RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8690
(222 letters)
>gnl|CDD|217926 pfam04146, YTH, YT521-B-like domain. A protein of the YTH family
has been shown to selectively remove transcripts of
meiosis-specific genes expressed in mitotic cells. It
has been speculated that in higher eukaryotic YTH-family
members may be involved in similar mechanisms to
suppress gene regulation during gametogenesis or general
silencing. The rat protein YT521-B is a
tyrosine-phosphorylated nuclear protein, that interacts
with the nuclear transcriptosomal component scaffold
attachment factor B, and the 68-kDa Src substrate
associated during mitosis, Sam68. In vivo splicing
assays demonstrated that YT521-B modulates alternative
splice site selection in a concentration-dependent
manner. The YTH domain has been identified as part of
the PUA superfamily.
Length = 135
Score = 138 bits (349), Expect = 1e-41
Identities = 49/115 (42%), Positives = 69/115 (60%), Gaps = 4/115 (3%)
Query: 91 RFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARL 150
RFF+IKS N +NV ++ GVW++ N +KLN+A++E+ V LIFSV +SGKF G+AR+
Sbjct: 1 RFFIIKSYNEDNVHLSIKYGVWASTSHNNKKLNKAFKEAEPVYLIFSVNKSGKFCGYARM 60
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
S D + S + G FK++W+S K+LPF HL N NE P
Sbjct: 61 TSPIDFDSTANSQ----DSSSQKWGGPFKVEWLSVKDLPFHRLRHLKNPNNENKP 111
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 32.8 bits (75), Expect = 0.11
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 5 EMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVD 48
+ E+ + K K + + +S +D S S SD D+SD S D
Sbjct: 99 DDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSED 142
Score = 30.1 bits (68), Expect = 0.69
Identities = 14/22 (63%), Positives = 15/22 (68%)
Query: 22 DSSSDSSSSDSDDDNSDSSVST 43
DSSSDS SSD D D+ DS T
Sbjct: 123 DSSSDSDSSDDDSDDDDSEDET 144
Score = 28.5 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 4 VEMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSS 45
E ++IK K + ++D+ SSSDSD + DS S
Sbjct: 100 DEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSE 141
>gnl|CDD|185600 PTZ00410, PTZ00410, NAD-dependent SIR2; Provisional.
Length = 349
Score = 31.0 bits (70), Expect = 0.41
Identities = 16/37 (43%), Positives = 18/37 (48%)
Query: 16 LPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGR 52
L FH DS + S S S S STSSS D G+
Sbjct: 254 LTTFHADSVAKEGRSSSSSSRSSSDSSTSSSSDGYGQ 290
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 31.1 bits (70), Expect = 0.50
Identities = 17/74 (22%), Positives = 29/74 (39%)
Query: 5 EMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEK 64
+ K K K +DS S S DSD D DS ++ + + E + +
Sbjct: 338 GKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGEDSVSLVTAKKQKEPKKEEPVDSNPSSP 397
Query: 65 VTARPEKPTIRTYD 78
+ P +P+ + D
Sbjct: 398 GNSGPARPSPESKD 411
>gnl|CDD|221346 pfam11967, RecO_N, Recombination protein O N terminal.
Recombination protein O (RecO) is involved in DNA repair
and pfam00470 pathway recombination. This domain forms a
beta barrel structure.
Length = 80
Score = 28.7 bits (65), Expect = 0.72
Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 124 QAYRESRNVLLIFSVRESGKFSGFAR 149
+ Y ES ++ +F+ RE GK SG AR
Sbjct: 14 RDYGESDKIVTLFT-REHGKISGVAR 38
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 30.0 bits (67), Expect = 0.85
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 7 EDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVT 66
E K K KDL K+ S +S ++++S+S D+KG+ + K + + +
Sbjct: 222 EKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAKK--S 279
Query: 67 ARPE 70
+P
Sbjct: 280 RKPH 283
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated
C-terminal domain. This domain is found in a number of
different types of plant proteins including NAM-like
proteins.
Length = 147
Score = 29.3 bits (66), Expect = 0.97
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 10/58 (17%)
Query: 12 KLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDH----------KGRSVEVKKA 59
LK+ PK+ + S +S S+SS ++S+ ++ R KKA
Sbjct: 11 ILKNEPKWKSKRSELKKASKKKKKRSNSSPGSTSNEENEDEDDESTAESKRPEGRKKA 68
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 29.7 bits (66), Expect = 1.3
Identities = 31/137 (22%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 21 NDSSSDSSSSDSDDDNSDSSV--STSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRTYD 78
SSSD S S S S+ S+S D A A V A E P +
Sbjct: 143 LASSSDGKSKASAKSGSKSASKHGESNSSDESATDSGKASASVAGIVGADEEAPPAPK-N 201
Query: 79 YITKINYLF-RDARFFVIK---SNNSENVDIAKGQGVW------STLPQNEQKLNQAYRE 128
+T + L+ + F +K E +DI K G L + ++ + +E
Sbjct: 202 TLTPLEELYETNVNLFALKHPLEKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKE 261
Query: 129 SRNVLLIFSVRESGKFS 145
+ + E KF
Sbjct: 262 ALEKIGAEGDEEKFKFD 278
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 29.6 bits (67), Expect = 1.4
Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 1/67 (1%)
Query: 5 EMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEK 64
E++D P+ D + + D SD +D+ S S D + RS E+
Sbjct: 109 ELQDE-PRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIATRERSLER 167
Query: 65 VTARPEK 71
R E
Sbjct: 168 RRRRREW 174
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 29.4 bits (66), Expect = 1.7
Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 21 NDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYI 80
DS++ ++S DS N D + +SS K S + + TI +
Sbjct: 32 KDSTAKTTSHDSKKSNDDETSKDTSS---KDTDKADNNNTSNQDNNDKKFS-TIDSSTSD 87
Query: 81 TKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLN 123
+ F N + +TL QN LN
Sbjct: 88 SNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLN 130
>gnl|CDD|223020 PHA03246, PHA03246, large tegument protein UL36; Provisional.
Length = 3095
Score = 29.2 bits (65), Expect = 2.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 7 EDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRS 53
E+ + P S SS+DSD D+S S+V S+S D S
Sbjct: 2984 ENKFNNVNVDPIRKRSESESLSSTDSDSDDSRSTVYNSNSTDTDMSS 3030
>gnl|CDD|184183 PRK13615, PRK13615, lipoprotein LpqB; Provisional.
Length = 557
Score = 28.8 bits (64), Expect = 2.9
Identities = 22/105 (20%), Positives = 42/105 (40%), Gaps = 24/105 (22%)
Query: 27 SSSSDSDDDNSDSSVSTSSSVDHKGR------------SVEVKKARSAEKVTARPE---- 70
+ +S+ D SV+T ++VD +G S ++ + R ++ P+
Sbjct: 99 ARTSEEVDGTYSYSVTTIATVDGQGHYREVGSDQETRLSFQLVQERGEWRIAKAPDGIAL 158
Query: 71 -KPTIRT-------YDYITKINYLFRDARFFVIKSNNSENVDIAK 107
R Y + ++L D RFFV +++ S + I K
Sbjct: 159 RSTYFREIFSAHALYFFDPTFSFLVPDLRFFVTRASQSVSTRIVK 203
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 28.0 bits (63), Expect = 3.0
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 5/45 (11%)
Query: 177 VFKIDWVSRKELPFTSTLHLYNSWNEGYPGSGVPPDPAALFDYMR 221
F++ +E + H Y W P GVP P +L D +R
Sbjct: 118 TFELKNGGSEETRTVTHFH-YTGW----PDHGVPESPKSLLDLIR 157
>gnl|CDD|165391 PHA03118, PHA03118, multifunctional expression regulator;
Provisional.
Length = 474
Score = 28.1 bits (62), Expect = 3.9
Identities = 17/75 (22%), Positives = 29/75 (38%)
Query: 37 SDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIK 96
S S + S H+ S+ K R + P + +T+D ++ + RDAR I+
Sbjct: 134 SPKSYNQQSRKKHRDESLRNKHGRPSGPPAMSPGEHFDQTHDAEYRLRFNERDARRDRIR 193
Query: 97 SNNSENVDIAKGQGV 111
D Q +
Sbjct: 194 KEYDIPTDKITEQAI 208
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 27.9 bits (62), Expect = 4.3
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 8 DIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSV----STSSSVDHKGRSVE 55
DI + D P+ + + D D S + S S+V H+G S+E
Sbjct: 130 DIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLE 181
>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional.
Length = 1465
Score = 28.3 bits (63), Expect = 4.4
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Query: 1 MAAVEMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKAR 60
++ + + K S S S SD DDD+ VS + + KG +K
Sbjct: 1284 KMEETVKAVPARRAAARKKPLASVSVISDSDDDDDDFAVEVSLAERLKKKGG----RKPA 1339
Query: 61 SAEKVTARP 69
+A K A+P
Sbjct: 1340 AANKKAAKP 1348
>gnl|CDD|218440 pfam05110, AF-4, AF-4 proto-oncoprotein. This family consists of
AF4 (Proto-oncogene AF4) and FMR2 (Fragile X E mental
retardation syndrome) nuclear proteins. These proteins
have been linked to human diseases such as acute
lymphoblastic leukaemia and mental retardation. The
family also contains a Drosophila AF4 protein homologue
Lilliputian which contains an AT-hook domain.
Lilliputian represents a novel pair-rule gene that acts
in cytoskeleton regulation, segmentation and
morphogenesis in Drosophila.
Length = 1154
Score = 28.0 bits (62), Expect = 4.5
Identities = 19/52 (36%), Positives = 23/52 (44%), Gaps = 5/52 (9%)
Query: 22 DSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPT 73
SSS SSSS S ++S S S S S E + S E PE P+
Sbjct: 395 ASSSGSSSSSSGSESSSGSDSESESSSSDSEENEPPRTASPE-----PEPPS 441
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5. Members of
this family of proteins are involved in maintaining
Golgi structure. They stimulate the formation of Golgi
stacks and ribbons, and are involved in intra-Golgi
retrograde transport. Two main interactions have been
characterized: one with RAB1A that has been activated
by GTP-binding and another with isoform CASP of CUTL1.
Length = 509
Score = 27.9 bits (62), Expect = 5.3
Identities = 13/45 (28%), Positives = 23/45 (51%)
Query: 27 SSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEK 71
+++ DDD VS+++S S V++ S+ K +R EK
Sbjct: 18 RKATEEDDDEDLLEVSSTTSSPVGSISWSVRETASSNKARSRSEK 62
>gnl|CDD|214009 cd12810, Esterase_713_like-3, Uncharacterized enzymes similar to
novel bacterial esterase that cleaves esters on
halogenated cyclic compounds. This family contains
uncharacterized proteins similar to a novel bacterial
esterase (Alcaligenes esterase 713) with the alpha/beta
hydrolase fold but does not contain the GXSXXG
pentapeptide around the active site serine residue as
commonly seen in other enzymes of this class. Esterase
713 shows negligible sequence homology to other esterase
and lipase enzymes. It is active as a dimer and cleaves
esters on halogenated cyclic compounds though its
natural substrate is unknown.
Length = 328
Score = 27.6 bits (62), Expect = 5.9
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 200 WNEGYPGSGVPPDPAALFDYMRS 222
W G+PG P DP AL + R
Sbjct: 128 WPNGFPGVQFPKDPEALDQFFRQ 150
>gnl|CDD|219082 pfam06547, DUF1117, Protein of unknown function (DUF1117). This
family represents the C-terminus of a number of
hypothetical plant proteins.
Length = 115
Score = 26.7 bits (59), Expect = 5.9
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 20 HNDSSSDSSSSDSDDDNSDSSVSTSSSV 47
+ S S SSSS S + D S S+ SSV
Sbjct: 80 VHSSRSSSSSSSSRSGSRDRSSSSRSSV 107
>gnl|CDD|180526 PRK06315, PRK06315, type III secretion system ATPase; Provisional.
Length = 442
Score = 27.6 bits (61), Expect = 6.0
Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 20/68 (29%)
Query: 157 GVSPVKWVLP----------PGLSGKVLNGVFK-IDWVSRKELPFTSTLHLYNSWNEGYP 205
GVSP V+P GL G+VLNG+ + ID T T + +E YP
Sbjct: 80 GVSPSSEVIPTGLPLHIRAGNGLLGRVLNGLGEPID---------TETKGPLENVDETYP 130
Query: 206 GSGVPPDP 213
PPDP
Sbjct: 131 IFRAPPDP 138
>gnl|CDD|140333 PTZ00312, PTZ00312, inositol-1,4,5-triphosphate 5-phosphatase;
Provisional.
Length = 356
Score = 27.5 bits (61), Expect = 6.7
Identities = 9/43 (20%), Positives = 17/43 (39%)
Query: 33 DDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKPTIR 75
D+ ++ D KG + + + +VTA P + R
Sbjct: 247 VAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNYCR 289
>gnl|CDD|143509 cd06842, PLPDE_III_Y4yA_like, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Y4yA. This subfamily is composed
of the hypothetical Rhizobium sp. protein Y4yA and
similar uncharacterized bacterial proteins. These
proteins are homologous to eukaryotic ornithine
decarboxylase (ODC) and diaminopimelate decarboxylase
(DapDC). ODC and DapDC are fold type III PLP-dependent
enzymes that contain an N-terminal PLP-binding
TIM-barrel domain and a C-terminal beta-sandwich domain,
similar to bacterial alanine racemases. ODC participates
in the formation of putrescine by catalyzing the
decarboxylation of ornithine, the first step in
polyamine biosynthesis. DapDC participates in the last
step of lysine biosynthesis, the conversion of
meso-2,6-diaminoheptanedioate to L-lysine. Proteins in
this subfamily may function as PLP-dependent
decarboxylases.
Length = 423
Score = 27.2 bits (61), Expect = 8.2
Identities = 10/45 (22%), Positives = 16/45 (35%)
Query: 114 TLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGV 158
T +N L ++ R++ K R A+ A GV
Sbjct: 19 TFRENIAALRAVLDRHGVDGRVYFARKANKSLALVRAAAAAGIGV 63
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 27.4 bits (60), Expect = 8.4
Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 5 EMEDIKPKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEK 64
D + L+ NDS S+ S S+S+ ++SDS +S S +K
Sbjct: 146 HATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKL--DNLRNYIVSLKK 203
Query: 65 VTARPEKP-TIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
A E + D I +I Y + +S +SE +DI
Sbjct: 204 DEADAESVLSSDDNDSIEEIKYDPHETN---KESGSSETIDI 242
>gnl|CDD|213830 TIGR03576, pyridox_MJ0158, pyridoxal phosphate enzyme, MJ0158
family. Members of this archaeal protein family are
pyridoxal phosphate enzymes of unknown function.
Sequence similarity to SelA, a bacterial enzyme of
selenocysteine biosynthesis, has led to some members
being misannotated as functionally equivalent, but
selenocysteine is made on tRNA in Archaea by a two-step
process that does not involve a SelA homolog [Unknown
function, Enzymes of unknown specificity].
Length = 346
Score = 27.0 bits (60), Expect = 8.4
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
Query: 25 SDSSSSDSDDDNSDSSVSTSSSVDHKGRSVE-----VKKARSAEKVTA 67
SD S D + V T S++D K S E +K+A+S E +
Sbjct: 125 SDELSELKKIDGTSLVVITGSTMDLKVVSEEDLKRVIKQAKSKEAIVL 172
>gnl|CDD|218082 pfam04425, Bul1_N, Bul1 N terminus. This family contains the N
terminus of Saccharomyces cerevisiae Bul1. Bul1 binds
the ubiquitin ligase Rsp5, via an N terminal PPSY
motif. The complex containing Bul1 and Rsp5 is involved
in intracellular trafficking of the general amino acid
permease Gap1, degradation of Rog1 in cooperation with
Bul2 and GSK-3, and mitochondrial inheritance. Bul1 may
contain HEAT repeats.
Length = 432
Score = 26.9 bits (60), Expect = 8.6
Identities = 11/39 (28%), Positives = 16/39 (41%)
Query: 11 PKLKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDH 49
P L D P + + S S S S ++ S S+ S
Sbjct: 45 PDLHDFPPSYEEVPSSSPSPTSPSSSNTVSASSLSLESP 83
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 27.1 bits (60), Expect = 8.6
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 21 NDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPE 70
N+ +S+S S +SD + S+S S S + K T P
Sbjct: 229 NEDTSESESDESDSEISESR---SVSDSEESSPPSKKPKEKKTSSTFLPS 275
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 25.8 bits (57), Expect = 8.9
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 20 HNDSSSDSSSSDSDDDNSDSSVSTSSSVD 48
++ + SSSS S D +S + ++T S D
Sbjct: 39 NSSNGGSSSSSSSGDSSSGTRITTESESD 67
>gnl|CDD|218612 pfam05501, DUF755, Domain of unknown function (DUF755). This
family is predominated by ORFs from Circoviridae. The
function of this family remains to be determined.
Length = 122
Score = 25.8 bits (57), Expect = 9.7
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 17 PKFHNDSSSDSSSSDSDDDNSDSSVSTSS 45
K SSSS S +S SS S SS
Sbjct: 94 KKISAKKRRRSSSSSSSSSSSSSSSSESS 122
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.312 0.129 0.373
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,161,485
Number of extensions: 991759
Number of successful extensions: 1094
Number of sequences better than 10.0: 1
Number of HSP's gapped: 985
Number of HSP's successfully gapped: 52
Length of query: 222
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 129
Effective length of database: 6,812,680
Effective search space: 878835720
Effective search space used: 878835720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.8 bits)