BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8691
(211 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q96MU7|YTDC1_HUMAN YTH domain-containing protein 1 OS=Homo sapiens GN=YTHDC1 PE=1 SV=3
Length = 727
Score = 168 bits (426), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 83/166 (50%), Positives = 104/166 (62%), Gaps = 41/166 (24%)
Query: 37 DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
D +K+ Y+ +DARFF+IKSNN ENV +AK++G
Sbjct: 343 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKG--------------------------- 375
Query: 97 NYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
VWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ H
Sbjct: 376 --------------VWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHH 421
Query: 157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
G SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL N WNE
Sbjct: 422 GGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 467
>sp|Q9QY02|YTDC1_RAT YTH domain-containing protein 1 OS=Rattus norvegicus GN=Ythdc1 PE=1
SV=1
Length = 738
Score = 165 bits (418), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/166 (49%), Positives = 103/166 (62%), Gaps = 41/166 (24%)
Query: 37 DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
D +K+ + +DARFF+IKSNN ENV +AK++
Sbjct: 346 DQTSKLKSVLQDARFFLIKSNNHENVSLAKAK---------------------------- 377
Query: 97 NYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADH 156
GVWSTLP NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ H
Sbjct: 378 -------------GVWSTLPVNEKKLNLAFRSARSVILIFSVRESGKFQGFARLSSESHH 424
Query: 157 GVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
G SP+ WVLP G+S K+L GVFKIDW+ R+ELPFT + HL N WNE
Sbjct: 425 GGSPIHWVLPAGMSAKMLGGVFKIDWICRRELPFTKSAHLTNPWNE 470
>sp|Q5R746|YTDC2_PONAB YTH domain-containing protein 2 OS=Pongo abelii GN=YTHDC2 PE=2 SV=1
Length = 671
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 44/95 (46%), Positives = 61/95 (64%), Gaps = 7/95 (7%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 549 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 603
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++W+ ++ LPF HL N WN+ +
Sbjct: 604 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 636
>sp|B2RR83|YTDC2_MOUSE Probable ATP-dependent RNA helicase YTHDC2 OS=Mus musculus GN=Ythdc2
PE=2 SV=1
Length = 1445
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1323 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1377
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 1378 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1408
>sp|Q9H6S0|YTDC2_HUMAN Probable ATP-dependent RNA helicase YTHDC2 OS=Homo sapiens GN=YTHDC2
PE=1 SV=2
Length = 1430
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 60/93 (64%), Gaps = 7/93 (7%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1308 GIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1362
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+G L GVFK++W+ ++ LPF HL N WN+
Sbjct: 1363 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWND 1393
>sp|Q0DA50|C3H45_ORYSJ Zinc finger CCCH domain-containing protein 45 OS=Oryza sativa
subsp. japonica GN=Os06g0677700 PE=2 SV=1
Length = 665
Score = 63.2 bits (152), Expect = 1e-09, Method: Composition-based stats.
Identities = 42/154 (27%), Positives = 63/154 (40%), Gaps = 43/154 (27%)
Query: 49 ARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKV 108
+R+F++KS N EN++I+ QG+
Sbjct: 260 SRYFIVKSCNRENLEISVQQGI-------------------------------------- 281
Query: 109 YGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPG 168
W+T NE KLN+A+ NV+LIFS+ + F G A++ S + W G
Sbjct: 282 ---WATQRSNEAKLNEAFESIENVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHG 338
Query: 169 LSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+ N F I W+ EL F T HL N +N+
Sbjct: 339 TAHYGRN--FSIQWLKLCELSFQKTHHLRNPYND 370
>sp|A9LNK9|CPSF_ARATH Cleavage and polyadenylation specificity factor CPSF30
OS=Arabidopsis thaliana GN=CPSF30 PE=1 SV=1
Length = 631
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 8/127 (6%)
Query: 82 NQAYRESRDVLLIFSNYYV---SNELNFKV---YGVWSTLPQNEQKLNQAYRESRNVLLI 135
+Q R S + + Y+V +N NF++ GVW+T NE KLN+A+ NV+LI
Sbjct: 223 DQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILI 282
Query: 136 FSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLH 195
FSV + F G A++ S + W G + N F + W+ EL F T +
Sbjct: 283 FSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRN--FSVKWLKLCELSFHKTRN 340
Query: 196 LYNSWNE 202
L N +NE
Sbjct: 341 LRNPYNE 347
Score = 55.5 bits (132), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+FV+KSNN EN +++ QGVW+T NE KLN+A+ +V+LIFS
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFS 284
>sp|P59326|YTHD1_MOUSE YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1
Length = 559
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 12/114 (10%)
Query: 87 ESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESG 142
+S V +I S Y ++++ + Y +W + ++L+ A+R + V L+FSV SG
Sbjct: 387 KSGRVFIIKS--YSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSG 444
Query: 143 KFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
F G A + S D+G S W S G F + W+ K++P H+
Sbjct: 445 HFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHI 492
>sp|Q9BYJ9|YTHD1_HUMAN YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1
Length = 559
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 53/114 (46%), Gaps = 12/114 (10%)
Query: 87 ESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYR---ESRNVLLIFSVRESG 142
+S V +I S Y ++++ + Y +W + ++L+ A+R V L+FSV SG
Sbjct: 387 KSGRVFIIKS--YSEDDIHRSIKYSIWCSTEHGNKRLDSAFRCMSSKGPVYLLFSVNGSG 444
Query: 143 KFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
F G A + S D+G S W S G F + W+ K++P H+
Sbjct: 445 HFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVQWIFVKDVPNNQLRHI 492
>sp|Q4R5D9|YTHD2_MACFA YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2
SV=1
Length = 579
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
Y +W + ++L+ AYR V L+FSV SG F G A + S D+ W
Sbjct: 429 YNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW-- 486
Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
S G F + W+ K++P + H+
Sbjct: 487 ----SQDKWKGRFDVRWIFVKDVPNSQLRHI 513
>sp|Q0VCZ3|YTHD2_BOVIN YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1
Length = 580
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
Y +W + ++L+ AYR V L+FSV SG F G A + S D+ W
Sbjct: 430 YNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW-- 487
Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
S G F + W+ K++P + H+
Sbjct: 488 ----SQDKWKGRFDVRWIFVKDVPNSQLRHI 514
>sp|Q9Y5A9|YTHD2_HUMAN YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2
Length = 579
Score = 41.2 bits (95), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
Y +W + ++L+ AYR V L+FSV SG F G A + S D+ W
Sbjct: 429 YNIWCSTEHGNKRLDAAYRSMNGKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVW-- 486
Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
S G F + W+ K++P + H+
Sbjct: 487 ----SQDKWKGRFDVRWIFVKDVPNSQLRHI 513
>sp|Q8BYK6|YTHD3_MOUSE YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2
Length = 585
Score = 38.9 bits (89), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
Y +W + ++L+ AYR + L+FSV SG F G A + S D+ W
Sbjct: 435 YSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW-- 492
Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
S G F++ W+ K++P H+
Sbjct: 493 ----SQDKWKGKFEVKWIFVKDVPNNQLRHI 519
>sp|Q5RFL8|YTHD3_PONAB YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1
Length = 585
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
Y +W + ++L+ AYR + L+FSV SG F G A + S D+ W
Sbjct: 435 YSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW-- 492
Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
S G F++ W+ K++P H+
Sbjct: 493 ----SQDKWKGKFEVKWIFVKDVPNNQLRHI 519
>sp|Q7Z739|YTHD3_HUMAN YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1
Length = 585
Score = 38.5 bits (88), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 109 YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESGKFSGFARLASEADHGVSPVKWVL 165
Y +W + ++L+ AYR + L+FSV SG F G A + S D+ W
Sbjct: 435 YSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSGHFCGVAEMKSVVDYNAYAGVW-- 492
Query: 166 PPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
S G F++ W+ K++P H+
Sbjct: 493 ----SQDKWKGKFEVKWIFVKDVPNNQLRHI 519
>sp|Q06390|YD374_YEAST YTH domain-containing protein YDR374C OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=YDR374C PE=4 SV=1
Length = 306
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 54/136 (39%), Gaps = 43/136 (31%)
Query: 48 DARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFK 107
++RFFVIKS++ ++V + G+WS+ ++L++AY+
Sbjct: 154 NSRFFVIKSSSLKHVKRSFYNGIWSSTHFGNKRLSEAYK--------------------- 192
Query: 108 VYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPP 167
KLN + V L FS+ SG+F G A + S+ + W
Sbjct: 193 -------------KLNSGAK----VFLFFSINTSGRFCGVAEMVSDLKMDLDTSIWE--- 232
Query: 168 GLSGKVLNGVFKIDWV 183
+ FK+ WV
Sbjct: 233 --DEQKYGKAFKVRWV 246
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.132 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80,503,813
Number of Sequences: 539616
Number of extensions: 3123290
Number of successful extensions: 6875
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6840
Number of HSP's gapped (non-prelim): 41
length of query: 211
length of database: 191,569,459
effective HSP length: 112
effective length of query: 99
effective length of database: 131,132,467
effective search space: 12982114233
effective search space used: 12982114233
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)