Your job contains 1 sequence.
>psy8691
MVSLCNIMVSLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSE
NVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQ
KLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKI
DWVSRKELPFTSTLHLYNSWNEGEWYNSWNE
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy8691
(211 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
RGD|621706 - symbol:Ythdc1 "YTH domain containing 1" spec... 379 2.5e-36 2
ZFIN|ZDB-GENE-041114-114 - symbol:ythdc1 "YTH domain cont... 384 7.1e-35 1
UNIPROTKB|Q96MU7 - symbol:YTHDC1 "YTH domain-containing p... 378 4.2e-34 1
FB|FBgn0027616 - symbol:YT521-B "YT521-B" species:7227 "D... 356 9.9e-32 1
UNIPROTKB|E2QZR7 - symbol:YTHDC2 "Uncharacterized protein... 218 2.6e-17 2
UNIPROTKB|F1NS70 - symbol:YTHDC2 "Uncharacterized protein... 224 4.2e-17 1
UNIPROTKB|F1RLG0 - symbol:YTHDC2 "Uncharacterized protein... 217 1.9e-16 1
UNIPROTKB|F1MNU7 - symbol:YTHDC2 "Uncharacterized protein... 217 2.5e-16 1
MGI|MGI:2448561 - symbol:Ythdc2 "YTH domain containing 2"... 217 2.6e-16 1
UNIPROTKB|Q9H6S0 - symbol:YTHDC2 "Probable ATP-dependent ... 216 3.2e-16 1
TAIR|locus:2028175 - symbol:CPSF30 "AT1G30460" species:37... 152 2.9e-09 1
TAIR|locus:2118046 - symbol:AT4G11970 "AT4G11970" species... 149 7.8e-09 1
ASPGD|ASPL0000015049 - symbol:AN10537 species:162425 "Eme... 113 1.7e-06 2
TAIR|locus:2095938 - symbol:ECT1 "evolutionarily conserve... 123 2.3e-05 1
TAIR|locus:2159391 - symbol:ECT3 "AT5G61020" species:3702... 122 3.9e-05 1
TAIR|locus:2207405 - symbol:ECT8 "AT1G79270" species:3702... 121 5.6e-05 1
ZFIN|ZDB-GENE-040426-2786 - symbol:ythdf1 "YTH domain fam... 118 0.00016 1
TAIR|locus:2010494 - symbol:ECT9 "AT1G27960" species:3702... 114 0.00040 1
MGI|MGI:1917431 - symbol:Ythdf1 "YTH domain family 1" spe... 114 0.00042 1
>RGD|621706 [details] [associations]
symbol:Ythdc1 "YTH domain containing 1" species:10116 "Rattus
norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0016604 "nuclear body"
evidence=IDA] RGD:621706 GO:GO:0016604 GO:GO:0000398
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 CTD:91746
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
OrthoDB:EOG4ZW5BC EMBL:D78303 EMBL:AF144731 IPI:IPI00196301
IPI:IPI00213467 RefSeq:NP_596914.1 UniGene:Rn.48752
ProteinModelPortal:Q9QY02 SMR:Q9QY02 STRING:Q9QY02
PhosphoSite:Q9QY02 PRIDE:Q9QY02 GeneID:170956 KEGG:rno:170956
UCSC:RGD:621706 InParanoid:Q9QY02 NextBio:621483
ArrayExpress:Q9QY02 Genevestigator:Q9QY02
GermOnline:ENSRNOG00000001996 Uniprot:Q9QY02
Length = 738
Score = 379 (138.5 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 76/136 (55%), Positives = 95/136 (69%)
Query: 67 SQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAY 126
S V + KL +++R LI SN + + L K GVWSTLP NE+KLN A+
Sbjct: 337 SSSVRAVRKDQTSKLKSVLQDAR-FFLIKSNNHENVSLA-KAKGVWSTLPVNEKKLNLAF 394
Query: 127 RESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRK 186
R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+
Sbjct: 395 RSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRR 454
Query: 187 ELPFTSTLHLYNSWNE 202
ELPFT + HL N WNE
Sbjct: 455 ELPFTKSAHLTNPWNE 470
Score = 198 (74.8 bits), Expect = 9.0e-17, Sum P(2) = 9.0e-17
Identities = 37/60 (61%), Positives = 49/60 (81%)
Query: 37 DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
D +K+ + +DARFF+IKSNN ENV +AK++GVWSTLP NE+KLN A+R +R V+LIFS
Sbjct: 346 DQTSKLKSVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 405
Score = 44 (20.5 bits), Expect = 2.5e-36, Sum P(2) = 2.5e-36
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 13 VEVKKARSAEKVTARPEKPTIRTYD 37
+ + + S E ++PEKP +R D
Sbjct: 115 IRLSSSSSREPYKSQPEKPCLRKRD 139
Score = 40 (19.1 bits), Expect = 6.6e-36, Sum P(2) = 6.6e-36
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 16 KKARSAEKVTARPEKPTIRTYDYITK 41
+K+ E + + +KP+I + I+K
Sbjct: 47 RKSERMESIDTKRQKPSIHSRQLISK 72
>ZFIN|ZDB-GENE-041114-114 [details] [associations]
symbol:ythdc1 "YTH domain containing 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0003674 "molecular_function" evidence=ND]
ZFIN:ZDB-GENE-041114-114 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:91746 HOVERGEN:HBG055528 EMBL:BC085378
IPI:IPI00509525 RefSeq:NP_001007411.1 UniGene:Dr.84175
ProteinModelPortal:Q5U3V6 SMR:Q5U3V6 PRIDE:Q5U3V6 GeneID:492769
KEGG:dre:492769 InParanoid:Q5U3V6 NextBio:20865266 Bgee:Q5U3V6
Uniprot:Q5U3V6
Length = 679
Score = 384 (140.2 bits), Expect = 7.1e-35, P = 7.1e-35
Identities = 80/147 (54%), Positives = 98/147 (66%)
Query: 56 SNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTL 115
++ SE S V KL RE+R LI SN + + L K GVWSTL
Sbjct: 267 ASGSEKKHEKLSSSVRDVRKDRINKLKHILREAR-FFLIKSNNHENVSLA-KAKGVWSTL 324
Query: 116 PQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLN 175
P NE+KLN A+R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G++ K+L
Sbjct: 325 PVNEKKLNAAFRAARSVVLIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMNAKMLG 384
Query: 176 GVFKIDWVSRKELPFTSTLHLYNSWNE 202
GVFKIDW+ R+ELPFT T HL N WNE
Sbjct: 385 GVFKIDWICRRELPFTKTAHLANPWNE 411
Score = 205 (77.2 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 38/60 (63%), Positives = 50/60 (83%)
Query: 37 DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
D I K+ ++ R+ARFF+IKSNN ENV +AK++GVWSTLP NE+KLN A+R +R V+LIFS
Sbjct: 287 DRINKLKHILREARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNAAFRAARSVVLIFS 346
>UNIPROTKB|Q96MU7 [details] [associations]
symbol:YTHDC1 "YTH domain-containing protein 1"
species:9606 "Homo sapiens" [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
GO:GO:0016604 GO:GO:0000398 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AK056430 EMBL:AC074378 EMBL:BC041119
EMBL:BC053863 EMBL:AB075846 IPI:IPI00144293 IPI:IPI00376222
RefSeq:NP_001026902.1 RefSeq:NP_588611.2 UniGene:Hs.175955 PDB:2YUD
PDBsum:2YUD ProteinModelPortal:Q96MU7 SMR:Q96MU7 IntAct:Q96MU7
STRING:Q96MU7 PhosphoSite:Q96MU7 DMDM:47606762 PaxDb:Q96MU7
PRIDE:Q96MU7 Ensembl:ENST00000344157 Ensembl:ENST00000355665
GeneID:91746 KEGG:hsa:91746 UCSC:uc003hdx.3 UCSC:uc003hdy.3
CTD:91746 GeneCards:GC04M069176 HGNC:HGNC:30626 HPA:HPA036462
HPA:HPA036463 neXtProt:NX_Q96MU7 PharmGKB:PA143485673
eggNOG:NOG311295 HOGENOM:HOG000088650 HOVERGEN:HBG055528
InParanoid:Q96MU7 OMA:VIHKMRH OrthoDB:EOG4ZW5BC PhylomeDB:Q96MU7
ChiTaRS:YTHDC1 EvolutionaryTrace:Q96MU7 GenomeRNAi:91746
NextBio:77419 Bgee:Q96MU7 CleanEx:HS_YTHDC1 Genevestigator:Q96MU7
GermOnline:ENSG00000083896 Uniprot:Q96MU7
Length = 727
Score = 378 (138.1 bits), Expect = 4.2e-34, P = 4.2e-34
Identities = 76/136 (55%), Positives = 95/136 (69%)
Query: 67 SQGVWSTLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAY 126
S V + KL +++R LI SN + + L K GVWSTLP NE+KLN A+
Sbjct: 334 SSSVRAVRKDQTSKLKYVLQDAR-FFLIKSNNHENVSLA-KAKGVWSTLPVNEKKLNLAF 391
Query: 127 RESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRK 186
R +R+V+LIFSVRESGKF GFARL+SE+ HG SP+ WVLP G+S K+L GVFKIDW+ R+
Sbjct: 392 RSARSVILIFSVRESGKFQGFARLSSESHHGGSPIHWVLPAGMSAKMLGGVFKIDWICRR 451
Query: 187 ELPFTSTLHLYNSWNE 202
ELPFT + HL N WNE
Sbjct: 452 ELPFTKSAHLTNPWNE 467
Score = 207 (77.9 bits), Expect = 1.1e-15, P = 1.1e-15
Identities = 38/60 (63%), Positives = 50/60 (83%)
Query: 37 DYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
D +K+ Y+ +DARFF+IKSNN ENV +AK++GVWSTLP NE+KLN A+R +R V+LIFS
Sbjct: 343 DQTSKLKYVLQDARFFLIKSNNHENVSLAKAKGVWSTLPVNEKKLNLAFRSARSVILIFS 402
>FB|FBgn0027616 [details] [associations]
symbol:YT521-B "YT521-B" species:7227 "Drosophila
melanogaster" [GO:0016604 "nuclear body" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] EMBL:AE014296 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 FlyBase:FBgn0027616 UniGene:Dm.7409 GeneID:38420
KEGG:dme:Dmel_CG12076 CTD:38420 GeneTree:ENSGT00690000102240
GenomeRNAi:38420 NextBio:808571 RefSeq:NP_647811.2
ProteinModelPortal:Q9VZQ1 SMR:Q9VZQ1 IntAct:Q9VZQ1
EnsemblMetazoa:FBtr0073078 UCSC:CG12076-RA InParanoid:Q9VZQ1
OMA:ADYMRNM PhylomeDB:Q9VZQ1 ArrayExpress:Q9VZQ1 Bgee:Q9VZQ1
Uniprot:Q9VZQ1
Length = 721
Score = 356 (130.4 bits), Expect = 9.9e-32, P = 9.9e-32
Identities = 69/125 (55%), Positives = 93/125 (74%)
Query: 80 KLNQAYRESRDVLLIFSNYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVR 139
KLN +R++R LI SN + +L+ K VW+TLPQN+ LNQA++E+RNVLLIFSV
Sbjct: 246 KLNYLFRDTR-FFLIKSNNSDNVQLS-KNKSVWATLPQNDANLNQAFKEARNVLLIFSVN 303
Query: 140 ESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNS 199
ESGKF+GFAR+A+ + + V WVLPP +S K L GV ++DW+ RKEL F +TLHL+N+
Sbjct: 304 ESGKFAGFARMAAPSRRDIPQVAWVLPPSISPKALGGVIELDWICRKELSFNATLHLHNT 363
Query: 200 WNEGE 204
WNEG+
Sbjct: 364 WNEGK 368
Score = 242 (90.2 bits), Expect = 2.0e-19, P = 2.0e-19
Identities = 42/61 (68%), Positives = 56/61 (91%)
Query: 36 YDYITKINYLFRDARFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIF 95
YDY+TK+NYLFRD RFF+IKSNNS+NV ++K++ VW+TLPQN+ LNQA++E+R+VLLIF
Sbjct: 241 YDYMTKLNYLFRDTRFFLIKSNNSDNVQLSKNKSVWATLPQNDANLNQAFKEARNVLLIF 300
Query: 96 S 96
S
Sbjct: 301 S 301
>UNIPROTKB|E2QZR7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 GO:GO:0008026
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 OMA:RAFWESS
EMBL:AAEX03007702 Ensembl:ENSCAFT00000000357 Uniprot:E2QZR7
Length = 1376
Score = 218 (81.8 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 45/95 (47%), Positives = 61/95 (64%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1254 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1308
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++WV ++ LPF HL N WN+ +
Sbjct: 1309 AG--LGGVFKVEWVRKESLPFQFAHHLLNPWNDNK 1341
Score = 140 (54.3 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 24/47 (51%), Positives = 38/47 (80%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FS
Sbjct: 1235 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFS 1281
Score = 36 (17.7 bits), Expect = 2.6e-17, Sum P(2) = 2.6e-17
Identities = 12/44 (27%), Positives = 20/44 (45%)
Query: 20 SAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVD 63
SA++ T +PE RT +T+ L D V ++V+
Sbjct: 416 SAQENTFKPESQRQRTVPNVTEEYDLLDDGGDAVFSQLTEKDVN 459
>UNIPROTKB|F1NS70 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001650 InterPro:IPR007502 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF04408 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:AADN02056192 EMBL:AADN02056193
IPI:IPI00591470 Ensembl:ENSGALT00000000247 Uniprot:F1NS70
Length = 1339
Score = 224 (83.9 bits), Expect = 4.2e-17, P = 4.2e-17
Identities = 47/95 (49%), Positives = 62/95 (65%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NEQKLN+A+ ES V LIFSV+ SG F GFAR++SE S W G
Sbjct: 1215 GIWSTTPSNEQKLNRAFWESSLVYLIFSVQGSGHFQGFARMSSEIGCEQSQC-W----GS 1269
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++W+ ++ +PF T HL N WN+ +
Sbjct: 1270 TG--LGGVFKVEWIRKESIPFQFTHHLLNPWNDNK 1302
Score = 150 (57.9 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 27/47 (57%), Positives = 39/47 (82%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS+N +N+DI++ +G+WST P NEQKLN+A+ ES V LIFS
Sbjct: 1196 RYFIMKSSNLQNLDISQQKGIWSTTPSNEQKLNRAFWESSLVYLIFS 1242
>UNIPROTKB|F1RLG0 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR002110 InterPro:IPR001650
InterPro:IPR007502 Pfam:PF00271 Pfam:PF04408 PROSITE:PS50088
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 GO:GO:0004386
InterPro:IPR014001 PROSITE:PS51192 GeneTree:ENSGT00700000104393
InterPro:IPR011709 Pfam:PF07717 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 OMA:RAFWESS EMBL:CU462841
Ensembl:ENSSSCT00000015529 Uniprot:F1RLG0
Length = 1151
Score = 217 (81.4 bits), Expect = 1.9e-16, P = 1.9e-16
Identities = 44/95 (46%), Positives = 61/95 (64%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1029 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1083
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++W+ ++ LPF HL N WN+ +
Sbjct: 1084 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1116
Score = 140 (54.3 bits), Expect = 6.5e-07, P = 6.5e-07
Identities = 24/47 (51%), Positives = 38/47 (80%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FS
Sbjct: 1010 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFS 1056
>UNIPROTKB|F1MNU7 [details] [associations]
symbol:YTHDC2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS50088 PROSITE:PS51061 PROSITE:PS51194
SMART:SM00248 SMART:SM00490 SMART:SM00847 GO:GO:0005524
Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796 SUPFAM:SSF48403
PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00700000104393 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 CTD:64848 OMA:RAFWESS EMBL:DAAA02027655
IPI:IPI00689346 RefSeq:NP_001179740.1 UniGene:Bt.24975
ProteinModelPortal:F1MNU7 Ensembl:ENSBTAT00000018745 GeneID:541024
KEGG:bta:541024 NextBio:20878969 Uniprot:F1MNU7
Length = 1429
Score = 217 (81.4 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 44/95 (46%), Positives = 61/95 (64%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1307 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1361
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++W+ ++ LPF HL N WN+ +
Sbjct: 1362 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1394
Score = 140 (54.3 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 24/47 (51%), Positives = 38/47 (80%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FS
Sbjct: 1288 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFS 1334
>MGI|MGI:2448561 [details] [associations]
symbol:Ythdc2 "YTH domain containing 2" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
MGI:MGI:2448561 GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683
Pfam:PF12796 SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643
GeneTree:ENSGT00700000104393 InterPro:IPR011709 Pfam:PF07717
GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
CTD:64848 HOGENOM:HOG000155703 OMA:RAFWESS OrthoDB:EOG4JWVCN
EMBL:BC138263 EMBL:BC171951 IPI:IPI00343249 RefSeq:NP_001156485.1
UniGene:Mm.244482 ProteinModelPortal:B2RR83 SMR:B2RR83
PhosphoSite:B2RR83 PaxDb:B2RR83 PRIDE:B2RR83
Ensembl:ENSMUST00000037763 GeneID:240255 KEGG:mmu:240255
UCSC:uc008evb.2 InParanoid:B2RR83 ChiTaRS:YTHDC2 NextBio:384522
Bgee:B2RR83 Genevestigator:B2RR83 Uniprot:B2RR83
Length = 1445
Score = 217 (81.4 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 44/95 (46%), Positives = 61/95 (64%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1323 GIWSTTPSNERKLNRAFWESSMVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1377
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++W+ ++ LPF HL N WN+ +
Sbjct: 1378 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1410
Score = 140 (54.3 bits), Expect = 8.5e-07, P = 8.5e-07
Identities = 24/47 (51%), Positives = 38/47 (80%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FS
Sbjct: 1304 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSMVYLVFS 1350
>UNIPROTKB|Q9H6S0 [details] [associations]
symbol:YTHDC2 "Probable ATP-dependent RNA helicase YTHDC2"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR002110
InterPro:IPR001374 InterPro:IPR001650 InterPro:IPR007502
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01424
Pfam:PF04408 PROSITE:PS00690 PROSITE:PS50088 PROSITE:PS51061
PROSITE:PS51194 SMART:SM00248 SMART:SM00490 SMART:SM00847
GO:GO:0005524 Gene3D:1.25.40.20 InterPro:IPR020683 Pfam:PF12796
SUPFAM:SSF48403 PROSITE:PS50297 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 eggNOG:COG1643 InterPro:IPR011709
Pfam:PF07717 GO:GO:0008026 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AC093208 EMBL:AC010389 EMBL:BC137285
EMBL:AK025593 IPI:IPI00010200 RefSeq:NP_073739.3 UniGene:Hs.231942
PDB:2YU6 PDBsum:2YU6 ProteinModelPortal:Q9H6S0 SMR:Q9H6S0
IntAct:Q9H6S0 PhosphoSite:Q9H6S0 DMDM:239938805 PaxDb:Q9H6S0
PeptideAtlas:Q9H6S0 PRIDE:Q9H6S0 Ensembl:ENST00000161863
GeneID:64848 KEGG:hsa:64848 UCSC:uc003kqn.3 CTD:64848
GeneCards:GC05P112877 HGNC:HGNC:24721 HPA:HPA037364
neXtProt:NX_Q9H6S0 PharmGKB:PA134912676 HOGENOM:HOG000155703
HOVERGEN:HBG063891 InParanoid:Q9H6S0 OMA:RAFWESS OrthoDB:EOG4JWVCN
PhylomeDB:Q9H6S0 EvolutionaryTrace:Q9H6S0 GenomeRNAi:64848
NextBio:66962 ArrayExpress:Q9H6S0 Bgee:Q9H6S0 CleanEx:HS_YTHDC2
Genevestigator:Q9H6S0 GermOnline:ENSG00000047188 Uniprot:Q9H6S0
Length = 1430
Score = 216 (81.1 bits), Expect = 3.2e-16, P = 3.2e-16
Identities = 44/95 (46%), Positives = 61/95 (64%)
Query: 110 GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGL 169
G+WST P NE+KLN+A+ ES V L+FSV+ SG F GF+R++SE S W G
Sbjct: 1308 GIWSTTPSNERKLNRAFWESSIVYLVFSVQGSGHFQGFSRMSSEIGREKSQ-DW----GS 1362
Query: 170 SGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
+G L GVFK++W+ ++ LPF HL N WN+ +
Sbjct: 1363 AG--LGGVFKVEWIRKESLPFQFAHHLLNPWNDNK 1395
Score = 140 (54.3 bits), Expect = 8.4e-07, P = 8.4e-07
Identities = 24/47 (51%), Positives = 38/47 (80%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS+N N++I++ +G+WST P NE+KLN+A+ ES V L+FS
Sbjct: 1289 RYFIMKSSNLRNLEISQQKGIWSTTPSNERKLNRAFWESSIVYLVFS 1335
>TAIR|locus:2028175 [details] [associations]
symbol:CPSF30 "AT1G30460" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0005516 "calmodulin binding" evidence=IDA] [GO:0005847 "mRNA
cleavage and polyadenylation specificity factor complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=RCA;IDA;TAS]
[GO:0004519 "endonuclease activity" evidence=IDA] [GO:0004521
"endoribonuclease activity" evidence=IDA] [GO:0006378 "mRNA
polyadenylation" evidence=IMP] [GO:0006979 "response to oxidative
stress" evidence=IMP] [GO:1900363 "regulation of mRNA
polyadenylation" evidence=IMP] [GO:0000278 "mitotic cell cycle"
evidence=RCA] [GO:0006397 "mRNA processing" evidence=RCA]
InterPro:IPR000571 PROSITE:PS50103 SMART:SM00356 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0006979 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006378 EMBL:AC009917 GO:GO:0003723
GO:GO:0005516 GO:GO:0004521 eggNOG:COG5084 GO:GO:0005847 KO:K14404
EMBL:EU250988 EMBL:AY140901 IPI:IPI00527840 IPI:IPI00846485
PIR:B86429 PIR:C86429 RefSeq:NP_001077629.1 RefSeq:NP_174334.2
UniGene:At.40546 UniGene:At.69479 ProteinModelPortal:A9LNK9
SMR:A9LNK9 IntAct:A9LNK9 STRING:A9LNK9 PaxDb:A9LNK9 PRIDE:A9LNK9
EnsemblPlants:AT1G30460.1 GeneID:839925 KEGG:ath:AT1G30460
TAIR:At1g30460 HOGENOM:HOG000242019 InParanoid:A9LNK9 OMA:AKMTSRI
PhylomeDB:A9LNK9 ProtClustDB:CLSN2714254 Genevestigator:A9LNK9
GO:GO:1900363 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
Uniprot:A9LNK9
Length = 631
Score = 152 (58.6 bits), Expect = 2.9e-09, P = 2.9e-09
Identities = 42/127 (33%), Positives = 62/127 (48%)
Query: 82 NQAYRESRDVLLIFSNYYV---SNELNFKV---YGVWSTLPQNEQKLNQAYRESRNVLLI 135
+Q R S + + Y+V +N NF++ GVW+T NE KLN+A+ NV+LI
Sbjct: 223 DQTNRTSHPLPQGVNRYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILI 282
Query: 136 FSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLH 195
FSV + F G A++ S + W G + N F + W+ EL F T +
Sbjct: 283 FSVNRTRHFQGCAKMTSRIGGYIGGGNWKHEHGTAQYGRN--FSVKWLKLCELSFHKTRN 340
Query: 196 LYNSWNE 202
L N +NE
Sbjct: 341 LRNPYNE 347
Score = 137 (53.3 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+FV+KSNN EN +++ QGVW+T NE KLN+A+ +V+LIFS
Sbjct: 238 RYFVVKSNNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFS 284
>TAIR|locus:2118046 [details] [associations]
symbol:AT4G11970 "AT4G11970" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] EMBL:CP002687 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 UniGene:At.48848 UniGene:At.68491 IPI:IPI00541281
RefSeq:NP_192934.2 ProteinModelPortal:F4JPV2 SMR:F4JPV2
PRIDE:F4JPV2 EnsemblPlants:AT4G11970.1 GeneID:826804
KEGG:ath:AT4G11970 OMA:GIWATQV PhylomeDB:F4JPV2 Uniprot:F4JPV2
Length = 444
Score = 149 (57.5 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 39/113 (34%), Positives = 56/113 (49%)
Query: 96 SNYYVSNELNF---KVY---GVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFAR 149
+ Y++ LN+ +V G+W+T NE L A+ +S V+LIFSV SG F G+A
Sbjct: 72 TRYFIIKSLNYDNIQVSVEKGIWATQVMNEPILEGAFHKSGRVILIFSVNMSGFFQGYAE 131
Query: 150 LASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNE 202
+ S + W G + FK+ W+ ELPF TLHL N N+
Sbjct: 132 MLSPVGWRRDQI-WSQGGGKNNP-WGRSFKVKWLRLSELPFQKTLHLKNPLND 182
>ASPGD|ASPL0000015049 [details] [associations]
symbol:AN10537 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:BN001302 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
EnsemblFungi:CADANIAT00004356 HOGENOM:HOG000179786 Uniprot:C8V3R8
Length = 630
Score = 113 (44.8 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 21/50 (42%), Positives = 35/50 (70%)
Query: 103 ELNFKVYGVWSTLPQNEQKLNQAYRESRNVLLIFSVRESGKFSGFARLAS 152
EL+++ G+W+T NE+ LN+A+ + NV L FS +SG++ G+AR+ S
Sbjct: 433 ELSWQS-GIWATQTHNEESLNRAFENADNVYLFFSANKSGEYYGYARMMS 481
Score = 103 (41.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 50 RFFVIKSNNSENVDIAKSQGVWSTLPQNEQKLNQAYRESRDVLLIFS 96
R+F++KS E+++++ G+W+T NE+ LN+A+ + +V L FS
Sbjct: 420 RYFILKSLTVEDLELSWQSGIWATQTHNEESLNRAFENADNVYLFFS 466
Score = 63 (27.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 146 GFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWN 201
G R A H + + P L +++ F+I W+S + +PF T L N WN
Sbjct: 545 GLPRQHKNAYHPPNEQQSQAPAEL--QLIGKPFRIRWLSTERVPFHRTRGLRNPWN 598
>TAIR|locus:2095938 [details] [associations]
symbol:ECT1 "evolutionarily conserved C-terminal region
1" species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019722 "calcium-mediated signaling" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] GO:GO:0005634 EMBL:CP002686 GO:GO:0019722
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
HOGENOM:HOG000238171 EMBL:AY894117 EMBL:AK317103 IPI:IPI00657449
RefSeq:NP_001030629.1 UniGene:At.27388 SMR:Q3MK94 IntAct:Q3MK94
EnsemblPlants:AT3G03950.3 GeneID:819550 KEGG:ath:AT3G03950
TAIR:At3g03950 eggNOG:NOG299038 OMA:YYEAKEN ProtClustDB:CLSN2688051
Genevestigator:Q3MK94 Uniprot:Q3MK94
Length = 428
Score = 123 (48.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 44/174 (25%), Positives = 75/174 (43%)
Query: 41 KINYLFRDARFFVIKSN---NSENVDIAKSQGVWSTLPQ-NEQKLNQAYRESRDVLLIFS 96
++N L R R K+ NS +D K L + N + +++ +++ +
Sbjct: 194 RLNELCRGPRSSDFKNPQVLNSSMLDAMKQDVSAVDLQRYNGENFPESFVKAK--FFVIK 251
Query: 97 NYYVSNELNFKVYGVWSTLPQNEQKLNQAYRESRN------VLLIFSVRESGKFSGFARL 150
+Y + N YG WS+ P +KLN AY E++ V L+FSV SG+F G A +
Sbjct: 252 SYSEDDVHNCIKYGAWSSTPTGNKKLNAAYYEAKENSQECPVYLLFSVNASGQFVGLAEM 311
Query: 151 ASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHLYNSWNEGE 204
D + W + G F + W K++P + H+ + NE +
Sbjct: 312 VGPVDFNKTMEYWQQDKWI------GCFPVKWHIIKDIPNSLLRHITLANNENK 359
>TAIR|locus:2159391 [details] [associations]
symbol:ECT3 "AT5G61020" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0005829 "cytosol" evidence=RCA] EMBL:CP002688
InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882 IPI:IPI00547508
RefSeq:NP_851236.1 UniGene:At.21835 UniGene:At.70904 PRIDE:F4K1Z0
EnsemblPlants:AT5G61020.1 GeneID:836223 KEGG:ath:AT5G61020
OMA:HASKTCI Uniprot:F4K1Z0
Length = 495
Score = 122 (48.0 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 35/139 (25%), Positives = 66/139 (47%)
Query: 75 PQNEQKLN--QAYRESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYRESRN 131
P++ K++ + Y E++ ++ Y ++++ + Y VWS+ P +KL+ +Y E++
Sbjct: 246 PKDYNKIDFPETYTEAKFYVI---KSYSEDDIHKSIKYSVWSSTPNGNKKLDASYNEAKQ 302
Query: 132 ------VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSR 185
V L+FSV SG+F G A + D + W + G F + W
Sbjct: 303 KSDGCPVFLLFSVNTSGQFVGLAEMVGPVDFNKTVEYWQQDKWI------GCFPVKWHFV 356
Query: 186 KELPFTSTLHLYNSWNEGE 204
K++P +S H+ NE +
Sbjct: 357 KDIPNSSLRHITLENNENK 375
>TAIR|locus:2207405 [details] [associations]
symbol:ECT8 "AT1G79270" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0009611 "response to wounding" evidence=RCA]
[GO:0009805 "coumarin biosynthetic process" evidence=RCA]
[GO:0009963 "positive regulation of flavonoid biosynthetic process"
evidence=RCA] EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 EMBL:AF326910 EMBL:AY113874 IPI:IPI00530579
RefSeq:NP_565205.1 UniGene:At.25521 UniGene:At.48393
ProteinModelPortal:Q9FPE7 SMR:Q9FPE7 IntAct:Q9FPE7 STRING:Q9FPE7
PRIDE:Q9FPE7 EnsemblPlants:AT1G79270.1 GeneID:844267
KEGG:ath:AT1G79270 TAIR:At1g79270 InParanoid:Q9FPE7 OMA:TNGECES
PhylomeDB:Q9FPE7 ProtClustDB:CLSN2917492 ArrayExpress:Q9FPE7
Genevestigator:Q9FPE7 Uniprot:Q9FPE7
Length = 528
Score = 121 (47.7 bits), Expect = 5.6e-05, P = 5.6e-05
Identities = 51/204 (25%), Positives = 82/204 (40%)
Query: 15 VKKARSAEKVTARPEKPTIRTYDYITKINYLFRDARFFVIKSNNSENVDIA---KSQGVW 71
VKK +S EK RT + T +N L S ++D +S GV
Sbjct: 243 VKK-KSGALNRDETEKAKARTKENGTSMNDLANGQDHITNGECESCSLDAEGNERSNGVG 301
Query: 72 STLPQNEQKLNQAYRESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYRESR 130
S + +++ L + + + Y ++++ + Y VWS+ +KL+ AY+ES+
Sbjct: 302 SVIRRDQYNLPSFQTKYEEAIFFVIKSYSEDDIHKSIKYNVWSSTLNGNKKLDSAYQESQ 361
Query: 131 N----------VLLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKI 180
V L FSV SG+F G A + D+ S W K G F +
Sbjct: 362 KKAADKSGKCPVFLFFSVNASGQFCGVAEMIGRVDYEKSMEFWQ-----QDK-WTGYFPV 415
Query: 181 DWVSRKELPFTSTLHLYNSWNEGE 204
W K++P H+ NE +
Sbjct: 416 KWHIIKDVPNPQLRHIILENNENK 439
>ZFIN|ZDB-GENE-040426-2786 [details] [associations]
symbol:ythdf1 "YTH domain family, member 1"
species:7955 "Danio rerio" [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND]
ZFIN:ZDB-GENE-040426-2786 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
CTD:54915 HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
EMBL:BX649575 EMBL:CR759927 EMBL:BC046885 IPI:IPI00501109
RefSeq:NP_997878.1 UniGene:Dr.116333 Ensembl:ENSDART00000025171
GeneID:327606 KEGG:dre:327606 InParanoid:Q802Z0 OMA:PSMTDPY
NextBio:20810106 Uniprot:Q802Z0
Length = 614
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 34/124 (27%), Positives = 59/124 (47%)
Query: 77 NEQKLNQAYRESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYRESRN---V 132
N ++ + + R V +I S Y ++++ + Y +W + ++L+ A+R V
Sbjct: 418 NPKEFDWNLKNGR-VFIIKS--YSEDDIHRSIKYSIWCSTEHGNKRLDSAFRAINGKGPV 474
Query: 133 LLIFSVRESGKFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTS 192
L+FSV SG F G A + S D+G S W K G F +DW+ K++P +
Sbjct: 475 YLLFSVNGSGHFCGVAEMRSPVDYGTSAGVWA-----QDK-WKGKFDVDWLFVKDVPNSQ 528
Query: 193 TLHL 196
H+
Sbjct: 529 LRHI 532
>TAIR|locus:2010494 [details] [associations]
symbol:ECT9 "AT1G27960" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0016571 "histone methylation" evidence=RCA]
EMBL:CP002684 InterPro:IPR007275 Pfam:PF04146 PROSITE:PS50882
eggNOG:NOG276347 EMBL:BT022109 IPI:IPI00540009 RefSeq:NP_174117.2
UniGene:At.40970 ProteinModelPortal:Q500V8 SMR:Q500V8
EnsemblPlants:AT1G27960.1 GeneID:839689 KEGG:ath:AT1G27960
TAIR:At1g27960 InParanoid:Q500V8 OMA:DIFISCE PhylomeDB:Q500V8
ProtClustDB:CLSN2918485 Genevestigator:Q500V8 Uniprot:Q500V8
Length = 539
Score = 114 (45.2 bits), Expect = 0.00040, P = 0.00040
Identities = 27/89 (30%), Positives = 47/89 (52%)
Query: 3 SLCNIMVSLCVEVKKARSAEKVTARPEKPTIRTYDYITKINYL--FRDARFFVIKSNNSE 60
S C M+ + E + A ++ ++ + + D + L FRDA+FFVIKS + +
Sbjct: 282 SHCPAMLDMLTESNRGPRASRLNSKSKMISYDRVDRFCQQELLSQFRDAKFFVIKSYSED 341
Query: 61 NVDIAKSQGVWSTLPQNEQKLNQAYRESR 89
NV + VW++ +KL+ AYRE++
Sbjct: 342 NVHKSIKHCVWASTKNGNKKLDAAYREAK 370
>MGI|MGI:1917431 [details] [associations]
symbol:Ythdf1 "YTH domain family 1" species:10090 "Mus
musculus" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] MGI:MGI:1917431 InterPro:IPR007275 Pfam:PF04146
PROSITE:PS50882 eggNOG:NOG276347 GeneTree:ENSGT00390000017549
EMBL:AK046768 EMBL:AK172582 EMBL:BC061479 EMBL:BC065050
IPI:IPI00187444 RefSeq:NP_776122.1 UniGene:Mm.30205
ProteinModelPortal:P59326 SMR:P59326 STRING:P59326
PhosphoSite:P59326 PaxDb:P59326 PRIDE:P59326
Ensembl:ENSMUST00000037299 GeneID:228994 KEGG:mmu:228994 CTD:54915
HOGENOM:HOG000232058 HOVERGEN:HBG060315 OrthoDB:EOG4894M9
ChiTaRS:YTHDF1 NextBio:379293 Bgee:P59326 CleanEx:MM_YTHDF1
Genevestigator:P59326 GermOnline:ENSMUSG00000038848 Uniprot:P59326
Length = 559
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 32/114 (28%), Positives = 54/114 (47%)
Query: 87 ESRDVLLIFSNYYVSNELNFKV-YGVWSTLPQNEQKLNQAYRESRN---VLLIFSVRESG 142
+S V +I S Y ++++ + Y +W + ++L+ A+R + V L+FSV SG
Sbjct: 387 KSGRVFIIKS--YSEDDIHRSIKYSIWCSTEHGNKRLDGAFRSMSSKGPVYLLFSVNGSG 444
Query: 143 KFSGFARLASEADHGVSPVKWVLPPGLSGKVLNGVFKIDWVSRKELPFTSTLHL 196
F G A + S D+G S W S G F + W+ K++P H+
Sbjct: 445 HFCGVAEMKSPVDYGTSAGVW------SQDKWKGKFDVKWIFVKDVPNNQLRHI 492
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.132 0.399 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 211 211 0.00081 112 3 11 22 0.38 33
31 0.48 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 19
No. of states in DFA: 613 (65 KB)
Total size of DFA: 198 KB (2109 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 19.47u 0.08s 19.55t Elapsed: 00:00:06
Total cpu time: 19.47u 0.08s 19.55t Elapsed: 00:00:06
Start: Thu Aug 15 10:59:45 2013 End: Thu Aug 15 10:59:51 2013