RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy8690
         (222 letters)



>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus
           thermophilus [TaxId: 274]}
          Length = 80

 Score = 24.6 bits (54), Expect = 4.0
 Identities = 12/56 (21%), Positives = 19/56 (33%)

Query: 50  KGRSVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDI 105
           KG  V+        ++ A+ EK  I+T+   + I          V        V I
Sbjct: 6   KGVFVDDHLLEKVLELNAKGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYI 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.129    0.373 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 807,224
Number of extensions: 34619
Number of successful extensions: 52
Number of sequences better than 10.0: 1
Number of HSP's gapped: 52
Number of HSP's successfully gapped: 3
Length of query: 222
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 140
Effective length of database: 1,281,736
Effective search space: 179443040
Effective search space used: 179443040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (23.5 bits)