|CAL0004345 - symbol:RPC11 species:5476 "Candida albic... 221 2.8e-18 1
SGD|S000002452 - symbol:RPC11 "RNA polymerase III subunit... 204 1.8e-16 1
POMBASE|SPAC22A12.05 - symbol:rpc11 "DNA-directed RNA pol... 188 8.8e-15 1
UNIPROTKB|G5EHE0 - symbol:MGCH7_ch7g875 "DNA-directed RNA... 174 2.7e-13 1
TAIR|locus:2120527 - symbol:AT4G07950 species:3702 "Arabi... 146 2.5e-10 1
TAIR|locus:2035322 - symbol:AT1G01210 species:3702 "Arabi... 145 3.2e-10 1
GENEDB_PFALCIPARUM|PFB0290c - symbol:PFB0290c "transcript... 141 8.4e-10 1
UNIPROTKB|O96159 - symbol:PFB0290c "DNA-directed RNA poly... 141 8.4e-10 1
DICTYBASE|DDB_G0278241 - symbol:tcea1 "RNA polymerase II ... 142 2.5e-09 1
FB|FBgn0004855 - symbol:RpII15 "RNA polymerase II 15kD su... 132 7.6e-09 1
DICTYBASE|DDB_G0287707 - symbol:rpc11 "RNA polymerase III... 126 3.3e-08 1
TAIR|locus:2086042 - symbol:NRPB9A species:3702 "Arabidop... 123 6.8e-08 1
DICTYBASE|DDB_G0278263 - symbol:rpa12 "RNA polymerase I s... 125 1.9e-07 1
FB|FBgn0010422 - symbol:TfIIS "RNA polymerase II elongati... 124 2.3e-07 1
CGD|CAL0002729 - symbol:orf19.4537 species:5476 "Candida ... 123 2.8e-07 1
CGD|CAL0006382 - symbol:RPA12 species:5476 "Candida albic... 117 2.9e-07 1
TAIR|locus:505006478 - symbol:NRPB9B species:3702 "Arabid... 117 2.9e-07 1
UNIPROTKB|B7Z4S1 - symbol:TCEA1 "Transcription elongation... 116 3.8e-07 1
POMBASE|SPAC20H4.03c - symbol:tfs1 "transcription elongat... 120 5.5e-07 1
WB|WBGene00022400 - symbol:rpb-9 species:6239 "Caenorhabd... 111 1.3e-06 1
MGI|MGI:1196908 - symbol:Tcea3 "transcription elongation ... 118 1.3e-06 1
RGD|1311369 - symbol:Tcea3 "transcription elongation fact... 118 1.3e-06 1
ZFIN|ZDB-GENE-030131-8049 - symbol:tcea1 "transcription e... 117 1.3e-06 1
UNIPROTKB|F1NP37 - symbol:TCEA1 "Uncharacterized protein"... 116 1.4e-06 1
UNIPROTKB|F1MIT2 - symbol:TCEA1 "Transcription elongation... 116 1.4e-06 1
UNIPROTKB|F1RSG8 - symbol:TCEA1 "Uncharacterized protein"... 116 1.6e-06 1
UNIPROTKB|Q29RL9 - symbol:TCEA1 "Transcription elongation... 116 1.6e-06 1
UNIPROTKB|E2QVN6 - symbol:TCEA1 "Uncharacterized protein"... 116 1.6e-06 1
UNIPROTKB|P23193 - symbol:TCEA1 "Transcription elongation... 116 1.6e-06 1
MGI|MGI:1196624 - symbol:Tcea1 "transcription elongation ... 116 1.6e-06 1
RGD|1309880 - symbol:Tcea1 "transcription elongation fact... 116 1.6e-06 1
UNIPROTKB|E2RIY6 - symbol:TCEA3 "Uncharacterized protein"... 117 1.7e-06 1
UNIPROTKB|O75764 - symbol:TCEA3 "Transcription elongation... 117 1.7e-06 1
UNIPROTKB|Q2KI09 - symbol:TCEA3 "Transcription elongation... 117 1.7e-06 1
UNIPROTKB|F1NP36 - symbol:TCEA1 "Uncharacterized protein"... 116 1.7e-06 1
FB|FBgn0038903 - symbol:RpI12 "RpI12" species:7227 "Droso... 109 2.1e-06 1
ZFIN|ZDB-GENE-041010-106 - symbol:polr2i "polymerase (RNA... 109 2.1e-06 1
ZFIN|ZDB-GENE-040426-985 - symbol:tcea2 "transcription el... 115 2.1e-06 1
WB|WBGene00012000 - symbol:T24H10.1 species:6239 "Caenorh... 115 2.2e-06 1
TAIR|locus:2064195 - symbol:TFIIS "transcript elongation ... 116 2.5e-06 1
POMBASE|SPCC1259.03 - symbol:rpa12 "DNA-directed RNA poly... 108 2.6e-06 1
ASPGD|ASPL0000075205 - symbol:AN4861 species:162425 "Emer... 114 2.7e-06 1
ZFIN|ZDB-GENE-040426-1860 - symbol:tcea3 "transcription e... 116 2.8e-06 1
UNIPROTKB|D4A6D1 - symbol:Tcea2 "Transcription elongation... 112 3.6e-06 1
TAIR|locus:2092185 - symbol:AT3G25940 species:3702 "Arabi... 106 4.3e-06 1
UNIPROTKB|Q15560 - symbol:TCEA2 "Transcription elongation... 112 4.4e-06 1
MGI|MGI:107368 - symbol:Tcea2 "transcription elongation f... 112 4.4e-06 1
RGD|61825 - symbol:Tcea2 "transcription elongation factor... 112 4.4e-06 1
UNIPROTKB|Q63799 - symbol:Tcea2 "Transcription elongation... 112 4.4e-06 1
UNIPROTKB|Q148K0 - symbol:TCEA2 "Transcription elongation... 112 4.4e-06 1
UNIPROTKB|G1K224 - symbol:TCEA2 "Transcription elongation... 112 4.5e-06 1
SGD|S000003011 - symbol:DST1 "General transcription elong... 112 4.7e-06 1
UNIPROTKB|F1PPX8 - symbol:TCEA2 "Uncharacterized protein"... 110 6.1e-06 1
SGD|S000003824 - symbol:RPA12 "RNA polymerase I subunit A... 104 7.0e-06 1
ASPGD|ASPL0000068730 - symbol:AN10970 species:162425 "Eme... 102 1.1e-05 1
GENEDB_PFALCIPARUM|PF07_0057 - symbol:PF07_0057 "transcri... 109 1.6e-05 1
UNIPROTKB|Q8IBV2 - symbol:PF07_0057 "Transcription elonga... 109 1.6e-05 1
WB|WBGene00007616 - symbol:rpoa-12 species:6239 "Caenorha... 98 3.0e-05 1
UNIPROTKB|H9L0B5 - symbol:POLR2I "DNA-directed RNA polyme... 97 3.9e-05 1
UNIPROTKB|F1MZ35 - symbol:POLR2I "DNA-directed RNA polyme... 97 3.9e-05 1
UNIPROTKB|Q32P73 - symbol:POLR2I "DNA-directed RNA polyme... 97 3.9e-05 1
UNIPROTKB|E2QYJ4 - symbol:POLR2I "DNA-directed RNA polyme... 97 3.9e-05 1
UNIPROTKB|P36954 - symbol:POLR2I "DNA-directed RNA polyme... 97 3.9e-05 1
UNIPROTKB|P60899 - symbol:POLR2I "DNA-directed RNA polyme... 97 3.9e-05 1
MGI|MGI:1917170 - symbol:Polr2i "polymerase (RNA) II (DNA... 97 3.9e-05 1
RGD|1309395 - symbol:Polr2i "polymerase (RNA) II (DNA dir... 97 3.9e-05 1
UNIPROTKB|F1N0P7 - symbol:TCEA3 "Transcription elongation... 101 9.3e-05 1
UNIPROTKB|Q9P1U0 - symbol:ZNRD1 "DNA-directed RNA polymer... 92 0.00013 1
UNIPROTKB|B6ICU4 - symbol:ZNRD1 "DNA-directed RNA polymer... 92 0.00013 1
MGI|MGI:1913386 - symbol:Znrd1 "zinc ribbon domain contai... 92 0.00013 1
POMBASE|SPAPYUG7.04c - symbol:rpb9 "DNA-directed RNA poly... 90 0.00021 1
RGD|1303114 - symbol:Znrd1 "zinc ribbon domain containing... 87 0.00045 1
UNIPROTKB|Q1RMP0 - symbol:ZNRD1 "DNA-directed RNA polymer... 84 0.00093 1
UNIPROTKB|G4N0C7 - symbol:MGG_07394 "DNA-directed RNA pol... 84 0.00093 1
>ZFIN|ZDB-GENE-040718-291 [details] [associations]
symbol:polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
ZFIN:ZDB-GENE-040718-291 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:CU463855 EMBL:BC076249
IPI:IPI00483579 RefSeq:NP_001002553.1 UniGene:Dr.132213
STRING:Q6DGU0 Ensembl:ENSDART00000055129 GeneID:436826
KEGG:dre:436826 InParanoid:Q6DGU0 NextBio:20831258 Uniprot:Q6DGU0
Length = 108
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 53/64 (82%), Positives = 59/64 (92%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GG+AAWENVD+T E CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI+CG
Sbjct: 45 KLKEVDDVLGGSAAWENVDSTAEPCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>UNIPROTKB|E2QZU0 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0005634 "nucleus"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761
PROSITE:PS01030 CTD:51728 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:AAEX03004698 RefSeq:XP_854405.2
Ensembl:ENSCAFT00000031350 GeneID:611625 KEGG:cfa:611625
Uniprot:E2QZU0
Length = 108
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>UNIPROTKB|Q9Y2Y1 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0051607
"defense response to virus" evidence=IEA] [GO:0005666 "DNA-directed
RNA polymerase III complex" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0046872
GO:GO:0003677 EMBL:AE006462 GO:GO:0008270 GO:GO:0045087
GO:GO:0051607 Reactome:REACT_1788 GO:GO:0005666 GO:GO:0003899
EMBL:DQ431198 GO:GO:0006386 GO:GO:0006385 EMBL:Z69719
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 CTD:51728
HOGENOM:HOG000228131 HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P
EMBL:AF126531 EMBL:AF051316 EMBL:AF060223 EMBL:BC011932
IPI:IPI00008461 RefSeq:NP_057394.2 UniGene:Hs.632223
ProteinModelPortal:Q9Y2Y1 SMR:Q9Y2Y1 STRING:Q9Y2Y1
PhosphoSite:Q9Y2Y1 DMDM:116242768 PRIDE:Q9Y2Y1 DNASU:51728
Ensembl:ENST00000293860 GeneID:51728 KEGG:hsa:51728 UCSC:uc002cfi.2
GeneCards:GC16M000096 H-InvDB:HIX0012635 HGNC:HGNC:14121
HPA:HPA005891 MIM:606007 neXtProt:NX_Q9Y2Y1 PharmGKB:PA33521
InParanoid:Q9Y2Y1 OMA:ITRKVNN PhylomeDB:Q9Y2Y1 BindingDB:Q9Y2Y1
ChEMBL:CHEMBL2144 ChiTaRS:POLR3K GenomeRNAi:51728 NextBio:55788
Bgee:Q9Y2Y1 CleanEx:HS_POLR3K Genevestigator:Q9Y2Y1
GermOnline:ENSG00000161980 Uniprot:Q9Y2Y1
Length = 108
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAESCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>UNIPROTKB|F1N3E8 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
IPI:IPI00686254 UniGene:Bt.6024 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:DAAA02057271
Ensembl:ENSBTAT00000026386 Uniprot:F1N3E8
Length = 108
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>UNIPROTKB|F2Z4X7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030
KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071 EMBL:FP103025
RefSeq:XP_003124725.1 ProteinModelPortal:F2Z4X7 SMR:F2Z4X7
Ensembl:ENSSSCT00000008733 GeneID:100521261 KEGG:ssc:100521261
Uniprot:F2Z4X7
Length = 108
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>MGI|MGI:1914255 [details] [associations]
symbol:Polr3k "polymerase (RNA) III (DNA directed)
polypeptide K" species:10090 "Mus musculus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 MGI:MGI:1914255 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0003899 UniGene:Mm.271986 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
ChiTaRS:POLR3K EMBL:AK005152 EMBL:AK010875 EMBL:AK021353
EMBL:AK031110 IPI:IPI00133407 RefSeq:NP_080177.1
ProteinModelPortal:Q9CQZ7 SMR:Q9CQZ7 STRING:Q9CQZ7
PhosphoSite:Q9CQZ7 Ensembl:ENSMUST00000039551 GeneID:67005
KEGG:mmu:67005 GeneTree:ENSGT00550000075071 InParanoid:Q9CQZ7
NextBio:323282 Bgee:Q9CQZ7 CleanEx:MM_POLR3K Genevestigator:Q9CQZ7
GermOnline:ENSMUSG00000038628 Uniprot:Q9CQZ7
Length = 108
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>UNIPROTKB|Q5FVH1 [details] [associations]
symbol:Polr3k "DNA-directed RNA polymerase subunit"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 EMBL:CH474066 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:51728 HOGENOM:HOG000228131
HOVERGEN:HBG055716 KO:K03019 OrthoDB:EOG44BB3P OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:BC089990 IPI:IPI00368843
RefSeq:NP_001014281.1 UniGene:Rn.92563 SMR:Q5FVH1 STRING:Q5FVH1
Ensembl:ENSRNOT00000024096 GeneID:366277 KEGG:rno:366277
RGD:1587294 InParanoid:Q5FVH1 NextBio:689123 Genevestigator:Q5FVH1
Uniprot:Q5FVH1
Length = 108
Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
Identities = 52/64 (81%), Positives = 58/64 (90%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D V+GGAAAWENVD+T E CPKCEHPRAYFMQ+QTRSADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDVLGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRSADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>UNIPROTKB|Q2M2S7 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase III subunit
RPC10" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0003899
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 EMBL:BC111667
IPI:IPI00686254 RefSeq:NP_001040082.1 UniGene:Bt.6024
ProteinModelPortal:Q2M2S7 STRING:Q2M2S7 GeneID:618296
KEGG:bta:618296 CTD:51728 HOGENOM:HOG000228131 HOVERGEN:HBG055716
InParanoid:Q2M2S7 KO:K03019 OrthoDB:EOG44BB3P NextBio:20901107
Uniprot:Q2M2S7
Length = 108
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 50/64 (78%), Positives = 56/64 (87%)
Query: 9 KPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGF 68
K KE+D +GGAAAWENVD+T E CPKCEHPRAYFMQ+QTR ADEPMTTFYKCCN +CG
Sbjct: 45 KLKEVDDELGGAAAWENVDSTAEPCPKCEHPRAYFMQLQTRYADEPMTTFYKCCNAQCGH 104
Query: 69 RWRE 72
RWR+
Sbjct: 105 RWRD 108
>FB|FBgn0061362 [details] [associations]
symbol:CG33785 species:7227 "Drosophila melanogaster"
[GO:0006359 "regulation of transcription from RNA polymerase III
promoter" evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 EMBL:AE013599
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 eggNOG:COG0009 InterPro:IPR019761
PROSITE:PS01030 KO:K03019 OMA:ITRKVNN GeneTree:ENSGT00550000075071
RefSeq:NP_001027443.1 UniGene:Dm.1509 ProteinModelPortal:A1ZBX4
SMR:A1ZBX4 IntAct:A1ZBX4 STRING:A1ZBX4 PaxDb:A1ZBX4
EnsemblMetazoa:FBtr0091786 GeneID:3772344 KEGG:dme:Dmel_CG33785
FlyBase:FBgn0061362 InParanoid:A1ZBX4 OrthoDB:EOG4Q2BXV
PhylomeDB:A1ZBX4 NextBio:853393 Uniprot:A1ZBX4
Length = 108
Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
Identities = 46/62 (74%), Positives = 53/62 (85%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
KE+DHV+GG AAWENVD+T+ +CP C H RAYFMQIQTRSADEPMTTFYKCCN +C W
Sbjct: 47 KEVDHVLGGKAAWENVDSTDAECPTCGHKRAYFMQIQTRSADEPMTTFYKCCNHECNHTW 106
Query: 71 RE 72
R+
Sbjct: 107 RD 108
>UNIPROTKB|E1C6D4 [details] [associations]
symbol:POLR3K "DNA-directed RNA polymerase subunit"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
GeneTree:ENSGT00550000075071 OMA:QMQIRSA EMBL:AADN02022352
EMBL:AADN02049227 EMBL:AADN02049228 EMBL:AADN02049229
EMBL:AADN02049230 EMBL:AADN02049231 EMBL:AADN02049232
EMBL:AADN02049233 EMBL:AADN02049234 EMBL:AADN02049235
EMBL:AADN02049236 EMBL:AADN02049237 EMBL:AADN02049238
IPI:IPI00580861 Ensembl:ENSGALT00000028385 Uniprot:E1C6D4
Length = 99
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 41/53 (77%), Positives = 44/53 (83%)
Query: 11 KEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
KE+D V+GGAAAWENVD+T E CPKCEH RAYFMQIQTRS D TFYKCCN
Sbjct: 47 KEVDDVLGGAAAWENVDSTAEPCPKCEHSRAYFMQIQTRSPDSRANTFYKCCN 99
>WB|WBGene00022309 [details] [associations]
symbol:rpc-11 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
GeneTree:ENSGT00550000075071 EMBL:FO081581 HSSP:Q56254
RefSeq:NP_500076.1 ProteinModelPortal:Q9N4B7 SMR:Q9N4B7
IntAct:Q9N4B7 STRING:Q9N4B7 EnsemblMetazoa:Y77E11A.6 GeneID:176950
KEGG:cel:CELE_Y77E11A.6 UCSC:Y77E11A.6 CTD:176950
WormBase:Y77E11A.6 InParanoid:Q9N4B7 NextBio:894706 Uniprot:Q9N4B7
Length = 108
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 38/68 (55%), Positives = 47/68 (69%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
R+ K K+ID V+GG AW N T+E CP C H RAYFMQ+QTRSADEP T FY+C +
Sbjct: 41 RIYPKLKDIDDVLGGPGAWANAQVTDETCPVCSHGRAYFMQLQTRSADEPSTIFYRCADN 100
Query: 65 KCGFRWRE 72
C RW++
Sbjct: 101 ACAHRWKD 108
>CGD|CAL0004345 [details] [associations]
symbol:RPC11 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0006386 "termination of RNA
polymerase III transcription" evidence=IEA] [GO:0042779 "tRNA
3'-trailer cleavage" evidence=IEA] [GO:0042797 "tRNA transcription
from RNA polymerase III promoter" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 CGD:CAL0004345 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 EMBL:AACQ01000059
EMBL:AACQ01000058 GO:GO:0003899 eggNOG:COG1594 KO:K03019
RefSeq:XP_717083.1 RefSeq:XP_717162.1 ProteinModelPortal:Q5A5N9
STRING:Q5A5N9 GeneID:3641239 GeneID:3641326 KEGG:cal:CaO19.12820
KEGG:cal:CaO19.5360 Uniprot:Q5A5N9
Length = 111
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 40/70 (57%), Positives = 49/70 (70%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R K+ KE+D V+GG W+NVD T +CP C +AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLNRKEVDDVLGGEGTWDNVDQTAAQCPIDSCGGDKAYFFQLQIRSADEPMTTFYKC- 101
Query: 63 NIKCGFRWRE 72
+KCG RW+E
Sbjct: 102 -VKCGHRWKE 110
>SGD|S000002452 [details] [associations]
symbol:RPC11 "RNA polymerase III subunit C11" species:4932
"Saccharomyces cerevisiae" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0006386 "termination of RNA polymerase III
transcription" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA;IMP;IDA] [GO:0042797 "tRNA
transcription from RNA polymerase III promoter" evidence=IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
SGD:S000002452 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
EMBL:BK006938 EMBL:Z49209 GO:GO:0005666 GO:GO:0003899
Reactome:REACT_83470 GO:GO:0006386 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 PDB:3QT1 PDBsum:3QT1
Reactome:REACT_87991 GO:GO:0042797 HOGENOM:HOG000228131 KO:K03019
OMA:ITRKVNN GeneTree:ENSGT00550000075071 OrthoDB:EOG469V4B
EMBL:AF108188 EMBL:AY557636 EMBL:AY899253 PIR:S54031
RefSeq:NP_010330.1 ProteinModelPortal:Q04307 SMR:Q04307
DIP:DIP-887N IntAct:Q04307 MINT:MINT-542850 STRING:Q04307
PaxDb:Q04307 PeptideAtlas:Q04307 EnsemblFungi:YDR045C GeneID:851615
KEGG:sce:YDR045C CYGD:YDR045c NextBio:969139 Genevestigator:Q04307
GermOnline:YDR045C Uniprot:Q04307
Length = 110
Score = 204 (76.9 bits), Expect = 1.8e-16, P = 1.8e-16
Identities = 40/71 (56%), Positives = 48/71 (67%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCPK---CEHPRAYFMQIQTRSADEPMTTFYKC 61
R K+ KE+D V+GG W+NVD T+ +CP C AYF Q+Q RSADEPMTTFYKC
Sbjct: 43 RKKLPRKEVDDVLGGG--WDNVDQTKTQCPNYDTCGGESAYFFQLQIRSADEPMTTFYKC 100
Query: 62 CNIKCGFRWRE 72
N CG RW+E
Sbjct: 101 VN--CGHRWKE 109
>POMBASE|SPAC22A12.05 [details] [associations]
symbol:rpc11 "DNA-directed RNA polymerase III complex
subunit Rpc11" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=ISM] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=NAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006384
"transcription initiation from RNA polymerase III promoter"
evidence=TAS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0042779 "tRNA 3'-trailer cleavage" evidence=IGI;IMP]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 PomBase:SPAC22A12.05
GO:GO:0005829 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0005666 GO:GO:0003899
GO:GO:0042779 eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
HOGENOM:HOG000228131 KO:K03019 EMBL:AF027823 EMBL:AF126532
PIR:T38145 RefSeq:NP_593235.1 ProteinModelPortal:O13896
DIP:DIP-29537N STRING:O13896 EnsemblFungi:SPAC22A12.05.1
GeneID:2541521 KEGG:spo:SPAC22A12.05 OMA:HVEGNAL OrthoDB:EOG469V4B
NextBio:20802619 GO:GO:0006384 Uniprot:O13896
Length = 109
Score = 188 (71.2 bits), Expect = 8.8e-15, P = 8.8e-15
Identities = 37/70 (52%), Positives = 48/70 (68%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + KE+D V+GG A+E+ TE C KC++ RAYF Q+Q RSADEPM+TFY+C
Sbjct: 41 RHEFAQKEVDDVLGGEEAFESNQQTEVTCENTKCDNNRAYFFQLQIRSADEPMSTFYRCT 100
Query: 63 NIKCGFRWRE 72
KC F+WRE
Sbjct: 101 --KCKFQWRE 108
>UNIPROTKB|G5EHE0 [details] [associations]
symbol:MGCH7_ch7g875 "DNA-directed RNA polymerase subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
EMBL:CM000230 EMBL:CM001237 GO:GO:0003899 KO:K03019
RefSeq:XP_003720603.1 ProteinModelPortal:G5EHE0
EnsemblFungi:MGG_03072T0 GeneID:2682625 KEGG:mgr:MGG_03072
Uniprot:G5EHE0
Length = 110
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/70 (48%), Positives = 42/70 (60%)
Query: 5 RLKIKPKEIDHVMGGAAAWENVDTTEEKCP--KCEHPRAYFMQIQTRSADEPMTTFYKCC 62
R + KE + V GG AW+N +CP C+ A F Q+Q RSADEPMT+FYKC
Sbjct: 42 RKEFARKEREDVFGGPGAWDNAQKGRVQCPADNCDGEEAAFFQVQIRSADEPMTSFYKC- 100
Query: 63 NIKCGFRWRE 72
+ CG RWRE
Sbjct: 101 -MTCGHRWRE 109
>TAIR|locus:2120527 [details] [associations]
symbol:AT4G07950 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS;IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR006288 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006351 EMBL:AC006266 EMBL:AL161508 GO:GO:0003899
InterPro:IPR019761 PROSITE:PS01030 KO:K03019 HSSP:Q56254
ProtClustDB:CLSN2682844 TIGRFAMs:TIGR01384 EMBL:AY072451
EMBL:BT000318 IPI:IPI00516216 PIR:A85078 RefSeq:NP_192535.1
UniGene:At.33786 ProteinModelPortal:Q9ZQC0 SMR:Q9ZQC0 IntAct:Q9ZQC0
STRING:Q9ZQC0 EnsemblPlants:AT4G07950.1 GeneID:826299
KEGG:ath:AT4G07950 TAIR:At4g07950 InParanoid:Q9ZQC0 OMA:QMQIRSA
PhylomeDB:Q9ZQC0 Genevestigator:Q9ZQC0 Uniprot:Q9ZQC0
Length = 106
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 30/73 (41%), Positives = 44/73 (60%)
Query: 5 RLKIKPKE--IDHVMGGAAAWENVDT---TEEKCPKCEHPRAYFMQIQTRSADEPMTTFY 59
R++IK K+ + + +++ T TE CP+C H +AYF +Q RSADEP + FY
Sbjct: 35 RVEIKKKQLLVKKSIEPVVTKDDIPTAAETEAPCPRCGHDKAYFKSMQIRSADEPESRFY 94
Query: 60 KCCNIKCGFRWRE 72
+C +KC F WRE
Sbjct: 95 RC--LKCEFTWRE 105
>TAIR|locus:2035322 [details] [associations]
symbol:AT1G01210 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=IEA;ISS]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;ISS]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006354 "DNA-dependent transcription, elongation" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR006288
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
EMBL:CP002684 GO:GO:0005634 GO:GO:0006355 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006351
EMBL:AC023628 GO:GO:0003899 eggNOG:COG1594 InterPro:IPR019761
PROSITE:PS01030 HOGENOM:HOG000228131 KO:K03019 HSSP:Q56254
EMBL:BT008558 EMBL:BT008671 EMBL:AK229520 IPI:IPI00532164
PIR:C86142 RefSeq:NP_171629.1 UniGene:At.42660
ProteinModelPortal:Q9LNK0 SMR:Q9LNK0 IntAct:Q9LNK0 STRING:Q9LNK0
EnsemblPlants:AT1G01210.1 GeneID:839481 KEGG:ath:AT1G01210
TAIR:At1g01210 InParanoid:Q9LNK0 OMA:CGYEEAY PhylomeDB:Q9LNK0
ProtClustDB:CLSN2682844 ArrayExpress:Q9LNK0 Genevestigator:Q9LNK0
TIGRFAMs:TIGR01384 Uniprot:Q9LNK0
Length = 106
Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
TE CP+C H +AYF +Q RSADEP + FY+C +KC F WRE
Sbjct: 64 TEAPCPRCGHDKAYFKSMQIRSADEPESRFYRC--LKCEFTWRE 105
>GENEDB_PFALCIPARUM|PFB0290c [details] [associations]
symbol:PFB0290c "transcription factor, putative"
species:5833 "Plasmodium falciparum" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0005666 "DNA-directed RNA polymerase III complex" evidence=ISS]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0008270 GO:GO:0003700 GO:GO:0003676 GO:GO:0006383
EMBL:AE001362 GO:GO:0005666 GO:GO:0003899 HOGENOM:HOG000228131
KO:K03019 OMA:ITRKVNN HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC + AYF +Q RSADEP T FY C +KC + W+E
Sbjct: 60 KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYIC--VKCNYHWKE 106
>UNIPROTKB|O96159 [details] [associations]
symbol:PFB0290c "DNA-directed RNA polymerase subunit"
species:36329 "Plasmodium falciparum 3D7" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=ISS] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 GO:GO:0008270 GO:GO:0003700
GO:GO:0003676 GO:GO:0006383 EMBL:AE001362 GO:GO:0005666
GO:GO:0003899 HOGENOM:HOG000228131 KO:K03019 OMA:ITRKVNN
HSSP:Q56254 PIR:E71618 RefSeq:XP_001349576.1
ProteinModelPortal:O96159 EnsemblProtists:PFB0290c:mRNA
GeneID:812658 KEGG:pfa:PFB0290c EuPathDB:PlasmoDB:PF3D7_0206600
ProtClustDB:CLSZ2432907 Uniprot:O96159
Length = 106
Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+N+ T+ CPKC + AYF +Q RSADEP T FY C +KC + W+E
Sbjct: 60 KNMSKTQAVCPKCTNDEAYFYTLQIRSADEPSTIFYIC--VKCNYHWKE 106
>DICTYBASE|DDB_G0278241 [details] [associations]
symbol:tcea1 "RNA polymerase II elongation factor"
species:44689 "Dictyostelium discoideum" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006368 "transcription elongation from RNA polymerase II
promoter" evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 dictyBase:DDB_G0278241 GO:GO:0005654
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 KO:K03145
RefSeq:XP_642233.1 HSSP:P23193 ProteinModelPortal:Q54YG9 SMR:Q54YG9
STRING:Q54YG9 EnsemblProtists:DDB0216299 GeneID:8621441
KEGG:ddi:DDB_G0278241 OMA:LEIWKKV Uniprot:Q54YG9
Length = 319
Score = 142 (55.0 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 31/69 (44%), Positives = 42/69 (60%)
Query: 6 LKIKPKEIDHVMGGAA--AWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCC 62
LK + K++D A+ N TT++ +C KC+ + + Q+QTRSADEP TTF KCC
Sbjct: 249 LKEERKKLDKFNTEASMLGQNNEATTDQFQCGKCKQRKCTYTQLQTRSADEPPTTFVKCC 308
Query: 63 NIKCGFRWR 71
CG RWR
Sbjct: 309 VKGCGNRWR 317
>FB|FBgn0004855 [details] [associations]
symbol:RpII15 "RNA polymerase II 15kD subunit" species:7227
"Drosophila melanogaster" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS;NAS;IDA] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=ISS;NAS] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=ISS;NAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0007095 "mitotic G2 DNA
damage checkpoint" evidence=IGI] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
EMBL:AE014297 GO:GO:0007095 GO:GO:0007067 GO:GO:0022008
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 eggNOG:COG1594 InterPro:IPR019761
PROSITE:PS01030 KO:K03017 EMBL:S88139 EMBL:S66940 PIR:S39445
RefSeq:NP_001247099.1 RefSeq:NP_731898.1 ProteinModelPortal:P36958
SMR:P36958 IntAct:P36958 STRING:P36958 PaxDb:P36958
EnsemblMetazoa:FBtr0082925 EnsemblMetazoa:FBtr0309995 GeneID:41741
KEGG:dme:Dmel_CG3284 CTD:41741 FlyBase:FBgn0004855
GeneTree:ENSGT00550000075063 InParanoid:P36958 OMA:MHEIDEL
OrthoDB:EOG4D51F3 PhylomeDB:P36958 GenomeRNAi:41741 NextBio:825340
Bgee:P36958 GermOnline:CG3284 Uniprot:P36958
Length = 129
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 25/62 (40%), Positives = 33/62 (53%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ H++ + + TE+ CPKC H A F Q QTR A+E M +Y C N C RW
Sbjct: 68 ELTHIVPDVISDPTLPRTEDHACPKCSHREAVFFQAQTRRAEEEMRLYYVCTNQNCTHRW 127
Query: 71 RE 72
E
Sbjct: 128 TE 129
>DICTYBASE|DDB_G0287707 [details] [associations]
symbol:rpc11 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006383 "transcription from RNA polymerase III promoter"
evidence=ISS] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR001529
InterPro:IPR012164 Pfam:PF02150 PIRSF:PIRSF005586
dictyBase:DDB_G0287707 GO:GO:0003677 GO:GO:0008270
GenomeReviews:CM000154_GR EMBL:AAFI02000104 GO:GO:0006383
GO:GO:0005666 GO:GO:0003899 eggNOG:COG1594 KO:K03019
RefSeq:XP_637000.1 ProteinModelPortal:Q54K02 STRING:Q54K02
EnsemblProtists:DDB0216317 GeneID:8626255 KEGG:ddi:DDB_G0287707
InParanoid:Q54K02 OMA:CPLCANM Uniprot:Q54K02
Length = 111
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 5 RLKIKPKEIDH-VMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCN 63
++ ++ K ID V GG AW++ D E +C C + RA ++IQ +P T++Y+C N
Sbjct: 40 KVPLQRKIIDSDVFGGEEAWKSADVVEVECQVCRYRRASLIEIQVDPIGQPKTSYYRCKN 99
Query: 64 IKCGFRWRE 72
C +W++
Sbjct: 100 PGCENQWQK 108
>TAIR|locus:2086042 [details] [associations]
symbol:NRPB9A species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IPI] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IPI]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 GO:GO:0000419 GO:GO:0005665 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 HOGENOM:HOG000228134 KO:K03017
OMA:MHEIDEL EMBL:BT012109 EMBL:BT012363 IPI:IPI00532819
RefSeq:NP_188323.1 UniGene:At.73939 ProteinModelPortal:Q6NLH0
SMR:Q6NLH0 IntAct:Q6NLH0 STRING:Q6NLH0 PaxDb:Q6NLH0 PRIDE:Q6NLH0
EnsemblPlants:AT3G16980.1 GeneID:820954 KEGG:ath:AT3G16980
TAIR:At3g16980 InParanoid:Q6NLH0 PhylomeDB:Q6NLH0
ProtClustDB:CLSN2684187 Genevestigator:Q6NLH0 Uniprot:Q6NLH0
Length = 114
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 22/45 (48%), Positives = 26/45 (57%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C KC+H A F Q R +E MT F+ CCN CG RWRE
Sbjct: 71 TKAVRCSKCQHREAVFFQATARG-EEGMTLFFVCCNPNCGHRWRE 114
>DICTYBASE|DDB_G0278263 [details] [associations]
symbol:rpa12 "RNA polymerase I subunit" species:44689
"Dictyostelium discoideum" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006360 "transcription from RNA polymerase I promoter"
evidence=ISS] [GO:0005736 "DNA-directed RNA polymerase I complex"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR001222 Pfam:PF01096 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 dictyBase:DDB_G0278263 GenomeReviews:CM000152_GR
EMBL:AAFI02000023 GO:GO:0008270 GO:GO:0003676 GO:GO:0006360
GO:GO:0005736 GO:GO:0003899 eggNOG:COG1594 RefSeq:XP_642247.1
ProteinModelPortal:Q54YF5 PRIDE:Q54YF5 EnsemblProtists:DDB0220615
GeneID:8621456 KEGG:ddi:DDB_G0278263 InParanoid:Q54YF5 OMA:QKDQTPQ
Uniprot:Q54YF5
Length = 324
Score = 125 (49.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 22/41 (53%), Positives = 28/41 (68%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
+EKCP+C H + YF QTRSADE T FY C +KC F++
Sbjct: 282 DEKCPECGHGKMYFKTAQTRSADEGQTIFYDC--VKCSFKF 320
>FB|FBgn0010422 [details] [associations]
symbol:TfIIS "RNA polymerase II elongation factor"
species:7227 "Drosophila melanogaster" [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS;NAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
EMBL:AE014134 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
KO:K03145 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:X53670 EMBL:L26091 EMBL:AY051843
PIR:S55899 RefSeq:NP_476967.1 UniGene:Dm.3045
ProteinModelPortal:P20232 SMR:P20232 DIP:DIP-23586N
MINT:MINT-924728 STRING:P20232 PaxDb:P20232 PRIDE:P20232
EnsemblMetazoa:FBtr0080722 EnsemblMetazoa:FBtr0332475 GeneID:34883
KEGG:dme:Dmel_CG3710 CTD:34883 FlyBase:FBgn0010422
InParanoid:P20232 OrthoDB:EOG4GXD3M PhylomeDB:P20232
GenomeRNAi:34883 NextBio:790684 Bgee:P20232 GermOnline:CG3710
Uniprot:P20232
Length = 313
Score = 124 (48.7 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/67 (41%), Positives = 38/67 (56%)
Query: 7 KIKPKEIDHVMGGA--AAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNI 64
K++ K + + A A + T KC KC+ + Q+QTRSADEPMTTF C N
Sbjct: 247 KLREKFVKEAINDAQLATVQGTKTDLLKCAKCKKRNCTYNQLQTRSADEPMTTFVMC-N- 304
Query: 65 KCGFRWR 71
+CG RW+
Sbjct: 305 ECGNRWK 311
>CGD|CAL0002729 [details] [associations]
symbol:orf19.4537 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0001139 "core RNA polymerase II
recruiting transcription factor activity" evidence=IEA] [GO:0000993
"RNA polymerase II core binding" evidence=IEA] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IEA]
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 CGD:CAL0002729 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
KO:K03145 TIGRFAMs:TIGR01385 EMBL:AACQ01000143 EMBL:AACQ01000140
RefSeq:XP_712868.1 RefSeq:XP_712962.1 ProteinModelPortal:Q59T94
SMR:Q59T94 STRING:Q59T94 GeneID:3645430 GeneID:3645524
KEGG:cal:CaO19.12012 KEGG:cal:CaO19.4537 Uniprot:Q59T94
Length = 305
Score = 123 (48.4 bits), Expect = 2.8e-07, P = 2.8e-07
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+H + + Q+QTRSADEP+TTF C N CG RW+
Sbjct: 267 CGKCKHKKVSYYQMQTRSADEPLTTFCTCEN--CGNRWK 303
>CGD|CAL0006382 [details] [associations]
symbol:RPA12 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=IEA] [GO:0006363 "termination of RNA polymerase I
transcription" evidence=IEA] [GO:0042790 "transcription of nuclear
large rRNA transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
CGD:CAL0006382 GO:GO:0005634 EMBL:AACQ01000095 EMBL:AACQ01000096
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 RefSeq:XP_714814.1
RefSeq:XP_714876.1 ProteinModelPortal:Q59Z13 STRING:Q59Z13
GeneID:3643477 GeneID:3643566 KEGG:cal:CaO19.2287
KEGG:cal:CaO19.9827 Uniprot:Q59Z13
Length = 123
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 22/44 (50%), Positives = 28/44 (63%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCPKC + + +Q RSADE T FY C N CG+R+R
Sbjct: 79 TIKEKCPKCGNEEMQYHTLQLRSADEGATVFYTCTN--CGYRFR 120
>TAIR|locus:505006478 [details] [associations]
symbol:NRPB9B species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA;ISS] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006351 "transcription, DNA-dependent" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000418
"DNA-directed RNA polymerase IV complex" evidence=IPI] [GO:0000419
"DNA-directed RNA polymerase V complex" evidence=IPI] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IPI]
[GO:0080188 "RNA-directed DNA methylation" evidence=IMP]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 GO:GO:0000418 GO:GO:0000419 GO:GO:0005665
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
HOGENOM:HOG000228134 KO:K03017 OMA:RFCRECS GO:GO:0080188
ProtClustDB:CLSN2684187 EMBL:AY084946 EMBL:BT028953 IPI:IPI00540923
RefSeq:NP_567490.1 UniGene:At.33093 ProteinModelPortal:Q8L5V0
SMR:Q8L5V0 STRING:Q8L5V0 PaxDb:Q8L5V0 PRIDE:Q8L5V0
EnsemblPlants:AT4G16265.1 GeneID:827321 KEGG:ath:AT4G16265
TAIR:At4g16265 InParanoid:Q8L5V0 PhylomeDB:Q8L5V0
Genevestigator:Q8L5V0 Uniprot:Q8L5V0
Length = 114
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/45 (46%), Positives = 25/45 (55%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T +C KC+H A F Q R +E MT F+ CCN C RWRE
Sbjct: 71 TKAVRCAKCQHGEAVFFQATARG-EEGMTLFFVCCNPNCSHRWRE 114
>UNIPROTKB|B7Z4S1 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] InterPro:IPR001222 InterPro:IPR017923 Pfam:PF01096
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003746
Gene3D:1.20.930.10 SUPFAM:SSF47676 EMBL:AC100821 UniGene:Hs.491745
HGNC:HGNC:11612 EMBL:AK297729 IPI:IPI00922871 SMR:B7Z4S1
STRING:B7Z4S1 Ensembl:ENST00000522635 UCSC:uc011ldw.2
Uniprot:B7Z4S1
Length = 117
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 79 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 115
>POMBASE|SPAC20H4.03c [details] [associations]
symbol:tfs1 "transcription elongation factor TFIIS"
species:4896 "Schizosaccharomyces pombe" [GO:0000991 "core RNA
polymerase II binding transcription factor activity" evidence=IC]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=ISO] [GO:0006379 "mRNA
cleavage" evidence=ISO] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 PomBase:SPAC20H4.03c
GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006368
GO:GO:0000991 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006379
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EMBL:U20526 PIR:S63845 RefSeq:NP_593623.1 ProteinModelPortal:P49373
SMR:P49373 STRING:P49373 EnsemblFungi:SPAC20H4.03c.1 GeneID:2541941
KEGG:spo:SPAC20H4.03c OrthoDB:EOG4CC79J NextBio:20803025
Uniprot:P49373
Length = 293
Score = 120 (47.3 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 26/65 (40%), Positives = 37/65 (56%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
K++ + + H G A + T C KC+ + + Q+QTRSADEPMTTF +C C
Sbjct: 231 KLEQENLFHAQG--AKPQKAVTDLFTCGKCKQKKVSYYQMQTRSADEPMTTFCECT--VC 286
Query: 67 GFRWR 71
G RW+
Sbjct: 287 GNRWK 291
>WB|WBGene00022400 [details] [associations]
symbol:rpb-9 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 Pfam:PF01096 Pfam:PF02150
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006351 GO:GO:0003899
EMBL:FO081378 eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
HOGENOM:HOG000228134 KO:K03017 GeneTree:ENSGT00550000075063
RefSeq:NP_505062.1 HSSP:P27999 ProteinModelPortal:Q965S0 SMR:Q965S0
STRING:Q965S0 PaxDb:Q965S0 EnsemblMetazoa:Y97E10AR.5 GeneID:179178
KEGG:cel:CELE_Y97E10AR.5 UCSC:Y97E10AR.5 CTD:179178
WormBase:Y97E10AR.5 InParanoid:Q965S0 OMA:CPKENIE NextBio:904258
Uniprot:Q965S0
Length = 167
Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 12 EIDHVMGGAAAWENVDTTEE-KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ ++G + TEE +CP C +A F Q QT+ A+E M +Y C + C RW
Sbjct: 106 ELTQIVGDIIHDPTLPKTEEHQCPVCGKSKAVFFQAQTKKAEEEMRLYYVCASQDCQHRW 165
Query: 71 RE 72
E
Sbjct: 166 TE 167
>MGI|MGI:1196908 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 MGI:MGI:1196908
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
EMBL:AL935264 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 OMA:KGLDCSD ChiTaRS:TCEA3 EMBL:D00926
EMBL:AJ223472 EMBL:AK002319 EMBL:AK007437 EMBL:AK019024
EMBL:BC010807 IPI:IPI00137142 RefSeq:NP_035672.1 UniGene:Mm.112
PDB:1WJT PDBsum:1WJT ProteinModelPortal:P23881 SMR:P23881
STRING:P23881 PhosphoSite:P23881 PRIDE:P23881
Ensembl:ENSMUST00000102533 GeneID:21401 KEGG:mmu:21401
UCSC:uc008vhv.2 InParanoid:A2AW46 EvolutionaryTrace:P23881
NextBio:300664 Bgee:P23881 CleanEx:MM_TCEA3 Genevestigator:P23881
GermOnline:ENSMUSG00000001604 Uniprot:P23881
Length = 347
Score = 118 (46.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 308 RCSKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 345
>RGD|1311369 [details] [associations]
symbol:Tcea3 "transcription elongation factor A (SII), 3"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:1311369 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
OrthoDB:EOG4NP741 EMBL:BC091180 IPI:IPI00365276
RefSeq:NP_001015008.1 UniGene:Rn.11547 SMR:Q5BK74
Ensembl:ENSRNOT00000015776 GeneID:298559 KEGG:rno:298559
UCSC:RGD:1311369 InParanoid:Q5BK74 NextBio:643942
Genevestigator:Q5BK74 Uniprot:Q5BK74
Length = 348
Score = 118 (46.6 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 309 RCSKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 346
>ZFIN|ZDB-GENE-030131-8049 [details] [associations]
symbol:tcea1 "transcription elongation factor A
(SII), 1" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-030131-8049 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022
KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AL929271 EMBL:CT955968
EMBL:BC053177 IPI:IPI00500366 RefSeq:NP_956288.1 UniGene:Dr.11529
SMR:Q7T3C1 STRING:Q7T3C1 Ensembl:ENSDART00000101861 GeneID:336105
KEGG:dre:336105 NextBio:20811191 Uniprot:Q7T3C1
Length = 309
Score = 117 (46.2 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 22/39 (56%), Positives = 28/39 (71%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 271 CGKCKKKKCTYTQVQTRSADEPMTTFV-FCN-ECGNRWK 307
>UNIPROTKB|F1NP37 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:AADN02021697 EMBL:AADN02021698
IPI:IPI00575645 Ensembl:ENSGALT00000024654 ArrayExpress:F1NP37
Uniprot:F1NP37
Length = 280
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 278
>UNIPROTKB|F1MIT2 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00510
GO:GO:0005654 GO:GO:0005730 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
IPI:IPI00689567 TIGRFAMs:TIGR01385 OMA:LEIWKKV
GeneTree:ENSGT00390000017794 EMBL:DAAA02038289 EMBL:DAAA02038290
Ensembl:ENSBTAT00000004499 Uniprot:F1MIT2
Length = 280
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 242 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 278
>UNIPROTKB|F1RSG8 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0030218 "erythrocyte
differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 CTD:6917 KO:K03145
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:CU179651 EMBL:CU571052 RefSeq:NP_001230609.1 UniGene:Ssc.1495
Ensembl:ENSSSCT00000006860 GeneID:100157724 KEGG:ssc:100157724
Uniprot:F1RSG8
Length = 300
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 262 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 298
>UNIPROTKB|Q29RL9 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9913 "Bos taurus" [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0030218 "erythrocyte differentiation" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 EMBL:BC114117 IPI:IPI00689567 RefSeq:NP_001039390.1
UniGene:Bt.13876 ProteinModelPortal:Q29RL9 SMR:Q29RL9 STRING:Q29RL9
PRIDE:Q29RL9 GeneID:505722 KEGG:bta:505722 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 InParanoid:Q29RL9 KO:K03145
OrthoDB:EOG4SN1PH NextBio:20867283 TIGRFAMs:TIGR01385
Uniprot:Q29RL9
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 299
>UNIPROTKB|E2QVN6 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005654
GO:GO:0005730 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
OMA:MKNPNLR GeneTree:ENSGT00390000017794 EMBL:AAEX03015788
Ensembl:ENSCAFT00000039344 Uniprot:E2QVN6
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 299
>UNIPROTKB|P23193 [details] [associations]
symbol:TCEA1 "Transcription elongation factor A protein 1"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006368 "transcription elongation from
RNA polymerase II promoter" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0016032 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0030218 GO:GO:0006368 Reactome:REACT_1788 Gene3D:1.10.472.30
SUPFAM:SSF46942 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:X62585 EMBL:X57198
EMBL:M81601 EMBL:X73534 EMBL:AK290454 EMBL:CR542221 EMBL:BT019995
EMBL:AC100821 EMBL:BC072460 IPI:IPI00218106 IPI:IPI00333215
PIR:S17361 PIR:S26831 PIR:S34159 RefSeq:NP_006747.1
RefSeq:NP_958845.1 UniGene:Hs.491745 PDB:1TFI PDB:3NDQ PDBsum:1TFI
PDBsum:3NDQ ProteinModelPortal:P23193 SMR:P23193 DIP:DIP-48480N
IntAct:P23193 STRING:P23193 PhosphoSite:P23193 DMDM:1174652
PaxDb:P23193 PRIDE:P23193 DNASU:6917 Ensembl:ENST00000396401
Ensembl:ENST00000521604 GeneID:6917 KEGG:hsa:6917 UCSC:uc003xru.3
UCSC:uc003xrv.3 GeneCards:GC08M054929 H-InvDB:HIX0057264
HGNC:HGNC:11612 HPA:HPA043786 MIM:601425 neXtProt:NX_P23193
PharmGKB:PA36371 InParanoid:P23193 OMA:MKNPNLR
EvolutionaryTrace:P23193 GenomeRNAi:6917 NextBio:27057
PMAP-CutDB:P23193 ArrayExpress:P23193 Bgee:P23193 CleanEx:HS_TCEA1
Genevestigator:P23193 GermOnline:ENSG00000197214 Uniprot:P23193
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 299
>MGI|MGI:1196624 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IMP] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IDA] [GO:0046872 "metal
ion binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 EMBL:M18209 MGI:MGI:1196624 GO:GO:0005654
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 GO:GO:0030218 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
CTD:6917 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 EMBL:M18210 EMBL:D00925
EMBL:BC006022 EMBL:BC061490 EMBL:BC083127 IPI:IPI00121887
IPI:IPI00224168 PIR:A29950 RefSeq:NP_001153222.1
RefSeq:NP_001153223.1 RefSeq:NP_035671.1 UniGene:Mm.207263
ProteinModelPortal:P10711 SMR:P10711 STRING:P10711
PhosphoSite:P10711 PaxDb:P10711 PRIDE:P10711
Ensembl:ENSMUST00000081551 GeneID:21399 KEGG:mmu:21399
InParanoid:P10711 ChiTaRS:TCEA1 NextBio:300656 Bgee:P10711
CleanEx:MM_TCEA1 Genevestigator:P10711
GermOnline:ENSMUSG00000067869 Uniprot:P10711
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 299
>RGD|1309880 [details] [associations]
symbol:Tcea1 "transcription elongation factor A (SII) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005654
"nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0030218 "erythrocyte differentiation"
evidence=ISO] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:1309880 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 CTD:6917
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 OMA:MKNPNLR EMBL:BC099141 IPI:IPI00358677
RefSeq:NP_001020906.1 RefSeq:XP_002728223.1 RefSeq:XP_003752832.1
UniGene:Rn.205137 UniGene:Rn.6738 ProteinModelPortal:Q4KLL0
SMR:Q4KLL0 STRING:Q4KLL0 PhosphoSite:Q4KLL0 PRIDE:Q4KLL0
Ensembl:ENSRNOT00000010893 GeneID:362479 GeneID:498453
KEGG:rno:362479 KEGG:rno:498453 UCSC:RGD:1309880
GeneTree:ENSGT00390000017794 InParanoid:Q4KLL0 NextBio:680080
Genevestigator:Q4KLL0 GermOnline:ENSRNOG00000005869 Uniprot:Q4KLL0
Length = 301
Score = 116 (45.9 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 263 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 299
>UNIPROTKB|E2RIY6 [details] [associations]
symbol:TCEA3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0003677 GO:GO:0008270 GO:GO:0006357
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:KGLDCSD EMBL:AAEX03001757
Ensembl:ENSCAFT00000021079 Uniprot:E2RIY6
Length = 348
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 346
>UNIPROTKB|O75764 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9606 "Homo sapiens" [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784
"regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 EMBL:AL357134
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 EMBL:AL109936 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385 CTD:6920
OrthoDB:EOG4NP741 EMBL:AK290272 EMBL:BC041613 EMBL:AJ223473
IPI:IPI00178146 RefSeq:NP_003187.1 UniGene:Hs.446354
ProteinModelPortal:O75764 SMR:O75764 IntAct:O75764 STRING:O75764
PhosphoSite:O75764 PaxDb:O75764 PRIDE:O75764 DNASU:6920
Ensembl:ENST00000450454 GeneID:6920 KEGG:hsa:6920 UCSC:uc021oig.1
GeneCards:GC01M023706 HGNC:HGNC:11615 HPA:HPA044960 MIM:604128
neXtProt:NX_O75764 PharmGKB:PA36374 InParanoid:O75764 OMA:KGLDCSD
ChiTaRS:TCEA3 GenomeRNAi:6920 NextBio:27073 ArrayExpress:O75764
Bgee:O75764 CleanEx:HS_TCEA3 Genevestigator:O75764
GermOnline:ENSG00000204219 Uniprot:O75764
Length = 348
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 309 QCSKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 346
>UNIPROTKB|Q2KI09 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 TIGRFAMs:TIGR01385
EMBL:BC112812 IPI:IPI00713590 RefSeq:NP_001039825.1
UniGene:Bt.28947 ProteinModelPortal:Q2KI09 SMR:Q2KI09 PRIDE:Q2KI09
GeneID:533803 KEGG:bta:533803 CTD:6920 InParanoid:Q2KI09
OrthoDB:EOG4NP741 NextBio:20876155 Uniprot:Q2KI09
Length = 349
Score = 117 (46.2 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 310 QCSKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 347
>UNIPROTKB|F1NP36 [details] [associations]
symbol:TCEA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0030218
"erythrocyte differentiation" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005654 GO:GO:0005730 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 OMA:MKNPNLR GeneTree:ENSGT00390000017794
EMBL:AADN02021697 EMBL:AADN02021698 IPI:IPI00598591
Ensembl:ENSGALT00000024655 ArrayExpress:F1NP36 Uniprot:F1NP36
Length = 309
Score = 116 (45.9 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 271 CGKCKKKNCTYTQVQTRSADEPMTTFV-VCN-ECGNRWK 307
>FB|FBgn0038903 [details] [associations]
symbol:RpI12 "RpI12" species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005736 "DNA-directed RNA polymerase I
complex" evidence=ISS;NAS] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=NAS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
EMBL:AE014297 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351
GO:GO:0003676 GO:GO:0003899 eggNOG:COG1594
GeneTree:ENSGT00390000008126 KO:K03000 InterPro:IPR019761
PROSITE:PS01030 EMBL:BT050591 RefSeq:NP_524439.1 UniGene:Dm.16638
SMR:Q9VD81 STRING:Q9VD81 EnsemblMetazoa:FBtr0084166 GeneID:42563
KEGG:dme:Dmel_CG13418 UCSC:CG13418-RA CTD:42563 FlyBase:FBgn0038903
InParanoid:Q9VD81 OMA:GYKETEN OrthoDB:EOG47SQXD GenomeRNAi:42563
NextBio:829443 Uniprot:Q9VD81
Length = 120
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
E KCPKC H + + +Q RSADE T F+ C +KC F+ E
Sbjct: 78 ERKCPKCNHDKMSYATLQLRSADEGQTVFFTC--LKCKFKESE 118
>ZFIN|ZDB-GENE-041010-106 [details] [associations]
symbol:polr2i "polymerase (RNA) II (DNA directed)
polypeptide I" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 SMART:SM00661 ZFIN:ZDB-GENE-041010-106 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006351
GO:GO:0003899 InterPro:IPR019761 PROSITE:PS01030 HOVERGEN:HBG009981
EMBL:BC083411 IPI:IPI00491321 UniGene:Dr.21233
ProteinModelPortal:Q5XJ93 STRING:Q5XJ93 InParanoid:Q5XJ93
ArrayExpress:Q5XJ93 Uniprot:Q5XJ93
Length = 126
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 12 EIDHVMGGAAAWENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E+ ++ A + TE+ CPKC H A F Q + A++ M +Y C CG RW
Sbjct: 65 ELTQIIADVAQDPTLPRTEDHPCPKCGHKEAVFFQSHSMKAEDAMRLYYVCTAPHCGHRW 124
Query: 71 RE 72
E
Sbjct: 125 TE 126
>ZFIN|ZDB-GENE-040426-985 [details] [associations]
symbol:tcea2 "transcription elongation factor A
(SII), 2" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0003746 "translation elongation factor activity"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-985 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:CR457456 EMBL:CT025851
IPI:IPI00495893 Ensembl:ENSDART00000014222 ArrayExpress:F1QTS2
Bgee:F1QTS2 Uniprot:F1QTS2
Length = 301
Score = 115 (45.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 263 CGKCKGKNCTYTQVQTRSADEPMTTFV-LCN-ECGNRWK 299
>WB|WBGene00012000 [details] [associations]
symbol:T24H10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 EMBL:Z54216 PIR:T25250
RefSeq:NP_495941.1 UniGene:Cel.14290 ProteinModelPortal:P52652
SMR:P52652 STRING:P52652 PaxDb:P52652 EnsemblMetazoa:T24H10.1
GeneID:174450 KEGG:cel:CELE_T24H10.1 UCSC:T24H10.1 CTD:174450
WormBase:T24H10.1 InParanoid:P52652 OMA:KTNIGIK NextBio:884086
Uniprot:P52652
Length = 308
Score = 115 (45.5 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 21/40 (52%), Positives = 27/40 (67%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
KC KC + Q+QTRS+DEPMTTF C ++CG RW+
Sbjct: 269 KCGKCGKKNCTYTQLQTRSSDEPMTTFVFC--LECGNRWK 306
>TAIR|locus:2064195 [details] [associations]
symbol:TFIIS "transcript elongation factor IIS"
species:3702 "Arabidopsis thaliana" [GO:0003674
"molecular_function" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0003746 "translation elongation factor
activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IEA;ISS;IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=IEA;ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;ISS]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0009910 "negative
regulation of flower development" evidence=IMP] [GO:0010162 "seed
dormancy process" evidence=RCA;IMP] [GO:0034243 "regulation of
transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000394 "RNA
splicing, via endonucleolytic cleavage and ligation" evidence=RCA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=RCA] [GO:0007062 "sister chromatid cohesion" evidence=RCA]
[GO:0009640 "photomorphogenesis" evidence=RCA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=RCA] [GO:0009845
"seed germination" evidence=IMP;RCA] [GO:0009880 "embryonic pattern
specification" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010072 "primary shoot apical
meristem specification" evidence=RCA] [GO:0010182 "sugar mediated
signaling pathway" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010431 "seed maturation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0045595 "regulation of cell differentiation"
evidence=RCA] [GO:0048366 "leaf development" evidence=RCA]
[GO:0048825 "cotyledon development" evidence=RCA] [GO:0050826
"response to freezing" evidence=RCA] [GO:0051301 "cell division"
evidence=RCA] [GO:0009739 "response to gibberellin stimulus"
evidence=IMP] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 EMBL:CP002685 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 GO:GO:0009739 GO:GO:0009845
GO:GO:0003746 GO:GO:0009910 EMBL:AC005499 GO:GO:0010162
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0034243 Gene3D:1.20.930.10
SUPFAM:SSF47676 KO:K03145 TIGRFAMs:TIGR01385 HSSP:P23193
OMA:LEIWKKV UniGene:At.13130 EMBL:AY150517 EMBL:AK117557
IPI:IPI00532116 PIR:E84806 RefSeq:NP_181390.1
ProteinModelPortal:Q9ZVH8 SMR:Q9ZVH8 IntAct:Q9ZVH8 STRING:Q9ZVH8
PRIDE:Q9ZVH8 EnsemblPlants:AT2G38560.1 GeneID:818438
KEGG:ath:AT2G38560 TAIR:At2g38560 InParanoid:Q9ZVH8
PhylomeDB:Q9ZVH8 ProtClustDB:CLSN2683212 Genevestigator:Q9ZVH8
Uniprot:Q9ZVH8
Length = 378
Score = 116 (45.9 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 26/65 (40%), Positives = 35/65 (53%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
+IK K + G AA T + KC +C + + Q+QTRSADEPMTT+ C N C
Sbjct: 316 QIKEKALFDCERGLAA--KASTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVN--C 371
Query: 67 GFRWR 71
W+
Sbjct: 372 DNHWK 376
>POMBASE|SPCC1259.03 [details] [associations]
symbol:rpa12 "DNA-directed RNA polymerase complex I
subunit Rpa12" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IGI] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006353 "DNA-dependent transcription,
termination" evidence=IGI] [GO:0006360 "transcription from RNA
polymerase I promoter" evidence=IGI] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IGI] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
PomBase:SPCC1259.03 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006360 GO:GO:0005736 GO:GO:0003899 GO:GO:0006353
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 InterPro:IPR019761
PROSITE:PS01030 EMBL:AF219943 EMBL:AB023403 EMBL:AB023817
PIR:T40892 RefSeq:NP_588059.1 ProteinModelPortal:O94703
STRING:O94703 PRIDE:O94703 EnsemblFungi:SPCC1259.03.1
GeneID:2538906 KEGG:spo:SPCC1259.03 OMA:CGNLLES OrthoDB:EOG45QMPS
NextBio:20800084 Uniprot:O94703
Length = 119
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 24 ENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRW 70
E T EEKCPKC + F +Q RSADE T FY+C +C +++
Sbjct: 71 EEAATIEEKCPKCGNDHMTFHTLQLRSADEGSTVFYECP--RCAYKF 115
>ASPGD|ASPL0000075205 [details] [associations]
symbol:AN4861 species:162425 "Emericella nidulans"
[GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IEA]
[GO:0001193 "maintenance of transcriptional fidelity during
DNA-dependent transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0031440 "regulation of mRNA 3'-end
processing" evidence=IEA] [GO:0006362 "transcription elongation
from RNA polymerase I promoter" evidence=IEA] [GO:0031564
"transcription antitermination" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IEA] [GO:0006367 "transcription initiation from RNA
polymerase II promoter" evidence=IEA] [GO:0001139 "core RNA
polymerase II recruiting transcription factor activity"
evidence=IEA] [GO:0000993 "RNA polymerase II core binding"
evidence=IEA] [GO:0001012 "RNA polymerase II regulatory region DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
GO:GO:0003746 EMBL:BN001303 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
HOGENOM:HOG000195015 TIGRFAMs:TIGR01385 OMA:SKWRNEV
EnsemblFungi:CADANIAT00005544 Uniprot:C8V9V9
Length = 304
Score = 114 (45.2 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 26/66 (39%), Positives = 36/66 (54%)
Query: 7 KIKPKEIDHVMGGAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
KI+ + +D M A E +T +C KC + + + QTRSADEPMT F C + C
Sbjct: 243 KIQKENMDKAMVAQA--ERSISTSLQCGKCGQRKVTYTEAQTRSADEPMTLFCTCMH--C 298
Query: 67 GFRWRE 72
G WR+
Sbjct: 299 GKSWRQ 304
>ZFIN|ZDB-GENE-040426-1860 [details] [associations]
symbol:tcea3 "transcription elongation factor A
(SII), 3" species:7955 "Danio rerio" [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006414 "translational elongation" evidence=IEA]
[GO:0003746 "translation elongation factor activity" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
ZFIN:ZDB-GENE-040426-1860 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 GO:GO:0003746 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 CTD:6920
EMBL:CR855299 EMBL:FP102461 EMBL:BC065444 IPI:IPI00496427
RefSeq:NP_991246.1 UniGene:Dr.85211 SMR:Q6P0U5
Ensembl:ENSDART00000006061 GeneID:402983 KEGG:dre:402983
InParanoid:Q6P0U5 NextBio:20816790 Uniprot:Q6P0U5
Length = 409
Score = 116 (45.9 bits), Expect = 2.8e-06, P = 2.8e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTRSADEPMTTF CN +CG RW+
Sbjct: 370 QCGKCKKKNCTYNQVQTRSADEPMTTFV-LCN-ECGNRWK 407
>UNIPROTKB|D4A6D1 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385 IPI:IPI00950445
Ensembl:ENSRNOT00000064494 ArrayExpress:D4A6D1 Uniprot:D4A6D1
Length = 273
Score = 112 (44.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 235 CNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 271
>TAIR|locus:2092185 [details] [associations]
symbol:AT3G25940 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006354 "DNA-dependent transcription, elongation"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AB023041
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899
eggNOG:COG1594 HOGENOM:HOG000228133 KO:K03000 HSSP:P23193
EMBL:AY084292 EMBL:BT024567 IPI:IPI00539114 RefSeq:NP_566786.1
UniGene:At.37301 ProteinModelPortal:Q9LU97 SMR:Q9LU97 IntAct:Q9LU97
STRING:Q9LU97 PaxDb:Q9LU97 PRIDE:Q9LU97 EnsemblPlants:AT3G25940.1
GeneID:822191 KEGG:ath:AT3G25940 TAIR:At3g25940 InParanoid:Q9LU97
OMA:EINKKCE PhylomeDB:Q9LU97 ProtClustDB:CLSN2688785
Genevestigator:Q9LU97 Uniprot:Q9LU97
Length = 119
Score = 106 (42.4 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
++ C KC+HP + QTRSADE TT+Y C N C R+ E
Sbjct: 78 KKACEKCQHPELVYTTRQTRSADEGQTTYYTCPN--CAHRFTE 118
>UNIPROTKB|Q15560 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=NAS] [GO:0006354 "DNA-dependent
transcription, elongation" evidence=NAS] [GO:0008023 "transcription
elongation factor complex" evidence=NAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005813 "centrosome"
evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005813 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 Gene3D:1.10.472.30 SUPFAM:SSF46942
GO:GO:0008023 GO:GO:0006354 Gene3D:1.20.930.10 SUPFAM:SSF47676
GO:GO:0032784 EMBL:AL590548 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 TIGRFAMs:TIGR01385 CTD:6919
EMBL:D50495 EMBL:BC018896 EMBL:U86749 IPI:IPI00018403 PIR:JC4577
RefSeq:NP_003186.1 RefSeq:NP_942016.1 UniGene:Hs.505004
UniGene:Hs.736326 PDB:2LW4 PDBsum:2LW4 ProteinModelPortal:Q15560
SMR:Q15560 IntAct:Q15560 STRING:Q15560 PhosphoSite:Q15560
DMDM:28380177 PaxDb:Q15560 PRIDE:Q15560 DNASU:6919
Ensembl:ENST00000343484 Ensembl:ENST00000361317
Ensembl:ENST00000458442 GeneID:6919 KEGG:hsa:6919 UCSC:uc021wgp.1
GeneCards:GC20P062681 H-InvDB:HIX0174737 HGNC:HGNC:11614
HPA:HPA043836 MIM:604784 neXtProt:NX_Q15560 PharmGKB:PA36373
OMA:AVGADCE GenomeRNAi:6919 NextBio:27067 ArrayExpress:Q15560
Bgee:Q15560 CleanEx:HS_TCEA2 Genevestigator:Q15560
GermOnline:ENSG00000171703 Uniprot:Q15560
Length = 299
Score = 112 (44.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF CN +CG RW+
Sbjct: 261 CGKCRKKNCTYTQVQTRSSDEPMTTFV-VCN-ECGNRWK 297
>MGI|MGI:107368 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003746
"translation elongation factor activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006414 "translational elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 MGI:MGI:107368 GO:GO:0005634 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D86081 EMBL:AB010271
IPI:IPI00284630 PIR:JC5430 RefSeq:NP_033352.1 UniGene:Mm.24245
ProteinModelPortal:Q9QVN7 SMR:Q9QVN7 STRING:Q9QVN7
PhosphoSite:Q9QVN7 PaxDb:Q9QVN7 PRIDE:Q9QVN7
Ensembl:ENSMUST00000103042 GeneID:21400 KEGG:mmu:21400
InParanoid:Q9QVN7 OMA:SKWRNEV NextBio:300660 Bgee:Q9QVN7
CleanEx:MM_TCEA2 Genevestigator:Q9QVN7
GermOnline:ENSMUSG00000059540 Uniprot:Q9QVN7
Length = 299
Score = 112 (44.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297
>RGD|61825 [details] [associations]
symbol:Tcea2 "transcription elongation factor A (SII), 2"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO;TAS]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006357 "regulation
of transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0032784 "regulation
of DNA-dependent transcription, elongation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 RGD:61825 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
eggNOG:COG1594 HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145
OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794
CTD:6919 EMBL:D12927 IPI:IPI00339171 PIR:A53004 RefSeq:NP_476439.1
UniGene:Rn.78891 ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 112 (44.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297
>UNIPROTKB|Q63799 [details] [associations]
symbol:Tcea2 "Transcription elongation factor A protein 2"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] InterPro:IPR001222
InterPro:IPR003617 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 RGD:61825 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0045944
GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594 HOGENOM:HOG000195015
HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 CTD:6919 EMBL:D12927 IPI:IPI00339171
PIR:A53004 RefSeq:NP_476439.1 UniGene:Rn.78891
ProteinModelPortal:Q63799 SMR:Q63799 PRIDE:Q63799
Ensembl:ENSRNOT00000022073 GeneID:29575 KEGG:rno:29575
UCSC:RGD:61825 InParanoid:Q63799 NextBio:609666 ArrayExpress:Q63799
Genevestigator:Q63799 GermOnline:ENSRNOG00000016288 Uniprot:Q63799
Length = 299
Score = 112 (44.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTT Y CN +CG RW+
Sbjct: 261 CNKCRKKNCTYTQVQTRSSDEPMTT-YVVCN-ECGNRWK 297
>UNIPROTKB|Q148K0 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0032784 "regulation of
DNA-dependent transcription, elongation" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006357 "regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319
PROSITE:PS51321 SMART:SM00440 SMART:SM00509 SMART:SM00510
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 eggNOG:COG1594
HOGENOM:HOG000195015 HOVERGEN:HBG055022 KO:K03145 OrthoDB:EOG4SN1PH
TIGRFAMs:TIGR01385 EMBL:BC118232 IPI:IPI00711628
RefSeq:NP_001068797.1 UniGene:Bt.26042 ProteinModelPortal:Q148K0
SMR:Q148K0 STRING:Q148K0 PRIDE:Q148K0 GeneID:507729 KEGG:bta:507729
CTD:6919 InParanoid:Q148K0 NextBio:20868199 Uniprot:Q148K0
Length = 300
Score = 112 (44.5 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF CN +CG RW+
Sbjct: 262 CGKCRKKNCTYTQVQTRSSDEPMTTFV-VCN-ECGNRWK 298
>UNIPROTKB|G1K224 [details] [associations]
symbol:TCEA2 "Transcription elongation factor A protein 2"
species:9913 "Bos taurus" [GO:0005813 "centrosome" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 GO:GO:0005634 GO:GO:0003677 GO:GO:0008270
GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30 SUPFAM:SSF46942
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OMA:AVGADCE EMBL:DAAA02036215
EMBL:DAAA02036214 Ensembl:ENSBTAT00000029107 Uniprot:G1K224
Length = 303
Score = 112 (44.5 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 21/39 (53%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C KC + Q+QTRS+DEPMTTF CN +CG RW+
Sbjct: 265 CGKCRKKNCTYTQVQTRSSDEPMTTFV-VCN-ECGNRWK 301
>SGD|S000003011 [details] [associations]
symbol:DST1 "General transcription elongation factor TFIIS,
enables RNA polymerase" species:4932 "Saccharomyces cerevisiae"
[GO:0000993 "RNA polymerase II core binding" evidence=IPI]
[GO:0042797 "tRNA transcription from RNA polymerase III promoter"
evidence=IMP] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=IMP;IDA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IDA] [GO:0031564 "transcription antitermination"
evidence=IDA] [GO:0045899 "positive regulation of RNA polymerase II
transcriptional preinitiation complex assembly" evidence=IMP;IDA]
[GO:0001139 "core RNA polymerase II recruiting transcription factor
activity" evidence=IMP] [GO:0006367 "transcription initiation from
RNA polymerase II promoter" evidence=IGI;IDA;IMP] [GO:0001012 "RNA
polymerase II regulatory region DNA binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0006379 "mRNA
cleavage" evidence=IDA;IMP] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0001193 "maintenance of transcriptional
fidelity during DNA-dependent transcription elongation from RNA
polymerase II promoter" evidence=IGI;IMP] [GO:0031440 "regulation
of mRNA 3'-end processing" evidence=IGI;IMP] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=IDA]
[GO:0006362 "transcription elongation from RNA polymerase I
promoter" evidence=IDA] InterPro:IPR001222 InterPro:IPR003617
InterPro:IPR003618 InterPro:IPR006289 InterPro:IPR016492
InterPro:IPR017890 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 SMART:SM00509
SMART:SM00510 SGD:S000003011 GO:GO:0005634 EMBL:BK006941
GO:GO:0046872 GO:GO:0008270 GO:GO:0001012 GO:GO:0045899
GO:GO:0032968 Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0006362
GO:GO:0006379 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0031440
GO:GO:0001139 GO:GO:0031564 eggNOG:COG1594 PDB:1PQV PDB:1Y1V
PDB:1Y1Y PDB:3GTM PDB:3PO3 PDBsum:1PQV PDBsum:1Y1V PDBsum:1Y1Y
PDBsum:3GTM PDBsum:3PO3 GO:GO:0042797 GO:GO:0001193
HOGENOM:HOG000195015 KO:K03145 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 OrthoDB:EOG4CC79J EMBL:M36724
EMBL:D12478 EMBL:M60770 EMBL:Z72565 EMBL:X00047 PIR:A42921
RefSeq:NP_011472.1 PDB:1ENW PDB:1EO0 PDBsum:1ENW PDBsum:1EO0
ProteinModelPortal:P07273 SMR:P07273 DIP:DIP-2307N IntAct:P07273
MINT:MINT-1167083 STRING:P07273 PaxDb:P07273 PeptideAtlas:P07273
EnsemblFungi:YGL043W GeneID:852839 KEGG:sce:YGL043W CYGD:YGL043w
OMA:ESEHPPQ EvolutionaryTrace:P07273 NextBio:972417
Genevestigator:P07273 GermOnline:YGL043W Uniprot:P07273
Length = 309
Score = 112 (44.5 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/53 (45%), Positives = 31/53 (58%)
Query: 19 GAAAWENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
GA +V T C KC+ + + Q+QTRSADEP+TTF C CG RW+
Sbjct: 258 GATIERSV-TDRFTCGKCKEKKVSYYQLQTRSADEPLTTFCTC--EACGNRWK 307
>UNIPROTKB|F1PPX8 [details] [associations]
symbol:TCEA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032784 "regulation of DNA-dependent
transcription, elongation" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0006357 "regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003618 InterPro:IPR006289
InterPro:IPR016492 InterPro:IPR017890 InterPro:IPR017923
Pfam:PF01096 Pfam:PF07500 Pfam:PF08711 PIRSF:PIRSF006704
PROSITE:PS00466 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00510 GO:GO:0005634 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 Gene3D:1.10.472.30
SUPFAM:SSF46942 Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784
TIGRFAMs:TIGR01385 GeneTree:ENSGT00390000017794 OMA:AVGADCE
EMBL:AAEX03014175 Ensembl:ENSCAFT00000024122 Uniprot:F1PPX8
Length = 274
Score = 110 (43.8 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 20/39 (51%), Positives = 26/39 (66%)
Query: 33 CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
C +C + Q+QTRS+DEPMTTF CN +CG RW+
Sbjct: 238 CGRCRRKNCTYTQVQTRSSDEPMTTFV-VCN-ECGNRWK 274
>SGD|S000003824 [details] [associations]
symbol:RPA12 "RNA polymerase I subunit A12.2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0042790
"transcription of nuclear large rRNA transcript from RNA polymerase
I promoter" evidence=IGI] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005736 "DNA-directed RNA polymerase
I complex" evidence=IDA] [GO:0006363 "termination of RNA polymerase
I transcription" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 SGD:S000003824
EMBL:BK006943 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 EMBL:L47993
GO:GO:0006363 GO:GO:0005736 GO:GO:0003899 GO:GO:0042790 EMBL:L35564
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 InterPro:IPR019761 PROSITE:PS01030 OrthoDB:EOG45QMPS
EMBL:L00708 EMBL:Z49563 EMBL:AY558313 PIR:A48107 RefSeq:NP_012597.1
ProteinModelPortal:P32529 SMR:P32529 DIP:DIP-236N IntAct:P32529
MINT:MINT-472816 STRING:P32529 PaxDb:P32529 PeptideAtlas:P32529
PRIDE:P32529 EnsemblFungi:YJR063W GeneID:853526 KEGG:sce:YJR063W
CYGD:YJR063w OMA:YHTLQLR NextBio:974215 Genevestigator:P32529
GermOnline:YJR063W Uniprot:P32529
Length = 125
Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
T +EKCP+C + + +Q RSADE T FY C + CG+++R
Sbjct: 81 TIKEKCPQCGNEEMNYHTLQLRSADEGATVFYTCTS--CGYKFR 122
>ASPGD|ASPL0000068730 [details] [associations]
symbol:AN10970 species:162425 "Emericella nidulans"
[GO:0006363 "termination of RNA polymerase I transcription"
evidence=IEA] [GO:0042790 "transcription of nuclear large rRNA
transcript from RNA polymerase I promoter" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005736 "DNA-directed RNA
polymerase I complex" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS51133 SMART:SM00440 GO:GO:0005634
GO:GO:0008270 GO:GO:0006351 GO:GO:0003676 EMBL:BN001304
GO:GO:0003899 HOGENOM:HOG000228133 InterPro:IPR019761
PROSITE:PS01030 OMA:YHTLQLR EnsemblFungi:CADANIAT00000597
Uniprot:C8VBI0
Length = 121
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFR 69
E+ CPKC YF +Q RSADE T FY C CG++
Sbjct: 80 EKDCPKCGRKEMYFTTVQLRSADEGSTVFYTCV---CGYK 116
>GENEDB_PFALCIPARUM|PF07_0057 [details] [associations]
symbol:PF07_0057 "transcription elongation
factor s-ii, putative" species:5833 "Plasmodium falciparum"
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0008023 "transcription elongation
factor complex" evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 363 EFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTC--LKCNNRWK 402
>UNIPROTKB|Q8IBV2 [details] [associations]
symbol:PF07_0057 "Transcription elongation factor s-II,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0006357
"regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0008023 "transcription elongation factor complex"
evidence=ISS] InterPro:IPR001222 InterPro:IPR003618
InterPro:IPR016492 InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500
Pfam:PF08711 PIRSF:PIRSF006704 PROSITE:PS00466 PROSITE:PS51133
PROSITE:PS51319 PROSITE:PS51321 SMART:SM00440 GO:GO:0003677
GO:GO:0008270 GO:GO:0006357 GO:GO:0006351 GO:GO:0003746
Gene3D:1.10.472.30 SUPFAM:SSF46942 GO:GO:0008023 EMBL:AL844506
Gene3D:1.20.930.10 SUPFAM:SSF47676 GO:GO:0032784 KO:K03145
HSSP:P23193 RefSeq:XP_001349051.1 ProteinModelPortal:Q8IBV2
SMR:Q8IBV2 IntAct:Q8IBV2 MINT:MINT-1727622 PRIDE:Q8IBV2
EnsemblProtists:PF07_0057:mRNA GeneID:2655101 KEGG:pfa:PF07_0057
EuPathDB:PlasmoDB:PF3D7_0714500 HOGENOM:HOG000280919 OMA:KIEMAND
ProtClustDB:CLSZ2432728 Uniprot:Q8IBV2
Length = 403
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
E +C KC+ + Q+QTRS+DEPMTTF C +KC RW+
Sbjct: 363 EFQCFKCKGYDTIYHQLQTRSSDEPMTTFVTC--LKCNNRWK 402
>WB|WBGene00007616 [details] [associations]
symbol:rpoa-12 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0009792 "embryo development ending in birth
or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0008270
GO:GO:0000003 GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:Z81035
eggNOG:COG1594 GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
KO:K03000 OMA:YHTLQLR PIR:T19321 RefSeq:NP_506572.1 HSSP:Q56254
ProteinModelPortal:O17587 SMR:O17587 STRING:O17587 PaxDb:O17587
EnsemblMetazoa:C15H11.8.1 EnsemblMetazoa:C15H11.8.2 GeneID:182648
KEGG:cel:CELE_C15H11.8 UCSC:C15H11.8 CTD:182648 WormBase:C15H11.8
InParanoid:O17587 NextBio:918334 Uniprot:O17587
Length = 119
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 20/44 (45%), Positives = 26/44 (59%)
Query: 24 ENVDTTEEK-CPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKC 66
E+ D + C KC H +A + +QTRSADE T FY C +KC
Sbjct: 70 ESADAVVDHICTKCGHSKASYSTMQTRSADEGQTVFYTC--LKC 111
>UNIPROTKB|H9L0B5 [details] [associations]
symbol:POLR2I "DNA-directed RNA polymerase subunit"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529 Pfam:PF01096
Pfam:PF02150 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006351 GO:GO:0003899 GeneTree:ENSGT00550000075063
OMA:MHEIDEL EMBL:AADN02055312 Ensembl:ENSGALT00000022473
Uniprot:H9L0B5
Length = 105
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 61 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 105
>UNIPROTKB|F1MZ35 [details] [associations]
symbol:POLR2I "DNA-directed RNA polymerase subunit"
species:9913 "Bos taurus" [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR001529 InterPro:IPR012164
Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586 PROSITE:PS00466
PROSITE:PS51133 SMART:SM00440 SMART:SM00661 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 GO:GO:0004672 GO:GO:0006366
GO:GO:0003899 GO:GO:0005665 InterPro:IPR019761 PROSITE:PS01030
IPI:IPI00701666 UniGene:Bt.51774 GeneTree:ENSGT00550000075063
OMA:MHEIDEL EMBL:DAAA02046954 ProteinModelPortal:F1MZ35 SMR:F1MZ35
Ensembl:ENSBTAT00000019969 Uniprot:F1MZ35
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UNIPROTKB|Q32P73 [details] [associations]
symbol:POLR2I "DNA-directed RNA polymerase II subunit RPB9"
species:9913 "Bos taurus" [GO:0006468 "protein phosphorylation"
evidence=ISS] [GO:0005665 "DNA-directed RNA polymerase II, core
complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0006468
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 EMBL:BC108233 IPI:IPI00701666
RefSeq:NP_001069797.1 UniGene:Bt.51774 ProteinModelPortal:Q32P73
STRING:Q32P73 GeneID:614472 KEGG:bta:614472 CTD:5438
HOGENOM:HOG000228134 HOVERGEN:HBG009981 InParanoid:Q32P73 KO:K03017
OrthoDB:EOG4XPQH7 NextBio:20899125 Uniprot:Q32P73
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UNIPROTKB|E2QYJ4 [details] [associations]
symbol:POLR2I "DNA-directed RNA polymerase subunit"
species:9615 "Canis lupus familiaris" [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=IEA]
[GO:0004672 "protein kinase activity" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0004672
GO:GO:0006366 GO:GO:0003899 GO:GO:0005665 InterPro:IPR019761
PROSITE:PS01030 CTD:5438 KO:K03017 GeneTree:ENSGT00550000075063
OMA:MHEIDEL EMBL:AAEX03000996 RefSeq:XP_853642.1
ProteinModelPortal:E2QYJ4 SMR:E2QYJ4 Ensembl:ENSCAFT00000010649
GeneID:476476 KEGG:cfa:476476 NextBio:20852127 Uniprot:E2QYJ4
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UNIPROTKB|P36954 [details] [associations]
symbol:POLR2I "DNA-directed RNA polymerase II subunit RPB9"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0004672
"protein kinase activity" evidence=IDA] [GO:0005665 "DNA-directed
RNA polymerase II, core complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IDA;TAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0050434
"positive regulation of viral transcription" evidence=TAS]
[GO:0006468 "protein phosphorylation" evidence=IDA]
Reactome:REACT_216 Reactome:REACT_71 InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 Reactome:REACT_116125 GO:GO:0016032 GO:GO:0046872
GO:GO:0003677 GO:GO:0008270 Reactome:REACT_1675 GO:GO:0006468
GO:GO:0006368 GO:GO:0006367 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006370 GO:GO:0050434 GO:GO:0006283 Reactome:REACT_1892
EMBL:AD001527 GO:GO:0003899 GO:GO:0005665 eggNOG:COG1594
InterPro:IPR019761 PROSITE:PS01030 CTD:5438 HOGENOM:HOG000228134
HOVERGEN:HBG009981 KO:K03017 OrthoDB:EOG4XPQH7 OMA:MHEIDEL
EMBL:Z23102 EMBL:AK312206 EMBL:BC017112 EMBL:BC067794
IPI:IPI00006113 PIR:S41621 RefSeq:NP_006224.1 UniGene:Hs.47062
ProteinModelPortal:P36954 SMR:P36954 DIP:DIP-32917N IntAct:P36954
STRING:P36954 PhosphoSite:P36954 DMDM:548702 PaxDb:P36954
PeptideAtlas:P36954 PRIDE:P36954 DNASU:5438 Ensembl:ENST00000221859
GeneID:5438 KEGG:hsa:5438 UCSC:uc002ode.3 GeneCards:GC19M036604
HGNC:HGNC:9196 HPA:HPA045156 MIM:180662 neXtProt:NX_P36954
PharmGKB:PA33516 InParanoid:P36954 PhylomeDB:P36954 ChiTaRS:POLR2I
GenomeRNAi:5438 NextBio:21041 PMAP-CutDB:P36954 Bgee:P36954
CleanEx:HS_POLR2I Genevestigator:P36954 GermOnline:ENSG00000105258
Uniprot:P36954
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UNIPROTKB|P60899 [details] [associations]
symbol:POLR2I "DNA-directed RNA polymerase II subunit RPB9"
species:9823 "Sus scrofa" [GO:0005665 "DNA-directed RNA polymerase
II, core complex" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0004672 "protein kinase activity" evidence=ISS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISS]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0004672
GO:GO:0006366 EMBL:AJ410870 GO:GO:0003899 GO:GO:0005665
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 CTD:5438
HOGENOM:HOG000228134 HOVERGEN:HBG009981 KO:K03017 OrthoDB:EOG4XPQH7
GeneTree:ENSGT00550000075063 OMA:MHEIDEL RefSeq:NP_001192333.1
UniGene:Ssc.12980 ProteinModelPortal:P60899 SMR:P60899
STRING:P60899 Ensembl:ENSSSCT00000003231 GeneID:414403
KEGG:ssc:414403 Uniprot:P60899
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>MGI|MGI:1917170 [details] [associations]
symbol:Polr2i "polymerase (RNA) II (DNA directed)
polypeptide I" species:10090 "Mus musculus" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005665 "DNA-directed RNA
polymerase II, core complex" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0006468 "protein phosphorylation" evidence=ISO] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
MGI:MGI:1917170 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0004672 GO:GO:0006366 GO:GO:0003899 GO:GO:0005665
eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030 CTD:5438
HOGENOM:HOG000228134 HOVERGEN:HBG009981 KO:K03017 OrthoDB:EOG4XPQH7
GeneTree:ENSGT00550000075063 OMA:MHEIDEL EMBL:BC062812
IPI:IPI00343941 RefSeq:NP_081535.1 UniGene:Mm.440028
ProteinModelPortal:P60898 SMR:P60898 STRING:P60898
PhosphoSite:P60898 PaxDb:P60898 PRIDE:P60898
Ensembl:ENSMUST00000019882 GeneID:69920 KEGG:mmu:69920
UCSC:uc009gdt.1 InParanoid:P60898 NextBio:330611 PMAP-CutDB:P60898
Bgee:P60898 CleanEx:MM_POLR2I Genevestigator:P60898
GermOnline:ENSMUSG00000019738 Uniprot:P60898
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>RGD|1309395 [details] [associations]
symbol:Polr2i "polymerase (RNA) II (DNA directed) polypeptide I"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005665
"DNA-directed RNA polymerase II, core complex" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006468 "protein phosphorylation" evidence=ISO]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0004672 "protein
kinase activity" evidence=ISO] InterPro:IPR001222
InterPro:IPR001529 InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
SMART:SM00661 RGD:1309395 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006351 EMBL:CH473979 GO:GO:0003899
InterPro:IPR019761 PROSITE:PS01030 CTD:5438 KO:K03017
OrthoDB:EOG4XPQH7 GeneTree:ENSGT00550000075063 OMA:MHEIDEL
IPI:IPI00364085 RefSeq:NP_001099714.1 RefSeq:XP_003748866.1
UniGene:Rn.6227 SMR:D4A531 Ensembl:ENSRNOT00000028222
GeneID:100911822 GeneID:292778 KEGG:rno:100911822 KEGG:rno:292778
NextBio:634770 Uniprot:D4A531
Length = 125
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 17/45 (37%), Positives = 22/45 (48%)
Query: 28 TTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
T + C KC H A F Q + A++ M +Y C CG RW E
Sbjct: 81 TEDHPCQKCGHKEAVFFQSHSARAEDAMRLYYVCTAPHCGHRWTE 125
>UNIPROTKB|F1N0P7 [details] [associations]
symbol:TCEA3 "Transcription elongation factor A protein 3"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0032784 "regulation of DNA-dependent transcription, elongation"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006357 "regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001222 InterPro:IPR003617 InterPro:IPR003618
InterPro:IPR006289 InterPro:IPR016492 InterPro:IPR017890
InterPro:IPR017923 Pfam:PF01096 Pfam:PF07500 Pfam:PF08711
PIRSF:PIRSF006704 PROSITE:PS51133 PROSITE:PS51319 PROSITE:PS51321
SMART:SM00440 SMART:SM00509 SMART:SM00510 GO:GO:0005634
GO:GO:0003677 GO:GO:0008270 GO:GO:0006357 GO:GO:0006351
Gene3D:1.10.472.30 SUPFAM:SSF46942 Gene3D:1.20.930.10
SUPFAM:SSF47676 GO:GO:0032784 TIGRFAMs:TIGR01385
GeneTree:ENSGT00390000017794 IPI:IPI00713590 OMA:KGLDCSD
EMBL:DAAA02006436 EMBL:DAAA02006437 Ensembl:ENSBTAT00000004501
Uniprot:F1N0P7
Length = 348
Score = 101 (40.6 bits), Expect = 9.3e-05, P = 9.3e-05
Identities = 20/40 (50%), Positives = 27/40 (67%)
Query: 32 KCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWR 71
+C KC+ + Q+QTR+ DEPMTTF CN +CG RW+
Sbjct: 310 QCSKCKKKNCTYNQVQTRT-DEPMTTFV-LCN-ECGNRWK 346
>UNIPROTKB|Q9P1U0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=TAS]
InterPro:IPR001222 InterPro:IPR012164 Pfam:PF01096
PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440
GO:GO:0005730 GO:GO:0046872 GO:GO:0006139 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:AL669914
EMBL:AL671859 EMBL:AL845439 EMBL:BX088647 CTD:30834 eggNOG:COG1594
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF024617
EMBL:AF230337 EMBL:AF230338 EMBL:CR457109 EMBL:BC010898
EMBL:BC050608 IPI:IPI00395539 RefSeq:NP_055411.1 RefSeq:NP_740753.1
UniGene:Hs.57813 ProteinModelPortal:Q9P1U0 SMR:Q9P1U0 IntAct:Q9P1U0
MINT:MINT-1435192 STRING:Q9P1U0 DMDM:71649339 PaxDb:Q9P1U0
PeptideAtlas:Q9P1U0 PRIDE:Q9P1U0 DNASU:30834
Ensembl:ENST00000332435 Ensembl:ENST00000359374
Ensembl:ENST00000376782 Ensembl:ENST00000376785
Ensembl:ENST00000383613 Ensembl:ENST00000400659
Ensembl:ENST00000400660 Ensembl:ENST00000400662
Ensembl:ENST00000412396 Ensembl:ENST00000417275
Ensembl:ENST00000417738 Ensembl:ENST00000420100
Ensembl:ENST00000428913 Ensembl:ENST00000429558
Ensembl:ENST00000431032 Ensembl:ENST00000431416
Ensembl:ENST00000432227 Ensembl:ENST00000432545
Ensembl:ENST00000432904 Ensembl:ENST00000433264
Ensembl:ENST00000437373 Ensembl:ENST00000437507
Ensembl:ENST00000441251 Ensembl:ENST00000442585
Ensembl:ENST00000443142 Ensembl:ENST00000443494
Ensembl:ENST00000444027 Ensembl:ENST00000444794
Ensembl:ENST00000446493 Ensembl:ENST00000451875
Ensembl:ENST00000453694 Ensembl:ENST00000455948 GeneID:30834
KEGG:hsa:30834 UCSC:uc003noz.3 GeneCards:GC06P030026
HGNC:HGNC:13182 MIM:607525 neXtProt:NX_Q9P1U0 PharmGKB:PA37754
InParanoid:Q9P1U0 PhylomeDB:Q9P1U0 GenomeRNAi:30834 NextBio:52944
ArrayExpress:Q9P1U0 Bgee:Q9P1U0 CleanEx:HS_ZNRD1
Genevestigator:Q9P1U0 GermOnline:ENSG00000066379 Uniprot:Q9P1U0
Length = 126
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C N C F+ +E
Sbjct: 84 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 124
>UNIPROTKB|B6ICU4 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase subunit"
species:9823 "Sus scrofa" [GO:0005634 "nucleus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 GO:GO:0008270 GO:GO:0006351
GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:CT737425 EMBL:CU607067
EMBL:AB158486 EMBL:AB158487 EMBL:AP009553 RefSeq:NP_001162172.1
RefSeq:XP_001929376.1 UniGene:Ssc.45148 STRING:B6ICU4
Ensembl:ENSSSCT00000001352 Ensembl:ENSSSCT00000001359
Ensembl:ENSSSCT00000034579 GeneID:100152094 GeneID:100155727
KEGG:ssc:100152094 KEGG:ssc:100155727 Uniprot:B6ICU4
Length = 123
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C N C F+ +E
Sbjct: 81 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 121
>MGI|MGI:1913386 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing, 1"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
Reactome:REACT_78136 InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 MGI:MGI:1913386 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008270 GO:GO:0006351 GO:GO:0003676
GO:GO:0003899 CTD:30834 eggNOG:COG1594 GeneTree:ENSGT00390000008126
HOGENOM:HOG000228133 HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM InterPro:IPR019761 PROSITE:PS01030 EMBL:AF230339
EMBL:AF230340 EMBL:AK003714 EMBL:BC043016 EMBL:AK005976
IPI:IPI00133128 RefSeq:NP_075651.1 UniGene:Mm.486229
ProteinModelPortal:Q791N7 SMR:Q791N7 STRING:Q791N7 PRIDE:Q791N7
Ensembl:ENSMUST00000113669 Ensembl:ENSMUST00000172518 GeneID:66136
KEGG:mmu:66136 UCSC:uc008clo.1 InParanoid:Q791N7
Reactome:REACT_86751 NextBio:320734 Bgee:Q791N7 CleanEx:MM_ZNRD1
Genevestigator:Q791N7 GermOnline:ENSMUSG00000036315 Uniprot:Q791N7
Length = 123
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +CP+C H + Q RSADE T FY C N C F+ +E
Sbjct: 81 DRRCPRCGHEGMAYHTRQMRSADEGQTVFYTCIN--CKFQEKE 121
>POMBASE|SPAPYUG7.04c [details] [associations]
symbol:rpb9 "DNA-directed RNA polymerase II complex
subunit Rpb9" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISO]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IC] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016591 "DNA-directed RNA polymerase II, holoenzyme"
evidence=TAS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IDA] InterPro:IPR001222 InterPro:IPR001529
InterPro:IPR012164 Pfam:PF01096 Pfam:PF02150 PIRSF:PIRSF005586
PROSITE:PS00466 PROSITE:PS51133 SMART:SM00440 SMART:SM00661
PomBase:SPAPYUG7.04c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0006366 GO:GO:0016591 GO:GO:0006283 GO:GO:0003899
EMBL:AF237418 eggNOG:COG1594 InterPro:IPR019761 PROSITE:PS01030
PDB:3H0G PDBsum:3H0G HOGENOM:HOG000228134 KO:K03017 EMBL:AB007988
PIR:T43279 RefSeq:NP_594705.1 ProteinModelPortal:O74635 SMR:O74635
MINT:MINT-1214577 STRING:O74635 EnsemblFungi:SPAPYUG7.04c.1
GeneID:2541470 KEGG:spo:SPAPYUG7.04c OMA:RFCRECS OrthoDB:EOG4GJ2ZS
EvolutionaryTrace:O74635 NextBio:20802569 Uniprot:O74635
Length = 113
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 29 TEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
++++CP+C A F Q +R D MT Y C + CGF + E
Sbjct: 71 SDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVC--VHCGFAFEE 112
>RGD|1303114 [details] [associations]
symbol:Znrd1 "zinc ribbon domain containing 1" species:10116
"Rattus norvegicus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 RGD:1303114 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 KO:K03000 OMA:SRCGHEG OrthoDB:EOG45X7XM
InterPro:IPR019761 PROSITE:PS01030 EMBL:BX883052 IPI:IPI00422027
RefSeq:NP_001159772.1 RefSeq:NP_998732.1 UniGene:Rn.4312
ProteinModelPortal:Q6MFY5 STRING:Q6MFY5 PRIDE:Q6MFY5
Ensembl:ENSRNOT00000001012 GeneID:361784 KEGG:rno:361784
UCSC:RGD:1303114 InParanoid:Q6MFY5 NextBio:677596
Genevestigator:Q6MFY5 GermOnline:ENSRNOG00000000779 Uniprot:Q6MFY5
Length = 123
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 19/44 (43%), Positives = 26/44 (59%)
Query: 30 EEKCPKCEHP-RAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +C +C H AY+ + Q RSADE T FY C N C F+ +E
Sbjct: 81 DRRCSRCGHEGMAYYTR-QMRSADEGQTVFYTCIN--CKFQEKE 121
>UNIPROTKB|Q1RMP0 [details] [associations]
symbol:ZNRD1 "DNA-directed RNA polymerase I subunit RPA12"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001222 InterPro:IPR012164
Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS00466 PROSITE:PS51133
SMART:SM00440 GO:GO:0005730 GO:GO:0046872 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 EMBL:BC114799
IPI:IPI00708048 RefSeq:NP_001039865.1 RefSeq:XP_003583930.1
UniGene:Bt.1771 ProteinModelPortal:Q1RMP0 STRING:Q1RMP0
Ensembl:ENSBTAT00000045075 GeneID:100849450 GeneID:535288
KEGG:bta:100849450 KEGG:bta:535288 CTD:30834 eggNOG:COG1594
GeneTree:ENSGT00390000008126 HOGENOM:HOG000228133
HOVERGEN:HBG055084 InParanoid:Q1RMP0 KO:K03000 OMA:SRCGHEG
OrthoDB:EOG45X7XM NextBio:20876684 ArrayExpress:Q1RMP0
InterPro:IPR019761 PROSITE:PS01030 Uniprot:Q1RMP0
Length = 123
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 30 EEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
+ +C +C H + Q RSADE T FY C N C F+ +E
Sbjct: 81 DRRCSRCGHEGMAYHTRQMRSADEGQTVFYTCTN--CKFQEKE 121
>UNIPROTKB|G4N0C7 [details] [associations]
symbol:MGG_07394 "DNA-directed RNA polymerase subunit"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001222
InterPro:IPR012164 Pfam:PF01096 PIRSF:PIRSF005586 PROSITE:PS51133
SMART:SM00440 GO:GO:0005634 EMBL:CM001233 GO:GO:0008270
GO:GO:0006351 GO:GO:0003676 GO:GO:0003899 KO:K03000
RefSeq:XP_003711272.1 ProteinModelPortal:G4N0C7
EnsemblFungi:MGG_07394T0 GeneID:2683314 KEGG:mgr:MGG_07394
Uniprot:G4N0C7
Length = 115
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 23 WENVDTTEEKCPKCEHPRAYFMQIQTRSADEPMTTFYKCCNIKCGFRWRE 72
W ++D E C C + +QTR ADE T FY C C +W+E
Sbjct: 69 WPSID---ENCRFCPSKTVRYTTLQTRGADEGSTVFYFCEG--CSQKWKE 113
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.324 0.136 0.473 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 72 72 0.00091 102 3 11 22 0.46 28
29 0.43 29
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 85
No. of states in DFA: 576 (61 KB)
Total size of DFA: 127 KB (2080 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.01u 0.08s 9.09t Elapsed: 00:00:07
Total cpu time: 9.02u 0.08s 9.10t Elapsed: 00:00:07
Start: Thu Aug 15 10:56:04 2013 End: Thu Aug 15 10:56:11 2013