RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy8690
         (222 letters)



>2yud_A YTH domain-containing protein 1; structure genomics, structural
           genomics, NPPSFA, national project on protein structural
           and functional analyses; NMR {Homo sapiens}
          Length = 180

 Score =  143 bits (362), Expect = 2e-43
 Identities = 84/137 (61%), Positives = 104/137 (75%)

Query: 69  PEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRE 128
                    D  +K+ Y+ +DARFF+IKSNN ENV +AK +GVWSTLP NE+KLN A+R 
Sbjct: 5   SSGVRAVRKDQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRS 64

Query: 129 SRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKEL 188
           +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+EL
Sbjct: 65  ARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRREL 124

Query: 189 PFTSTLHLYNSWNEGYP 205
           PFT + HL N WNE  P
Sbjct: 125 PFTKSAHLTNPWNEHKP 141


>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA,
           national project on protein structural and functional
           analyses; NMR {Homo sapiens}
          Length = 141

 Score =  127 bits (321), Expect = 6e-38
 Identities = 48/117 (41%), Positives = 72/117 (61%), Gaps = 7/117 (5%)

Query: 89  DARFFVIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFA 148
             R+F++KS+N  N++I++ +G+WST P NE+KLN+A+ ES  V L+FSV+ SG F GF+
Sbjct: 7   GVRYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFS 66

Query: 149 RLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGYP 205
           R++SE     S        G       GVFK++W+ ++ LPF    HL N WN+   
Sbjct: 67  RMSSEIGREKSQDWGSAGLG-------GVFKVEWIRKESLPFQFAHHLLNPWNDNKK 116


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 49.9 bits (118), Expect = 2e-07
 Identities = 40/215 (18%), Positives = 67/215 (31%), Gaps = 71/215 (33%)

Query: 5   EMEDIKPKLKD-LPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDH-------------- 49
           E  + + + KD L  F +    +    D  D     S+ +   +DH              
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQD--MPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 50  ------KGRSVEVKKARS----------AEKVTARPEKPTIRTYDYITKINYLFRDARFF 93
                 K   + V+K                +     +P++ T  YI + + L+ D + F
Sbjct: 68  FWTLLSKQEEM-VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 94  VIKSNNSENVDIAKGQGVWSTLPQNEQKLNQAYRESRNV--LLIFSVRESGKFSGFARLA 151
             K N            V     Q   KL QA  E R    +LI  V  SGK      +A
Sbjct: 127 A-KYN------------VSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VA 167

Query: 152 SEA--DHGVSPVKWVLPPGLSGKVLNGVFKIDWVS 184
            +    +    V+  +           +F   W++
Sbjct: 168 LDVCLSY---KVQCKMD--------FKIF---WLN 188


>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
          methyltransferase, guanylyltransferase, zinc finger,
          icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
          PDB: 2cse_V
          Length = 1275

 Score = 28.7 bits (63), Expect = 1.7
 Identities = 11/62 (17%), Positives = 24/62 (38%)

Query: 13 LKDLPKFHNDSSSDSSSSDSDDDNSDSSVSTSSSVDHKGRSVEVKKARSAEKVTARPEKP 72
          +K +P+     SS   +  ++  +  SS       +  G +       + E+  ARP   
Sbjct: 1  MKRIPRKTKGKSSGKGNDSTERSDDGSSQLRDKQNNKAGPATTEPGTSNREQYRARPGIA 60

Query: 73 TI 74
          ++
Sbjct: 61 SV 62


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 27.2 bits (59), Expect = 3.3
 Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 55 EVKKARSAEKVTARPEK-PTI 74
           +KK +++ K+ A  +  P +
Sbjct: 21 ALKKLQASLKLYA-DDSAPAL 40


>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
           ATP binding, phosphoryla transferase; HET: ATP; 1.75A
           {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
          Length = 289

 Score = 26.5 bits (59), Expect = 7.6
 Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 8/45 (17%)

Query: 130 RNVLLIFSVRESG------KFS--GFARLASEADHGVSPVKWVLP 166
           +N+LLI             K S  G +      D     + WV P
Sbjct: 142 KNILLIREEDRKTGNPPFIKLSDPGISITVLPKDILQERIPWVPP 186


>1dy2_A Collagen alpha1(XV) chain; angiogenesis inhibitor; 2.0A {Mus
           musculus} SCOP: d.169.1.5
          Length = 180

 Score = 26.1 bits (57), Expect = 7.7
 Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 169 LSGKVLNGVFKIDWVSRKELPFTST--LHLYNSWNEGYPGSGVPPDPAA 215
           LS  + +    +    R  LP  +     L+N+W+  + G G   +   
Sbjct: 46  LSSHLQDLSTVVRKAERFGLPIVNLKGQVLFNNWDSIFSGDGGQFNTHI 94


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.312    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0741    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,318,429
Number of extensions: 182087
Number of successful extensions: 300
Number of sequences better than 10.0: 1
Number of HSP's gapped: 299
Number of HSP's successfully gapped: 10
Length of query: 222
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 132
Effective length of database: 4,188,903
Effective search space: 552935196
Effective search space used: 552935196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (24.9 bits)