BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy8693
(282 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|B Chain B, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
pdb|3MAX|C Chain C, Crystal Structure Of Human Hdac2 Complexed With An
N-(2-Amin Benzamide
Length = 367
Score = 275 bits (703), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/164 (84%), Positives = 149/164 (90%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D +DIGAGKGKYYAVN P+RDG+DDESY IF PIISKVME +QPSAVVLQCGADSL+GD
Sbjct: 204 DLRDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGD 263
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
RLGCFNLTV+GH KCVE VK +NLP LM+GGGGYTIRNV+RCWTYET+VAL EI NELP
Sbjct: 264 RLGCFNLTVKGHAKCVEVVKTFNLPLLMLGGGGYTIRNVARCWTYETAVALDCEIPNELP 323
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
YNDYFEYFGPDFKLHISPSNM NQNTPEY+EKIK RLFENLRML
Sbjct: 324 YNDYFEYFGPDFKLHISPSNMTNQNTPEYMEKIKQRLFENLRML 367
Score = 124 bits (311), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 57/68 (83%), Positives = 63/68 (92%)
Query: 211 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 270
+DIGAGKGKYYAVN P+RDG+DDESY IF PIISKVME +QPSAVVLQCGADSL+GDRL
Sbjct: 206 RDIGAGKGKYYAVNFPMRDGIDDESYGQIFKPIISKVMEMYQPSAVVLQCGADSLSGDRL 265
Query: 271 GCFNLTVR 278
GCFNLTV+
Sbjct: 266 GCFNLTVK 273
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
pdb|4A69|B Chain B, Structure Of Hdac3 Bound To Corepressor And Inositol
Tetraphosphate
Length = 376
Score = 234 bits (598), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 101/172 (58%), Positives = 141/172 (81%), Gaps = 1/172 (0%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D ++GA G+YY +N+PLRDG+DD+SY+ +F P+I++V++ +QP+ +VLQCGADSL D
Sbjct: 205 DMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCD 264
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
RLGCFNL++RGHG+CVE+VK +N+P L++GGGGYT+RNV+RCWTYETS+ + I+ ELP
Sbjct: 265 RLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISEELP 324
Query: 144 YNDYFEYFGPDFKLHISPSN-MANQNTPEYLEKIKTRLFENLRMLPHAPGVQ 194
Y++YFEYF PDF LH S + NQN+ +YL++I+ +FENL+ML HAP VQ
Sbjct: 325 YSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ 376
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 39/67 (58%), Positives = 58/67 (86%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
++GA G+YY +N+PLRDG+DD+SY+ +F P+I++V++ +QP+ +VLQCGADSL DRLG
Sbjct: 208 EVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVVDFYQPTCIVLQCGADSLGCDRLG 267
Query: 272 CFNLTVR 278
CFNL++R
Sbjct: 268 CFNLSIR 274
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant.
pdb|3F06|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101a Variant
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant
pdb|3EZP|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101n Variant
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 112/164 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
+++F +GPD+ L I+PS ++N P +++I + NL+ +
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|B Chain B, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|C Chain C, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate.
pdb|3EWF|D Chain D, Crystal Structure Analysis Of Human Hdac8 H143a Variant
Complexed With Substrate
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ4|B Chain B, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344
pdb|3MZ6|A Chain A, Crystal Structure Of D101l Fe2+ Hdac8 Complexed With M344
pdb|3MZ7|A Chain A, Crystal Structure Of D101l Co2+ Hdac8 Complexed With M344
Length = 389
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3MZ3|B Chain B, Crystal Structure Of Co2+ Hdac8 Complexed With M344
pdb|3RQD|A Chain A, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
pdb|3RQD|B Chain B, Ideal Thiolate-Zinc Coordination Geometry In Depsipeptide
Binding To Histone Deacetylase 8
Length = 389
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 112/164 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
+++F +GPD+ L I+PS ++N P +++I + NL+ +
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F07|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Apha In A New Monoclinic Crystal Form
pdb|3F0R|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|B Chain B, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
pdb|3F0R|C Chain C, Crystal Structure Analysis Of Human Hdac8 Complexed With
Trichostatin A In A New Monoclinic Crystal Form
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 112/164 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
+++F +GPD+ L I+PS ++N P +++I + NL+ +
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex
pdb|2V5X|B Chain B, Crystal Structure Of Hdac8-Inhibitor Complex
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 112/164 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
+++F +GPD+ L I+PS ++N P +++I + NL+ +
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T64|B Chain B, Crystal Structure Of Human Hdac8 Complexed With
Trichostatin A
pdb|1T67|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Ms-344
pdb|1T69|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Saha
pdb|1VKG|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1VKG|B Chain B, Crystal Structure Of Human Hdac8 Complexed With Cra-19156
pdb|1W22|A Chain A, Crystal Structure Of Inhibited Human Hdac8
pdb|1W22|B Chain B, Crystal Structure Of Inhibited Human Hdac8
Length = 377
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant
pdb|3EZT|B Chain B, Crystal Structure Analysis Of Human Hdac8 D101e Variant
Length = 388
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/164 (42%), Positives = 112/164 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
+++F +GPD+ L I+PS ++N P +++I + NL+ +
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 376
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
pdb|3SFH|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An
Amino Acid Derived Inhibitor
Length = 378
Score = 159 bits (401), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 214 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 273
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+P
Sbjct: 274 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIP 333
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 334 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 375
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 217 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 276
Query: 272 CFNLT 276
FN+T
Sbjct: 277 SFNMT 281
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex
pdb|2V5W|B Chain B, Crystal Structure Of Hdac8-Substrate Complex
Length = 388
Score = 157 bits (397), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 68/162 (41%), Positives = 111/162 (68%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD
Sbjct: 213 DVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGD 272
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
+ FN+T G GKC++++ ++ L L++GGGG+ + N +RCWTY T V LG +++E+P
Sbjct: 273 PMCSFNMTPVGIGKCLKYILQWQLATLILGGGGFNLANTARCWTYLTGVILGKTLSSEIP 332
Query: 144 YNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLR 185
+++F +GPD+ L I+PS ++N P +++I + NL+
Sbjct: 333 DHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 374
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 32/65 (49%), Positives = 47/65 (72%)
Query: 212 DIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG 271
D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ GD +
Sbjct: 216 DVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAGDPMC 275
Query: 272 CFNLT 276
FN+T
Sbjct: 276 SFNMT 280
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3R|B Chain B, Crystal Structure Of An Hdac Homolog Complexed With
Trichostatin A
pdb|1C3S|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Saha
Length = 375
Score = 58.5 bits (140), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%)
Query: 26 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 85
++IG GKGK Y +NIPL G++D + + V E F+P +LQ G D L D L
Sbjct: 206 EEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYL 265
Query: 86 GCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANEL 142
FNL+ K V+ + +GGGGY ++R WT G E+ +L
Sbjct: 266 SKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKL 322
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 211 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 270
++IG GKGK Y +NIPL G++D + + V E F+P +LQ G D L D L
Sbjct: 206 EEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYL 265
Query: 271 GCFNLT 276
FNL+
Sbjct: 266 SKFNLS 271
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus
Length = 375
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%)
Query: 26 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 85
++IG GKGK Y +NIPL G++D + + V E F+P +LQ G D L D L
Sbjct: 206 EEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYL 265
Query: 86 GCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANEL 142
FNL+ K V+ + +GGGGY ++R WT G E+ +L
Sbjct: 266 SKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKL 322
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 37/66 (56%)
Query: 211 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 270
++IG GKGK Y +NIPL G++D + + V E F+P +LQ G D L D L
Sbjct: 206 EEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLEDYL 265
Query: 271 GCFNLT 276
FNL+
Sbjct: 266 SKFNLS 271
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|B Chain B, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|C Chain C, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
pdb|3MEN|D Chain D, Crystal Structure Of Acetylpolyamine Aminohydrolase From
Burkholderia Pseudomallei, Iodide Soak
Length = 362
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 7/98 (7%)
Query: 29 GAGKGKYYAVNIPLRDGMDDESYESIFVPIIS---KVMETFQPSAVVLQCGADSLTGDRL 85
GAG+G Y VN+P+ G S E+ F + + + F P A+VL G D D
Sbjct: 254 GAGEGLGYNVNLPMPHG----SSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDDPQ 309
Query: 86 GCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVS 123
+T G G+ + LP ++V GGY I ++
Sbjct: 310 SQVAVTTDGFGRLGHLIGALRLPTVIVQEGGYHIESLE 347
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 7/58 (12%)
Query: 214 GAGKGKYYAVNIPLRDGMDDESYESIFVPIIS---KVMETFQPSAVVLQCGADSLTGD 268
GAG+G Y VN+P+ G S E+ F + + + F P A+VL G D D
Sbjct: 254 GAGEGLGYNVNLPMPHG----SSEAAFFERVDDALRELRRFAPDALVLSLGFDVYRDD 307
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|B Chain B, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|C Chain C, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ0|D Chain D, Crystal Structure Of A Hdac-Like Protein With Acetate
Bound
pdb|1ZZ1|A Chain A, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|B Chain B, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|C Chain C, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ1|D Chain D, Crystal Structure Of A Hdac-Like Protein With Saha Bound
pdb|1ZZ3|A Chain A, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|B Chain B, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|C Chain C, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|1ZZ3|D Chain D, Crystal Structure Of A Hdac-Like Protein With Cypx Bound
pdb|2GH6|A Chain A, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|B Chain B, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|C Chain C, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
pdb|2GH6|D Chain D, Crystal Structure Of A Hdac-Like Protein With
9,9,9-Trifluoro-8-Oxo-N- Phenylnonan Amide Bound
Length = 369
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 29 GAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCF 88
GAG G Y +N+PL G + +Y ++ + ++P +++ G D+ D L
Sbjct: 219 GAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM 278
Query: 89 NLTVRG 94
+T G
Sbjct: 279 MVTADG 284
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 214 GAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCF 273
GAG G Y +N+PL G + +Y ++ + ++P +++ G D+ D L
Sbjct: 219 GAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM 278
Query: 274 NLTV 277
+T
Sbjct: 279 MVTA 282
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|B Chain B, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|C Chain C, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
pdb|2VCG|D Chain D, Crystal Structure Of A Hdac-like Protein Hdah From
Bordetella Sp. With The Bound Inhibitor St-17
Length = 375
Score = 34.7 bits (78), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 29 GAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCF 88
GAG G Y +N+PL G + +Y ++ + ++P +++ G D+ D L
Sbjct: 225 GAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM 284
Query: 89 NLTVRG 94
+T G
Sbjct: 285 MVTADG 290
Score = 33.5 bits (75), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/64 (25%), Positives = 30/64 (46%)
Query: 214 GAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCF 273
GAG G Y +N+PL G + +Y ++ + ++P +++ G D+ D L
Sbjct: 225 GAGNGHGYNINVPLPPGSGNAAYLHAMDQVVLPALRAYRPQLIIVGSGFDASMLDPLARM 284
Query: 274 NLTV 277
+T
Sbjct: 285 MVTA 288
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Y|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7
pdb|3C0Z|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C0Z|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Saha
pdb|3C10|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|B Chain B, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
pdb|3C10|C Chain C, Crystal Structure Of Catalytic Domain Of Human Histone
Deacetylase Hdac7 In Complex With Trichostatin A (Tsa)
Length = 423
Score = 34.7 bits (78), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 27 DIGAGKGKYYAVNIPLRDGMD----DESYESIFVPIISKVMETFQPSAVVLQCGADSLTG 82
++GAG G+ + VN+ G+D D Y + F ++ + F P V++ G D+ G
Sbjct: 266 EVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEG 325
Query: 83 D--RLGCFNLTVRGHG 96
LG ++++ + G
Sbjct: 326 HPAPLGGYHVSAKCFG 341
Score = 34.3 bits (77), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 212 DIGAGKGKYYAVNIPLRDGMD----DESYESIFVPIISKVMETFQPSAVVLQCGADSLTG 267
++GAG G+ + VN+ G+D D Y + F ++ + F P V++ G D+ G
Sbjct: 266 EVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEG 325
Query: 268 D--RLGCFNLTVR 278
LG ++++ +
Sbjct: 326 HPAPLGGYHVSAK 338
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|B Chain B, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|C Chain C, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|D Chain D, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|E Chain E, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|F Chain F, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|G Chain G, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|H Chain H, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|I Chain I, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|J Chain J, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|K Chain K, Crystal Structure Of Apah Complexed With M344
pdb|3Q9B|L Chain L, Crystal Structure Of Apah Complexed With M344
pdb|3Q9F|A Chain A, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|B Chain B, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|C Chain C, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|D Chain D, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|E Chain E, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|F Chain F, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|G Chain G, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|H Chain H, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|I Chain I, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|J Chain J, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|K Chain K, Crystal Structure Of Apah Complexed With Caps
pdb|3Q9F|L Chain L, Crystal Structure Of Apah Complexed With Caps
Length = 341
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 26 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 85
++ G G G N P+ G + + ++ F A+V+ G D+ D +
Sbjct: 233 EETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIA-AFGAEAIVVSLGVDTFEQDPI 291
Query: 86 GCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNV 122
F LT + + +P L+V GGY + +
Sbjct: 292 SFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEI 328
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|B Chain B, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|C Chain C, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|D Chain D, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|E Chain E, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|F Chain F, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|G Chain G, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|H Chain H, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|I Chain I, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|J Chain J, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|K Chain K, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9C|L Chain L, Crystal Structure Of H159a Apah Complexed With
N8-Acetylspermidine
pdb|3Q9E|A Chain A, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|B Chain B, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|C Chain C, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|D Chain D, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|E Chain E, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|F Chain F, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|G Chain G, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|H Chain H, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|I Chain I, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|J Chain J, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|K Chain K, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
pdb|3Q9E|L Chain L, Crystal Structure Of H159a Apah Complexed With
Acetylspermine
Length = 341
Score = 32.0 bits (71), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 1/97 (1%)
Query: 26 QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRL 85
++ G G G N P+ G + + ++ F A+V+ G D+ D +
Sbjct: 233 EETGKGAGAGTTANYPMGRGTPYSVWGEALTDSLKRIA-AFGAEAIVVSLGVDTFEQDPI 291
Query: 86 GCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNV 122
F LT + + +P L+V GGY + +
Sbjct: 292 SFFKLTSPDYITMGRTIAASGVPLLVVMEGGYGVPEI 328
>pdb|3P01|A Chain A, Crystal Structure Of Two-Component Response Regulator
From Nostoc Sp. Pcc 7120
pdb|3P01|B Chain B, Crystal Structure Of Two-Component Response Regulator
From Nostoc Sp. Pcc 7120
pdb|3P01|C Chain C, Crystal Structure Of Two-Component Response Regulator
From Nostoc Sp. Pcc 7120
Length = 184
Score = 31.6 bits (70), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 8 ANFIVNDRDQTWDLLHDK-QDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETF 66
+N +V +T+DLL + +++ + + + ++ S E+I PI + E+F
Sbjct: 1 SNAVVQRAAETYDLLKQRTEELRRANAQXSLLTVLVQVTQASNSLEAILTPIATAFAESF 60
Query: 67 QPSAVVLQ 74
+A +LQ
Sbjct: 61 AVNACILQ 68
>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
A Resolution
Length = 494
Score = 30.0 bits (66), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 56 VPIISKVMETFQPSAVVLQCGADSL---TGDRLGCFNLTVRGHG--------KCVEFVKR 104
+P+++ + T + + +++ GAD++ G C V G G +C E ++
Sbjct: 279 LPVVAGNVATPEGTEALIKAGADAVKVGVGPGSICTTRVVAGVGVPQLTAVMECSEVARK 338
Query: 105 YNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIA-NELPYNDYFEYFGPDFK 156
Y++P + GG Y+ V SV +GS A E + Y G +K
Sbjct: 339 YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYK 391
>pdb|4F53|A Chain A, Crystal Structure Of A Susd Homolog (Bacova_04803) From
Bacteroides Ovatus Atcc 8483 At 2.25 A Resolution
pdb|4F53|B Chain B, Crystal Structure Of A Susd Homolog (Bacova_04803) From
Bacteroides Ovatus Atcc 8483 At 2.25 A Resolution
Length = 520
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 121 NVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRL 180
N+ W+ + S+ ++P+ND++ F PD+ N+ NQ+ E L
Sbjct: 66 NLGTGWSGRYATYNPSDDWKKIPFNDFYSKFYPDY------FNLKNQSDDELF----LSL 115
Query: 181 FENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAG 216
E R++ V ++V+ GPI PY +GA
Sbjct: 116 AELYRIV-----VXLRVTDTYGPI----PYSKVGAA 142
>pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae
Length = 553
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 99 VEFVKRYNLPFLMV---GGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYF 148
++ KR P ++ GGGG IR V R E +AL + ANE+P + F
Sbjct: 226 LQKAKRIGFPVMIKASEGGGGKGIRQVER---EEDFIALYHQAANEIPGSPIF 275
>pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
Complex With Soraphen A
Length = 554
Score = 28.9 bits (63), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 99 VEFVKRYNLPFLMV---GGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYF 148
++ KR P ++ GGGG IR V R E +AL + ANE+P + F
Sbjct: 227 LQKAKRIGFPVMIKASEGGGGKGIRQVER---EEDFIALYHQAANEIPGSPIF 276
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 47 DDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRG 94
+D++ I P+ KV+E P V G +T D G N+T +G
Sbjct: 41 NDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPGYENMTFKG 88
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 47 DDESYESIFVPIISKVMETFQPSAVV 72
DE Y+++ +P++ K++E FQ +A+
Sbjct: 75 QDEMYQALILPLVDKLLEGFQCTALA 100
Score = 28.1 bits (61), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 232 DDESYESIFVPIISKVMETFQPSAVV 257
DE Y+++ +P++ K++E FQ +A+
Sbjct: 75 QDEMYQALILPLVDKLLEGFQCTALA 100
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 47 DDESYESIFVPIISKVMETFQPSAVV 72
DE Y+++ +P++ K++E FQ +A+
Sbjct: 75 QDEMYQALILPLVDKLLEGFQCTALA 100
Score = 28.1 bits (61), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 19/26 (73%)
Query: 232 DDESYESIFVPIISKVMETFQPSAVV 257
DE Y+++ +P++ K++E FQ +A+
Sbjct: 75 QDEMYQALILPLVDKLLEGFQCTALA 100
>pdb|2NMT|A Chain A, Myristoyl-Coa:protein N-Myristoyltransferase Bound To
Myristoyl-Coa And Peptide Analogs
pdb|1IIC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IIC|B Chain B, Crystal Structure Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoylcoa
pdb|1IID|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae N-
Myristoyltransferase With Bound S-(2-Oxo)pentadecylcoa
And The Octapeptide Glyaskla
Length = 422
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 49 ESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTV-RGHGKCVEFVKRYNL 107
+ Y+S F I E F+ + + G +SL D+ F+ V + GK +F Y+L
Sbjct: 244 KRYQSRFELIQIFTKEEFEHNFI----GEESLPLDKQVIFSYVVEQPDGKITDFFSFYSL 299
Query: 108 PFLMVGGGGYTIRNVSRCWTYET 130
PF ++ Y + + Y T
Sbjct: 300 PFTILNNTKYKDLGIGYLYYYAT 322
>pdb|2P6E|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6E|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa
pdb|2P6F|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6F|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|A Chain A, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|B Chain B, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|C Chain C, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|D Chain D, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|E Chain E, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
pdb|2P6G|F Chain F, Crystal Structures Of Saccharomyces Cerevisiae
N-Myristoyltransferase With Bound Myristoyl-Coa And
Inhibitors
Length = 455
Score = 27.7 bits (60), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 49 ESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTV-RGHGKCVEFVKRYNL 107
+ Y+S F I E F+ + + G +SL D+ F+ V + GK +F Y+L
Sbjct: 277 KRYQSRFELIQIFTKEEFEHNFI----GEESLPLDKQVIFSYVVEQPDGKITDFFSFYSL 332
Query: 108 PFLMVGGGGYTIRNVSRCWTYET 130
PF ++ Y + + Y T
Sbjct: 333 PFTILNNTKYKDLGIGYLYYYAT 355
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,332,952
Number of Sequences: 62578
Number of extensions: 420569
Number of successful extensions: 840
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 788
Number of HSP's gapped (non-prelim): 58
length of query: 282
length of database: 14,973,337
effective HSP length: 98
effective length of query: 184
effective length of database: 8,840,693
effective search space: 1626687512
effective search space used: 1626687512
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)