Your job contains 1 sequence.
>psy8690
MAAVEMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKAR
SAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQ
KLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKI
DWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMRS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8690
(222 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q96MU7 - symbol:YTHDC1 "YTH domain-containing p... 466 1.1e-45 2
RGD|621706 - symbol:Ythdc1 "YTH domain containing 1" spec... 457 1.3e-45 2
FB|FBgn0027616 - symbol:YT521-B "YT521-B" species:7227 "D... 477 4.6e-45 1
ZFIN|ZDB-GENE-041114-114 - symbol:ythdc1 "YTH domain cont... 467 3.2e-44 1
UNIPROTKB|F1NS70 - symbol:YTHDC2 "Uncharacterized protein... 275 1.5e-22 1
UNIPROTKB|E2QZR7 - symbol:YTHDC2 "Uncharacterized protein... 263 4.8e-22 2
UNIPROTKB|F1RLG0 - symbol:YTHDC2 "Uncharacterized protein... 262 3.0e-21 1
UNIPROTKB|F1MNU7 - symbol:YTHDC2 "Uncharacterized protein... 262 4.1e-21 1
MGI|MGI:2448561 - symbol:Ythdc2 "YTH domain containing 2"... 262 4.2e-21 1
UNIPROTKB|Q9H6S0 - symbol:YTHDC2 "Probable ATP-dependent ... 261 5.2e-21 1
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 207 9.0e-16 1
TAIR|locus:2118046 - symbol:AT4G11970 "AT4G11970" species... 192 1.8e-14 1
ASPGD|ASPL0000015049 - symbol:AN10537 species:162425 "Eme... 142 5.5e-13 2
TAIR|locus:2159391 - symbol:ECT3 "AT5G61020" species:3702... 158 1.1e-10 1
TAIR|locus:2010494 - symbol:ECT9 "AT1G27960" species:3702... 154 3.5e-10 1
TAIR|locus:2095938 - symbol:ECT1 "evolutionarily conserve... 147 1.3e-09 1
MGI|MGI:1917431 - symbol:Ythdf1 "YTH domain family 1" spe... 141 1.9e-08 1
ZFIN|ZDB-GENE-040426-2786 - symbol:ythdf1 "YTH domain fam... 140 5.5e-08 1
TAIR|locus:2161213 - symbol:ECT10 "evolutionarily conserv... 139 7.0e-08 1
TAIR|locus:2089280 - symbol:ECT5 "AT3G13060" species:3702... 135 5.4e-07 1
TAIR|locus:2092815 - symbol:ECT2 "evolutionarily conserve... 134 8.1e-07 1
CGD|CAL0002569 - symbol:orf19.1939 species:5476 "Candida ... 128 2.3e-06 1
UNIPROTKB|Q5A1Q7 - symbol:CaO19.1939 "Putative uncharacte... 128 2.3e-06 1
TAIR|locus:2207405 - symbol:ECT8 "AT1G79270" species:3702... 127 5.7e-06 1
UNIPROTKB|Q9Y5A9 - symbol:YTHDF2 "YTH domain family prote... 127 6.6e-06 1
SGD|S000002782 - symbol:YDR374C "Putative protein of unkn... 122 1.0e-05 1
UNIPROTKB|Q7Z739 - symbol:YTHDF3 "YTH domain family prote... 125 1.3e-05 1
MGI|MGI:1918850 - symbol:Ythdf3 "YTH domain family 3" spe... 125 1.3e-05 1
TAIR|locus:2024286 - symbol:ECT11 "AT1G09810" species:370... 120 4.0e-05 1
TAIR|locus:2088995 - symbol:ECT6 "AT3G17330" species:3702... 117 0.00013 1
>UNIPROTKB|Q96MU7 [details] [associations]
symbol:YTHDC1 "YTH domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
GO:GO:0016604 GO:GO:0000398 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK056430 EMBL:AC074378 EMBL:BC041119
EMBL:BC053863 EMBL:AB075846 IPI:IPI00144293 IPI:IPI00376222
RefSeq:NP_001026902.1 RefSeq:NP_588611.2 UniGene:Hs.175955 PDB:2YUD
PDBsum:2YUD ProteinModelPortal:Q96MU7 SMR:Q96MU7 IntAct:Q96MU7
STRING:Q96MU7 PhosphoSite:Q96MU7 DMDM:47606762 PaxDb:Q96MU7
PRIDE:Q96MU7 Ensembl:ENST00000344157 Ensembl:ENST00000355665
GeneID:91746 KEGG:hsa:91746 UCSC:uc003hdx.3 UCSC:uc003hdy.3
CTD:91746 GeneCards:GC04M069176 HGNC:HGNC:30626 HPA:HPA036462
HPA:HPA036463 neXtProt:NX_Q96MU7 PharmGKB:PA143485673
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
InParanoid:Q96MU7 OMA:VIHKMRH OrthoDB:EOG4ZW5BC PhylomeDB:Q96MU7
ChiTaRS:YTHDC1 EvolutionaryTrace:Q96MU7 GenomeRNAi:91746
NextBio:77419 Bgee:Q96MU7 CleanEx:HS_YTHDC1 Genevestigator:Q96MU7
GermOnline:ENSG00000083896 Uniprot:Q96MU7
Length = 727
Score = 466 (169.1 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 84/128 (65%), Positives = 104/128 (81%)
Query: 78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
D +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct: 343 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 402
Query: 138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL
Sbjct: 403 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 462
Query: 198 NSWNEGYP 205
N WNE P
Sbjct: 463 NPWNEHKP 470
Score = 39 (18.8 bits), Expect = 1.1e-45, Sum P(2) = 1.1e-45
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 52 RSVEVKKARSAEKVTARPEKPTIRTYD 78
R + + + S E +PEK +R D
Sbjct: 113 RKIRLSSSASREPYKNQPEKTCVRKRD 139
>RGD|621706 [details] [associations]
symbol:Ythdc1 "YTH domain containing 1" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016604 "nuclear body"
evidence=IDA] RGD:621706 GO:GO:0016604 GO:GO:0000398
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 CTD:91746
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
OrthoDB:EOG4ZW5BC EMBL:D78303 EMBL:AF144731 IPI:IPI00196301
IPI:IPI00213467 RefSeq:NP_596914.1 UniGene:Rn.48752
ProteinModelPortal:Q9QY02 SMR:Q9QY02 STRING:Q9QY02
PhosphoSite:Q9QY02 PRIDE:Q9QY02 GeneID:170956 KEGG:rno:170956
UCSC:RGD:621706 InParanoid:Q9QY02 NextBio:621483
ArrayExpress:Q9QY02 Genevestigator:Q9QY02
GermOnline:ENSRNOG00000001996 Uniprot:Q9QY02
Length = 738
Score = 457 (165.9 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 83/128 (64%), Positives = 103/128 (80%)
Query: 78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFS 137
D +K+ + +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R +R+V+LIFS
Sbjct: 346 DQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 405
Query: 138 VRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLY 197
VRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL
Sbjct: 406 VRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLT 465
Query: 198 NSWNEGYP 205
N WNE P
Sbjct: 466 NPWNEHKP 473
Score = 49 (22.3 bits), Expect = 1.3e-45, Sum P(2) = 1.3e-45
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 52 RSVEVKKARSAEKVTARPEKPTIRTYD 78
R + + + S E ++PEKP +R D
Sbjct: 113 RKIRLSSSSSREPYKSQPEKPCLRKRD 139
Score = 40 (19.1 bits), Expect = 1.2e-44, Sum P(2) = 1.2e-44
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 57 KKARSAEKVTARPEKPTIRTYDYITK 82
+K+ E + + +KP+I + I+K
Sbjct: 47 RKSERMESIDTKRQKPSIHSRQLISK 72
>FB|FBgn0027616 [details] [associations]
symbol:YT521-B "YT521-B" species:7227 "Drosophila
melanogaster" [GO:0016604 "nuclear body" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] EMBL:AE014296 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 FlyBase:FBgn0027616 UniGene:Dm.7409 GeneID:38420
KEGG:dme:Dmel_CG12076 CTD:38420 GeneTree:ENSGT00690000102240
GenomeRNAi:38420 NextBio:808571 RefSeq:NP_647811.2
ProteinModelPortal:Q9VZQ1 SMR:Q9VZQ1 IntAct:Q9VZQ1
EnsemblMetazoa:FBtr0073078 UCSC:CG12076-RA InParanoid:Q9VZQ1
OMA:ADYMRNM PhylomeDB:Q9VZQ1 ArrayExpress:Q9VZQ1 Bgee:Q9VZQ1
Uniprot:Q9VZQ1
Length = 721
Score = 477 (173.0 bits), Expect = 4.6e-45, P = 4.6e-45
Identities = 88/157 (56%), Positives = 116/157 (73%)
Query: 51 GRSVEVKKARSAEK--VTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKG 108
GR K+ + EK V + + YDY+TK+NYLFRD RFF+IKSNNS+NV ++K
Sbjct: 213 GRGKPSSKSSTPEKDSVGGGTHSHSQKGYDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKN 272
Query: 109 QGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPG 168
+ VW+TLPQN+ LNQA++E+RNVLLIFSV ESGKF+GFAR+A+ + + V WVLPP
Sbjct: 273 KSVWATLPQNDANLNQAFKEARNVLLIFSVNESGKFAGFARMAAPSRRDIPQVAWVLPPS 332
Query: 169 LSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
+S K L GV ++DW+ RKEL F +TLHL+N+WNEG P
Sbjct: 333 ISPKALGGVIELDWICRKELSFNATLHLHNTWNEGKP 369
>ZFIN|ZDB-GENE-041114-114 [details] [associations]
symbol:ythdc1 "YTH domain containing 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-041114-114 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:91746 HOVERGEN:HBG055528 EMBL:BC085378
IPI:IPI00509525 RefSeq:NP_001007411.1 UniGene:Dr.84175
ProteinModelPortal:Q5U3V6 SMR:Q5U3V6 PRIDE:Q5U3V6 GeneID:492769
KEGG:dre:492769 InParanoid:Q5U3V6 NextBio:20865266 Bgee:Q5U3V6
Uniprot:Q5U3V6
Length = 679
Score = 467 (169.5 bits), Expect = 3.2e-44, P = 3.2e-44
Identities = 91/159 (57%), Positives = 114/159 (71%)
Query: 51 GRSVEVKKARSAEKVTARPEK--PTIRTY--DYITKINYLFRDARFFVIKSNNSENVDIA 106
G SV A + EK ++R D I K+ ++ R+ARFF+IKSNN ENV +A
Sbjct: 256 GESVHSASGSDASGSEKKHEKLSSSVRDVRKDRINKLKHILREARFFLIKSNNHENVSLA 315
Query: 107 KGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLP 166
K +GVWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP
Sbjct: 316 KAKGVWSTLPVNEKKLNAAFRAARSVVLIFSVRESGKFQGFARLSSESHHGGSPIHWVLP 375
Query: 167 PGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
G++ K+L GVFKIDW+ R+ELPFT T HL N WNE P
Sbjct: 376 AGMNAKMLGGVFKIDWICRRELPFTKTAHLANPWNEHKP 414
>UNIPROTKB|F1NS70 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001650 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF04408 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:AADN02056192 EMBL:AADN02056193
IPI:IPI00591470 Ensembl:ENSGALT00000000247 Uniprot:F1NS70
Length = 1339
Score = 275 (101.9 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 55/112 (49%), Positives = 78/112 (69%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS+N +N+DI++ +G+WST P NEQKLN+A+ ES V LIFSV+ SG F GFAR+
Sbjct: 1196 RYFIMKSSNLQNLDISQQKGIWSTTPSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARM 1255
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+SE S W G +G L GVFK++W+ ++ +PF T HL N WN+
Sbjct: 1256 SSEIGCEQSQC-W----GSTG--LGGVFKVEWIRKESIPFQFTHHLLNPWND 1300
>UNIPROTKB|E2QZR7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 GO:GO:0008026
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 OMA:RAFWESS
EMBL:AAEX03007702 Ensembl:ENSCAFT00000000357 Uniprot:E2QZR7
Length = 1376
Score = 263 (97.6 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 52/112 (46%), Positives = 76/112 (67%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R+
Sbjct: 1235 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1294
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+SE S W G +G L GVFK++WV ++ LPF HL N WN+
Sbjct: 1295 SSEIGREKSQ-DW----GSAG--LGGVFKVEWVRKESLPFQFAHHLLNPWND 1339
Score = 36 (17.7 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 61 SAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVD 104
SA++ T +PE RT +T+ L D V ++V+
Sbjct: 416 SAQENTFKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVN 459
>UNIPROTKB|F1RLG0 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002110 InterPro:IPR001650
InterPro:IPR007502 Pfam:PF00271 Pfam:PF04408 PROSITE:PS50088
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00700000104393
InterPro:IPR011709 Pfam:PF07717 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:CU462841
Ensembl:ENSSSCT00000015529 Uniprot:F1RLG0
Length = 1151
Score = 262 (97.3 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 51/112 (45%), Positives = 76/112 (67%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R+
Sbjct: 1010 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1069
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+SE S W G +G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 1070 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1114
>UNIPROTKB|F1MNU7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:64848 OMA:RAFWESS EMBL:DAAA02027655
IPI:IPI00689346 RefSeq:NP_001179740.1 UniGene:Bt.24975
ProteinModelPortal:F1MNU7 Ensembl:ENSBTAT00000018745 GeneID:541024
KEGG:bta:541024 NextBio:20878969 Uniprot:F1MNU7
Length = 1429
Score = 262 (97.3 bits), Expect = 4.1e-21, P = 4.1e-21
Identities = 51/112 (45%), Positives = 76/112 (67%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R+
Sbjct: 1288 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1347
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+SE S W G +G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 1348 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1392
>MGI|MGI:2448561 [details] [associations]
symbol:Ythdc2 "YTH domain containing 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
MGI:MGI:2448561 GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683
Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
GeneTree:ENSGT00700000104393 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
CTD:64848 HOGENOM:HOG000155703 OMA:RAFWESS OrthoDB:EOG4JWVCN
EMBL:BC138263 EMBL:BC171951 IPI:IPI00343249 RefSeq:NP_001156485.1
UniGene:Mm.244482 ProteinModelPortal:B2RR83 SMR:B2RR83
PhosphoSite:B2RR83 PaxDb:B2RR83 PRIDE:B2RR83
Ensembl:ENSMUST00000037763 GeneID:240255 KEGG:mmu:240255
UCSC:uc008evb.2 InParanoid:B2RR83 ChiTaRS:YTHDC2 NextBio:384522
Bgee:B2RR83 Genevestigator:B2RR83 Uniprot:B2RR83
Length = 1445
Score = 262 (97.3 bits), Expect = 4.2e-21, P = 4.2e-21
Identities = 51/112 (45%), Positives = 76/112 (67%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R+
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRM 1363
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+SE S W G +G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 1364 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1408
>UNIPROTKB|Q9H6S0 [details] [associations]
symbol:YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AC093208 EMBL:AC010389 EMBL:BC137285
EMBL:AK025593 IPI:IPI00010200 RefSeq:NP_073739.3 UniGene:Hs.231942
PDB:2YU6 PDBsum:2YU6 ProteinModelPortal:Q9H6S0 SMR:Q9H6S0
IntAct:Q9H6S0 PhosphoSite:Q9H6S0 DMDM:239938805 PaxDb:Q9H6S0
PeptideAtlas:Q9H6S0 PRIDE:Q9H6S0 Ensembl:ENST00000161863
GeneID:64848 KEGG:hsa:64848 UCSC:uc003kqn.3 CTD:64848
GeneCards:GC05P112877 HGNC:HGNC:24721 HPA:HPA037364
neXtProt:NX_Q9H6S0 PharmGKB:PA134912676 HOGENOM:HOG000155703
HOVERGEN:HBG063891 InParanoid:Q9H6S0 OMA:RAFWESS OrthoDB:EOG4JWVCN
PhylomeDB:Q9H6S0 EvolutionaryTrace:Q9H6S0 GenomeRNAi:64848
NextBio:66962 ArrayExpress:Q9H6S0 Bgee:Q9H6S0 CleanEx:HS_YTHDC2
Genevestigator:Q9H6S0 GermOnline:ENSG00000047188 Uniprot:Q9H6S0
Length = 1430
Score = 261 (96.9 bits), Expect = 5.2e-21, P = 5.2e-21
Identities = 51/112 (45%), Positives = 76/112 (67%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R+
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRM 1348
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+SE S W G +G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 1349 SSEIGREKSQ-DW----GSAG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1393
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 207 (77.9 bits), Expect = 9.0e-16, P = 9.0e-16
Identities = 45/115 (39%), Positives = 63/115 (54%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+FV+KSNN EN +++ QGVW+T NE KLN+A+ NV+LIFSV + F G A++
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSVNRTRHFQGCAKM 297
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
S + W G + N F + W+ EL F T +L N +NE P
Sbjct: 298 TSRIGGYIGGGNWKHEHGTAQYGRN--FSVKWLKLCELSFHKTRNLRNPYNENLP 350
>TAIR|locus:2118046 [details] [associations]
symbol:AT4G11970 "AT4G11970" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48848 UniGene:At.68491 IPI:IPI00541281
RefSeq:NP_192934.2 ProteinModelPortal:F4JPV2 SMR:F4JPV2
PRIDE:F4JPV2 EnsemblPlants:AT4G11970.1 GeneID:826804
KEGG:ath:AT4G11970 OMA:GIWATQV PhylomeDB:F4JPV2 Uniprot:F4JPV2
Length = 444
Score = 192 (72.6 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 43/115 (37%), Positives = 62/115 (53%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F+IKS N +N+ ++ +G+W+T NE L A+ +S V+LIFSV SG F G+A +
Sbjct: 73 RYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIFSVNMSGFFQGYAEM 132
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
S + W G + FK+ W+ ELPF TLHL N N+ P
Sbjct: 133 LSPVGWRRDQI-WSQGGGKNNP-WGRSFKVKWLRLSELPFQKTLHLKNPLNDYKP 185
>ASPGD|ASPL0000015049 [details] [associations]
symbol:AN10537 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
EnsemblFungi:CADANIAT00004356 HOGENOM:HOG000179786 Uniprot:C8V3R8
Length = 630
Score = 142 (55.0 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 24/62 (38%), Positives = 43/62 (69%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
R+F++KS E+++++ G+W+T NE+ LN+A+ + NV L FS +SG++ G+AR+
Sbjct: 420 RYFILKSLTVEDLELSWQSGIWATQTHNEESLNRAFENADNVYLFFSANKSGEYYGYARM 479
Query: 151 AS 152
S
Sbjct: 480 MS 481
Score = 63 (27.2 bits), Expect = 5.5e-13, Sum P(2) = 5.5e-13
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 146 GFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWN 201
G R A H + + P L +++ F+I W+S + +PF T L N WN
Sbjct: 545 GLPRQHKNAYHPPNEQQSQAPAEL--QLIGKPFRIRWLSTERVPFHRTRGLRNPWN 598
>TAIR|locus:2159391 [details] [associations]
symbol:ECT3 "AT5G61020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=RCA] EMBL:CP002688
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 IPI:IPI00547508
RefSeq:NP_851236.1 UniGene:At.21835 UniGene:At.70904 PRIDE:F4K1Z0
EnsemblPlants:AT5G61020.1 GeneID:836223 KEGG:ath:AT5G61020
OMA:HASKTCI Uniprot:F4K1Z0
Length = 495
Score = 158 (60.7 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 45/164 (27%), Positives = 77/164 (46%)
Query: 50 KGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINY--LFRDARFFVIKSNNSENVDIAK 107
K +V +K+ R E + + DY KI++ + +A+F+VIKS + +++ +
Sbjct: 220 KVMAVSLKEQRVTETEKLSEDVSLLDPKDY-NKIDFPETYTEAKFYVIKSYSEDDIHKSI 278
Query: 108 GQGVWSTLPQNEQKLNQAYRESRN------VLLIFSVRESGKFSGFARLASEADHGVSPV 161
VWS+ P +KL+ +Y E++ V L+FSV SG+F G A + D +
Sbjct: 279 KYSVWSSTPNGNKKLDASYNEAKQKSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVE 338
Query: 162 KWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
W + G F + W K++P +S H+ NE P
Sbjct: 339 YWQQDKWI------GCFPVKWHFVKDIPNSSLRHITLENNENKP 376
>TAIR|locus:2010494 [details] [associations]
symbol:ECT9 "AT1G27960" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016571 "histone methylation" evidence=RCA]
EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 EMBL:BT022109 IPI:IPI00540009 RefSeq:NP_174117.2
UniGene:At.40970 ProteinModelPortal:Q500V8 SMR:Q500V8
EnsemblPlants:AT1G27960.1 GeneID:839689 KEGG:ath:AT1G27960
TAIR:At1g27960 InParanoid:Q500V8 OMA:DIFISCE PhylomeDB:Q500V8
ProtClustDB:CLSN2918485 Genevestigator:Q500V8 Uniprot:Q500V8
Length = 539
Score = 154 (59.3 bits), Expect = 3.5e-10, P = 3.5e-10
Identities = 40/125 (32%), Positives = 61/125 (48%)
Query: 87 FRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN------VLLIFSVRE 140
FRDA+FFVIKS + +NV + VW++ +KL+ AYRE++ V L+FSV
Sbjct: 327 FRDAKFFVIKSYSEDNVHKSIKHCVWASTKNGNKKLDAAYREAKKKDVACPVFLLFSVNA 386
Query: 141 SGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSW 200
S +F G A + D S W +G F + W+ K++P + H+
Sbjct: 387 SSQFCGVAEMVGPVDFNTSVEYW------QQDRWSGHFPVQWLIVKDVPNSLFRHIIIES 440
Query: 201 NEGYP 205
N+ P
Sbjct: 441 NDNKP 445
>TAIR|locus:2095938 [details] [associations]
symbol:ECT1 "evolutionarily conserved C-terminal region
1" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019722 "calcium-mediated signaling" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] GO:GO:0005634 EMBL:CP002686 GO:GO:0019722
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
HOGENOM:HOG000238171 EMBL:AY894117 EMBL:AK317103 IPI:IPI00657449
RefSeq:NP_001030629.1 UniGene:At.27388 SMR:Q3MK94 IntAct:Q3MK94
EnsemblPlants:AT3G03950.3 GeneID:819550 KEGG:ath:AT3G03950
TAIR:At3g03950 eggNOG:NOG299038 OMA:YYEAKEN ProtClustDB:CLSN2688051
Genevestigator:Q3MK94 Uniprot:Q3MK94
Length = 428
Score = 147 (56.8 bits), Expect = 1.3e-09, P = 1.3e-09
Identities = 40/125 (32%), Positives = 59/125 (47%)
Query: 87 FRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN------VLLIFSVRE 140
F A+FFVIKS + ++V G WS+ P +KLN AY E++ V L+FSV
Sbjct: 242 FVKAKFFVIKSYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNA 301
Query: 141 SGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSW 200
SG+F G A + D + W + G F + W K++P + H+ +
Sbjct: 302 SGQFVGLAEMVGPVDFNKTMEYWQQDKWI------GCFPVKWHIIKDIPNSLLRHITLAN 355
Query: 201 NEGYP 205
NE P
Sbjct: 356 NENKP 360
>MGI|MGI:1917431 [details] [associations]
symbol:Ythdf1 "YTH domain family 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1917431 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
EMBL:AK046768 EMBL:AK172582 EMBL:BC061479 EMBL:BC065050
IPI:IPI00187444 RefSeq:NP_776122.1 UniGene:Mm.30205
ProteinModelPortal:P59326 SMR:P59326 STRING:P59326
PhosphoSite:P59326 PaxDb:P59326 PRIDE:P59326
Ensembl:ENSMUST00000037299 GeneID:228994 KEGG:mmu:228994 CTD:54915
HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
ChiTaRS:YTHDF1 NextBio:379293 Bgee:P59326 CleanEx:MM_YTHDF1
Genevestigator:P59326 GermOnline:ENSMUSG00000038848 Uniprot:P59326
Length = 559
Score = 141 (54.7 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 41/158 (25%), Positives = 71/158 (44%)
Query: 53 SVEVKKARSAEKVTARPEKPTIRT-YDYITK-INYLFRDARFFVIKSNNSENVDIAKGQG 110
SV + SA V + P ++ + Y K ++ + R F+IKS + +++ +
Sbjct: 350 SVGNAQPTSAPSVESHPVLEKLKAAHSYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYS 409
Query: 111 VWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPP 167
+W + ++L+ A+R + V L+FSV SG F G A + S D+G S W
Sbjct: 410 IWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSGHFCGVAEMKSPVDYGTSAGVW---- 465
Query: 168 GLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
S G F + W+ K++P H+ N+ P
Sbjct: 466 --SQDKWKGKFDVKWIFVKDVPNNQLRHIRLENNDNKP 501
>ZFIN|ZDB-GENE-040426-2786 [details] [associations]
symbol:ythdf1 "YTH domain family, member 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-040426-2786 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
CTD:54915 HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
EMBL:BX649575 EMBL:CR759927 EMBL:BC046885 IPI:IPI00501109
RefSeq:NP_997878.1 UniGene:Dr.116333 Ensembl:ENSDART00000025171
GeneID:327606 KEGG:dre:327606 InParanoid:Q802Z0 OMA:PSMTDPY
NextBio:20810106 Uniprot:Q802Z0
Length = 614
Score = 140 (54.3 bits), Expect = 5.5e-08, P = 5.5e-08
Identities = 38/146 (26%), Positives = 68/146 (46%)
Query: 65 VTARPEKPTIRT-YDYITK-INYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKL 122
+ + P +R + Y K ++ ++ R F+IKS + +++ + +W + ++L
Sbjct: 402 IESHPVLEKLRAAHSYNPKEFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRL 461
Query: 123 NQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFK 179
+ A+R V L+FSV SG F G A + S D+G S W K G F
Sbjct: 462 DSAFRAINGKGPVYLLFSVNGSGHFCGVAEMRSPVDYGTSAGVWA-----QDK-WKGKFD 515
Query: 180 IDWVSRKELPFTSTLHLYNSWNEGYP 205
+DW+ K++P + H+ N+ P
Sbjct: 516 VDWLFVKDVPNSQLRHIRLENNDNKP 541
>TAIR|locus:2161213 [details] [associations]
symbol:ECT10 "evolutionarily conserved C-terminal region
10" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM] EMBL:CP002688 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 IPI:IPI00522420 RefSeq:NP_974954.1 UniGene:At.28271
UniGene:At.29291 ProteinModelPortal:F4KDJ9 SMR:F4KDJ9 PRIDE:F4KDJ9
EnsemblPlants:AT5G58190.2 GeneID:835931 KEGG:ath:AT5G58190
OMA:RFCHILL PhylomeDB:F4KDJ9 Uniprot:F4KDJ9
Length = 528
Score = 139 (54.0 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 38/152 (25%), Positives = 72/152 (47%)
Query: 61 SAEKVTARPEKPTIRTY-DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNE 119
+++ TA P P++ + +++T +++A+FF++KS + +NV + VW++ P
Sbjct: 300 ASDSSTAGPN-PSLYNHPEFVTD----YKNAKFFIVKSFSEDNVHRSIKYNVWASTPHGN 354
Query: 120 QKLNQAYRESRN------VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKV 173
+KL+ AYR++ + L FSV SG+F G + + D W
Sbjct: 355 KKLDTAYRDAEKMGGKCPIFLFFSVNASGQFCGVSEMVGPVDFEKDAGYW------QQDR 408
Query: 174 LNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
+G F + W K++P H+ N+ P
Sbjct: 409 WSGQFPVKWHIVKDIPNNRFCHILLQNNDNKP 440
>TAIR|locus:2089280 [details] [associations]
symbol:ECT5 "AT3G13060" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=IDA] GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR InterPro:IPR007275
Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347 EMBL:AK228498
IPI:IPI00526241 RefSeq:NP_187912.2 UniGene:At.39501
UniGene:At.47843 ProteinModelPortal:Q0WR25 SMR:Q0WR25 PaxDb:Q0WR25
PRIDE:Q0WR25 EnsemblPlants:AT3G13060.2 GeneID:820492
KEGG:ath:AT3G13060 TAIR:At3g13060 HOGENOM:HOG000238171
InParanoid:Q0WR25 OMA:HITKSFA PhylomeDB:Q0WR25
ProtClustDB:CLSN2690899 Genevestigator:Q0WR25 Uniprot:Q0WR25
Length = 634
Score = 135 (52.6 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 38/134 (28%), Positives = 65/134 (48%)
Query: 78 DYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN------ 131
D++T + +A+ F+IKS + +NV + VW++ P +KL+ AYRE+++
Sbjct: 390 DFVTD----YTNAKLFIIKSYSEDNVHKSIKYNVWASTPNGNKKLDAAYREAKDEKEPCP 445
Query: 132 VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFT 191
+ L+FSV S +F G A + D S W K +G F + W K++P +
Sbjct: 446 LFLLFSVNASSQFCGVAEMVGPVDFEKSVDYWQ-----QDK-WSGQFPVKWHIIKDVPNS 499
Query: 192 STLHLYNSWNEGYP 205
H+ N+ P
Sbjct: 500 QFRHIILENNDNKP 513
>TAIR|locus:2092815 [details] [associations]
symbol:ECT2 "evolutionarily conserved C-terminal region
2" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 EMBL:AP000603
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:AY123992
IPI:IPI00538679 RefSeq:NP_187955.2 UniGene:At.23650
UniGene:At.67751 ProteinModelPortal:Q9LJE5 SMR:Q9LJE5 STRING:Q9LJE5
PRIDE:Q9LJE5 ProMEX:Q9LJE5 EnsemblPlants:AT3G13460.1 GeneID:820548
KEGG:ath:AT3G13460 TAIR:At3g13460 InParanoid:Q9LJE5 OMA:DSRTNGR
PhylomeDB:Q9LJE5 ProtClustDB:CLSN2690909 Genevestigator:Q9LJE5
Uniprot:Q9LJE5
Length = 667
Score = 134 (52.2 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 43/161 (26%), Positives = 71/161 (44%)
Query: 51 GRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQG 110
G S V + A+ P++ D+ ++Y +A FF+IKS + ++V +
Sbjct: 408 GES-NVTEVGEADNTCVVPDREQYNKEDF--PVDYA--NAMFFIIKSYSEDDVHKSIKYN 462
Query: 111 VWSTLPQNEQKLNQAYRESRN------VLLIFSVRESGKFSGFARLASEADHGVSPVKWV 164
VW++ P +KL AY+E++ + L FSV SG+F G A + D + W
Sbjct: 463 VWASTPNGNKKLAAAYQEAQQKAGGCPIFLFFSVNASGQFVGLAEMTGPVDFNTNVEYWQ 522
Query: 165 LPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
K G F + W K++P + H+ NE P
Sbjct: 523 -----QDK-WTGSFPLKWHIVKDVPNSLLKHITLENNENKP 557
>CGD|CAL0002569 [details] [associations]
symbol:orf19.1939 species:5476 "Candida albicans" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 128 (50.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 42/152 (27%), Positives = 68/152 (44%)
Query: 54 VEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWS 113
+ A S + P T RTY I + + ++FFVIKS N +V+ + +W+
Sbjct: 182 INANAAVSGSAYSPPPSCLTFRTYT--GAIFTVPKTSKFFVIKSYNILDVNASFIHNIWT 239
Query: 114 TLPQNEQKLNQAYRE---SRN------VLLIFSVRESGKFSGFARLASEADHGVSPVKWV 164
+ ++L++AY E + N + L FSV SGKF G A + S D + W
Sbjct: 240 STELGNRRLDKAYTELSKTNNPDVDGKIFLFFSVNSSGKFCGIAEMKSAIDFTTASNIWC 299
Query: 165 LPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
G+F ++W+ K++P HL
Sbjct: 300 -----EQTRWKGIFPVEWLLIKDVPNKFFQHL 326
>UNIPROTKB|Q5A1Q7 [details] [associations]
symbol:CaO19.1939 "Putative uncharacterized protein"
species:237561 "Candida albicans SC5314" [GO:0003674
"molecular_function" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
CGD:CAL0002569 EMBL:AACQ01000082 EMBL:AACQ01000081
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 eggNOG:NOG276347
RefSeq:XP_715645.1 RefSeq:XP_715702.1 ProteinModelPortal:Q5A1Q7
GeneID:3642646 GeneID:3642692 KEGG:cal:CaO19.1939
KEGG:cal:CaO19.9494 Uniprot:Q5A1Q7
Length = 364
Score = 128 (50.1 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 42/152 (27%), Positives = 68/152 (44%)
Query: 54 VEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWS 113
+ A S + P T RTY I + + ++FFVIKS N +V+ + +W+
Sbjct: 182 INANAAVSGSAYSPPPSCLTFRTYT--GAIFTVPKTSKFFVIKSYNILDVNASFIHNIWT 239
Query: 114 TLPQNEQKLNQAYRE---SRN------VLLIFSVRESGKFSGFARLASEADHGVSPVKWV 164
+ ++L++AY E + N + L FSV SGKF G A + S D + W
Sbjct: 240 STELGNRRLDKAYTELSKTNNPDVDGKIFLFFSVNSSGKFCGIAEMKSAIDFTTASNIWC 299
Query: 165 LPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
G+F ++W+ K++P HL
Sbjct: 300 -----EQTRWKGIFPVEWLLIKDVPNKFFQHL 326
>TAIR|locus:2207405 [details] [associations]
symbol:ECT8 "AT1G79270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009805 "coumarin biosynthetic process" evidence=RCA]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=RCA] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AF326910 EMBL:AY113874 IPI:IPI00530579
RefSeq:NP_565205.1 UniGene:At.25521 UniGene:At.48393
ProteinModelPortal:Q9FPE7 SMR:Q9FPE7 IntAct:Q9FPE7 STRING:Q9FPE7
PRIDE:Q9FPE7 EnsemblPlants:AT1G79270.1 GeneID:844267
KEGG:ath:AT1G79270 TAIR:At1g79270 InParanoid:Q9FPE7 OMA:TNGECES
PhylomeDB:Q9FPE7 ProtClustDB:CLSN2917492 ArrayExpress:Q9FPE7
Genevestigator:Q9FPE7 Uniprot:Q9FPE7
Length = 528
Score = 127 (49.8 bits), Expect = 5.7e-06, P = 5.7e-06
Identities = 39/129 (30%), Positives = 58/129 (44%)
Query: 87 FRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN----------VLLIF 136
+ +A FFVIKS + +++ + VWS+ +KL+ AY+ES+ V L F
Sbjct: 318 YEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQKKAADKSGKCPVFLFF 377
Query: 137 SVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
SV SG+F G A + D+ S W K G F + W K++P H+
Sbjct: 378 SVNASGQFCGVAEMIGRVDYEKSMEFWQ-----QDK-WTGYFPVKWHIIKDVPNPQLRHI 431
Query: 197 YNSWNEGYP 205
NE P
Sbjct: 432 ILENNENKP 440
>UNIPROTKB|Q9Y5A9 [details] [associations]
symbol:YTHDF2 "YTH domain family protein 2" species:9606
"Homo sapiens" [GO:0006959 "humoral immune response" evidence=TAS]
EMBL:CH471059 GO:GO:0006959 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AL645729 eggNOG:NOG276347 HOVERGEN:HBG060315
EMBL:AF155095 EMBL:AF192968 EMBL:AF432214 EMBL:AK292581
EMBL:AK303833 EMBL:AL356786 EMBL:BC002559 IPI:IPI00306043
IPI:IPI00397024 RefSeq:NP_001166299.1 RefSeq:NP_001166599.1
RefSeq:NP_057342.2 UniGene:Hs.532286 ProteinModelPortal:Q9Y5A9
SMR:Q9Y5A9 IntAct:Q9Y5A9 STRING:Q9Y5A9 PhosphoSite:Q9Y5A9
DMDM:41019527 PaxDb:Q9Y5A9 PRIDE:Q9Y5A9 DNASU:51441
Ensembl:ENST00000373812 Ensembl:ENST00000541996
Ensembl:ENST00000542507 GeneID:51441 KEGG:hsa:51441 UCSC:uc001brc.3
CTD:51441 GeneCards:GC01P029063 HGNC:HGNC:31675 MIM:610640
neXtProt:NX_Q9Y5A9 PharmGKB:PA134964518 InParanoid:Q9Y5A9
OMA:SVPKVVG OrthoDB:EOG4001J0 PhylomeDB:Q9Y5A9 GenomeRNAi:51441
NextBio:55027 PMAP-CutDB:Q9Y5A9 ArrayExpress:Q9Y5A9 Bgee:Q9Y5A9
CleanEx:HS_YTHDF2 Genevestigator:Q9Y5A9 GermOnline:ENSG00000198492
Uniprot:Q9Y5A9
Length = 579
Score = 127 (49.8 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 33/121 (27%), Positives = 54/121 (44%)
Query: 88 RDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKF 144
+ R F+IKS + +++ + +W + ++L+ AYR V L+FSV SG F
Sbjct: 408 KHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHF 467
Query: 145 SGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGY 204
G A + S D+ W S G F + W+ K++P + H+ NE
Sbjct: 468 CGVAEMKSAVDYNTCAGVW------SQDKWKGRFDVRWIFVKDVPNSQLRHIRLENNENK 521
Query: 205 P 205
P
Sbjct: 522 P 522
>SGD|S000002782 [details] [associations]
symbol:YDR374C "Putative protein of unknown function"
species:4932 "Saccharomyces cerevisiae" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
SGD:S000002782 EMBL:BK006938 EMBL:U28373 KO:K02139
RefSeq:NP_010665.3 GeneID:851983 KEGG:sce:YDR377W
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 RefSeq:NP_010662.3
GeneID:851980 KEGG:sce:YDR374C PIR:S61169 ProteinModelPortal:Q06390
SMR:Q06390 DIP:DIP-5677N IntAct:Q06390 MINT:MINT-514883
STRING:Q06390 EnsemblFungi:YDR374C CYGD:YDR374c eggNOG:NOG276347
GeneTree:ENSGT00390000017549 HOGENOM:HOG000001065 OrthoDB:EOG4K9FMS
NextBio:970124 Genevestigator:Q06390 GermOnline:YDR374C
Uniprot:Q06390
Length = 306
Score = 122 (48.0 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 31/103 (30%), Positives = 56/103 (54%)
Query: 89 DARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFS 145
++RFFVIKS++ ++V + G+WS+ ++L++AY++ + V L FS+ SG+F
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYKKLNSGAKVFLFFSINTSGRFC 213
Query: 146 GFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKEL 188
G A + S+ + W GK FK+ WV +++
Sbjct: 214 GVAEMVSDLKMDLDTSIWE-DEQKYGKA----FKVRWVIVRDI 251
>UNIPROTKB|Q7Z739 [details] [associations]
symbol:YTHDF3 "YTH domain family protein 3" species:9606
"Homo sapiens" [GO:0005515 "protein binding" evidence=IPI]
EMBL:CH471068 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 HOVERGEN:HBG060315 EMBL:AK127574 EMBL:AL832005
EMBL:BX537996 EMBL:BC052970 IPI:IPI00396131 RefSeq:NP_689971.4
UniGene:Hs.491861 ProteinModelPortal:Q7Z739 SMR:Q7Z739
IntAct:Q7Z739 STRING:Q7Z739 PhosphoSite:Q7Z739 DMDM:74738853
PaxDb:Q7Z739 PRIDE:Q7Z739 DNASU:253943 GeneID:253943
KEGG:hsa:253943 UCSC:uc003xuy.3 CTD:253943 GeneCards:GC08P064081
HGNC:HGNC:26465 neXtProt:NX_Q7Z739 PharmGKB:PA134976395
InParanoid:Q7Z739 OrthoDB:EOG4RR6H8 GenomeRNAi:253943 NextBio:92198
PMAP-CutDB:Q7Z739 CleanEx:HS_YTHDF3 Genevestigator:Q7Z739
Uniprot:Q7Z739
Length = 585
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/155 (23%), Positives = 67/155 (43%)
Query: 56 VKKARSAEKVTARPEKPTIRTYD-YITK-INYLFRDARFFVIKSNNSENVDIAKGQGVWS 113
V + S V P ++ + Y K ++ ++ R F+IKS + +++ + +W
Sbjct: 380 VPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWC 439
Query: 114 TLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLS 170
+ ++L+ AYR + L+FSV SG F G A + S D+ W S
Sbjct: 440 STEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW------S 493
Query: 171 GKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
G F++ W+ K++P H+ N+ P
Sbjct: 494 QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKP 528
>MGI|MGI:1918850 [details] [associations]
symbol:Ythdf3 "YTH domain family 3" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1918850 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
HOGENOM:HOG000232058 HOVERGEN:HBG060315 CTD:253943
OrthoDB:EOG4RR6H8 EMBL:AK137245 EMBL:AK039176 EMBL:AK053736
EMBL:BC057158 EMBL:BC067040 EMBL:BC067042 IPI:IPI00227149
IPI:IPI00465894 IPI:IPI00742314 RefSeq:NP_001139391.1
RefSeq:NP_766265.3 UniGene:Mm.23834 ProteinModelPortal:Q8BYK6
SMR:Q8BYK6 STRING:Q8BYK6 PhosphoSite:Q8BYK6 PaxDb:Q8BYK6
PRIDE:Q8BYK6 Ensembl:ENSMUST00000108345 Ensembl:ENSMUST00000108346
GeneID:229096 KEGG:mmu:229096 UCSC:uc008org.2 UCSC:uc008orh.2
UCSC:uc008ori.2 OMA:STGMTSI ChiTaRS:YTHDF3 NextBio:379337
Bgee:Q8BYK6 CleanEx:MM_YTHDF3 Genevestigator:Q8BYK6 Uniprot:Q8BYK6
Length = 585
Score = 125 (49.1 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 37/155 (23%), Positives = 67/155 (43%)
Query: 56 VKKARSAEKVTARPEKPTIRTYD-YITK-INYLFRDARFFVIKSNNSENVDIAKGQGVWS 113
V + S V P ++ + Y K ++ ++ R F+IKS + +++ + +W
Sbjct: 380 VPVSASPSSVEVHPVLEKLKAINNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWC 439
Query: 114 TLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLS 170
+ ++L+ AYR + L+FSV SG F G A + S D+ W S
Sbjct: 440 STEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW------S 493
Query: 171 GKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
G F++ W+ K++P H+ N+ P
Sbjct: 494 QDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKP 528
>TAIR|locus:2024286 [details] [associations]
symbol:ECT11 "AT1G09810" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK221696 EMBL:AK226991 IPI:IPI00570420
RefSeq:NP_172452.3 UniGene:At.42210 ProteinModelPortal:Q56XH8
SMR:Q56XH8 PRIDE:Q56XH8 EnsemblPlants:AT1G09810.1 GeneID:837511
KEGG:ath:AT1G09810 TAIR:At1g09810 HOGENOM:HOG000137356
InParanoid:Q56XH8 OMA:WSSTING PhylomeDB:Q56XH8
ProtClustDB:CLSN2920224 Genevestigator:Q56XH8 Uniprot:Q56XH8
Length = 470
Score = 120 (47.3 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 36/129 (27%), Positives = 58/129 (44%)
Query: 87 FRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRES----------RNVLLIF 136
+ DA+FFVIKS + ++V + VWS+ +KL+ A+R++ R + L F
Sbjct: 228 YEDAKFFVIKSYSEDDVHKSIKYSVWSSTINGNKKLDAAFRDAETKTLEDGKKRPIFLFF 287
Query: 137 SVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
SV S +F G A + D W + +G F ++W K++P H+
Sbjct: 288 SVNASRQFVGLAEMVGYVDFNKDLDFWQVDKW------SGFFPVEWHVVKDIPNWELRHI 341
Query: 197 YNSWNEGYP 205
NE P
Sbjct: 342 ILDNNEDKP 350
>TAIR|locus:2088995 [details] [associations]
symbol:ECT6 "AT3G17330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] EMBL:CP002686
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 EMBL:BT025338
IPI:IPI00522737 RefSeq:NP_188359.2 UniGene:At.38744
ProteinModelPortal:Q1JPL5 SMR:Q1JPL5 PRIDE:Q1JPL5
EnsemblPlants:AT3G17330.1 GeneID:820996 KEGG:ath:AT3G17330
TAIR:At3g17330 InParanoid:Q1JPL5 OMA:RECPIFL PhylomeDB:Q1JPL5
ProtClustDB:CLSN2682185 Genevestigator:Q1JPL5 Uniprot:Q1JPL5
Length = 595
Score = 117 (46.2 bits), Expect = 0.00013, P = 0.00013
Identities = 44/168 (26%), Positives = 70/168 (41%)
Query: 50 KGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYL--FRDARFFVIKSNNSENVDIAK 107
+ R+ + KA + + A E + D K ++ + DARFFVIKS + ++V +
Sbjct: 228 RSRNQLIVKAYTTKAGNADAEGNIVINPDRYNKEDFSIEYSDARFFVIKSYSEDDVHKSI 287
Query: 108 GQGVWSTLPQNEQKLNQAYRESRNV----------LLIFSVRESGKFSGFARLASEADHG 157
GVWS+ +KL Y +++ + L FSV SG F G A +
Sbjct: 288 KYGVWSSTLNGNKKLQSVYEDAQRIATEKSRECPIFLFFSVNSSGLFCGVAEMTGPVSFD 347
Query: 158 VSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
W K +G F + W K++P + H+ NE P
Sbjct: 348 RDMDFWQ-----QDK-WSGSFPVKWHIIKDVPNSYFRHIILHNNENKP 389
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.134 0.401 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 222 194 0.00076 111 3 11 22 0.50 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 30
No. of states in DFA: 599 (64 KB)
Total size of DFA: 175 KB (2102 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 19.23u 0.09s 19.32t Elapsed: 00:00:11
Total cpu time: 19.23u 0.09s 19.32t Elapsed: 00:00:12
Start: Thu Aug 15 10:58:30 2013 End: Thu Aug 15 10:58:42 2013