BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8690
(222 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YUD|A Chain A, Solution Structure Of The Yth Domain In Yth Domain-
Containing Protein 1 (Putative Splicing Factor Yt521)
Length = 180
Score = 187 bits (476), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 84/128 (65%), Positives = 104/128 (81%)
Query: 78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
D +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct: 14 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 73
Query: 138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL
Sbjct: 74 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 133
Query: 198 NSWNEGYP 205
N WNE P
Sbjct: 134 NPWNEHKP 141
>pdb|2YU6|A Chain A, Solution Structure Of The Yth Domain In Yth Domain-
Containing Protein 2
Length = 141
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/113 (45%), Positives = 76/113 (67%), Gaps = 7/113 (6%)
Query: 90 ARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R
Sbjct: 8 VRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSR 67
Query: 150 LASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
++SE S W G +G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 68 MSSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 113
>pdb|2QL5|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL5|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dmqd-Cho
pdb|2QL7|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL7|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Iepd-Cho
pdb|2QL9|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QL9|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Dqmd-Cho
pdb|2QLB|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLB|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Esmd-Cho
pdb|2QLF|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLF|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-dnld-cho
pdb|2QLJ|A Chain A, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|2QLJ|C Chain C, Crystal Structure Of Caspase-7 With Inhibitor Ac-Wehd-Cho
pdb|3EDR|A Chain A, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3EDR|C Chain C, The Crystal Structure Of Caspase-7 In Complex With
Acetyl-ldesd-cho
pdb|3IBC|A Chain A, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBC|C Chain C, Crystal Structure Of Caspase-7 Incomplex With Acetyl-Yvad-
Cho
pdb|3IBF|A Chain A, Crystal Structure Of Unliganded Caspase-7
pdb|3IBF|C Chain C, Crystal Structure Of Unliganded Caspase-7
Length = 173
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 59 ARSAEKVTARPEKPT---IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTL 115
++ + VT R K T + TY Y L + +I N++N D G GV +
Sbjct: 14 SKKKKNVTMRSIKTTRDRVPTYQYNMNFEKL---GKCIII---NNKNFDKVTGMGVRNGT 67
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
++ + L + +R +++++ K + ASE DH
Sbjct: 68 DKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 108
>pdb|1I4O|A Chain A, Crystal Structure Of The XiapCASPASE-7 Complex
pdb|1I4O|B Chain B, Crystal Structure Of The XiapCASPASE-7 Complex
Length = 280
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 59 ARSAEKVTARPEKPT---IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTL 115
++ + VT R K T + TY Y L + +I N++N D G GV +
Sbjct: 14 SKKKKNVTMRSIKTTRDRVPTYQYNMNFEKL---GKCIII---NNKNFDKVTGMGVRNGT 67
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
++ + L + +R +++++ K + ASE DH
Sbjct: 68 DKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 108
>pdb|3R5K|A Chain A, A Designed Redox-Controlled Caspase-7
pdb|3R5K|B Chain B, A Designed Redox-Controlled Caspase-7
Length = 312
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 59 ARSAEKVTARPEKPT---IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTL 115
++ + VT R K T + TY Y L + +I N++N D G GV +
Sbjct: 37 SKKKKNVTMRSIKTTRDRVPTYQYNMNFEKL---GKCIII---NNKNFDKVTGMGVRNGT 90
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
++ + L + +R +++++ K + ASE DH
Sbjct: 91 DKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 131
>pdb|4FDL|A Chain A, Crystal Structure Of Caspase-7
pdb|4FDL|B Chain B, Crystal Structure Of Caspase-7
Length = 305
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 59 ARSAEKVTARPEKPT---IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTL 115
++ + VT R K T + TY Y L + +I N++N D G GV +
Sbjct: 39 SKKKKNVTMRSIKTTRDRVPTYQYNMNFEKL---GKCIII---NNKNFDKVTGMGVRNGT 92
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
++ + L + +R +++++ K + ASE DH
Sbjct: 93 DKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 133
>pdb|1F1J|A Chain A, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
pdb|1F1J|B Chain B, Crystal Structure Of Caspase-7 In Complex With
Acetyl-asp-glu-val-asp- Cho
Length = 305
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 59 ARSAEKVTARPEKPT---IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTL 115
++ + VT R K T + TY Y L + +I N++N D G GV +
Sbjct: 39 SKKKKNVTMRSIKTTRDRVPTYQYNMNFEKL---GKCIII---NNKNFDKVTGMGVRNGT 92
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
++ + L + +R +++++ K + ASE DH
Sbjct: 93 DKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 133
>pdb|1KMC|A Chain A, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
pdb|1KMC|B Chain B, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex
Length = 303
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 9/101 (8%)
Query: 59 ARSAEKVTARPEKPT---IRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTL 115
++ + VT R K T + TY Y L + +I N++N D G GV +
Sbjct: 37 SKKKKNVTMRSIKTTRDRVPTYQYNMNFEKL---GKCIII---NNKNFDKVTGMGVRNGT 90
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
++ + L + +R +++++ K + ASE DH
Sbjct: 91 DKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 131
>pdb|2OJY|A Chain A, Crystal Structure Of Indol-3-Acetaldehyde Derived
Ttq-Amide Adduct Of Aromatic Amine Dehydrogenase
pdb|2OJY|B Chain B, Crystal Structure Of Indol-3-Acetaldehyde Derived
Ttq-Amide Adduct Of Aromatic Amine Dehydrogenase
pdb|2HKM|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Phenylethylamine.
pdb|2HKM|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Phenylethylamine.
pdb|2HKR|A Chain A, Structures Of The Carbinolamine And Schiff-Base
Intermediates In The Reductive Half-Reaction Of Aromatic
Amine Dehydrogenase (Aadh) With
P-Methoxyphenylethylamine
pdb|2HKR|B Chain B, Structures Of The Carbinolamine And Schiff-Base
Intermediates In The Reductive Half-Reaction Of Aromatic
Amine Dehydrogenase (Aadh) With
P-Methoxyphenylethylamine
Length = 362
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 50 KGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINY--LFR---DARFFVIKSNNSEN-- 102
+G+ +V + A+K+T EK + +NY LFR D +F V+++ +
Sbjct: 77 RGKRSDVVEVWDADKLTF--EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI 134
Query: 103 --VDIAKGQ---------GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
VD+AKG G WS +PQ + + LL ++ E GK + +R
Sbjct: 135 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 192
>pdb|2H3X|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H3X|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dehydrogenase And Azurin From Alcaligenes
Faecalis (Form 3)
pdb|2H47|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|F Chain F, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2H47|H Chain H, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (Form 1)
pdb|2IAA|A Chain A, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
pdb|2IAA|D Chain D, Crystal Structure Of An Electron Transfer Complex Between
Aromatic Amine Dephydrogenase And Azurin From
Alcaligenes Faecalis (form 2)
Length = 390
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 50 KGRSVEVKKARSAEKVTARPE--KPTIRTYDYITKINY--LFR---DARFFVIKSNNSEN 102
+G+ +V + A+K+T E P R + +NY LFR D +F V+++ +
Sbjct: 105 RGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASPAT 160
Query: 103 ----VDIAKGQ---------GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
VD+AKG G WS +PQ + + LL ++ E GK + +R
Sbjct: 161 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 220
>pdb|2I0S|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
pdb|2I0S|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct
Length = 360
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 50 KGRSVEVKKARSAEKVTARPE--KPTIRTYDYITKINY--LFR---DARFFVIKSNNSEN 102
+G+ +V + A+K+T E P R + +NY LFR D +F V+++ +
Sbjct: 75 RGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASPAT 130
Query: 103 ----VDIAKGQ---------GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
VD+AKG G WS +PQ + + LL ++ E GK + +R
Sbjct: 131 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 190
>pdb|2HXC|A Chain A, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2HXC|B Chain B, Crystal Structure Of The Benzylamine Complex Of Aromatic
Amine Dehydrogenase In N-Semiquinone Form
pdb|2I0R|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
pdb|2I0R|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Formamide Adduct
Length = 361
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 50 KGRSVEVKKARSAEKVTARPE--KPTIRTYDYITKINY--LFR---DARFFVIKSNNSEN 102
+G+ +V + A+K+T E P R + +NY LFR D +F V+++ +
Sbjct: 76 RGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASPAT 131
Query: 103 ----VDIAKGQ---------GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
VD+AKG G WS +PQ + + LL ++ E GK + +R
Sbjct: 132 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191
>pdb|2Q7Q|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Chlorobenzylamine.
pdb|2Q7Q|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Chlorobenzylamine
Length = 361
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 50 KGRSVEVKKARSAEKVTARPE--KPTIRTYDYITKINY--LFR---DARFFVIKSNNSEN 102
+G+ +V + A+K+T E P R + +NY LFR D +F V+++ +
Sbjct: 76 RGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASPAT 131
Query: 103 ----VDIAKGQ---------GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
VD+AKG G WS +PQ + + LL ++ E GK + +R
Sbjct: 132 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191
>pdb|2AGL|A Chain A, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGL|B Chain B, Crystal Structure Of The Phenylhydrazine Adduct Of
Aromatic Amine Dehydrogenase From Alcaligenes Faecalis
pdb|2AGW|A Chain A, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGW|B Chain B, Crystal Structure Of Tryptamine-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2AGX|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGX|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. P212121 Form
pdb|2AGY|A Chain A, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGY|B Chain B, Crystal Structure Of The Schiff Base Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AGZ|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. F222 Form
pdb|2AGZ|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. F222 Form
pdb|2AH0|A Chain A, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AH0|B Chain B, Crystal Structure Of The Carbinolamine Intermediate In The
Reductive Half-Reaction Of Aromatic Amine Dehydrogenase
(Aadh) With Tryptamine. Monoclinic Form
pdb|2AH1|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2AH1|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase (Aadh)
From Alcaligenes Faecalis
pdb|2IUP|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUP|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis
pdb|2IUQ|A Chain A, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUQ|B Chain B, Crystal Structure Of Dithionite-Reduced Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis In
Complex With Tryptamine
pdb|2IUR|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUR|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form A
Cocrystal
pdb|2IUV|A Chain A, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2IUV|B Chain B, Crystal Structure Of N-Quinol Form Of Aromatic Amine
Dehydrogenase (Aadh) From Alcaligenes Faecalis, Form B
pdb|2OK4|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2OK4|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase Ttq-
Phenylacetaldehyde Adduct Oxidized With Ferricyanide
pdb|2I0T|A Chain A, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2I0T|B Chain B, Crystal Structure Of Phenylacetaldehyde Derived R-
Carbinolamine Adduct Of Aromatic Amine Dehydrogenase
pdb|2OIZ|A Chain A, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OIZ|B Chain B, Crystal Structure Of The Tryptamine-Derived
(Indol-3-Acetamide)-Ttq Adduct Of Aromatic Amine
Dehydrogenase
pdb|2OK6|A Chain A, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2OK6|B Chain B, Crystal Structure Of Aromatic Amine Dehydrogenase
Ttq-Formamide Adduct Oxidized With Ferricyanide.
pdb|2HJ4|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJ4|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh Complex
With P- Nitrobenzylamine
pdb|2HJB|A Chain A, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Methoxybenzylamine
pdb|2HJB|B Chain B, Crystal Structure Of Alcaligenes Faecalis Aadh In Complex
With P- Methoxybenzylamine
Length = 361
Score = 28.5 bits (62), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 24/120 (20%)
Query: 50 KGRSVEVKKARSAEKVTARPE--KPTIRTYDYITKINY--LFR---DARFFVIKSNNSEN 102
+G+ +V + A+K+T E P R + +NY LFR D +F V+++ +
Sbjct: 76 RGKRSDVVEVWDADKLTFEKEISLPPKR----VQGLNYDGLFRQTTDGKFIVLQNASPAT 131
Query: 103 ----VDIAKGQ---------GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
VD+AKG G WS +PQ + + LL ++ E GK + +R
Sbjct: 132 SIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSR 191
>pdb|1K86|A Chain A, Crystal Structure Of Caspase-7
pdb|1K86|B Chain B, Crystal Structure Of Caspase-7
Length = 253
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 24 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 81
>pdb|1K88|A Chain A, Crystal Structure Of Procaspase-7
pdb|1K88|B Chain B, Crystal Structure Of Procaspase-7
Length = 253
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 24 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 81
>pdb|1GQF|A Chain A, Crystal Structure Of Human Procaspase-7
pdb|1GQF|B Chain B, Crystal Structure Of Human Procaspase-7
Length = 265
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 28 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 85
>pdb|1SHJ|A Chain A, Caspase-7 In Complex With Dica Allosteric Inhibitor
pdb|1SHJ|B Chain B, Caspase-7 In Complex With Dica Allosteric Inhibitor
Length = 262
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 25 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 82
>pdb|4FEA|A Chain A, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
pdb|4FEA|B Chain B, Crystal Structure Of Caspase-7 In Complex With Allosteric
Inhibitor
Length = 247
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 18 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 75
>pdb|3H1P|A Chain A, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
pdb|3H1P|B Chain B, Mature Caspase-7 I213a With Devd-Cho Inhibitor Bound To
Active Site
Length = 260
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 25 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 82
>pdb|1I51|A Chain A, Crystal Structure Of Caspase-7 Complexed With Xiap
pdb|1I51|C Chain C, Crystal Structure Of Caspase-7 Complexed With Xiap
Length = 148
Score = 28.1 bits (61), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 24 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 81
>pdb|1SHL|A Chain A, Caspase-7 In Complex With Fica Allosteric Inhibitor
pdb|1SHL|B Chain B, Caspase-7 In Complex With Fica Allosteric Inhibitor
Length = 245
Score = 28.1 bits (61), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 99 NSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
N++N D G GV + ++ + L + +R +++++ K + ASE DH
Sbjct: 18 NNKNFDKVTGMGVRNGTDKDAEALFKCFRSLGFDVIVYNDCSCAKMQDLLKKASEEDH 75
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,378,152
Number of Sequences: 62578
Number of extensions: 250586
Number of successful extensions: 1265
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1248
Number of HSP's gapped (non-prelim): 23
length of query: 222
length of database: 14,973,337
effective HSP length: 95
effective length of query: 127
effective length of database: 9,028,427
effective search space: 1146610229
effective search space used: 1146610229
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)