Query psy8691
Match_columns 211
No_of_seqs 120 out of 322
Neff 4.7
Searched_HMMs 29240
Date Fri Aug 16 16:47:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8691.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8691hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yud_A YTH domain-containing p 100.0 5.1E-48 1.8E-52 324.9 11.4 136 26-208 9-144 (180)
2 2yu6_A YTH domain-containing p 100.0 4.4E-46 1.5E-50 302.3 11.3 116 45-208 4-119 (141)
3 2hd9_A UPF0310 protein PH1033; 95.8 0.042 1.5E-06 43.8 8.5 100 50-195 2-109 (145)
4 2p5d_A UPF0310 protein mjecl36 93.7 0.13 4.5E-06 41.0 6.1 101 49-194 4-112 (147)
5 2yu6_A YTH domain-containing p 83.3 0.25 8.6E-06 39.4 0.3 26 89-114 7-32 (141)
6 2yud_A YTH domain-containing p 80.8 0.38 1.3E-05 39.9 0.5 41 80-122 18-58 (180)
7 2gbs_A Hypothetical protein RP 29.8 1.2E+02 0.004 24.2 6.0 34 121-155 38-71 (145)
8 3zzy_A Polypyrimidine tract-bi 29.8 60 0.002 24.9 4.2 38 118-155 41-78 (130)
9 2dgv_A HnRNP M, heterogeneous 18.8 2.1E+02 0.0072 18.8 5.3 34 118-151 21-54 (92)
10 2ar1_A Hypothetical protein; s 17.6 1.7E+02 0.0058 23.9 4.8 37 121-157 54-90 (172)
No 1
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=5.1e-48 Score=324.86 Aligned_cols=136 Identities=61% Similarity=1.053 Sum_probs=119.3
Q ss_pred cCCCCCCccCccchhccccCCCcceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEeccccccccc
Q psy8691 26 ARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELN 105 (211)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~ 105 (211)
+...++++ .+++++++++|||||||++++||++|++||+|+||++||++|++|
T Consensus 9 ~~~~~~~~------~~~~~~~~~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL~~A--------------------- 61 (180)
T 2yud_A 9 RAVRKDQT------SKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLA--------------------- 61 (180)
T ss_dssp CCCCCCSS------HHHHHHTTTCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHHHHH---------------------
T ss_pred hhcchhhc------cccccccCceEEEEEEeCCHHHHHHHHHcCEeecccccHHHHHHH---------------------
Confidence 33455665 455666789999999999999999999999999999955555555
Q ss_pred ceeccccccCccchHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEe
Q psy8691 106 FKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSR 185 (211)
Q Consensus 106 ~i~~~vWaT~~~Ne~~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~ 185 (211)
|+++++||||||||+||+|||||+|+|+++.+.++..|+.+.|+++++|+|.|+|+||++
T Consensus 62 --------------------f~~~~~V~L~FSVn~Sg~F~G~A~M~s~~~~~~~~~~W~~~~~~~~~~~~g~F~V~Wi~~ 121 (180)
T 2yud_A 62 --------------------FRSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICR 121 (180)
T ss_dssp --------------------HHHSSCEEEEEEETTTSEEEEEEEEEEEEECSSCCCCCCCCSSCCGGGGCSEEEEEEEEC
T ss_pred --------------------HhhCCeEEEEEEeCCCCcEEEEEEEccCCCCCCCCccccccCccchhhcCCceEEEEEEe
Confidence 555678999999999999999999999999988889999887777889999999999999
Q ss_pred ecCCcccccccccccCCCccccc
Q psy8691 186 KELPFTSTLHLYNSWNEGEWYNS 208 (211)
Q Consensus 186 ~dLPf~~~~HL~Np~NenkPV~~ 208 (211)
++|||+.++||+||+|+||||+.
T Consensus 122 ~dvPf~~~~hl~n~~NenkpV~~ 144 (180)
T 2yud_A 122 RELPFTKSAHLTNPWNEHKPVKI 144 (180)
T ss_dssp SCEEHHHHTTCCBTTTTSBCTTS
T ss_pred ecCCchhhhhccccccCCCeeee
Confidence 99999999999999999999986
No 2
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=100.00 E-value=4.4e-46 Score=302.29 Aligned_cols=116 Identities=41% Similarity=0.796 Sum_probs=104.4
Q ss_pred CCCcceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHH
Q psy8691 45 LFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQ 124 (211)
Q Consensus 45 ~~~~~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~ 124 (211)
...++|||||||++++|||+|++||+|+||++ |+++|++
T Consensus 4 ~~~~~rfFIiKS~s~~ni~~S~k~gvW~tt~~-----------------------------------------~~~~L~~ 42 (141)
T 2yu6_A 4 GSSGVRYFIMKSSNLRNLEISQQKGIWSTTPS-----------------------------------------NERKLNR 42 (141)
T ss_dssp CCCCCEEEEEEESSSHHHHHHHHTCEEECCTT-----------------------------------------SHHHHHH
T ss_pred CCCCcEEEEEEeCCHHHHHHHHHcCEeeccCc-----------------------------------------cHHHHHH
Confidence 46789999999999999999999999999988 4555555
Q ss_pred HHhcCCcEEEEEEECCCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCcccccccccccCCCc
Q psy8691 125 AYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204 (211)
Q Consensus 125 AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~HL~Np~Nenk 204 (211)
||+++++||||||||+||+|||||+|+|+++. .++..|+ +.+|+|.|+|+||++++|||+.++||+||+|+||
T Consensus 43 Af~~~~~V~L~FSvn~Sg~F~G~A~M~s~~~~-~~~~~W~------~~~~~g~F~V~Wi~~~~vpf~~~~hl~n~~N~nk 115 (141)
T 2yu6_A 43 AFWESSIVYLVFSVQGSGHFQGFSRMSSEIGR-EKSQDWG------SAGLGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 115 (141)
T ss_dssp HHHHSSCEEEEEEESSSSEECEEEEECSCSSS-CCCCCCS------CSCCCCEEEEEEEECSCEEHHHHTSCEETTSTTE
T ss_pred HHhcCCcEEEEEEECCCCeEEEEEEEcccCCC-CCCcccc------ccccCCcEEEEEEEeecCChHHhhhcccccCCCC
Confidence 55557899999999999999999999999998 5668895 4789999999999999999999999999999999
Q ss_pred cccc
Q psy8691 205 WYNS 208 (211)
Q Consensus 205 PV~~ 208 (211)
||+.
T Consensus 116 ~V~~ 119 (141)
T 2yu6_A 116 KVQI 119 (141)
T ss_dssp ETTC
T ss_pred eEEe
Confidence 9986
No 3
>2hd9_A UPF0310 protein PH1033; pyrococcus horikoshii OT3, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: CIT; 1.35A {Pyrococcus horikoshii} SCOP: b.122.1.8 PDB: 1wmm_A* 2zbn_A
Probab=95.80 E-value=0.042 Score=43.78 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=65.0
Q ss_pred eEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHhcC
Q psy8691 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRES 129 (211)
Q Consensus 50 rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~~ 129 (211)
+|-++|| +.+++...++.|+|-- ..+.+ | ..++- +.
T Consensus 2 ~YWL~ks-s~d~~~~~~~~g~~GV-n~~ar--------------------------------------n---~lr~m-k~ 37 (145)
T 2hd9_A 2 TYWICIT-NRENWEVIKRHNVWGV-PKKHK--------------------------------------N---TLSRV-KP 37 (145)
T ss_dssp CEEEEEE-CHHHHHHHHHHCEEEE-CGGGH--------------------------------------H---HHTTC-CT
T ss_pred ceEEEeC-CHHHHHHHHHcCcccc-CHHHH--------------------------------------H---HHHhC-CC
Confidence 5899999 7999999999998855 44222 1 11222 34
Q ss_pred CcEEEEEEECCC--------CceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEeecCCcccccc
Q psy8691 130 RNVLLIFSVRES--------GKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLH 195 (211)
Q Consensus 130 ~~V~LiFSVN~S--------g~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~~dLPf~~~~H 195 (211)
+.-+|||+-+.. ..|-|.|+.++.+-++. +..|..+..+ ....--..+|+++....+|+..+..
T Consensus 38 GD~~~fYhs~~~~~~~~~~~~~ivGi~eV~~e~y~D~-t~~~~~~~~~-~~~~p~rv~v~~v~~~~i~~~~l~~ 109 (145)
T 2hd9_A 38 GDKLVIYVRQEKDKEGNLLEPKIVGIYEVTSEPYVDF-SRIFKPHRGG-KETYPYRVKIKPIKIGEINFKPLIN 109 (145)
T ss_dssp TCEEEEEECCEECTTCCEECCEEEEEEEECSCCEECC-CCCSCCTTSS-CCCCCEEEEEEEEEEEEEESGGGGG
T ss_pred CCEEEEEEccccccCCCCCCceEEEEEEEcCCcEeCC-CccCCCcccc-cCCeeEEEeCEEEeeccCcHHHHHh
Confidence 677778887665 79999999999775543 2333322111 1122235578899999998876543
No 4
>2p5d_A UPF0310 protein mjecl36; NPPSFA, national project on protein structural and functional analyses; 1.70A {Methanocaldococcus jannaschii}
Probab=93.69 E-value=0.13 Score=40.99 Aligned_cols=101 Identities=13% Similarity=0.257 Sum_probs=64.1
Q ss_pred ceEEEEecCChhhHHHHHHhCccccCchhHHHHHHHHHhccceEEEEecccccccccceeccccccCccchHHHHHHHhc
Q psy8691 49 ARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRE 128 (211)
Q Consensus 49 ~rfFiIKS~~~~ni~~S~~~g~W~st~~~n~~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L~~AF~~ 128 (211)
-+|.|+||. .+++...++.|+|-- .++.+ | +.++-+.
T Consensus 4 m~YWL~~se-~~~~~~~~~~g~wGV-n~~ar--------------------------------------n---~lr~Mk~ 40 (147)
T 2p5d_A 4 MAYWLCITN-EDNWKVIKEKKIWGV-AERYK--------------------------------------N---TINKVKV 40 (147)
T ss_dssp CCEEEEEEC-HHHHHHHHHHCEEEE-CGGGH--------------------------------------H---HHTTCCT
T ss_pred ccceeeecC-HHHHHHHHHcCeeec-CHHHH--------------------------------------H---HHHhCCC
Confidence 479999987 777999999998844 33211 1 2223333
Q ss_pred CCcEEEEEEEC------CCCceeEEEEeecCCCCCCCCccccCCCCCCCCccCCceeEEEEEe--ecCCccccc
Q psy8691 129 SRNVLLIFSVR------ESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSR--KELPFTSTL 194 (211)
Q Consensus 129 ~~~V~LiFSVN------~Sg~FqGyArM~S~~~~~~~~~~W~~~~g~~~~~~~g~F~I~Wl~~--~dLPf~~~~ 194 (211)
+.-+|||... +-..|-|.|+.++.+-++. +..|..++.+......-..+|+++.. ..+|+..++
T Consensus 41 -GD~~~fY~~~~~hs~~~~~~ivGi~eV~~e~y~D~-t~~dp~~~y~~~~~~w~~VdV~~v~~~~~~v~L~~Lk 112 (147)
T 2p5d_A 41 -GDKLIIYEIQRSGKDYKPPYIRGVYEVVSEVYKDS-SKIFKPTPRNPNEKFPYRVKLKEIKVFEPPINFKELI 112 (147)
T ss_dssp -TCEEEEEECCBCSTTCBCCEEEEEEEECSCCEECC-CCCSCCBTTBTTCCCCEEEEEEEEEEEEEEEEHHHHG
T ss_pred -CCEEEEEEecccCCCCCCCEEEEEEEEecccccCC-cccCcCccCcCCCCCceEEEEEEEeecCCccCHHHHH
Confidence 5555666333 3458999999999765442 34443332222233445889999988 888888776
No 5
>2yu6_A YTH domain-containing protein 2; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=83.29 E-value=0.25 Score=39.39 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.1
Q ss_pred cceEEEEecccccccccceecccccc
Q psy8691 89 RDVLLIFSNYYVSNELNFKVYGVWST 114 (211)
Q Consensus 89 ~~~~~ifs~~~~~~~l~~i~~~vWaT 114 (211)
..+|||.+++..++.-.+++||||+|
T Consensus 7 ~~rfFIiKS~s~~ni~~S~k~gvW~t 32 (141)
T 2yu6_A 7 GVRYFIMKSSNLRNLEISQQKGIWST 32 (141)
T ss_dssp CCEEEEEEESSSHHHHHHHHTCEEEC
T ss_pred CcEEEEEEeCCHHHHHHHHHcCEeec
Confidence 45899999999988777999999996
No 6
>2yud_A YTH domain-containing protein 1; structure genomics, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=80.76 E-value=0.38 Score=39.91 Aligned_cols=41 Identities=37% Similarity=0.491 Sum_probs=34.3
Q ss_pred HHHHHHHhccceEEEEecccccccccceeccccccCccchHHH
Q psy8691 80 KLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKL 122 (211)
Q Consensus 80 ~L~~ay~~~~~~~~ifs~~~~~~~l~~i~~~vWaT~~~Ne~~L 122 (211)
+|+-.++ +.+|||.+++..++.-.+++||||+|+++|+++|
T Consensus 18 ~~~~~~~--~arfFIIKS~s~~ni~~Sik~gvWatt~~n~~kL 58 (180)
T 2yud_A 18 KLKYVLQ--DARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKL 58 (180)
T ss_dssp HHHHHTT--TCEEEEEEESCHHHHHHHHHHTEECCCHHHHHHH
T ss_pred ccccccC--ceEEEEEEeCCHHHHHHHHHcCEeecccccHHHH
Confidence 3554443 4689999999999877799999999999999987
No 7
>2gbs_A Hypothetical protein RPA0253; alpha-beta, RPR3, NESG, structural genomics, COG294 protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: b.122.1.8
Probab=29.79 E-value=1.2e+02 Score=24.17 Aligned_cols=34 Identities=21% Similarity=0.248 Sum_probs=23.8
Q ss_pred HHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCC
Q psy8691 121 KLNQAYRESRNVLLIFSVRESGKFSGFARLASEAD 155 (211)
Q Consensus 121 ~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~ 155 (211)
.+.++-+.++.| |||--|.....-|.|+.++..-
T Consensus 38 n~mr~Mk~GD~~-ffYHS~~~~gIvGi~eVv~e~y 71 (145)
T 2gbs_A 38 LHMVAMRRGDRA-FYYHSNEGKEIVGIAEIIREAY 71 (145)
T ss_dssp HHHHHCCTTCEE-EEEETTTTCEEEEEEEEEEEEE
T ss_pred HHHHhcCCCCEE-EEEEeCCCCceEEEEEEEEecc
Confidence 344455555555 5565568899999999999863
No 8
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=29.75 E-value=60 Score=24.89 Aligned_cols=38 Identities=18% Similarity=0.313 Sum_probs=31.1
Q ss_pred chHHHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCC
Q psy8691 118 NEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEAD 155 (211)
Q Consensus 118 Ne~~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~ 155 (211)
.++.|.+.|...+.|.=+.-+.+++.||||-+|.+.-+
T Consensus 41 te~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~ 78 (130)
T 3zzy_A 41 TLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVS 78 (130)
T ss_dssp CHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHH
T ss_pred CHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHH
Confidence 67889999999998866655567889999999988643
No 9
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=18.80 E-value=2.1e+02 Score=18.77 Aligned_cols=34 Identities=24% Similarity=0.248 Sum_probs=26.4
Q ss_pred chHHHHHHHhcCCcEEEEEEECCCCceeEEEEee
Q psy8691 118 NEQKLNQAYRESRNVLLIFSVRESGKFSGFARLA 151 (211)
Q Consensus 118 Ne~~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~ 151 (211)
.++.|.+.|...+.|.-+.-...+|...|||-+.
T Consensus 21 t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~ 54 (92)
T 2dgv_A 21 TWKMLKDKFNECGHVLYADIKMENGKSKGCGVVK 54 (92)
T ss_dssp CHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEE
T ss_pred CHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEE
Confidence 6788999999988887666666788888887543
No 10
>2ar1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP, unknown F; 1.60A {Leishmania major} SCOP: b.122.1.8
Probab=17.65 E-value=1.7e+02 Score=23.92 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=25.1
Q ss_pred HHHHHHhcCCcEEEEEEECCCCceeEEEEeecCCCCC
Q psy8691 121 KLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHG 157 (211)
Q Consensus 121 ~L~~AF~~~~~V~LiFSVN~Sg~FqGyArM~S~~~~~ 157 (211)
.+..+-+.++.|++.-|-.+.....|.|+.++...++
T Consensus 54 N~mr~Mk~GD~vfFYHS~c~~pgIvGi~eVv~e~ypD 90 (172)
T 2ar1_A 54 NNMRAMSVGDKVLFYHSNTKEPGVAGLAEVVRLAYDD 90 (172)
T ss_dssp HHHHHCCTTCEEEEEECSSSSCEEEEEEEEEEEEEEC
T ss_pred HHHHhcCCCCEEEEEecCCCCCEEEEEEEEeeeccCC
Confidence 4445656666655544544889999999999976543
Done!