Query psy8690
Match_columns 222
No_of_seqs 132 out of 313
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 16:44:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8690.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8690hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04146 YTH: YT521-B-like dom 100.0 1.8E-48 3.9E-53 317.9 9.1 127 89-217 1-127 (140)
2 KOG1902|consensus 100.0 6.8E-46 1.5E-50 340.4 9.9 139 82-221 64-209 (441)
3 KOG1901|consensus 100.0 2.8E-40 6.2E-45 314.4 9.5 131 83-219 292-428 (487)
4 PRK00809 hypothetical protein; 97.2 0.0027 5.8E-08 52.7 8.6 99 91-193 2-108 (144)
5 PF01878 EVE: EVE domain; Int 91.5 0.17 3.8E-06 40.6 3.0 98 91-193 1-110 (143)
6 PRK02268 hypothetical protein; 80.3 9.4 0.0002 32.0 7.4 97 91-199 3-110 (141)
7 PF06199 Phage_tail_2: Phage m 61.9 24 0.00052 27.6 5.5 46 109-154 66-111 (134)
8 PF00076 RRM_1: RNA recognitio 49.1 68 0.0015 21.1 5.4 35 117-151 10-45 (70)
9 KOG2140|consensus 30.5 28 0.00061 35.6 1.5 8 11-18 644-651 (739)
10 PF14303 NAM-associated: No ap 21.4 94 0.002 24.8 2.8 12 12-23 11-22 (154)
No 1
>PF04146 YTH: YT521-B-like domain; InterPro: IPR007275 A protein of the YTH family has been shown to selectively remove transcripts of meiosis-specific genes expressed in mitotic cells []. It has been speculated that in higher eukaryotic YTH-family members may be involved in similar mechanaisms to suppress gene regulation during gametogenesis or general silencing. The rat protein YT521-B, Q9QY02 from SWISSPROT, is a tyrosine-phosphorylated nuclear protein, that interacts with the nuclear transcriptosomal component scaffold attachment factor B, and the 68kDa Src substrate associated during mitosis, Sam68. In vivo splicing assays demonstrated that YT521-B modulates alternative splice site selection in a concentration-dependent manner []. The domain is predicted to have four alpha helices and six beta strands []. In plant cells environmental stimuli, which light, pathogens, hormones, and abiotic stresses, elicit changes in the cytosolic Ca levels but little is known of the cytosolic-nuclear Ca-signaling pathway; where gene regulation occurs to respond appropriately to the stress. It has been demonstrated that two novel Arabidopsis thaliana (Mouse-ear cress) proteins, (ECT1 and ECT2), specifically associated with Calcineurin B-Like-Interacting Protein Kinase1 (CIPK1), a member of Ser/Thr protein kinases that interact with the calcineurin B-like Ca-binding proteins. These two proteins contain a very similar C-terminal region (180 amino acids in length, 81% similarity), which is required and sufficient for both interaction with CIPK1 and translocation to the nucleus. This domain, the YTH-domain, is conserved across all eukaryotes and suggests that the conserved C-terminal region plays a critical role in relaying the cytosolic Ca-signals to the nucleus, thereby regulating gene expression [].; PDB: 2YUD_A 2YU6_A.
Probab=100.00 E-value=1.8e-48 Score=317.94 Aligned_cols=127 Identities=42% Similarity=0.679 Sum_probs=102.6
Q ss_pred CceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCC
Q psy8690 89 DARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPG 168 (222)
Q Consensus 89 ~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g 168 (222)
++|||||||+|++||++|+++|||+||++|+++|++||+++++||||||||+||+|||||+|+|+++.+.....|...
T Consensus 1 ~~rfFiiKS~~~~ni~~s~~~gvW~t~~~~~~~L~~Af~~~~~V~L~FSvn~S~~F~G~A~M~s~~~~~~~~~~w~~~-- 78 (140)
T PF04146_consen 1 NARFFIIKSFNEENIHLSIKYGVWATQPKNEKKLNEAFKESRNVYLFFSVNGSGHFQGYARMTSPIDPDSPKPFWQQD-- 78 (140)
T ss_dssp --EEEEEEESSCHHHHHHHHCTEEE--CCCHHHHHHHHHHSS-EEEEEEETTTSEEEEEEEEECECCSSS------SS--
T ss_pred CcEEEEEEECCHHHHHHHHhCCEEcccccchHHHHHHHHhCCCEEEEEeecCcceEEEEEEEccCCCCcccCcccccc--
Confidence 589999999999999999999999999999999999999999999999999999999999999999998888899542
Q ss_pred CCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCChhhhh
Q psy8690 169 LSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALF 217 (222)
Q Consensus 169 ~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~~~~l 217 (222)
....+|+|.|+|+||++++|||+.++||+||||+||||+.+||++|...
T Consensus 79 ~~~~~~~g~F~v~Wl~~~~lpf~~~~hl~n~~n~~~pV~~~rDgqEi~~ 127 (140)
T PF04146_consen 79 SSSSKWGGPFRVEWLRVKDLPFSKLRHLRNPLNENKPVKISRDGQEIEP 127 (140)
T ss_dssp -SGCGG-SEEEEEEEE-S-EEHHHHTT-EETTTTTEETTS--TTEEE-C
T ss_pred ccccccCCceEEEEEECCcCChHHhcccccccCCCcEEEECCCCEEeCH
Confidence 2347899999999999999999999999999999999999999977543
No 2
>KOG1902|consensus
Probab=100.00 E-value=6.8e-46 Score=340.43 Aligned_cols=139 Identities=53% Similarity=0.929 Sum_probs=127.9
Q ss_pred ccccCCCCceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCc
Q psy8690 82 KINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPV 161 (222)
Q Consensus 82 ~l~~~~~~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~~~~~~~~ 161 (222)
++.....++|||||||+|.+||++|+++|||+||+.||++||.||.++..||||||||+||||||||+|+|+|+......
T Consensus 64 ~ss~~~~~~rYFIiKS~N~eN~elSvqkGiWaTq~sNE~kLn~AF~~s~~ViLIFSVn~SghFQG~ArMsS~IG~~~~q~ 143 (441)
T KOG1902|consen 64 KLKYVLQDARYFIIKSNNHENVELSVQKGVWSTQPSNEKKLNLAFRSSRSVILIFSVNESGHFQGFARMSSEIGHGGSQI 143 (441)
T ss_pred cccccCCceEEEEEecCCccceeeehhcceeccccccHHHHHHHHhhcCcEEEEEEecccccchhhhhhcchhccCCCCc
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred cccCCCCCCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCCh-------hhhhhhhc
Q psy8690 162 KWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDP-------AALFDYMR 221 (222)
Q Consensus 162 ~W~~~~g~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~-------~~~ld~m~ 221 (222)
.|..+.|++ ..||++|+|+||++++|||+++.||+|||||||||+-+||+| ++|+.|++
T Consensus 144 ~W~~~~G~~-a~~G~~FkVkWiRl~eLpFqkt~hL~NP~NdnkpVKISRD~QELep~VGEqL~~Ll~ 209 (441)
T KOG1902|consen 144 HWVLPAGMS-AMLGGVFKVKWIRLRELPFQKTAHLTNPWNENKPVKISRDGQELEPEVGEQLCLLLP 209 (441)
T ss_pred cccccCCcc-cccCceeeEeEEeeccccchhhhhcCCcccccCceeecccccccChhHHHHHHHhcC
Confidence 999987764 679999999999999999999999999999999999888885 45666553
No 3
>KOG1901|consensus
Probab=100.00 E-value=2.8e-40 Score=314.42 Aligned_cols=131 Identities=29% Similarity=0.490 Sum_probs=124.0
Q ss_pred cccCCCCceEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCC------cEEEEEEECCCCceeEEEEeecCCCC
Q psy8690 83 INYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESR------NVLLIFSVRESGKFSGFARLASEADH 156 (222)
Q Consensus 83 l~~~~~~aRFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~------~V~LfFSVN~Sg~FqGyArM~S~~~~ 156 (222)
|.....++|||||||++|+|||+|++|+||++|.++|++|+.||++++ +||||||||.||+|||+|+|+++++.
T Consensus 292 f~~~~~nAkfFVIKSySEDdVHkSIKY~vWsST~~GNKkLdaAYreak~~~~~cPvfLfFSVNaSGqFCGvAEMvgPVdf 371 (487)
T KOG1901|consen 292 FLTDYSNAKFFVIKSYSEDDVHKSIKYNVWSSTLNGNKKLDAAYREAKKKSGKCPVFLFFSVNASGQFCGVAEMVGPVDF 371 (487)
T ss_pred cccccccceEEEEeccChhhhhhhcccceeecccCCchhhHHHHHHhhhccCCCCceEEEEEcCCccccceeeeccceec
Confidence 334567999999999999999999999999999999999999999875 89999999999999999999999999
Q ss_pred CCCCccccCCCCCCCCccCCcceEEEEEeeeccCCCccccccCCCCCCCcccCCCChhhhhhh
Q psy8690 157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDY 219 (222)
Q Consensus 157 ~~~~~~W~~~~g~~~~~~gg~F~VeWL~~~dLPF~~~~HL~Np~NenKPV~~~~~~~~~~ld~ 219 (222)
+....+|+. ++|.|.|.|+|+.++|||+..++||+...||||||+|+||+||+.|+.
T Consensus 372 n~~~~~WqQ------DKW~G~FpVKWhiVKDVPNs~lrHI~LeNNeNKPVTnSRDTQEV~leq 428 (487)
T KOG1901|consen 372 NKDMEYWQQ------DKWSGSFPVKWHIVKDVPNSQLRHIILENNENKPVTNSRDTQEVPLEQ 428 (487)
T ss_pred ccccchhhh------cccceecceeeEEEeeCCccceeEEEeecCCCCCcccccccceecHHH
Confidence 999999984 689999999999999999999999999999999999999999998864
No 4
>PRK00809 hypothetical protein; Provisional
Probab=97.16 E-value=0.0027 Score=52.72 Aligned_cols=99 Identities=18% Similarity=0.296 Sum_probs=73.1
Q ss_pred eEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC------CCCceeEEEEeecCCCCCCCCcccc
Q psy8690 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR------ESGKFSGFARLASEADHGVSPVKWV 164 (222)
Q Consensus 91 RFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN------~Sg~FqGyArM~S~~~~~~~~~~W~ 164 (222)
+|.|+=+ |++|+..++++|+|......-.-|.+ -.....+|||+-+ .-+.|-|.|++++....+ ++..|.
T Consensus 2 ~yWi~~~-~~~~~~~~~~~gv~g~~~~~rn~lr~--Mk~GD~v~fYhs~~~~~~~~~~~ivgi~eV~~~~y~D-~t~~~p 77 (144)
T PRK00809 2 TYWLCIT-NEDNWEVIKDKNVWGVPERYKNTIEK--VKPGDKLIIYVSQEYGAERLPGKIVGIYEVVSEWYED-STPIFP 77 (144)
T ss_pred ceEEEec-CHHHHHHHHhCCEeecchhhhhHHhh--CCCCCEEEEEECCccCCCCCCceEEEEEEEecCcccC-CccCCC
Confidence 5777766 89999999999999997765555555 4456778888887 578999999999997554 455664
Q ss_pred CCCCCCCCccCCcceEEEEEeee--ccCCCc
Q psy8690 165 LPPGLSGKVLNGVFKIDWVSRKE--LPFTST 193 (222)
Q Consensus 165 ~~~g~~~~~~gg~F~VeWL~~~d--LPF~~~ 193 (222)
++..+....+--..+|+++...+ ||...+
T Consensus 78 ~~~~~~~~~~p~rvdV~~~~~~~~~v~l~~L 108 (144)
T PRK00809 78 AEPVRPKEIYPYRVKLKPVKIFEEPIDFKPL 108 (144)
T ss_pred ccccCCCCCceEEEEEEEeeecCCcccHHHH
Confidence 43333334444677889998878 776655
No 5
>PF01878 EVE: EVE domain; InterPro: IPR002740 The EVE domain is part of the wider PUA domain superfamily. The function of this domain is not known but, given the structural similarities to PUA, is likely to involve RNA binding []. ; PDB: 2G2X_B 2AR1_A 3EOP_A 2EVE_A 2HD9_A 2ZBN_A 1WMM_A 2P5D_A 2GBS_A 1ZCE_A.
Probab=91.54 E-value=0.17 Score=40.65 Aligned_cols=98 Identities=13% Similarity=0.215 Sum_probs=52.1
Q ss_pred eEEEEecC----ChhhH---HHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC-CCCceeEEEEeecCCCCCCCCcc
Q psy8690 91 RFFVIKSN----NSENV---DIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR-ESGKFSGFARLASEADHGVSPVK 162 (222)
Q Consensus 91 RFFIIKS~----n~eNI---~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN-~Sg~FqGyArM~S~~~~~~~~~~ 162 (222)
+|+|+|+. ..+++ ......|+|-.+..+ .|. ..+.++ -+|||.-+ +.+.|.|.|+.++....+. ...
T Consensus 1 ~YWl~~~~P~~~~~~~~~~~~~~~~~gv~~~~~~~--~l~-~mk~GD-~vifY~s~~~~~~ivai~~V~~~~~~d~-~~~ 75 (143)
T PF01878_consen 1 RYWLLKANPENFSIDDLEHWGVTVWDGVRNYQARK--NLK-RMKPGD-KVIFYHSGCKERGIVAIGEVVSEPYPDP-TAF 75 (143)
T ss_dssp -EEEEEEBTTTSHHHHHHHHSEEECHTEEEHHHHH--HHH-C--TT--EEEEEETSSSS-EEEEEEEEEEEEEE-G-GGT
T ss_pred CEEEEEeCCcccCHHHhcccceEEEcCEeehhhhh--hhh-cCCCCC-EEEEEEcCCCCCEEEEEEEEeccccCCC-ccc
Confidence 68999996 44444 334556666555554 222 344544 45556555 6799999999999854321 122
Q ss_pred ccCCCCCCCCc--cCCcceEEEEEeee--ccCCCc
Q psy8690 163 WVLPPGLSGKV--LNGVFKIDWVSRKE--LPFTST 193 (222)
Q Consensus 163 W~~~~g~~~~~--~gg~F~VeWL~~~d--LPF~~~ 193 (222)
|..+...+.+. .....+|+++..-+ |+...+
T Consensus 76 ~~~~~~~~~~~~~~~~~v~v~~~~~~~~pi~l~~L 110 (143)
T PF01878_consen 76 DPDSPYYDPKSNPKPYRVDVEYVKIFEKPIPLKEL 110 (143)
T ss_dssp STTSTTBTTTSCSSSEEEEEEEEEEEEEEEEHHHH
T ss_pred cccccCcCCccCCCeeEEEEEEEEecCCCcCHHHH
Confidence 22221212222 45567888887644 444544
No 6
>PRK02268 hypothetical protein; Provisional
Probab=80.35 E-value=9.4 Score=31.98 Aligned_cols=97 Identities=10% Similarity=0.186 Sum_probs=63.5
Q ss_pred eEEEEecCChhhHHHhhccCeeecCcccHHHHHHHHhcCCcEEEEEEEC-------CCCceeEEEEeecCCCCCCCCccc
Q psy8690 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVR-------ESGKFSGFARLASEADHGVSPVKW 163 (222)
Q Consensus 91 RFFIIKS~n~eNI~~Si~~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN-------~Sg~FqGyArM~S~~~~~~~~~~W 163 (222)
+|.|.=. +.+|+.+.++.|+|-.-.....-|.+- ....-+|+||=. .=++|-|++++++.--..
T Consensus 3 ~yWI~v~-s~~hv~~g~~~gf~qv~hgK~apl~Rm--kpGD~ivyYsp~~~~~~~~~~qaftAig~V~~~~~Yq------ 73 (141)
T PRK02268 3 RYWIGVV-SAEHVRRGVEGGFMQVCHGKAAPLRRM--KPGDWIIYYSPKTTFGGKDKLQAFTAIGKVKDDEPYQ------ 73 (141)
T ss_pred ceEEEEc-cHHHHHHHHhCCEEEeCCCccchhhcC--CCCCEEEEEeceEecCCCcccceEEEEEEEcCCceEe------
Confidence 5665544 799999999999998866655556542 234566777732 347899999998862111
Q ss_pred cCCCCCCCCccCCcceEEEEEeeeccCC----CccccccC
Q psy8690 164 VLPPGLSGKVLNGVFKIDWVSRKELPFT----STLHLYNS 199 (222)
Q Consensus 164 ~~~~g~~~~~~gg~F~VeWL~~~dLPF~----~~~HL~Np 199 (222)
.. +....+--..+|+|+...++|++ .+..++|+
T Consensus 74 -~~--m~~~f~P~Rr~v~~~~~~e~pi~pLi~~L~Fi~~k 110 (141)
T PRK02268 74 -VE--MAPGFIPWRRDVDYYPCAETPIRPLLDHLDFTEDR 110 (141)
T ss_pred -cc--cCCCceeEEEEeeEeecCccchHHhhcccceeeCc
Confidence 11 11122234567899999999976 44566664
No 7
>PF06199 Phage_tail_2: Phage major tail protein 2; InterPro: IPR011855 This entry describes the major tail protein (MTP) of the Siphoviridae and MTP genes in prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg9 (RCAP_rcc01691) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].
Probab=61.86 E-value=24 Score=27.64 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=39.0
Q ss_pred cCeeecCcccHHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCC
Q psy8690 109 QGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEA 154 (222)
Q Consensus 109 ~GIWaTt~~Ne~kLn~AFk~s~~V~LfFSVN~Sg~FqGyArM~S~~ 154 (222)
.|+|.........|.+||.....|.+-+-+++.+.|.|.+.+++--
T Consensus 66 ~g~~~~~d~~~~~l~~a~~~~~~~~~~v~~~~~~~~~g~~~vts~~ 111 (134)
T PF06199_consen 66 EGLFDPDDASYDALEDAFDNGEPVEWRVTKPDGGKYEGKFFVTSLE 111 (134)
T ss_pred EEEEecCchHHHHHHHHHHCCCcEEEEEEECCCCEEEEEEEEEECc
Confidence 4567766788899999999999998888889999999999987753
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=49.07 E-value=68 Score=21.06 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=26.6
Q ss_pred ccHHHHHHHHhcCCcE-EEEEEECCCCceeEEEEee
Q psy8690 117 QNEQKLNQAYRESRNV-LLIFSVRESGKFSGFARLA 151 (222)
Q Consensus 117 ~Ne~kLn~AFk~s~~V-~LfFSVN~Sg~FqGyArM~ 151 (222)
-+++.|.++|.....| .+.+..+.+++..|||-+.
T Consensus 10 ~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~ 45 (70)
T PF00076_consen 10 VTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVE 45 (70)
T ss_dssp SSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEE
T ss_pred CCHHHHHHHHHHhhhcccccccccccccccceEEEE
Confidence 3568899999998877 4444555889999998754
No 9
>KOG2140|consensus
Probab=30.49 E-value=28 Score=35.64 Aligned_cols=8 Identities=50% Similarity=0.850 Sum_probs=3.2
Q ss_pred ccccCCCC
Q psy8690 11 PKLKDLPK 18 (222)
Q Consensus 11 ~~~~~~~~ 18 (222)
..|+..||
T Consensus 644 e~L~~~pk 651 (739)
T KOG2140|consen 644 EYLKNMPK 651 (739)
T ss_pred HHHHhcch
Confidence 33444443
No 10
>PF14303 NAM-associated: No apical meristem-associated C-terminal domain
Probab=21.38 E-value=94 Score=24.78 Aligned_cols=12 Identities=33% Similarity=0.523 Sum_probs=9.7
Q ss_pred cccCCCCccCCC
Q psy8690 12 KLKDLPKFHNDS 23 (222)
Q Consensus 12 ~~~~~~~~~~~~ 23 (222)
.|++-|||++..
T Consensus 11 iLr~~pKW~~~~ 22 (154)
T PF14303_consen 11 ILRDEPKWQAYR 22 (154)
T ss_pred HHcCCccccccc
Confidence 588999998874
Done!