Query psy8693
Match_columns 282
No_of_seqs 350 out of 2812
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:49:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8693.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/8693hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00063 histone deacetylase; 100.0 5E-54 1.1E-58 409.0 20.7 201 1-201 183-386 (436)
2 KOG1342|consensus 100.0 2.9E-53 6.4E-58 388.3 17.2 199 2-200 185-385 (425)
3 PTZ00346 histone deacetylase; 100.0 4.5E-47 9.8E-52 359.5 19.0 185 1-185 200-391 (429)
4 COG0123 AcuC Deacetylases, inc 100.0 4.1E-37 8.9E-42 286.9 15.8 136 1-137 172-313 (340)
5 PF00850 Hist_deacetyl: Histon 100.0 1.3E-37 2.8E-42 288.5 11.0 133 1-133 171-310 (311)
6 KOG1343|consensus 100.0 1.5E-29 3.2E-34 255.1 11.7 137 1-138 211-357 (797)
7 KOG1343|consensus 99.9 4E-25 8.7E-30 223.2 15.2 140 1-140 618-762 (797)
8 PTZ00346 histone deacetylase; 99.9 1.8E-24 3.9E-29 205.6 8.1 111 153-281 187-297 (429)
9 PTZ00063 histone deacetylase; 99.9 7.6E-24 1.6E-28 202.4 11.0 110 153-281 170-279 (436)
10 COG0123 AcuC Deacetylases, inc 99.9 2.2E-23 4.7E-28 194.8 7.8 108 153-281 159-268 (340)
11 PF00850 Hist_deacetyl: Histon 99.9 7.6E-24 1.6E-28 196.5 3.0 111 153-281 158-269 (311)
12 KOG1342|consensus 99.8 3.8E-19 8.3E-24 164.1 3.8 211 48-281 67-281 (425)
13 KOG1344|consensus 99.4 3.1E-12 6.7E-17 111.9 9.0 83 38-120 219-305 (324)
14 KOG1344|consensus 98.7 2.2E-08 4.7E-13 88.0 5.9 60 222-281 218-277 (324)
15 cd01835 SGNH_hydrolase_like_3 85.5 4.9 0.00011 33.8 8.0 74 38-112 41-117 (193)
16 cd04502 SGNH_hydrolase_like_7 84.8 2.5 5.3E-05 34.9 5.7 68 37-112 25-95 (171)
17 cd01836 FeeA_FeeB_like SGNH_hy 83.7 2.6 5.6E-05 35.4 5.5 67 37-112 43-112 (191)
18 cd04237 AAK_NAGS-ABP AAK_NAGS- 82.3 3.5 7.6E-05 37.8 6.1 63 50-120 1-63 (280)
19 cd01825 SGNH_hydrolase_peri1 S 81.3 7.5 0.00016 32.2 7.4 71 37-113 27-103 (189)
20 COG1618 Predicted nucleotide k 80.9 6.4 0.00014 33.6 6.6 32 82-113 106-137 (179)
21 cd01832 SGNH_hydrolase_like_1 78.6 7.7 0.00017 32.1 6.6 63 45-113 46-112 (185)
22 cd01822 Lysophospholipase_L1_l 77.4 11 0.00023 30.9 7.1 66 37-113 39-108 (177)
23 PF02310 B12-binding: B12 bind 76.9 7.3 0.00016 30.2 5.6 48 59-117 43-90 (121)
24 cd00840 MPP_Mre11_N Mre11 nucl 76.3 15 0.00033 31.2 8.0 59 48-114 23-84 (223)
25 cd01828 sialate_O-acetylestera 75.2 11 0.00024 30.8 6.6 46 60-112 42-93 (169)
26 cd04501 SGNH_hydrolase_like_4 74.8 12 0.00026 31.0 6.8 69 37-113 34-103 (183)
27 cd01443 Cdc25_Acr2p Cdc25 enzy 74.6 20 0.00043 27.6 7.5 66 37-118 42-109 (113)
28 cd02068 radical_SAM_B12_BD B12 72.3 16 0.00035 28.8 6.6 50 56-117 28-77 (127)
29 TIGR02855 spore_yabG sporulati 71.9 10 0.00022 34.8 5.9 59 57-116 143-207 (283)
30 PRK05279 N-acetylglutamate syn 71.8 13 0.00027 36.3 7.0 65 49-121 7-71 (441)
31 cd01841 NnaC_like NnaC (CMP-Ne 70.6 16 0.00034 30.0 6.4 69 37-112 26-96 (174)
32 cd01844 SGNH_hydrolase_like_6 69.1 12 0.00027 31.0 5.5 49 59-112 49-99 (177)
33 TIGR01890 N-Ac-Glu-synth amino 68.0 9.7 0.00021 37.0 5.3 61 51-119 1-61 (429)
34 cd01820 PAF_acetylesterase_lik 67.6 6.5 0.00014 33.9 3.6 66 37-112 63-134 (214)
35 cd01830 XynE_like SGNH_hydrola 67.2 13 0.00028 31.7 5.4 72 37-111 42-124 (204)
36 PF05582 Peptidase_U57: YabG p 66.6 16 0.00035 33.7 6.0 59 57-116 144-208 (287)
37 cd07388 MPP_Tt1561 Thermus the 65.3 33 0.00071 30.4 7.7 56 53-118 18-73 (224)
38 cd01838 Isoamyl_acetate_hydrol 65.3 13 0.00028 30.9 5.0 52 60-112 53-113 (199)
39 PF13472 Lipase_GDSL_2: GDSL-l 65.1 3.3 7.1E-05 33.3 1.2 77 37-118 33-113 (179)
40 cd01829 SGNH_hydrolase_peri2 S 64.9 48 0.001 27.7 8.5 54 60-113 52-115 (200)
41 cd01833 XynB_like SGNH_hydrola 63.5 21 0.00045 28.7 5.7 39 61-105 34-76 (157)
42 PRK14476 nitrogenase molybdenu 62.6 42 0.0009 33.0 8.5 69 53-132 78-152 (455)
43 CHL00202 argB acetylglutamate 62.2 26 0.00057 32.1 6.7 63 50-119 6-68 (284)
44 PRK10528 multifunctional acyl- 62.0 42 0.00091 28.4 7.6 65 37-112 46-114 (191)
45 COG0420 SbcD DNA repair exonuc 61.4 40 0.00088 32.0 8.1 63 47-118 21-86 (390)
46 TIGR00583 mre11 DNA repair pro 61.4 42 0.00092 32.5 8.2 49 48-104 24-72 (405)
47 cd01972 Nitrogenase_VnfE_like 60.3 44 0.00094 32.4 8.2 64 53-126 75-140 (426)
48 PF04321 RmlD_sub_bind: RmlD s 59.3 2.6 5.6E-05 38.5 -0.5 55 58-112 42-99 (286)
49 cd01835 SGNH_hydrolase_like_3 59.1 13 0.00027 31.2 3.8 41 223-264 41-81 (193)
50 PRK11148 cyclic 3',5'-adenosin 59.0 45 0.00098 30.0 7.6 58 52-119 39-97 (275)
51 PF10609 ParA: ParA/MinD ATPas 58.5 44 0.00096 24.9 6.1 56 40-114 6-61 (81)
52 PF02585 PIG-L: GlcNAc-PI de-N 57.1 28 0.0006 27.3 5.3 42 38-79 71-112 (128)
53 cd02067 B12-binding B12 bindin 55.5 47 0.001 25.7 6.3 35 61-106 44-78 (119)
54 cd01821 Rhamnogalacturan_acety 55.5 41 0.00089 28.3 6.4 45 67-112 65-113 (198)
55 cd00229 SGNH_hydrolase SGNH_hy 55.2 36 0.00079 26.6 5.8 79 37-118 38-118 (187)
56 KOG1321|consensus 54.9 68 0.0015 30.3 7.9 121 112-254 97-223 (395)
57 PLN02825 amino-acid N-acetyltr 54.5 30 0.00065 34.7 6.0 62 51-120 1-62 (515)
58 COG1091 RfbD dTDP-4-dehydrorha 54.1 23 0.0005 32.7 4.8 64 59-122 42-117 (281)
59 TIGR02026 BchE magnesium-proto 50.5 49 0.0011 32.8 6.9 47 59-117 55-101 (497)
60 cd06558 crotonase-like Crotona 50.2 75 0.0016 26.5 7.2 70 45-114 21-101 (195)
61 PRK07854 enoyl-CoA hydratase; 50.1 79 0.0017 28.1 7.6 75 37-115 14-95 (243)
62 cd06167 LabA_like LabA_like pr 50.0 69 0.0015 25.6 6.7 41 63-118 95-135 (149)
63 COG4671 Predicted glycosyl tra 49.6 25 0.00055 33.6 4.4 31 230-260 84-114 (400)
64 TIGR01278 DPOR_BchB light-inde 49.6 34 0.00074 34.1 5.6 58 53-120 71-129 (511)
65 PF13472 Lipase_GDSL_2: GDSL-l 49.6 16 0.00035 29.1 2.8 39 222-262 33-71 (179)
66 PRK09674 enoyl-CoA hydratase-i 48.9 78 0.0017 28.2 7.4 75 38-115 17-101 (255)
67 cd01967 Nitrogenase_MoFe_alpha 48.3 1E+02 0.0022 29.4 8.5 64 53-126 73-138 (406)
68 PRK04531 acetylglutamate kinas 48.2 37 0.0008 32.9 5.4 53 60-120 24-80 (398)
69 cd07402 MPP_GpdQ Enterobacter 47.9 87 0.0019 27.0 7.4 60 48-118 20-81 (240)
70 PF02585 PIG-L: GlcNAc-PI de-N 47.8 47 0.001 26.0 5.2 27 238-264 86-112 (128)
71 TIGR00619 sbcd exonuclease Sbc 47.5 1.1E+02 0.0024 27.4 8.1 62 50-122 23-88 (253)
72 PF09936 Methyltrn_RNA_4: SAM- 47.0 1.3E+02 0.0027 26.1 7.8 56 55-119 90-145 (185)
73 cd01971 Nitrogenase_VnfN_like 46.9 96 0.0021 30.1 8.1 59 53-121 72-131 (427)
74 cd01839 SGNH_arylesterase_like 46.5 53 0.0011 27.8 5.7 36 65-105 77-117 (208)
75 PF13277 YmdB: YmdB-like prote 46.4 43 0.00092 30.5 5.2 61 52-122 12-72 (253)
76 PRK07511 enoyl-CoA hydratase; 46.4 66 0.0014 28.7 6.5 76 38-115 18-107 (260)
77 PLN02512 acetylglutamate kinas 46.1 68 0.0015 29.8 6.7 65 48-119 28-92 (309)
78 cd02065 B12-binding_like B12 b 45.9 72 0.0016 24.4 6.0 15 62-76 45-59 (125)
79 TIGR02370 pyl_corrinoid methyl 45.9 68 0.0015 27.6 6.3 36 61-107 129-164 (197)
80 cd01965 Nitrogenase_MoFe_beta_ 45.8 1.3E+02 0.0029 29.0 9.0 57 53-119 67-129 (428)
81 PRK07658 enoyl-CoA hydratase; 45.4 82 0.0018 28.0 7.0 77 37-115 16-103 (257)
82 KOG4184|consensus 45.2 19 0.00042 34.3 2.9 23 236-259 223-245 (478)
83 cd01827 sialate_O-acetylestera 45.1 58 0.0013 26.8 5.7 37 65-105 65-105 (188)
84 PRK08138 enoyl-CoA hydratase; 44.9 75 0.0016 28.5 6.7 78 37-114 22-106 (261)
85 PRK06495 enoyl-CoA hydratase; 44.7 73 0.0016 28.4 6.5 78 37-115 18-106 (257)
86 PF14606 Lipase_GDSL_3: GDSL-l 44.1 42 0.00091 28.8 4.6 64 37-118 36-105 (178)
87 PRK10966 exonuclease subunit S 44.1 1.1E+02 0.0024 29.5 8.1 61 50-119 23-86 (407)
88 cd03466 Nitrogenase_NifN_2 Nit 43.3 1.2E+02 0.0025 29.5 8.1 56 53-118 70-130 (429)
89 PRK06190 enoyl-CoA hydratase; 42.6 1.2E+02 0.0025 27.3 7.5 78 37-115 18-103 (258)
90 COG1692 Calcineurin-like phosp 42.5 62 0.0014 29.4 5.5 59 52-120 15-73 (266)
91 CHL00076 chlB photochlorophyll 42.1 1.2E+02 0.0025 30.4 8.1 61 53-122 71-132 (513)
92 PHA02546 47 endonuclease subun 42.0 1.4E+02 0.003 28.0 8.2 61 49-118 22-87 (340)
93 PF06925 MGDG_synth: Monogalac 41.9 30 0.00066 28.7 3.4 24 235-258 72-95 (169)
94 KOG4184|consensus 41.8 30 0.00065 33.1 3.5 22 52-74 224-245 (478)
95 cd01981 Pchlide_reductase_B Pc 41.5 1E+02 0.0023 29.7 7.5 58 53-120 71-130 (430)
96 PF06925 MGDG_synth: Monogalac 40.9 32 0.00069 28.6 3.4 24 50-73 72-95 (169)
97 KOG1432|consensus 40.3 87 0.0019 29.9 6.3 49 58-115 91-143 (379)
98 cd07384 MPP_Cdc1_like Saccharo 39.9 1.4E+02 0.0031 24.9 7.2 18 57-74 35-52 (171)
99 cd06533 Glyco_transf_WecG_TagA 39.7 1.1E+02 0.0023 25.7 6.5 47 59-119 91-137 (171)
100 TIGR03189 dienoyl_CoA_hyt cycl 39.6 92 0.002 27.8 6.3 77 37-115 15-98 (251)
101 TIGR01285 nifN nitrogenase mol 39.4 1.7E+02 0.0037 28.4 8.6 67 53-130 77-149 (432)
102 COG4671 Predicted glycosyl tra 39.3 46 0.00099 32.0 4.4 29 46-74 85-113 (400)
103 PF03808 Glyco_tran_WecB: Glyc 39.3 1.2E+02 0.0025 25.5 6.6 44 61-118 95-138 (172)
104 CHL00073 chlN photochlorophyll 39.2 74 0.0016 31.4 6.0 56 54-118 84-140 (457)
105 PRK00994 F420-dependent methyl 39.0 73 0.0016 28.9 5.3 50 54-115 47-96 (277)
106 COG1891 Uncharacterized protei 38.7 73 0.0016 27.6 5.1 50 223-273 84-134 (235)
107 cd07396 MPP_Nbla03831 Homo sap 38.6 1.2E+02 0.0025 27.2 6.9 59 53-119 27-85 (267)
108 PRK05862 enoyl-CoA hydratase; 38.1 1.3E+02 0.0028 26.9 7.0 79 37-115 18-103 (257)
109 PF01993 MTD: methylene-5,6,7, 37.9 1.1E+02 0.0023 27.9 6.2 50 54-115 46-95 (276)
110 cd07399 MPP_YvnB Bacillus subt 37.9 1.6E+02 0.0035 25.4 7.5 56 50-114 19-77 (214)
111 PF14639 YqgF: Holliday-juncti 37.6 28 0.00062 28.9 2.5 29 231-259 42-70 (150)
112 cd01979 Pchlide_reductase_N Pc 37.4 1.5E+02 0.0032 28.4 7.8 24 53-76 73-96 (396)
113 cd01825 SGNH_hydrolase_peri1 S 37.4 36 0.00078 28.0 3.2 18 246-263 50-67 (189)
114 cd07393 MPP_DR1119 Deinococcus 37.2 1.3E+02 0.0027 26.4 6.8 58 49-118 25-82 (232)
115 TIGR03445 mycothiol_MshB 1D-my 37.0 47 0.001 30.5 4.1 27 55-81 111-139 (284)
116 cd08165 MPP_MPPE1 human MPPE1 37.0 1.9E+02 0.004 23.8 7.4 18 57-74 28-45 (156)
117 PF09383 NIL: NIL domain; Int 36.9 11 0.00024 27.1 -0.0 51 57-107 17-71 (76)
118 PF00581 Rhodanese: Rhodanese- 36.7 66 0.0014 23.8 4.3 71 37-118 33-108 (113)
119 TIGR01279 DPOR_bchN light-inde 36.6 2.4E+02 0.0051 27.2 9.1 25 53-77 70-94 (407)
120 TIGR03282 methan_mark_13 putat 36.2 1.8E+02 0.0038 27.8 7.7 54 53-117 61-116 (352)
121 TIGR03445 mycothiol_MshB 1D-my 36.1 50 0.0011 30.4 4.1 27 241-267 112-140 (284)
122 COG2047 Uncharacterized protei 36.1 43 0.00092 30.0 3.4 46 67-119 83-128 (258)
123 PRK09856 fructoselysine 3-epim 36.0 54 0.0012 29.2 4.3 62 50-114 87-148 (275)
124 PRK06688 enoyl-CoA hydratase; 35.7 1.5E+02 0.0032 26.3 7.1 79 37-115 19-105 (259)
125 cd01840 SGNH_hydrolase_yrhL_li 35.3 1.1E+02 0.0024 24.6 5.7 45 58-112 40-85 (150)
126 COG1654 BirA Biotin operon rep 35.2 29 0.00064 25.7 2.0 52 75-126 15-67 (79)
127 PF14639 YqgF: Holliday-juncti 35.2 31 0.00068 28.6 2.4 30 45-74 41-70 (150)
128 PF09601 DUF2459: Protein of u 35.1 1.6E+02 0.0035 25.0 6.8 75 67-143 74-168 (173)
129 TIGR00696 wecB_tagA_cpsF bacte 35.1 1.4E+02 0.003 25.4 6.4 44 61-118 94-137 (177)
130 COG1891 Uncharacterized protei 34.5 43 0.00094 29.0 3.1 87 17-113 63-151 (235)
131 PRK07428 nicotinate-nucleotide 34.0 1.6E+02 0.0036 27.1 7.1 47 75-126 215-261 (288)
132 PRK06563 enoyl-CoA hydratase; 33.4 2E+02 0.0043 25.6 7.5 36 38-73 14-49 (255)
133 cd07383 MPP_Dcr2 Saccharomyces 33.3 2E+02 0.0043 24.3 7.2 52 59-114 33-84 (199)
134 PRK05995 enoyl-CoA hydratase; 33.3 1.6E+02 0.0035 26.2 6.9 78 37-114 18-107 (262)
135 cd02071 MM_CoA_mut_B12_BD meth 33.1 1.8E+02 0.0038 22.8 6.4 36 61-107 44-79 (122)
136 PF01729 QRPTase_C: Quinolinat 33.1 53 0.0011 27.8 3.5 48 74-126 98-145 (169)
137 cd01828 sialate_O-acetylestera 32.9 51 0.0011 26.8 3.3 35 223-263 25-59 (169)
138 PLN02725 GDP-4-keto-6-deoxyman 32.8 71 0.0015 28.5 4.5 53 59-111 41-98 (306)
139 TIGR03446 mycothiol_Mca mycoth 32.8 54 0.0012 30.2 3.8 20 54-73 108-127 (283)
140 PRK15005 universal stress prot 32.7 1.2E+02 0.0027 23.6 5.5 13 61-73 101-113 (144)
141 cd02070 corrinoid_protein_B12- 32.6 1.5E+02 0.0033 25.4 6.4 47 61-118 127-176 (201)
142 COG0299 PurN Folate-dependent 32.6 55 0.0012 28.6 3.5 26 237-263 64-89 (200)
143 TIGR00381 cdhD CO dehydrogenas 32.5 3E+02 0.0064 26.7 8.7 63 49-116 128-198 (389)
144 PRK09076 enoyl-CoA hydratase; 32.5 1.5E+02 0.0032 26.5 6.5 77 37-115 17-104 (258)
145 cd01966 Nitrogenase_NifN_1 Nit 32.3 2.5E+02 0.0053 27.2 8.4 70 53-133 67-142 (417)
146 COG2897 SseA Rhodanese-related 32.2 2.6E+02 0.0057 25.8 8.1 65 65-130 48-112 (285)
147 PRK07938 enoyl-CoA hydratase; 32.2 1.4E+02 0.003 26.6 6.2 77 37-114 16-102 (249)
148 PF00582 Usp: Universal stress 32.2 2.1E+02 0.0046 21.2 6.7 47 57-112 92-139 (140)
149 PF00148 Oxidored_nitro: Nitro 32.0 1.5E+02 0.0033 28.0 6.8 56 53-118 60-117 (398)
150 PRK09987 dTDP-4-dehydrorhamnos 32.0 58 0.0013 29.5 3.8 53 59-111 46-101 (299)
151 PRK07327 enoyl-CoA hydratase; 31.8 1.2E+02 0.0025 27.4 5.7 79 37-115 26-115 (268)
152 cd06533 Glyco_transf_WecG_TagA 31.7 55 0.0012 27.5 3.4 19 244-262 91-109 (171)
153 cd01834 SGNH_hydrolase_like_2 31.6 52 0.0011 26.9 3.2 48 63-112 57-110 (191)
154 cd02069 methionine_synthase_B1 31.6 1.5E+02 0.0031 26.0 6.1 47 61-118 133-180 (213)
155 TIGR02280 PaaB1 phenylacetate 30.8 1.3E+02 0.0029 26.7 5.9 77 38-115 14-102 (256)
156 cd04241 AAK_FomA-like AAK_FomA 30.5 1.2E+02 0.0027 26.7 5.7 49 71-120 2-51 (252)
157 PRK07110 polyketide biosynthes 30.2 2.3E+02 0.0049 25.1 7.3 68 45-115 27-103 (249)
158 TIGR03878 thermo_KaiC_2 KaiC d 30.2 1.3E+02 0.0028 26.9 5.8 51 55-114 119-174 (259)
159 PF09967 DUF2201: VWA-like dom 29.9 1.1E+02 0.0025 24.3 4.8 51 231-282 11-66 (126)
160 TIGR00024 SbcD_rel_arch putati 29.7 2.5E+02 0.0053 24.8 7.3 66 40-119 36-101 (225)
161 PRK08258 enoyl-CoA hydratase; 29.7 1.6E+02 0.0034 26.6 6.3 79 37-115 31-122 (277)
162 smart00450 RHOD Rhodanese Homo 29.6 1E+02 0.0023 21.8 4.3 23 96-118 70-92 (100)
163 TIGR00696 wecB_tagA_cpsF bacte 29.4 64 0.0014 27.5 3.4 20 243-262 91-110 (177)
164 PRK02261 methylaspartate mutas 29.4 1.5E+02 0.0033 24.0 5.5 36 61-107 48-83 (137)
165 PF02075 RuvC: Crossover junct 29.2 86 0.0019 25.8 4.1 33 41-73 32-64 (149)
166 cd00316 Oxidoreductase_nitroge 29.1 2.6E+02 0.0057 26.2 8.0 63 54-127 67-131 (399)
167 TIGR02015 BchY chlorophyllide 28.9 3E+02 0.0064 26.8 8.3 61 53-125 73-134 (422)
168 cd01832 SGNH_hydrolase_like_1 28.9 84 0.0018 25.8 4.0 14 250-263 65-78 (185)
169 PRK02842 light-independent pro 28.8 2.6E+02 0.0056 27.1 7.9 25 53-77 82-107 (427)
170 PF01408 GFO_IDH_MocA: Oxidore 28.7 1.4E+02 0.003 22.6 5.0 48 59-109 54-116 (120)
171 COG3172 NadR Predicted ATPase/ 28.7 2.3E+02 0.0051 24.3 6.5 62 58-119 105-169 (187)
172 PRK08290 enoyl-CoA hydratase; 28.6 2.4E+02 0.0052 25.7 7.3 44 37-80 18-68 (288)
173 PRK00039 ruvC Holliday junctio 28.4 1.3E+02 0.0027 25.4 5.0 25 50-74 44-68 (164)
174 cd01836 FeeA_FeeB_like SGNH_hy 28.2 58 0.0012 27.0 2.9 34 223-262 44-77 (191)
175 TIGR03446 mycothiol_Mca mycoth 28.0 74 0.0016 29.3 3.8 19 240-258 109-127 (283)
176 cd01973 Nitrogenase_VFe_beta_l 28.0 3E+02 0.0064 27.0 8.2 57 53-119 72-138 (454)
177 cd01974 Nitrogenase_MoFe_beta 28.0 2.6E+02 0.0056 27.1 7.8 57 53-119 71-133 (435)
178 PF10087 DUF2325: Uncharacteri 27.9 1.7E+02 0.0037 21.9 5.3 38 67-116 48-85 (97)
179 COG1409 Icc Predicted phosphoh 27.8 2.1E+02 0.0047 25.0 6.8 52 61-122 27-80 (301)
180 PRK08140 enoyl-CoA hydratase; 27.6 1.8E+02 0.0039 25.9 6.2 75 38-115 19-108 (262)
181 PRK07468 enoyl-CoA hydratase; 27.4 1.6E+02 0.0036 26.2 5.9 77 37-115 19-109 (262)
182 PRK06023 enoyl-CoA hydratase; 27.3 2.5E+02 0.0054 24.9 7.1 78 37-115 20-106 (251)
183 PF06866 DUF1256: Protein of u 27.3 1.5E+02 0.0032 25.2 5.1 52 48-108 5-56 (163)
184 PRK07659 enoyl-CoA hydratase; 27.1 1.7E+02 0.0036 26.2 5.9 78 37-115 20-107 (260)
185 COG1024 CaiD Enoyl-CoA hydrata 27.0 1.7E+02 0.0038 25.9 6.0 81 37-118 19-115 (257)
186 PRK06072 enoyl-CoA hydratase; 26.9 1.5E+02 0.0033 26.2 5.6 76 37-115 14-98 (248)
187 PRK12362 germination protease; 26.9 2.8E+02 0.006 26.2 7.3 59 28-87 55-118 (318)
188 PLN02267 enoyl-CoA hydratase/i 26.9 1.7E+02 0.0038 25.8 5.9 18 98-115 86-103 (239)
189 PF03808 Glyco_tran_WecB: Glyc 26.7 77 0.0017 26.6 3.4 19 244-262 93-111 (172)
190 TIGR02932 vnfK_nitrog V-contai 26.7 3.1E+02 0.0067 27.0 8.1 57 53-119 75-141 (457)
191 TIGR03210 badI 2-ketocyclohexa 26.5 3E+02 0.0064 24.5 7.4 20 96-115 84-103 (256)
192 PRK00942 acetylglutamate kinas 26.4 2.7E+02 0.0058 25.2 7.2 61 50-117 6-66 (283)
193 COG1712 Predicted dinucleotide 26.3 2.2E+02 0.0047 25.8 6.2 50 53-115 71-120 (255)
194 cd01518 RHOD_YceA Member of th 26.2 2E+02 0.0044 21.1 5.4 20 99-118 78-97 (101)
195 TIGR02931 anfK_nitrog Fe-only 26.2 2.8E+02 0.0061 27.3 7.7 63 54-127 79-152 (461)
196 PRK03692 putative UDP-N-acetyl 26.2 2.3E+02 0.0049 25.5 6.5 16 61-76 151-166 (243)
197 TIGR01501 MthylAspMutase methy 26.0 2.4E+02 0.0051 23.0 6.0 36 61-107 46-81 (134)
198 cd01822 Lysophospholipase_L1_l 26.0 1.2E+02 0.0025 24.5 4.4 17 247-263 59-75 (177)
199 TIGR01283 nifE nitrogenase mol 26.0 2.9E+02 0.0062 27.0 7.7 57 54-120 108-166 (456)
200 PRK08139 enoyl-CoA hydratase; 25.7 2E+02 0.0043 25.8 6.2 77 37-115 25-113 (266)
201 PF02075 RuvC: Crossover junct 25.6 1.1E+02 0.0024 25.1 4.1 32 227-258 33-64 (149)
202 PRK03580 carnitinyl-CoA dehydr 25.3 3E+02 0.0065 24.5 7.2 76 37-115 17-103 (261)
203 COG5105 MIH1 Mitotic inducer, 25.2 79 0.0017 30.0 3.3 46 67-118 303-353 (427)
204 KOG1529|consensus 25.2 3E+02 0.0065 25.5 7.1 19 100-118 107-125 (286)
205 PRK05864 enoyl-CoA hydratase; 25.1 2.5E+02 0.0053 25.4 6.7 77 37-115 24-118 (276)
206 PRK05674 gamma-carboxygeranoyl 24.8 2.7E+02 0.0058 24.9 6.8 77 37-113 20-108 (265)
207 TIGR01334 modD putative molybd 24.7 67 0.0015 29.5 2.9 48 73-125 205-252 (277)
208 cd02072 Glm_B12_BD B12 binding 24.6 2.4E+02 0.0053 22.8 5.8 46 61-117 44-90 (128)
209 cd00401 AdoHcyase S-adenosyl-L 24.5 1.3E+02 0.0029 29.3 5.0 55 43-100 91-155 (413)
210 TIGR00661 MJ1255 conserved hyp 24.4 1.4E+02 0.0031 27.3 5.0 36 61-115 87-122 (321)
211 PF01497 Peripla_BP_2: Peripla 24.2 2.5E+02 0.0055 23.8 6.4 57 63-137 56-112 (238)
212 TIGR00246 tRNA_RlmH_YbeA rRNA 24.1 4.2E+02 0.0091 22.0 8.9 51 61-120 58-108 (153)
213 PRK14477 bifunctional nitrogen 24.1 3.4E+02 0.0073 29.3 8.4 69 53-132 557-631 (917)
214 COG2236 Predicted phosphoribos 24.0 1.2E+02 0.0025 26.4 4.1 29 48-76 9-38 (192)
215 PRK00039 ruvC Holliday junctio 24.0 1.7E+02 0.0037 24.6 5.0 25 234-258 43-67 (164)
216 PRK07509 enoyl-CoA hydratase; 24.0 2.2E+02 0.0048 25.3 6.1 37 37-73 17-53 (262)
217 COG0299 PurN Folate-dependent 23.9 96 0.0021 27.2 3.5 25 52-77 64-88 (200)
218 PLN02260 probable rhamnose bio 23.8 88 0.0019 32.0 3.8 54 59-112 420-479 (668)
219 PRK07827 enoyl-CoA hydratase; 23.7 2.4E+02 0.0051 25.1 6.2 37 37-73 20-56 (260)
220 PRK14556 pyrH uridylate kinase 23.7 1.6E+02 0.0034 26.7 5.0 49 69-119 16-67 (249)
221 cd07410 MPP_CpdB_N Escherichia 23.7 1.1E+02 0.0023 27.5 4.0 49 63-112 39-89 (277)
222 cd01968 Nitrogenase_NifE_I Nit 23.6 4.1E+02 0.009 25.4 8.3 58 53-120 72-131 (410)
223 PF02310 B12-binding: B12 bind 23.5 88 0.0019 23.9 3.0 20 242-261 41-60 (121)
224 cd04502 SGNH_hydrolase_like_7 23.5 86 0.0019 25.5 3.1 40 222-266 25-65 (171)
225 PRK09814 beta-1,6-galactofuran 23.2 3.3E+02 0.0071 25.0 7.3 51 56-117 52-103 (333)
226 cd07359 PCA_45_Doxase_B_like S 23.1 5.4E+02 0.012 23.0 9.0 63 49-112 27-114 (271)
227 PRK07896 nicotinate-nucleotide 23.1 93 0.002 28.8 3.5 47 74-125 217-263 (289)
228 PRK08321 naphthoate synthase; 22.5 3.6E+02 0.0078 24.7 7.3 37 37-73 39-75 (302)
229 cd00984 DnaB_C DnaB helicase C 22.4 3.2E+02 0.0069 23.5 6.7 56 55-113 111-170 (242)
230 cd02651 nuc_hydro_IU_UC_XIUA n 22.4 74 0.0016 29.2 2.7 51 59-121 105-155 (302)
231 PRK11320 prpB 2-methylisocitra 22.3 2.8E+02 0.006 25.7 6.4 70 61-131 31-104 (292)
232 cd01841 NnaC_like NnaC (CMP-Ne 22.2 1.2E+02 0.0026 24.6 3.7 37 222-263 26-62 (174)
233 cd07368 PhnC_Bs_like PhnC is a 22.0 5.6E+02 0.012 23.2 8.4 27 48-75 28-54 (277)
234 TIGR01286 nifK nitrogenase mol 21.9 4.8E+02 0.01 26.2 8.5 57 53-119 128-190 (515)
235 PF00378 ECH: Enoyl-CoA hydrat 21.8 3E+02 0.0066 24.0 6.5 75 37-115 12-99 (245)
236 PRK11423 methylmalonyl-CoA dec 21.7 2.8E+02 0.006 24.8 6.3 76 37-114 18-104 (261)
237 PF03266 NTPase_1: NTPase; In 21.6 84 0.0018 26.4 2.7 55 53-116 79-135 (168)
238 cd01976 Nitrogenase_MoFe_alpha 21.4 4.9E+02 0.011 25.2 8.3 57 53-119 84-143 (421)
239 PRK08252 enoyl-CoA hydratase; 21.3 3.5E+02 0.0077 23.9 6.9 36 38-73 18-53 (254)
240 PRK04452 acetyl-CoA decarbonyl 21.2 5.9E+02 0.013 23.9 8.4 50 60-115 82-133 (319)
241 COG1082 IolE Sugar phosphate i 21.1 5.2E+02 0.011 22.5 7.9 63 58-121 49-112 (274)
242 TIGR01282 nifD nitrogenase mol 20.8 5.5E+02 0.012 25.3 8.6 57 53-119 117-176 (466)
243 COG0825 AccA Acetyl-CoA carbox 20.8 5.1E+02 0.011 24.3 7.6 71 38-118 126-202 (317)
244 PRK09120 p-hydroxycinnamoyl Co 20.7 2.3E+02 0.005 25.6 5.6 76 37-114 22-112 (275)
245 PRK05458 guanosine 5'-monophos 20.7 3.9E+02 0.0084 25.2 7.1 24 103-128 198-222 (326)
246 PRK03692 putative UDP-N-acetyl 20.6 1.1E+02 0.0024 27.4 3.4 19 244-262 149-167 (243)
247 PRK07657 enoyl-CoA hydratase; 20.6 3.8E+02 0.0082 23.8 6.9 79 37-115 18-106 (260)
248 TIGR00936 ahcY adenosylhomocys 20.5 1.8E+02 0.0038 28.4 4.9 50 43-98 87-146 (406)
249 cd07392 MPP_PAE1087 Pyrobaculu 20.5 3.8E+02 0.0083 21.6 6.6 42 63-114 19-60 (188)
250 smart00518 AP2Ec AP endonuclea 20.3 5.5E+02 0.012 22.5 7.9 36 92-127 83-118 (273)
251 TIGR00513 accA acetyl-CoA carb 20.0 3.7E+02 0.0081 25.2 6.8 50 90-139 132-191 (316)
No 1
>PTZ00063 histone deacetylase; Provisional
Probab=100.00 E-value=5e-54 Score=408.99 Aligned_cols=201 Identities=53% Similarity=1.000 Sum_probs=196.5
Q ss_pred CcccCCCeEEEEcCCCC-CCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCC
Q psy8693 1 MYLLNTNANFIVNDRDQ-TWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADS 79 (282)
Q Consensus 1 ~f~~dp~v~~~s~h~~~-~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~ 79 (282)
+||+||+|+|+|+|+++ ||||||..+++|.+.|+||++||||++|++|++|+.+|+++|.|++++|+||+||+|||+|+
T Consensus 183 ~F~~~~~VltvS~H~~~~ffPgtG~~~e~G~g~G~g~~vNvPL~~G~~D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~ 262 (436)
T PTZ00063 183 AFYVTHRVMTVSFHKFGDFFPGTGDVTDIGVAQGKYYSVNVPLNDGIDDDSFVDLFKPVISKCVEVYRPGAIVLQCGADS 262 (436)
T ss_pred HhccCCCeEEEEeccCCCcCCCCCCccccCCCCCCceEEEeeCCCCCCHHHHHHHHHHHHHHHHHHhCCCEEEEECCccc
Confidence 59999999999999997 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCC--CCcCCCCCCccccccCCCccc
Q psy8693 80 LTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGS--EIANELPYNDYFEYFGPDFKL 157 (282)
Q Consensus 80 ~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~--~~~~~~p~~~~~~~~~pdf~l 157 (282)
|.+||||.|+||.++|++|+++++++++|+++||||||+++++||||+++|++++|. +++.+||+|+||+.|+|+|++
T Consensus 263 ~~~DpLg~l~Lt~~g~~~~~~~~~~~~~pil~l~gGGY~~~~lar~w~~~t~~~~~~~~~~~~~iP~~~~~~~~~~~~~l 342 (436)
T PTZ00063 263 LTGDRLGRFNLTIKGHAACVEFVRSLNIPLLVLGGGGYTIRNVARCWAYETGVILNKHDEMSDQISLNDYYDYYAPDFQL 342 (436)
T ss_pred cCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEeCccCCchHHHHHHHHHHHHHhCCcccCCccCCCCcchhhcCCCeEe
Confidence 999999999999999999999999999999999999999999999999999999997 799999999999999999999
Q ss_pred ccCCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceeccccC
Q psy8693 158 HISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPII 201 (282)
Q Consensus 158 ~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p~~ 201 (282)
++.+++++|+|++++++++...++++|+++++.|++|++..|.+
T Consensus 343 ~~~~~~~~n~n~~~~l~~~~~~~~~~l~~~~~ap~v~~~~~~~~ 386 (436)
T PTZ00063 343 HLQPSNIPNYNSPEHLEKIKVKILENLRYLEHAPGVQFAYVPPD 386 (436)
T ss_pred ecCcccccCCCCHHHHHHHHHHHHHHHhcCCCCCeeccccCCcc
Confidence 99999999999999999999999999999999999999998874
No 2
>KOG1342|consensus
Probab=100.00 E-value=2.9e-53 Score=388.27 Aligned_cols=199 Identities=66% Similarity=1.168 Sum_probs=196.2
Q ss_pred cccCCCeEEEEcCCCC--CCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCC
Q psy8693 2 YLLNTNANFIVNDRDQ--TWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADS 79 (282)
Q Consensus 2 f~~dp~v~~~s~h~~~--~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~ 79 (282)
||.-.+|+++|.|.++ ||||||...++|.++|+.|+|||||.+|++|+.|..+|+++|.++++.|+|++||+|||+|+
T Consensus 185 Fy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDS 264 (425)
T KOG1342|consen 185 FYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPIISKVMERFQPEAIVLQCGADS 264 (425)
T ss_pred HhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCcc
Confidence 8889999999999985 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCCCCcCCCCCCccccccCCCccccc
Q psy8693 80 LTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYFEYFGPDFKLHI 159 (282)
Q Consensus 80 ~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~pdf~l~v 159 (282)
+.+|+||.||||.+|+++|++.++++++|+++|+||||+++++|||||++|+++++.+++.++|+++||+.|+|||++|+
T Consensus 265 L~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~~~elP~n~y~~yF~PDy~l~~ 344 (425)
T KOG1342|consen 265 LAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQELPNELPYNDYFEYFGPDYKLHI 344 (425)
T ss_pred ccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCccccccCCCccchhhhCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceecccc
Q psy8693 160 SPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPI 200 (282)
Q Consensus 160 ~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p~ 200 (282)
.++++.|+||.++++++...++++|+++.+.|++||+..|.
T Consensus 345 ~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~ 385 (425)
T KOG1342|consen 345 DPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPN 385 (425)
T ss_pred CccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCC
Confidence 99999999999999999999999999999999999998886
No 3
>PTZ00346 histone deacetylase; Provisional
Probab=100.00 E-value=4.5e-47 Score=359.50 Aligned_cols=185 Identities=33% Similarity=0.608 Sum_probs=169.5
Q ss_pred CcccCCCeEEEEcCCCC--CCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693 1 MYLLNTNANFIVNDRDQ--TWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD 78 (282)
Q Consensus 1 ~f~~dp~v~~~s~h~~~--~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D 78 (282)
+||+||+|+|+|+|+++ ||||||..+++|.|+|+||++|||||+|++|++|+++|+++|.|++++|+||+||||||||
T Consensus 200 iF~~dp~Vl~vSiHq~~~~fyPgtG~~~e~G~g~G~g~~vNVPL~~G~~D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~D 279 (429)
T PTZ00346 200 AFCTSDRVFTLSLHKFGESFFPGTGHPRDVGYGRGRYYSMNLAVWDGITDFYYLGLFEHALHSIVRRYSPDAIVLQCGAD 279 (429)
T ss_pred HHcCCCCeEEEEecCCCCCCCCCCCCccccCCCCCceeEEeeeCCCCcCHHHHHHHHHHHHHHHHHhcCCCEEEEECCcc
Confidence 59999999999999986 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCCCCcCC--CC--CCccccccCCC
Q psy8693 79 SLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANE--LP--YNDYFEYFGPD 154 (282)
Q Consensus 79 ~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~~~~~--~p--~~~~~~~~~pd 154 (282)
+|.+||||+|+||.++|.+|+++++++++|++++|||||++.+++|||++++++++|+++|++ +| ..+|.+.|.|+
T Consensus 280 a~~~DpLg~l~LT~~g~~~~~~~l~~~~~plv~vleGGY~~~~lar~w~~~t~~l~g~~i~~~~~lp~~~~~~~~~~~~~ 359 (429)
T PTZ00346 280 SLAGDRLGLLNLSSFGHGQCVQAVRDLGIPMLALGGGGYTIRNVAKLWAYETSILTGHPLPPNTVLPVAEMPLSGWLFQD 359 (429)
T ss_pred CCCCCCCCCceeCHHHHHHHHHHHHhcCCCEEEEeCCcCCccHHHHHHHHHHHHHcCCCCCCCCCCCCCCCchhhhhcCC
Confidence 999999999999999999999999999999999999999999999999999999999999876 67 35788889999
Q ss_pred cccccCCCCCCCCC-chhHHHhhhhhhhhccc
Q psy8693 155 FKLHISPSNMANQN-TPEYLEKIKTRLFENLR 185 (282)
Q Consensus 155 f~l~v~~~~~~~~N-t~e~le~i~~vl~esL~ 185 (282)
|++++.++++.+.| ....+++..+.+.++++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (429)
T PTZ00346 360 SPLLIVAQDRSNHVLPGLHCQRAYQMMTEQID 391 (429)
T ss_pred CccccccccccccCCCcchhHHHHHHHHHHHH
Confidence 99998877777766 35555655555555554
No 4
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=4.1e-37 Score=286.92 Aligned_cols=136 Identities=28% Similarity=0.423 Sum_probs=130.9
Q ss_pred CcccCCCeEEEEcCCC--CCCCCCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693 1 MYLLNTNANFIVNDRD--QTWDLLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD 78 (282)
Q Consensus 1 ~f~~dp~v~~~s~h~~--~~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D 78 (282)
+||+||+|+|+|+|++ ++|||||..+++|.++ +|+++|||||+|++|++|+.+|+.++.|++++|+||+||||||||
T Consensus 172 ify~~~~V~~~S~H~~~~~~yPgtg~~~e~g~g~-~g~~vNiPLp~g~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D 250 (340)
T COG0123 172 IFYDDDDVLTVSLHQDGRPFYPGTGGADEIGEGK-EGNNVNIPLPPGTGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFD 250 (340)
T ss_pred HHccCCCeEEEeccCCCCCCCCcCCCccccccCc-ccceEeeecCCCCCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcc
Confidence 5999999999999996 7999999999999999 999999999999999999999999999999999999999999999
Q ss_pred CCCCCcCCCCCCCHHHHHHHHHHHHhc----CCCEEEEeCCCCCcChhHHHHHHHHHHHcCCC
Q psy8693 79 SLTGDRLGCFNLTVRGHGKCVEFVKRY----NLPFLMVGGGGYTIRNVSRCWTYETSVALGSE 137 (282)
Q Consensus 79 ~~~~Dplg~~~lt~~~~~~~~~~~~~~----~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~ 137 (282)
+|.+|||++|+||.++|.+|+++++++ ++|+++|+||||+.++++++|+.++..+.|..
T Consensus 251 ~h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~vleGGY~~~~l~~~~~~~~~~l~~~~ 313 (340)
T COG0123 251 AHRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVAVLEGGYNLDALARSLVAFLAGLAGLV 313 (340)
T ss_pred cCCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEEEecCCCChHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999885 56999999999999999999999999999964
No 5
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=100.00 E-value=1.3e-37 Score=288.48 Aligned_cols=133 Identities=29% Similarity=0.503 Sum_probs=116.7
Q ss_pred CcccCCCeEEEEcCC--CCCCC-CCCCCCCCCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC
Q psy8693 1 MYLLNTNANFIVNDR--DQTWD-LLHDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA 77 (282)
Q Consensus 1 ~f~~dp~v~~~s~h~--~~~yP-gtG~~~~~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~ 77 (282)
+||+||+|+|+|+|+ ..||| |||..+|+|.++|+|+++|||||+|++|++|+.+|+++|.|++++|+||+|||||||
T Consensus 171 if~~d~~V~~~SiH~~~~~~yP~~tG~~~e~G~~~g~g~~~NipL~~g~~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~ 250 (311)
T PF00850_consen 171 IFYDDPRVLYISIHQYPGNFYPFGTGFPDEIGEGKGKGYNLNIPLPPGTGDDEYLEAFEEILLPALEEFRPDLIVVSAGF 250 (311)
T ss_dssp HTTT-SSEEEEEEEE-CTTSTTTSS--TT--ESGGGTTSEEEEEE-TTEBHHHHHHHHHHHHHHHHHHHT-SEEEEEE-S
T ss_pred heeCCCCEEecCccccccccCCCcCCCccccCCCcccceeEecccccccchHHHHHHHhhccccchhcccCcEEEEccCc
Confidence 599999999999999 68999 999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCHHHHHHHHHHHHhcCC----CEEEEeCCCCCcChhHHHHHHHHHHH
Q psy8693 78 DSLTGDRLGCFNLTVRGHGKCVEFVKRYNL----PFLMVGGGGYTIRNVSRCWTYETSVA 133 (282)
Q Consensus 78 D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~----~~~~v~eGGY~~~~~~~~~~~~~~~~ 133 (282)
|+|++||+|.|+||+++|.+++++|+++.. |+|+||||||+++++++||+.++++|
T Consensus 251 D~~~~Dplg~~~lt~~~~~~~~~~~~~~a~~~~~~~v~vleGGY~~~~~~~~~~~~~~~L 310 (311)
T PF00850_consen 251 DAHAGDPLGGLNLTPEGYRELTRRLKSLAKRHCIPVVSVLEGGYNPESLARSWAAVIAAL 310 (311)
T ss_dssp TTBTTSTT-SEBB-HHHHHHHHHHHHTTHSHHSGCEEEEE-S-SSHHHHHHHHHHHHHHH
T ss_pred ccchhccccCcCCCHHHHHHHHHHHHHHHHhcCCcEEEEECCCCChhHHHHHHHHHHHHh
Confidence 999999999999999999999999998633 99999999999999999999999886
No 6
>KOG1343|consensus
Probab=99.96 E-value=1.5e-29 Score=255.12 Aligned_cols=137 Identities=22% Similarity=0.317 Sum_probs=122.3
Q ss_pred Cccc--CCCeEEEEcCCC---CCCCCC--CCCCCCCCCCCcccEEeecCCC-CCChhHHHHHHHHHHHHHHHHcCCCEEE
Q psy8693 1 MYLL--NTNANFIVNDRD---QTWDLL--HDKQDIGAGKGKYYAVNIPLRD-GMDDESYESIFVPIISKVMETFQPSAVV 72 (282)
Q Consensus 1 ~f~~--dp~v~~~s~h~~---~~yPgt--G~~~~~G~g~g~g~~~NiPl~~-g~~d~~y~~~~~~~l~~~~~~f~Pd~iv 72 (282)
.||+ |++|+|+|+|+. .|||.. |..+.+|.|.|.|+++|+|+.. |++|.+|..+|..++.|...+|+||+|+
T Consensus 211 ~~~~~~d~~vl~~s~~r~e~~~f~P~~~~g~~~~~~~g~~~g~~~nl~~~~~g~~~~dy~~~~~~~~~~~~~efqp~Lv~ 290 (797)
T KOG1343|consen 211 SSPNNGDQRVLYFSLHRLETGPFLPNITLGLATLRGGGPGLGQTGNLPWNQVGMTDADYEAAFLHVLLPHASEFQPDLLL 290 (797)
T ss_pred ccCCCcccccccccchhcccCCcCCCCccchHHHhCcCCCcceeeccchhhcCCcchhhhhhhhccCccchhhcCcceEE
Confidence 3788 999999999986 699974 7788999999999999999975 8999999999999999999999999999
Q ss_pred EecCCCCCCCCc-CCCCCCCHHHHHHHHHHHHhcC-CCEEEEeCCCCCcChhHHHHHHHHHHHcCCCC
Q psy8693 73 LQCGADSLTGDR-LGCFNLTVRGHGKCVEFVKRYN-LPFLMVGGGGYTIRNVSRCWTYETSVALGSEI 138 (282)
Q Consensus 73 v~~G~D~~~~Dp-lg~~~lt~~~~~~~~~~~~~~~-~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~~ 138 (282)
+|||||++.+|+ ++.|..|+.+|..++++.+-.+ ++++++++|||+.+.+++. ......++|.+.
T Consensus 291 ~sag~dA~lg~~~~~~m~~tP~~~~~~~~~~~~~~r~~l~v~~e~gy~le~l~~~-~~~~~~llg~~~ 357 (797)
T KOG1343|consen 291 VSAGFDALLGDGPVGLMAQTPLGYAHRTSMHRPLGRGQLVVVLEGGYFLEKLAQS-QLVLNKLLGKPI 357 (797)
T ss_pred eeccccccccCcccCcccCCcccHHHHhccccccccCccceecchhHHHHHHHHh-hhhHHhhcCCCc
Confidence 999999999997 7999999999999999955455 8999999999999999887 555566666543
No 7
>KOG1343|consensus
Probab=99.93 E-value=4e-25 Score=223.15 Aligned_cols=140 Identities=21% Similarity=0.386 Sum_probs=133.4
Q ss_pred CcccCCCeEEEEcCCC---CCCCCCCCCCCCCCCCCcccEEeecCCCCCC-hhHHHHHHHHHHHHHHHHcCCCEEEEecC
Q psy8693 1 MYLLNTNANFIVNDRD---QTWDLLHDKQDIGAGKGKYYAVNIPLRDGMD-DESYESIFVPIISKVMETFQPSAVVLQCG 76 (282)
Q Consensus 1 ~f~~dp~v~~~s~h~~---~~yPgtG~~~~~G~g~g~g~~~NiPl~~g~~-d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G 76 (282)
+||.||.|+|+|+|++ +|||++|..+++|.+.|+|+++|||++.+.. |.+|+.+++.++.|++++|.||+|+||+|
T Consensus 618 ~f~~~~~vlyislhr~~~G~~fp~~g~~~e~g~~~g~g~~vNv~~~~~~~~D~ey~~a~~~vv~Pia~~F~pd~VlvSag 697 (797)
T KOG1343|consen 618 AFYSDPSVLYISLHRHDDGNFFPGSGAPDEVGKGEGVGFNVNVAWTGGLDPDAEYLAAFRTVVMPIAYEFNPDLVLVSAG 697 (797)
T ss_pred eeccCccccccccchhccCCcCCCCCCchhcccccccceeecccccCCCCCCHHHHHHHHHhhHHHHHHhCCCeEEEecc
Confidence 5999999999999987 6999999999999999999999999987644 59999999999999999999999999999
Q ss_pred CCCCCCCcCCCCCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCcChhHHHHHHHHHHHcCCCCcC
Q psy8693 77 ADSLTGDRLGCFNLTVRGHGKCVEFVKRY-NLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIAN 140 (282)
Q Consensus 77 ~D~~~~Dplg~~~lt~~~~~~~~~~~~~~-~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~~~~ 140 (282)
||+..+||||+.++|.++|+.+++.++.. ++|++.++||||+..+++++..+++.+++|.+.|.
T Consensus 698 fDaa~~dplg~~~vt~~~~~~lt~~l~~lagGRvv~~LEggy~lt~is~s~~~~~~~llg~~~p~ 762 (797)
T KOG1343|consen 698 FDAAEGDPLGGYKVTAECFGYLTQQLMGLAGGRVVLALEGGYDLTAISDSAEACVRALLGDSLPP 762 (797)
T ss_pred ccccccCccccccccHhHHHHHHHHHHHhcCCcEEEEecCCcchhhhhHHHHHHHHhccCCCCCC
Confidence 99999999999999999999999999986 79999999999999999999999999999988876
No 8
>PTZ00346 histone deacetylase; Provisional
Probab=99.90 E-value=1.8e-24 Score=205.59 Aligned_cols=111 Identities=32% Similarity=0.582 Sum_probs=101.9
Q ss_pred CCcccccCCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceeccccCCCccccCCCcccCCCCCcccEEeecCCCCCC
Q psy8693 153 PDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMD 232 (282)
Q Consensus 153 pdf~l~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p~~~~~~~~~~~~e~G~g~g~g~~~N~pl~~g~~ 232 (282)
-|||+|++++ |++++...+++++.|+||++. .|||+||. .+|+|.|+|+|+++||||++|++
T Consensus 187 ID~DVHHGnG------TqeiF~~dp~Vl~vSiHq~~~------~fyPgtG~------~~e~G~g~G~g~~vNVPL~~G~~ 248 (429)
T PTZ00346 187 VDIDMHHGDG------VDEAFCTSDRVFTLSLHKFGE------SFFPGTGH------PRDVGYGRGRYYSMNLAVWDGIT 248 (429)
T ss_pred EeCCCCCCch------HHHHHcCCCCeEEEEecCCCC------CCCCCCCC------ccccCCCCCceeEEeeeCCCCcC
Confidence 5889999977 889999999999999999762 25666665 58999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCcccccccccC
Q psy8693 233 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCS 281 (282)
Q Consensus 233 d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~~~lt~~~~~ 281 (282)
|++|+++|+++|.|++++|+||+||||||||+|.+||||+|+||.+||.
T Consensus 249 D~~Yl~~f~~ii~p~l~~F~PdlIvvsaG~Da~~~DpLg~l~LT~~g~~ 297 (429)
T PTZ00346 249 DFYYLGLFEHALHSIVRRYSPDAIVLQCGADSLAGDRLGLLNLSSFGHG 297 (429)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEECCccCCCCCCCCCceeCHHHHH
Confidence 9999999999999999999999999999999999999999999999874
No 9
>PTZ00063 histone deacetylase; Provisional
Probab=99.90 E-value=7.6e-24 Score=202.36 Aligned_cols=110 Identities=44% Similarity=0.771 Sum_probs=101.6
Q ss_pred CCcccccCCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceeccccCCCccccCCCcccCCCCCcccEEeecCCCCCC
Q psy8693 153 PDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMD 232 (282)
Q Consensus 153 pdf~l~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p~~~~~~~~~~~~e~G~g~g~g~~~N~pl~~g~~ 232 (282)
-|+|+|++++ |++.+...+++++.|+|+++. |||+||. .+++|.++|+|+++||||++|++
T Consensus 170 ID~DvHHGdG------tqe~F~~~~~VltvS~H~~~~-------ffPgtG~------~~e~G~g~G~g~~vNvPL~~G~~ 230 (436)
T PTZ00063 170 IDIDVHHGDG------VEEAFYVTHRVMTVSFHKFGD-------FFPGTGD------VTDIGVAQGKYYSVNVPLNDGID 230 (436)
T ss_pred EeCCCCCCcc------hHHHhccCCCeEEEEeccCCC-------cCCCCCC------ccccCCCCCCceEEEeeCCCCCC
Confidence 5889999977 789999999999999999751 6777776 58999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCcccccccccC
Q psy8693 233 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCS 281 (282)
Q Consensus 233 d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~~~lt~~~~~ 281 (282)
|++|+.+|+++|.|++++|+||+||||||+|+|.+||||.|+||.+|++
T Consensus 231 D~~Y~~~f~~ii~~~i~~f~Pd~IvvqaG~D~~~~DpLg~l~Lt~~g~~ 279 (436)
T PTZ00063 231 DDSFVDLFKPVISKCVEVYRPGAIVLQCGADSLTGDRLGRFNLTIKGHA 279 (436)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCEEEEECCccccCCCCCCCcccCHHHHH
Confidence 9999999999999999999999999999999999999999999999874
No 10
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.89 E-value=2.2e-23 Score=194.81 Aligned_cols=108 Identities=35% Similarity=0.535 Sum_probs=98.9
Q ss_pred CCcccccCCCCCCCCCchhHHHhhhhhhhhccccC--CCCCCcceeccccCCCccccCCCcccCCCCCcccEEeecCCCC
Q psy8693 153 PDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML--PHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDG 230 (282)
Q Consensus 153 pdf~l~v~~~~~~~~Nt~e~le~i~~vl~esL~~~--~~~Pgvq~~f~p~~~~~~~~~~~~e~G~g~g~g~~~N~pl~~g 230 (282)
-|||+|++++ ||++++..+++++.|+|+. +.+||+ |. .+|+|+++ +|+++|||||+|
T Consensus 159 iD~DvHHGnG------Tqeify~~~~V~~~S~H~~~~~~yPgt--------g~------~~e~g~g~-~g~~vNiPLp~g 217 (340)
T COG0123 159 IDFDVHHGNG------TQEIFYDDDDVLTVSLHQDGRPFYPGT--------GG------ADEIGEGK-EGNNVNIPLPPG 217 (340)
T ss_pred EEecCCCChh------hHHHHccCCCeEEEeccCCCCCCCCcC--------CC------ccccccCc-ccceEeeecCCC
Confidence 4889999977 8999999999999999996 455555 43 57999999 999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCcccccccccC
Q psy8693 231 MDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCS 281 (282)
Q Consensus 231 ~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~~~lt~~~~~ 281 (282)
++|++|+.+|+.+++|++++|+||+||||||||+|.+|||++|+||+++|.
T Consensus 218 ~~d~~y~~a~~~~v~~~~~~f~PdlvivsaG~D~h~~Dpl~~~~Lt~~~~~ 268 (340)
T COG0123 218 TGDDSYLEALEEIVLPLLEEFKPDLVIVSAGFDAHRGDPLGRLNLTEEGYA 268 (340)
T ss_pred CCcHHHHHHHHHHHHHHHHhcCCCEEEEecCcccCCCCccceeecCHHHHH
Confidence 999999999999999999999999999999999999999999999999874
No 11
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine. Histone deacetylases (HDA) catalyse the removal of the acetyl group. Histone deacetylases, acetoin utilization proteins and acetylpolyamine amidohydrolases are all members of this ancient protein superfamily []. HDAs function in multi-subunit complexes, reversing the acetylation of histones by histone acetyltransferases [, ], and are also believed to deacetylate general transcription factors such as TFIIF and sequence-specific transcription factors such as p53 []. Thus, HDAs contribute to the regulation of transcription, in particular transcriptional repression []. At N-terminal tails of histones, removal of the acetyl group from the epsilon-amino group of a lysine side chain will restore its positivecharge, which may stabilise the histone-DNA interaction and prevent activating transcription factors binding to promoter elements []. HDAs play important roles in the cell cycle and differentiation, and their deregulation can contribute to the development of cancer [, ]. This entry represents the structural domain found in histone deacetylases. It consists of a 3-layer(alpha-beta-alpha) sandwich.; PDB: 4A69_A 2VQV_A 2VQO_A 2VQJ_A 2VQQ_B 2VQM_A 2VQW_G 3MAX_C 3MEN_D 1T64_B ....
Probab=99.88 E-value=7.6e-24 Score=196.49 Aligned_cols=111 Identities=34% Similarity=0.545 Sum_probs=88.4
Q ss_pred CCcccccCCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceeccc-cCCCccccCCCcccCCCCCcccEEeecCCCCC
Q psy8693 153 PDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSP-IIGPILWYDPYQDIGAGKGKYYAVNIPLRDGM 231 (282)
Q Consensus 153 pdf~l~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p-~~~~~~~~~~~~e~G~g~g~g~~~N~pl~~g~ 231 (282)
-|+|+|++++ |++++...+++++.|+|+++ ..+|| ++|. .+|+|.++|+|+++||||++++
T Consensus 158 iD~DvHhGnG------tq~if~~d~~V~~~SiH~~~------~~~yP~~tG~------~~e~G~~~g~g~~~NipL~~g~ 219 (311)
T PF00850_consen 158 IDFDVHHGNG------TQEIFYDDPRVLYISIHQYP------GNFYPFGTGF------PDEIGEGKGKGYNLNIPLPPGT 219 (311)
T ss_dssp EE-SSS--HH------HHHHTTT-SSEEEEEEEE-C------TTSTTTSS--------TT--ESGGGTTSEEEEEE-TTE
T ss_pred EEeCCCCccc------chhheeCCCCEEecCccccc------cccCCCcCCC------ccccCCCcccceeEeccccccc
Confidence 5789999877 88999999999999999964 23455 5555 5899999999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCcccccccccC
Q psy8693 232 DDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCS 281 (282)
Q Consensus 232 ~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~~~lt~~~~~ 281 (282)
+|++|+.+|+++|.|++++|+||+||||||||+|.+||++.|+||++||.
T Consensus 220 ~d~~y~~~~~~~l~~~~~~f~P~~ivvsaG~D~~~~Dplg~~~lt~~~~~ 269 (311)
T PF00850_consen 220 GDDEYLEAFEEILLPALEEFRPDLIVVSAGFDAHAGDPLGGLNLTPEGYR 269 (311)
T ss_dssp BHHHHHHHHHHHHHHHHHHHT-SEEEEEE-STTBTTSTT-SEBB-HHHHH
T ss_pred chHHHHHHHhhccccchhcccCcEEEEccCcccchhccccCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999873
No 12
>KOG1342|consensus
Probab=99.75 E-value=3.8e-19 Score=164.05 Aligned_cols=211 Identities=39% Similarity=0.625 Sum_probs=148.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCC-CCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC--hhHH
Q psy8693 48 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCF-NLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR--NVSR 124 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~-~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~--~~~~ 124 (282)
.++|+.-+.++=..-.+.|.+++.=...|-|+=.-|-|=.+ +++..+=-...+.|..-..-|++--.||-++. .-|.
T Consensus 67 t~eYi~fL~~V~p~n~~~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eAS 146 (425)
T KOG1342|consen 67 TDEYINFLQSVTPENMETFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEAS 146 (425)
T ss_pred hHHHHHHHhhCCcccccccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccC
Confidence 35677777665555555666666667778777554433111 12221111223333333445778889999874 3344
Q ss_pred HHHHHHHHHcCC-CCcCCCCCCccccccCCCcccccCCCCCCCCCchhHHHhhhhhhhhccccCCCCCCcceeccccCCC
Q psy8693 125 CWTYETSVALGS-EIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPHAPGVQVQVSPIIGP 203 (282)
Q Consensus 125 ~~~~~~~~~~g~-~~~~~~p~~~~~~~~~pdf~l~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~~Pgvq~~f~p~~~~ 203 (282)
..+++.-+.|+. ++ +-.|. +.---|+++|++.+ .++.+..-.+++-.|+|.+- | .|||+||.
T Consensus 147 GFCYvNDIVL~ILeL---lK~h~--RVLYIDIDvHHGDG------VEeAFy~TDRVmTvSfHKyg--~----~fFPGTG~ 209 (425)
T KOG1342|consen 147 GFCYVNDIVLGILEL---LKYHK--RVLYIDIDVHHGDG------VEEAFYTTDRVMTVSFHKYG--P----GFFPGTGD 209 (425)
T ss_pred cceeehHHHHHHHHH---HHhCC--ceEEEEecccCCcc------HHHHHhccceeEEEEEEecc--C----CCCCCCCc
Confidence 445544444431 11 11121 11124778998866 56788888899999999863 1 25667776
Q ss_pred ccccCCCcccCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCcccccccccC
Q psy8693 204 ILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCS 281 (282)
Q Consensus 204 ~~~~~~~~e~G~g~g~g~~~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~~~lt~~~~~ 281 (282)
..++|.++|+.|.+||||..|++|+.|..+|+.+|-++++.|+|++||+|||.|.+.+|+||.+|||.+|.|
T Consensus 210 ------l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pIi~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~ 281 (425)
T KOG1342|consen 210 ------LSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPIISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHA 281 (425)
T ss_pred ------ceeccCCCCceEEEccchhccCCcHHHHHHHHHHHHHHHHHhCCceEEEEcCCccccCCccceeeecchhHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999875
No 13
>KOG1344|consensus
Probab=99.35 E-value=3.1e-12 Score=111.94 Aligned_cols=83 Identities=27% Similarity=0.532 Sum_probs=75.9
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHH----HHHHHhcCCCEEEEe
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKC----VEFVKRYNLPFLMVG 113 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~----~~~~~~~~~~~~~v~ 113 (282)
..|.|..|+.|++|++.+++.+...+++|+||+||+.||.|.+.+||||.+.+|++|.-+. .++.++.++|++++.
T Consensus 219 ~kVEl~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~~RDelVFr~~R~~~iPvvMlt 298 (324)
T KOG1344|consen 219 CKVELRNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGIIERDELVFRTFRALGIPVVMLT 298 (324)
T ss_pred heeeeecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccchhhHHHHHHHHHcCCcEEEEe
Confidence 4578889999999999999999999999999999999999999999999999999998764 556677899999999
Q ss_pred CCCCCcC
Q psy8693 114 GGGYTIR 120 (282)
Q Consensus 114 eGGY~~~ 120 (282)
.|||-..
T Consensus 299 SGGY~K~ 305 (324)
T KOG1344|consen 299 SGGYLKA 305 (324)
T ss_pred cCceehh
Confidence 9999643
No 14
>KOG1344|consensus
Probab=98.71 E-value=2.2e-08 Score=88.03 Aligned_cols=60 Identities=27% Similarity=0.526 Sum_probs=56.4
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCcccccccccC
Q psy8693 222 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDCS 281 (282)
Q Consensus 222 ~~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~~~lt~~~~~ 281 (282)
..-+.|..||.|++|++-+++.+...+++|+||+||+.||.|.+.+||||.+.+|++|..
T Consensus 218 r~kVEl~~gTeddeYLrkl~r~l~~sl~ef~Pd~VvYNAGTDiLeGDpLG~L~ISp~Gi~ 277 (324)
T KOG1344|consen 218 RCKVELRNGTEDDEYLRKLKRCLMQSLAEFRPDMVVYNAGTDILEGDPLGNLAISPEGII 277 (324)
T ss_pred hheeeeecCCCchHHHHHHHHHHHHHHHhhCCcEEEEeCCCccccCCCCCCeeecccccc
Confidence 456788899999999999999999999999999999999999999999999999999863
No 15
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=85.49 E-value=4.9 Score=33.76 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=41.3
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh-c--CCCEEEE
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR-Y--NLPFLMV 112 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~-~--~~~~~~v 112 (282)
+|......+ -..++..+++.+.+.+...+||+|+|..|..=.....-.....+.+.|....+.+.+ . +.+++++
T Consensus 41 ~N~gi~G~t-~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~vi~~ 117 (193)
T cd01835 41 YNLGVRGDG-SEDVAARWRAEWSRRGELNVPNRLVLSVGLNDTARGGRKRPQLSARAFLFGLNQLLEEAKRLVPVLVV 117 (193)
T ss_pred EeecCCCCC-HHHHHHHHHHHHHhhcccCCCCEEEEEecCcccccccCcccccCHHHHHHHHHHHHHHHhcCCcEEEE
Confidence 466554433 445556665555444445899999999998644332111224566777765444332 2 4455554
No 16
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=84.82 E-value=2.5 Score=34.95 Aligned_cols=68 Identities=21% Similarity=0.318 Sum_probs=38.4
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHhc--CCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKRY--NLPFLMV 112 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~~--~~~~~~v 112 (282)
.+|..+.-.+. .+.+..+ .+.+..++||+||++.|. |...+-+ ..-..+.|..+++.+++. +.+++++
T Consensus 25 v~N~Gi~G~~~-~~~~~~~----~~~~~~~~p~~vvi~~G~ND~~~~~~---~~~~~~~~~~lv~~i~~~~~~~~iil~ 95 (171)
T cd04502 25 VVNRGFGGSTL-ADCLHYF----DRLVLPYQPRRVVLYAGDNDLASGRT---PEEVLRDFRELVNRIRAKLPDTPIAII 95 (171)
T ss_pred eeecCcccchH-HHHHHHH----HhhhccCCCCEEEEEEecCcccCCCC---HHHHHHHHHHHHHHHHHHCCCCcEEEE
Confidence 46666654442 2333333 334557899999999998 5433222 122345556677777764 3455544
No 17
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=83.71 E-value=2.6 Score=35.41 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=38.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC-CCCCCcCCCCCCCHHHHHHHHHHHHh--cCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD-SLTGDRLGCFNLTVRGHGKCVEFVKR--YNLPFLMV 112 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D-~~~~Dplg~~~lt~~~~~~~~~~~~~--~~~~~~~v 112 (282)
..|+... |.+-.+++..+++ +..++||+|++..|.. .....+ ..-..+.+.++++.+++ -+.+++++
T Consensus 43 ~~n~g~~-G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ND~~~~~~---~~~~~~~l~~li~~i~~~~~~~~iiv~ 112 (191)
T cd01836 43 WRLFAKT-GATSADLLRQLAP-----LPETRFDVAVISIGVNDVTHLTS---IARWRKQLAELVDALRAKFPGARVVVT 112 (191)
T ss_pred EEEEecC-CcCHHHHHHHHHh-----cccCCCCEEEEEecccCcCCCCC---HHHHHHHHHHHHHHHHhhCCCCEEEEE
Confidence 3566553 3444555555544 4478999999999984 322111 11123455556777776 35566554
No 18
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=82.27 E-value=3.5 Score=37.78 Aligned_cols=63 Identities=11% Similarity=0.250 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~ 120 (282)
+|.+.|++.+ |-+++|+-..+||-.|-.++.+| ++ +.+..-...+.+.+.++++|.|||....
T Consensus 1 ~~~~~~~~~~-~yi~~~~~~~~VIKlGG~ai~~~-----~l--~~~~~~ia~l~~~g~~~ViVHGggp~i~ 63 (280)
T cd04237 1 QFVDWFREAA-PYINAHRGKTFVIAFGGEAVAHP-----NF--DNIVHDIALLHSLGIRLVLVHGARPQID 63 (280)
T ss_pred ChHHHHHHHh-HHHHHhCCCEEEEEEChHHhcCc-----hH--HHHHHHHHHHHHCCCcEEEEeCCCHHHH
Confidence 3677888876 78999999999999998888754 22 2233333344455789999999998754
No 19
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=81.29 E-value=7.5 Score=32.22 Aligned_cols=71 Identities=14% Similarity=0.195 Sum_probs=39.5
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHH----HHHHHHHhc--CCCEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHG----KCVEFVKRY--NLPFL 110 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~----~~~~~~~~~--~~~~~ 110 (282)
..|..+.-.++. .+.+.-...+.+.+...+||+|+++.|..=. .....+.+.|. .+++.+++. +.+++
T Consensus 27 v~N~g~~G~t~~-~~~~~~~~~~~~~l~~~~pd~Vii~~G~ND~-----~~~~~~~~~~~~~~~~li~~i~~~~~~~~iv 100 (189)
T cd01825 27 YDNLGVNGASAS-LLLKWDAEFLQAQLAALPPDLVILSYGTNEA-----FNKQLNASEYRQQLREFIKRLRQILPNASIL 100 (189)
T ss_pred EecCccCchhhh-hhhccCHHHHHHHHhhCCCCEEEEECCCccc-----ccCCCCHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 355555544433 3333223344456778999999999996432 22234454444 455556663 44555
Q ss_pred EEe
Q psy8693 111 MVG 113 (282)
Q Consensus 111 ~v~ 113 (282)
++.
T Consensus 101 ~~~ 103 (189)
T cd01825 101 LVG 103 (189)
T ss_pred EEc
Confidence 544
No 20
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.93 E-value=6.4 Score=33.59 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=29.7
Q ss_pred CCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q psy8693 82 GDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVG 113 (282)
Q Consensus 82 ~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~ 113 (282)
=|..|-|.|..+.|...++.++.++.|+++++
T Consensus 106 IDEIGpMElks~~f~~~ve~vl~~~kpliatl 137 (179)
T COG1618 106 IDEIGPMELKSKKFREAVEEVLKSGKPLIATL 137 (179)
T ss_pred EecccchhhccHHHHHHHHHHhcCCCcEEEEE
Confidence 48899999999999999999999999988876
No 21
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=78.58 E-value=7.7 Score=32.14 Aligned_cols=63 Identities=10% Similarity=0.167 Sum_probs=34.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHH----HHHHHHHhcCCCEEEEe
Q psy8693 45 GMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHG----KCVEFVKRYNLPFLMVG 113 (282)
Q Consensus 45 g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~----~~~~~~~~~~~~~~~v~ 113 (282)
|.+.......+.+.+..++ .++||+||+..|..=... -..+.+.|. .+++.++..+.+++++.
T Consensus 46 g~~G~~~~~~~~~~~~~~~-~~~~d~vii~~G~ND~~~-----~~~~~~~~~~~~~~~i~~i~~~~~~vil~~ 112 (185)
T cd01832 46 AVRGRRTAQILAEQLPAAL-ALRPDLVTLLAGGNDILR-----PGTDPDTYRADLEEAVRRLRAAGARVVVFT 112 (185)
T ss_pred cCCcchHHHHHHHHHHHHH-hcCCCEEEEecccccccc-----CCCCHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence 3444444444444444443 479999999999742211 134554444 45566665566666654
No 22
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=77.41 E-value=11 Score=30.92 Aligned_cols=66 Identities=18% Similarity=0.327 Sum_probs=38.5
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHH----HHHHHHHHhcCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGH----GKCVEFVKRYNLPFLMV 112 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~----~~~~~~~~~~~~~~~~v 112 (282)
.+|..+.-.+. ...+..++ ..+..++||+|+++.|.. |... ..+.+.| .++++.+++.+.+++++
T Consensus 39 v~n~g~~G~~~-~~~~~~l~----~~~~~~~pd~v~i~~G~N----D~~~--~~~~~~~~~~l~~li~~~~~~~~~vil~ 107 (177)
T cd01822 39 VINAGVSGDTT-AGGLARLP----ALLAQHKPDLVILELGGN----DGLR--GIPPDQTRANLRQMIETAQARGAPVLLV 107 (177)
T ss_pred EEecCcCCccc-HHHHHHHH----HHHHhcCCCEEEEeccCc----cccc--CCCHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 45666653333 23333333 445678999999999974 3222 2344444 45666666667776665
Q ss_pred e
Q psy8693 113 G 113 (282)
Q Consensus 113 ~ 113 (282)
.
T Consensus 108 ~ 108 (177)
T cd01822 108 G 108 (177)
T ss_pred e
Confidence 3
No 23
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=76.94 E-value=7.3 Score=30.15 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=31.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8693 59 ISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGY 117 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY 117 (282)
+...+++++||+|.+|+- +.-+.+...++.+.+++.+..+.++.||.+
T Consensus 43 l~~~~~~~~pd~V~iS~~-----------~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~ 90 (121)
T PF02310_consen 43 LVEALRAERPDVVGISVS-----------MTPNLPEAKRLARAIKERNPNIPIVVGGPH 90 (121)
T ss_dssp HHHHHHHTTCSEEEEEES-----------SSTHHHHHHHHHHHHHTTCTTSEEEEEESS
T ss_pred HHHHHhcCCCcEEEEEcc-----------CcCcHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 345677889999999875 333555667777777776544555555544
No 24
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=76.30 E-value=15 Score=31.24 Aligned_cols=59 Identities=19% Similarity=0.304 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhc---CCCEEEEeC
Q psy8693 48 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRY---NLPFLMVGG 114 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~---~~~~~~v~e 114 (282)
.++...+|++++. .+.+.+||+||+ +| |.. .....+.+.+..+.+.+++. +.|++++.|
T Consensus 23 ~~~~~~~~~~~~~-~~~~~~~d~i~~-~G-D~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G 84 (223)
T cd00840 23 REDQFEAFEEIVE-LAIEEKVDFVLI-AG-DLF-----DSNNPSPEALELLIEALRRLKEAGIPVFIIAG 84 (223)
T ss_pred hHHHHHHHHHHHH-HHHhcCCCEEEE-CC-ccc-----CCCCCCHHHHHHHHHHHHHHHHCCCCEEEecC
Confidence 4567788888774 566789998765 33 443 33334566666666666655 677766554
No 25
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=75.22 E-value=11 Score=30.83 Aligned_cols=46 Identities=15% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHH----HHHHHHHHHHh--cCCCEEEE
Q psy8693 60 SKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVR----GHGKCVEFVKR--YNLPFLMV 112 (282)
Q Consensus 60 ~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~----~~~~~~~~~~~--~~~~~~~v 112 (282)
...+ ..+||+||++.|.. |-... .+.+ .+..+++.+++ -+.+++++
T Consensus 42 ~~~~-~~~pd~vvl~~G~N----D~~~~--~~~~~~~~~l~~li~~~~~~~~~~~vi~~ 93 (169)
T cd01828 42 DEDV-ALQPKAIFIMIGIN----DLAQG--TSDEDIVANYRTILEKLRKHFPNIKIVVQ 93 (169)
T ss_pred HHHh-ccCCCEEEEEeecc----CCCCC--CCHHHHHHHHHHHHHHHHHHCCCCeEEEE
Confidence 3344 78999999999964 32222 3444 44455666666 35565554
No 26
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=74.81 E-value=12 Score=30.99 Aligned_cols=69 Identities=13% Similarity=0.235 Sum_probs=37.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCC-cCCCCCCCHHHHHHHHHHHHhcCCCEEEEe
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD-RLGCFNLTVRGHGKCVEFVKRYNLPFLMVG 113 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~D-plg~~~lt~~~~~~~~~~~~~~~~~~~~v~ 113 (282)
.+|..+. |.+-.+++..+++ .+...+||+|+++.|..=.... ++.. -.+.+..+++.+++.+.+++++.
T Consensus 34 v~n~g~~-G~~~~~~l~~l~~----~~~~~~~d~v~i~~G~ND~~~~~~~~~---~~~~~~~li~~~~~~~~~~il~~ 103 (183)
T cd04501 34 VINRGIN-GDTTSQMLVRFYE----DVIALKPAVVIIMGGTNDIIVNTSLEM---IKDNIRSMVELAEANGIKVILAS 103 (183)
T ss_pred EEecCcC-CccHHHHHHHHHH----HHHhcCCCEEEEEeccCccccCCCHHH---HHHHHHHHHHHHHHCCCcEEEEe
Confidence 4555444 2223344444433 3456799999999997533221 1111 13444456666666666666553
No 27
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=74.55 E-value=20 Score=27.62 Aligned_cols=66 Identities=12% Similarity=0.245 Sum_probs=36.7
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC--CEEEEeC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL--PFLMVGG 114 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~--~~~~v~e 114 (282)
++|+|+.. +...+.+++.. +...+.+.||+-|+.... -+.....++.+.+++.+. .-+.+++
T Consensus 42 Ai~ip~~~------~~~~~~~~~~~-~~~~~~~~iv~~C~~~g~---------rs~~a~~~l~~~l~~~G~~~~~v~~l~ 105 (113)
T cd01443 42 SINLPAQS------CYQTLPQVYAL-FSLAGVKLAIFYCGSSQG---------RGPRAARWFADYLRKVGESLPKSYILT 105 (113)
T ss_pred ceecchhH------HHHHHHHHHHH-hhhcCCCEEEEECCCCCc---------ccHHHHHHHHHHHhccCCCCCeEEEEC
Confidence 68999863 11222233322 233566778888863221 144555555555655552 4577889
Q ss_pred CCCC
Q psy8693 115 GGYT 118 (282)
Q Consensus 115 GGY~ 118 (282)
||++
T Consensus 106 GG~~ 109 (113)
T cd01443 106 GGIK 109 (113)
T ss_pred Chhh
Confidence 9996
No 28
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=72.28 E-value=16 Score=28.81 Aligned_cols=50 Identities=16% Similarity=0.200 Sum_probs=31.4
Q ss_pred HHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8693 56 VPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGY 117 (282)
Q Consensus 56 ~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY 117 (282)
+..+..+.+..+||+|.+|+ +..+.....++.+.+|+....+.++.||.+
T Consensus 28 ~~~~~~~~~~~~pdiv~~S~------------~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~ 77 (127)
T cd02068 28 DDIVEDIKELLKPDVVGISL------------MTSAIYEALELAKIAKEVLPNVIVVVGGPH 77 (127)
T ss_pred HHHHHHHHHhcCCCEEEEee------------ccccHHHHHHHHHHHHHHCCCCEEEECCcc
Confidence 34444444449999999984 122344567788888887544555555544
No 29
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=71.93 E-value=10 Score=34.75 Aligned_cols=59 Identities=19% Similarity=0.367 Sum_probs=36.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCC----HHHHHHHHHHHHhc--CCCEEEEeCCC
Q psy8693 57 PIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLT----VRGHGKCVEFVKRY--NLPFLMVGGGG 116 (282)
Q Consensus 57 ~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt----~~~~~~~~~~~~~~--~~~~~~v~eGG 116 (282)
+.|.+++++++||++|+ .|-|++..+.-....|. .+-|-++++.+++. +.--+++..|-
T Consensus 143 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGA 207 (283)
T TIGR02855 143 EKVLDLIEEVRPDILVI-TGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGA 207 (283)
T ss_pred HHHHHHHHHhCCCEEEE-eCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcch
Confidence 34668899999998876 89999976543333332 34445566666665 22335555553
No 30
>PRK05279 N-acetylglutamate synthase; Validated
Probab=71.82 E-value=13 Score=36.26 Aligned_cols=65 Identities=11% Similarity=0.244 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCh
Q psy8693 49 ESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRN 121 (282)
Q Consensus 49 ~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~ 121 (282)
..|.+.|++.+ |-+++|+=..+||-.|-.++.++ ++ +.+..-...+.+.+.++|+|.|||.....
T Consensus 7 ~~~~~~~~~~~-~~i~~~~~~~~VIk~GG~~l~~~-----~~--~~~~~~i~~l~~~g~~~VlVHGgg~~i~~ 71 (441)
T PRK05279 7 TEFVDWFRHSA-PYINAHRGKTFVIMLGGEAIAHG-----NF--SNIVHDIALLHSLGIRLVLVHGARPQIEE 71 (441)
T ss_pred hHHHHHHHHHh-HHHHHhCCCEEEEEECchhccCh-----hH--HHHHHHHHHHHHCCCeEEEECCCCHHHHH
Confidence 35788888876 77889998999999998888543 12 23333344445567899999999987543
No 31
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=70.59 E-value=16 Score=30.02 Aligned_cols=69 Identities=14% Similarity=0.168 Sum_probs=38.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhc--CCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRY--NLPFLMV 112 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~--~~~~~~v 112 (282)
.+|..+...+. ..++..+ .+.+...+||+|++..|..=..... ...-..+.|.++.+.+++. +.+++++
T Consensus 26 v~n~g~~G~t~-~~~~~~~----~~~~~~~~pd~v~i~~G~ND~~~~~--~~~~~~~~~~~l~~~~~~~~p~~~vi~~ 96 (174)
T cd01841 26 VNNLGIAGISS-RQYLEHI----EPQLIQKNPSKVFLFLGTNDIGKEV--SSNQFIKWYRDIIEQIREEFPNTKIYLL 96 (174)
T ss_pred EEecccccccH-HHHHHHH----HHHHHhcCCCEEEEEeccccCCCCC--CHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 56777665443 3343333 3445578999999999985432211 1112244455666666653 3444443
No 32
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=69.12 E-value=12 Score=31.03 Aligned_cols=49 Identities=14% Similarity=0.427 Sum_probs=30.8
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhc--CCCEEEE
Q psy8693 59 ISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRY--NLPFLMV 112 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~--~~~~~~v 112 (282)
+...+...+||+||+..|..=...+. -..+.+..+++.+++. +.|++++
T Consensus 49 ~~~~~~~~~pd~vii~~G~ND~~~~~-----~~~~~~~~~i~~i~~~~p~~~iil~ 99 (177)
T cd01844 49 VAELLRDVPADLYIIDCGPNIVGAEA-----MVRERLGPLVKGLRETHPDTPILLV 99 (177)
T ss_pred HHHHHHhcCCCEEEEEeccCCCccHH-----HHHHHHHHHHHHHHHHCcCCCEEEE
Confidence 33555678999999999976332211 2245666677777765 3466554
No 33
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=67.99 E-value=9.7 Score=36.95 Aligned_cols=61 Identities=13% Similarity=0.252 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 51 YESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 51 y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
|...|.+.+ |-+++|+=..+||=.|-.++.++- + ..+..-...+.+.+.++|+|.|||...
T Consensus 1 ~~~~~~~~~-~~i~~~~~~~~ViK~GG~~~~~~~-----~--~~~~~~i~~l~~~g~~~vlVHGgg~~i 61 (429)
T TIGR01890 1 FVAWFREAA-PYINAHRGKTFVVGLGGELVEGGN-----L--GNIVADIALLHSLGVRLVLVHGARPQI 61 (429)
T ss_pred ChhHHhhhh-HHHHHhCCCEEEEEEChhhccCcc-----H--HHHHHHHHHHHHCCCcEEEEcCCCHHH
Confidence 345677765 789999999999999977775431 1 134444445666788999999999754
No 34
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=67.56 E-value=6.5 Score=33.92 Aligned_cols=66 Identities=20% Similarity=0.251 Sum_probs=35.9
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHH----HHHHHHHHHHhc--CCCEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVR----GHGKCVEFVKRY--NLPFL 110 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~----~~~~~~~~~~~~--~~~~~ 110 (282)
.+|..+.-.+. ...+..++ ...+..++||+|||.+|..=.... .+.+ .+..+++.+++. +.+++
T Consensus 63 v~N~Gi~G~tt-~~~l~r~~---~~~l~~~~pd~VvI~~G~ND~~~~------~~~~~~~~~l~~ii~~l~~~~P~~~Ii 132 (214)
T cd01820 63 ALNFGIGGDRT-QNVLWRLE---NGELDGVNPKVVVLLIGTNNIGHT------TTAEEIAEGILAIVEEIREKLPNAKIL 132 (214)
T ss_pred eEeeeeccccH-hHHHHHHh---cCCccCCCCCEEEEEecccccCCC------CCHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 57776644332 22322222 123456899999999997643211 1444 455566666664 34454
Q ss_pred EE
Q psy8693 111 MV 112 (282)
Q Consensus 111 ~v 112 (282)
++
T Consensus 133 l~ 134 (214)
T cd01820 133 LL 134 (214)
T ss_pred EE
Confidence 44
No 35
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=67.23 E-value=13 Score=31.74 Aligned_cols=72 Identities=11% Similarity=0.076 Sum_probs=37.4
Q ss_pred EEeecCCCCCCh-----hHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCC--CCCCCHH----HHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDD-----ESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLG--CFNLTVR----GHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d-----~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg--~~~lt~~----~~~~~~~~~~~~ 105 (282)
.+|..+.-.+.- +..+.-+.+ .+++.-+||+|++..|..=....... .-.++.+ .+..+.+.+++.
T Consensus 42 v~N~Gi~G~t~~~~~~~~~~l~r~~~---~v~~~~~p~~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~l~~ii~~~~~~ 118 (204)
T cd01830 42 VLNAGIGGNRLLADGLGPSALARFDR---DVLSQPGVRTVIILEGVNDIGASGTDFAAAPVTAEELIAGYRQLIRRAHAR 118 (204)
T ss_pred EEECCccCcccccCCCChHHHHHHHH---HHhcCCCCCEEEEecccccccccccccccCCCCHHHHHHHHHHHHHHHHHC
Confidence 456666544321 233334432 23344479999999998643221110 1123444 455566667766
Q ss_pred CCCEEE
Q psy8693 106 NLPFLM 111 (282)
Q Consensus 106 ~~~~~~ 111 (282)
+.++++
T Consensus 119 ~~~vil 124 (204)
T cd01830 119 GIKVIG 124 (204)
T ss_pred CCeEEE
Confidence 666654
No 36
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=66.61 E-value=16 Score=33.67 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCC----HHHHHHHHHHHHhc--CCCEEEEeCCC
Q psy8693 57 PIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLT----VRGHGKCVEFVKRY--NLPFLMVGGGG 116 (282)
Q Consensus 57 ~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt----~~~~~~~~~~~~~~--~~~~~~v~eGG 116 (282)
+.|..++++++||++|+ .|-|++..+.-.-.+|. .+-|-+.++.+++. +.--+++..|-
T Consensus 144 ~~i~~Ll~~~~PDIlVi-TGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGA 208 (287)
T PF05582_consen 144 EKIYRLLEEYRPDILVI-TGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGA 208 (287)
T ss_pred HHHHHHHHHcCCCEEEE-eCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcch
Confidence 45668899999998876 89999877753222221 23344456666665 22334555543
No 37
>cd07388 MPP_Tt1561 Thermus thermophilus Tt1561 and related proteins, metallophosphatase domain. This family includes bacterial proteins related to Tt1561 (also known as Aq1956 in Aquifex aeolicus), an uncharacterized Thermus thermophilus protein. The conserved domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets,
Probab=65.29 E-value=33 Score=30.44 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
.+++.++ ..+++-+||+||++ +| +.......+.+..+.+.+.+++.|+++|. |-.+
T Consensus 18 ~~le~l~-~~~~~~~~D~vv~~-------GD-l~~~g~~~~~~~~~l~~l~~l~~pv~~V~-GNhD 73 (224)
T cd07388 18 EALEKLV-GLAPETGADAIVLI-------GN-LLPKAAKSEDYAAFFRILGEAHLPTFYVP-GPQD 73 (224)
T ss_pred HHHHHHH-HHHhhcCCCEEEEC-------CC-CCCCCCCHHHHHHHHHHHHhcCCceEEEc-CCCC
Confidence 3555544 34566789988753 45 33344467888888898888888887665 4444
No 38
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=65.26 E-value=13 Score=30.85 Aligned_cols=52 Identities=17% Similarity=0.185 Sum_probs=29.0
Q ss_pred HHHHHHc---CCCEEEEecCCCCCCCCcCCCCCCCHHHHH----HHHHHHHh--cCCCEEEE
Q psy8693 60 SKVMETF---QPSAVVLQCGADSLTGDRLGCFNLTVRGHG----KCVEFVKR--YNLPFLMV 112 (282)
Q Consensus 60 ~~~~~~f---~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~----~~~~~~~~--~~~~~~~v 112 (282)
...+... +||+||++.|..=....... -+.+.+.|. .+++.+++ -+.+++++
T Consensus 53 ~~~~~~~~~~~pd~vii~~G~ND~~~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~ii~~ 113 (199)
T cd01838 53 PKIFLEEKLAQPDLVTIFFGANDAALPGQP-QHVPLDEYKENLRKIVSHLKSLSPKTKVILI 113 (199)
T ss_pred HHhcCccccCCceEEEEEecCccccCCCCC-CcccHHHHHHHHHHHHHHHHhhCCCCeEEEe
Confidence 3444455 89999999997544322110 124555554 45555565 35555555
No 39
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=65.05 E-value=3.3 Score=33.26 Aligned_cols=77 Identities=10% Similarity=0.178 Sum_probs=38.5
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHH----HHHHHHhcCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGK----CVEFVKRYNLPFLMV 112 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~----~~~~~~~~~~~~~~v 112 (282)
..|.-.+. .+-..++..+.+.+.+ +...+||+||++.|..=.... .....+.+.|.. +.+.++... +++++
T Consensus 33 ~~n~~~~G-~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ND~~~~--~~~~~~~~~~~~~l~~~i~~~~~~~-~vi~~ 107 (179)
T PF13472_consen 33 VYNLGVSG-ATSSDFLARLQRDVLR-FKDPKPDLVVISFGTNDVLNG--DENDTSPEQYEQNLRRIIEQLRPHG-PVILV 107 (179)
T ss_dssp EEEEE-TT--BHHHHHHHHHHHCHH-HCGTTCSEEEEE--HHHHCTC--TTCHHHHHHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEeecC-ccHhHHHHHHHHHHhh-hccCCCCEEEEEccccccccc--ccccccHHHHHHHHHHHHHhhcccC-cEEEe
Confidence 34555543 3344455556655544 589999999999995322221 112233444443 333343334 77777
Q ss_pred eCCCCC
Q psy8693 113 GGGGYT 118 (282)
Q Consensus 113 ~eGGY~ 118 (282)
.-=.+.
T Consensus 108 ~~~~~~ 113 (179)
T PF13472_consen 108 SPPPRG 113 (179)
T ss_dssp E-SCSS
T ss_pred cCCCcc
Confidence 654443
No 40
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=64.85 E-value=48 Score=27.68 Aligned_cols=54 Identities=19% Similarity=0.282 Sum_probs=29.7
Q ss_pred HHHHHHcCCCEEEEecCCCCCCCCcCCC--CC-CC---HHHH----HHHHHHHHhcCCCEEEEe
Q psy8693 60 SKVMETFQPSAVVLQCGADSLTGDRLGC--FN-LT---VRGH----GKCVEFVKRYNLPFLMVG 113 (282)
Q Consensus 60 ~~~~~~f~Pd~ivv~~G~D~~~~Dplg~--~~-lt---~~~~----~~~~~~~~~~~~~~~~v~ 113 (282)
...+.+.+||+|+++.|..=+.....+. .. .+ .+.| ..+.+.+++.+.+++++.
T Consensus 52 ~~~l~~~~pd~vii~~G~ND~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv~~~~~~~~~vili~ 115 (200)
T cd01829 52 KELIAEEKPDVVVVFLGANDRQDIRDGDGYLKFGSPEWEEEYRQRIDELLNVARAKGVPVIWVG 115 (200)
T ss_pred HHHHhcCCCCEEEEEecCCCCccccCCCceeecCChhHHHHHHHHHHHHHHHHHhCCCcEEEEc
Confidence 3445688999999999985433211110 00 01 2344 344555555567776654
No 41
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=63.54 E-value=21 Score=28.71 Aligned_cols=39 Identities=13% Similarity=0.136 Sum_probs=25.0
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCH----HHHHHHHHHHHhc
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTV----RGHGKCVEFVKRY 105 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~----~~~~~~~~~~~~~ 105 (282)
..+...+||+|+++.|.. |.... .+. +.|..+++.+++.
T Consensus 34 ~~~~~~~pd~vvi~~G~N----D~~~~--~~~~~~~~~~~~~i~~i~~~ 76 (157)
T cd01833 34 DWVLAAKPDVVLLHLGTN----DLVLN--RDPDTAPDRLRALIDQMRAA 76 (157)
T ss_pred hccccCCCCEEEEeccCc----ccccC--CCHHHHHHHHHHHHHHHHHh
Confidence 445578999999999975 33222 343 4445566666665
No 42
>PRK14476 nitrogenase molybdenum-cofactor biosynthesis protein NifN; Provisional
Probab=62.59 E-value=42 Score=33.00 Aligned_cols=69 Identities=12% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHhc-----CCCEEEEeCCCCCcChhHHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKRY-----NLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~~-----~~~~~~v~eGGY~~~~~~~~~ 126 (282)
..+.+.|..+.++|+|++|+|.+.+ -...+|- ...+.+.+++. +.|++.+--.||.- +....|
T Consensus 78 ~~L~~aI~~~~~~~~P~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~p~~~~~pvi~v~tpgF~g-~~~~G~ 146 (455)
T PRK14476 78 ENVEEAILNICKKAKPKIIGLCTTGLTETRGDD----------VAGALKEIRARHPELADTPIVYVSTPDFKG-ALEDGW 146 (455)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCcchHhhhhcc----------HHHHHHHHHhhccccCCCeEEEecCCCCCC-cHHHHH
Confidence 4555666777888999999776665 6666664 33344444432 67999999999965 445555
Q ss_pred HHHHHH
Q psy8693 127 TYETSV 132 (282)
Q Consensus 127 ~~~~~~ 132 (282)
......
T Consensus 147 ~~a~~a 152 (455)
T PRK14476 147 AAAVEA 152 (455)
T ss_pred HHHHHH
Confidence 444333
No 43
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=62.20 E-value=26 Score=32.07 Aligned_cols=63 Identities=19% Similarity=0.310 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
+....|++.+ |-+++|+=..+||=.|-+++..+. +. +.+.+=...+.+.+.++++|.|||...
T Consensus 6 ~~~~~~~~~~-pyi~~~~~~~~VIk~gG~~~~~~~-----l~-~~~~~di~~l~~~g~~~VlVHGgg~~i 68 (284)
T CHL00202 6 ERVQVLSEAL-PYIQKFRGRIMVIKYGGAAMKNLI-----LK-ADIIKDILFLSCIGLKIVVVHGGGPEI 68 (284)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcc-----hH-HHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 4466787775 889999999999999977765432 22 233333445566788999999999854
No 44
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=62.00 E-value=42 Score=28.37 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=37.5
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCH----HHHHHHHHHHHhcCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTV----RGHGKCVEFVKRYNLPFLMV 112 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~----~~~~~~~~~~~~~~~~~~~v 112 (282)
.+|..+.-.+.. ..+..+ ...+...+||+||++.|.. |... ..+. +.+..+.+.+++.+.+++++
T Consensus 46 v~N~Gi~G~tt~-~~~~rl----~~~l~~~~pd~Vii~~GtN----D~~~--~~~~~~~~~~l~~li~~~~~~~~~~ill 114 (191)
T PRK10528 46 VVNASISGDTSQ-QGLARL----PALLKQHQPRWVLVELGGN----DGLR--GFPPQQTEQTLRQIIQDVKAANAQPLLM 114 (191)
T ss_pred EEecCcCcccHH-HHHHHH----HHHHHhcCCCEEEEEeccC----cCcc--CCCHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 566665544432 223333 3445578999999999974 3322 3455 44455666666655554444
No 45
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=61.41 E-value=40 Score=32.01 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=46.9
Q ss_pred ChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhc---CCCEEEEeCCCCC
Q psy8693 47 DDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRY---NLPFLMVGGGGYT 118 (282)
Q Consensus 47 ~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~---~~~~~~v~eGGY~ 118 (282)
.-+++..+|..++ .++.+-++|+||++ ||=+=.-+.+.+.-....+.++++ ++|+++ ..|-.+
T Consensus 21 r~~d~~~~f~~~l-~~a~~~~vD~vliA-------GDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~-I~GNHD 86 (390)
T COG0420 21 RLEDQKKAFDELL-EIAKEEKVDFVLIA-------GDLFDTNNPSPRALKLFLEALRRLKDAGIPVVV-IAGNHD 86 (390)
T ss_pred chHHHHHHHHHHH-HHHHHccCCEEEEc-------cccccCCCCCHHHHHHHHHHHHHhccCCCcEEE-ecCCCC
Confidence 3566788898887 56778899999864 677777788998888887777765 588766 455543
No 46
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=61.38 E-value=42 Score=32.55 Aligned_cols=49 Identities=8% Similarity=0.132 Sum_probs=36.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh
Q psy8693 48 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR 104 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~ 104 (282)
.++...+|++++ .++.+.+||+|+++ ||=+-.-.-|.+...++.+.+++
T Consensus 24 ~~D~~~~f~eil-~~a~~~~vD~VLia-------GDLFd~~~Ps~~~~~~~~~~lr~ 72 (405)
T TIGR00583 24 GDDSWNTFEEVL-QIAKEQDVDMILLG-------GDLFHENKPSRKSLYQVLRSLRL 72 (405)
T ss_pred hhhHHHHHHHHH-HHHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHH
Confidence 355677898887 46678899999864 56555556678888888887775
No 47
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=60.29 E-value=44 Score=32.39 Aligned_cols=64 Identities=14% Similarity=0.316 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcChhHHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
.-+.+.|..+.++++|++|+|.+.+ ..+.+| +...+.+.++ +.+.|++.+--.||.-.+....+
T Consensus 75 ~kL~~aI~~~~~~~~P~~I~V~ttC~~~iIGd----------Di~~v~~~~~~~~~~pvi~v~t~gf~g~~~~~G~ 140 (426)
T cd01972 75 KKLEDTIKEAYSRYKPKAIFVATSCATGIIGD----------DVESVVEELEDEIGIPVVALHCEGFKGKHWRSGF 140 (426)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCChHHHhcc----------CHHHHHHHHHHhhCCCEEEEeCCccCCccHhHHH
Confidence 5667777788889999988887664 333333 3344555554 35889999999999874444433
No 48
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=59.33 E-value=2.6 Score=38.47 Aligned_cols=55 Identities=16% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCEEEEecCC---CCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q psy8693 58 IISKVMETFQPSAVVLQCGA---DSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMV 112 (282)
Q Consensus 58 ~l~~~~~~f~Pd~ivv~~G~---D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v 112 (282)
.+..++++++||+||..+|+ |....+|...+.+...+-..+.+.+++.+.|++.+
T Consensus 42 ~~~~~~~~~~pd~Vin~aa~~~~~~ce~~p~~a~~iN~~~~~~la~~~~~~~~~li~~ 99 (286)
T PF04321_consen 42 AVAKLLEAFKPDVVINCAAYTNVDACEKNPEEAYAINVDATKNLAEACKERGARLIHI 99 (286)
T ss_dssp HHHHHHHHH--SEEEE------HHHHHHSHHHHHHHHTHHHHHHHHHHHHCT-EEEEE
T ss_pred HHHHHHHHhCCCeEeccceeecHHhhhhChhhhHHHhhHHHHHHHHHHHHcCCcEEEe
Confidence 34456678999999999986 34445666666666666777888888888887654
No 49
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=59.06 E-value=13 Score=31.24 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=28.3
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCC
Q psy8693 223 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADS 264 (282)
Q Consensus 223 ~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~ 264 (282)
+|..... .+...++..+++.+.+.+...+||+|+|..|..=
T Consensus 41 ~N~gi~G-~t~~~~~~r~~~~~~~~~~~~~pd~V~i~~G~ND 81 (193)
T cd01835 41 YNLGVRG-DGSEDVAARWRAEWSRRGELNVPNRLVLSVGLND 81 (193)
T ss_pred EeecCCC-CCHHHHHHHHHHHHHhhcccCCCCEEEEEecCcc
Confidence 5655443 3355677777776665555589999999999753
No 50
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=58.98 E-value=45 Score=30.01 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHH-cCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 52 ESIFVPIISKVMET-FQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 52 ~~~~~~~l~~~~~~-f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
.+.|+++|..+.+. -+||+||++ | |... .-+.+.|..+.+.+.+++.|+.++. |.-+.
T Consensus 39 ~~~l~~~i~~i~~~~~~~D~vvit-G-Dl~~-------~~~~~~~~~~~~~l~~l~~Pv~~v~-GNHD~ 97 (275)
T PRK11148 39 WESYQAVLEAIRAQQHEFDLIVAT-G-DLAQ-------DHSSEAYQHFAEGIAPLRKPCVWLP-GNHDF 97 (275)
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEC-C-CCCC-------CCCHHHHHHHHHHHhhcCCcEEEeC-CCCCC
Confidence 45566666655443 479997753 2 3322 2257889998888888889976554 55443
No 51
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=58.50 E-value=44 Score=24.91 Aligned_cols=56 Identities=21% Similarity=0.348 Sum_probs=35.5
Q ss_pred ecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Q psy8693 40 IPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGG 114 (282)
Q Consensus 40 iPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~e 114 (282)
|-+|+|++|+. +.+++. + | ...+|+|..- -.++...-.+..+++++.+.|++-+.|
T Consensus 6 iD~PPGTgD~~-l~~~~~-~-~-----~~g~ivVTTP-----------q~la~~dv~r~~~~~~~~~vpilGvVE 61 (81)
T PF10609_consen 6 IDLPPGTGDEH-LTLMQY-L-P-----IDGAIVVTTP-----------QELALADVRRAIDMFRKLNVPILGVVE 61 (81)
T ss_dssp EE--SCSSSHH-HHHHHH-H--------SEEEEEE-C-----------CC--HHHHHHHHHHHHCTT-EEEEEEE
T ss_pred EeCCCCCCcHH-HHHHHh-C-C-----CCeEEEEeCC-----------HHHHHHHHHHHHHHHHhcCCCcEEEEE
Confidence 56899999975 334332 2 1 2247888776 247888889999999999999997765
No 52
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=57.07 E-value=28 Score=27.32 Aligned_cols=42 Identities=17% Similarity=0.188 Sum_probs=28.4
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCC
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADS 79 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~ 79 (282)
+.+.+|++.-...-...+.+.|..++++++||+|+.-...|.
T Consensus 71 ~~l~~~D~~~~~~~~~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 71 IFLDFPDGQLPGWSWEELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp EEEEECTTSCTCHHHHHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred EEeecCCCCcccccHHHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 444567766555344455566778899999999999888776
No 53
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=55.55 E-value=47 Score=25.71 Aligned_cols=35 Identities=11% Similarity=-0.008 Sum_probs=24.2
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYN 106 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~ 106 (282)
..+.+.+||+|.+|+-.+ -+.....++.+.+++.+
T Consensus 44 ~~~~~~~pdvV~iS~~~~-----------~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 44 EAAKEEDADAIGLSGLLT-----------THMTLMKEVIEELKEAG 78 (119)
T ss_pred HHHHHcCCCEEEEecccc-----------ccHHHHHHHHHHHHHcC
Confidence 456689999999987521 13455567778888774
No 54
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=55.54 E-value=41 Score=28.27 Aligned_cols=45 Identities=9% Similarity=0.076 Sum_probs=25.6
Q ss_pred CCCEEEEecCCCCCCCCcCCCCCCCHHHHH----HHHHHHHhcCCCEEEE
Q psy8693 67 QPSAVVLQCGADSLTGDRLGCFNLTVRGHG----KCVEFVKRYNLPFLMV 112 (282)
Q Consensus 67 ~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~----~~~~~~~~~~~~~~~v 112 (282)
+||+||++.|..=...... ....+.+.|. ++.+.+++.+.+++++
T Consensus 65 ~pdlVii~~G~ND~~~~~~-~~~~~~~~~~~nl~~ii~~~~~~~~~~il~ 113 (198)
T cd01821 65 PGDYVLIQFGHNDQKPKDP-EYTEPYTTYKEYLRRYIAEARAKGATPILV 113 (198)
T ss_pred CCCEEEEECCCCCCCCCCC-CCCCcHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence 7999999999744322110 0123455554 4555666666655544
No 55
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=55.20 E-value=36 Score=26.63 Aligned_cols=79 Identities=6% Similarity=0.083 Sum_probs=42.3
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh--cCCCEEEEeC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR--YNLPFLMVGG 114 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~--~~~~~~~v~e 114 (282)
.+|...+...... +...+. ........+||+||++.|..=....+........+.+.++.+.+++ .+.+++++.-
T Consensus 38 ~~n~~~~g~~~~~-~~~~~~--~~~~~~~~~~d~vil~~G~ND~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~ 114 (187)
T cd00229 38 VINLGVSGATTAD-ALRRLG--LRLALLKDKPDLVIIELGTNDLGRGGDTSIDEFKANLEELLDALRERAPGAKVILITP 114 (187)
T ss_pred EEeecccchhHHH-HHhhcc--hhhhhccCCCCEEEEEecccccccccccCHHHHHHHHHHHHHHHHHHCCCCcEEEEeC
Confidence 4555555444332 222221 2345679999999999996533322101122334555566666664 3556666655
Q ss_pred CCCC
Q psy8693 115 GGYT 118 (282)
Q Consensus 115 GGY~ 118 (282)
--+.
T Consensus 115 ~~~~ 118 (187)
T cd00229 115 PPPP 118 (187)
T ss_pred CCCC
Confidence 4443
No 56
>KOG1321|consensus
Probab=54.88 E-value=68 Score=30.30 Aligned_cols=121 Identities=23% Similarity=0.239 Sum_probs=68.9
Q ss_pred EeCCCCCcChhHHHHHHHHHHHcCCCCcCCCCCCccc--cccCCCcccccCCCCCCCCCchhHHHhhhhhhhhccccCCC
Q psy8693 112 VGGGGYTIRNVSRCWTYETSVALGSEIANELPYNDYF--EYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRMLPH 189 (282)
Q Consensus 112 v~eGGY~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~--~~~~pdf~l~v~~~~~~~~Nt~e~le~i~~vl~esL~~~~~ 189 (282)
-.|||--+....+.....+..+|....|+..|-..|. +...| =|++.++++++--.+.+--.+.
T Consensus 97 ~IGGGSPir~wT~~Q~~~m~k~Ld~~~petaphk~YVgfRY~~P--------------lTEea~~qikkd~v~r~Vafsq 162 (395)
T KOG1321|consen 97 EIGGGSPIRKWTEYQAEEMCKILDKKCPETAPHKPYVGFRYAHP--------------LTEEALEQIKKDGVTRAVAFSQ 162 (395)
T ss_pred hccCCCchhHHHHHHHHHHHHHHHhcCcccCCccceeeeeecCc--------------ccHHHHHHHHhcCceeEEeecc
Confidence 3578877777667667777788888888888855442 22212 1577777776655555443444
Q ss_pred CCCcceeccccCCCccccCCCcccC-CCCCcccEEeecCC---CCCChhHHHHHHHHHHHHHHHHcCCC
Q psy8693 190 APGVQVQVSPIIGPILWYDPYQDIG-AGKGKYYAVNIPLR---DGMDDESYESIFVPIISKVMETFQPS 254 (282)
Q Consensus 190 ~Pgvq~~f~p~~~~~~~~~~~~e~G-~g~g~g~~~N~pl~---~g~~d~~y~~~~~~~~~~~~~~f~P~ 254 (282)
+|....- -+|.-.+ +.- .-...++-.++++. ..-..+.|+.+|.+.|..-|..|-=+
T Consensus 163 YPQyS~s---TsGSSln-----~l~r~~r~~~~~~~~~wsiIdrW~t~~glIkafA~~I~keL~~F~~~ 223 (395)
T KOG1321|consen 163 YPQYSCS---TSGSSLN-----ELWRQFREDGYERDIKWSIIDRWPTREGLIKAFAENIEKELQTFPEP 223 (395)
T ss_pred CCceeee---cCcccHH-----HHHHHHHhcCcccCCceEeeccccccchHHHHHHHHHHHHHHhcCCc
Confidence 4433210 0111000 000 00112344455553 45567789999999999999998633
No 57
>PLN02825 amino-acid N-acetyltransferase
Probab=54.51 E-value=30 Score=34.72 Aligned_cols=62 Identities=13% Similarity=0.243 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q psy8693 51 YESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 51 y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~ 120 (282)
|...|++.+ |-+++|+=..+||-.|-.++..+ + .+.+..-...+.+.+.++|+|.|||...+
T Consensus 1 ~v~~fr~a~-pYI~~~rgktfVIk~gG~~l~~~-----~--~~~l~~DialL~~lGi~~VlVHGggpqI~ 62 (515)
T PLN02825 1 FVRWFREAW-PYIQGHRGSTFVVVISGEVVAGP-----H--LDNILQDISLLHGLGIKFVLVPGTHVQID 62 (515)
T ss_pred ChhHHHhhh-HHHHHHCCCEEEEEECchhhcCc-----h--HHHHHHHHHHHHHCCCCEEEEcCCCHHHH
Confidence 345677765 88999999999999998887633 1 23344445566778999999999998763
No 58
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=54.10 E-value=23 Score=32.66 Aligned_cols=64 Identities=13% Similarity=0.230 Sum_probs=49.6
Q ss_pred HHHHHHHcCCCEEEEecC---CCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEE-------eCC--CCCcChh
Q psy8693 59 ISKVMETFQPSAVVLQCG---ADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMV-------GGG--GYTIRNV 122 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G---~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v-------~eG--GY~~~~~ 122 (282)
+.+++++.+||+||-+|. +|..+.+|.-.+.+...+=..+.+.+++.+.++|-+ |.+ .|.....
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~e~A~~vNa~~~~~lA~aa~~~ga~lVhiSTDyVFDG~~~~~Y~E~D~ 117 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEPELAFAVNATGAENLARAAAEVGARLVHISTDYVFDGEKGGPYKETDT 117 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCHHHHHHhHHHHHHHHHHHHHHhCCeEEEeecceEecCCCCCCCCCCCC
Confidence 556778899999999987 588888888888888888888899999888776633 544 3866544
No 59
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=50.49 E-value=49 Score=32.76 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=29.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8693 59 ISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGY 117 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY 117 (282)
+...+.+++||+|.+++ +..+.....++.+.+++..-.+.+|+||.+
T Consensus 55 ~~~~l~~~~pdvVgis~------------~t~~~~~a~~~~~~~k~~~P~~~iV~GG~h 101 (497)
T TIGR02026 55 LVERLRAHCPDLVLITA------------ITPAIYIACETLKFARERLPNAIIVLGGIH 101 (497)
T ss_pred HHHHHHhcCcCEEEEec------------CcccHHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 33566789999999974 222344445667777776434455555543
No 60
>cd06558 crotonase-like Crotonase/Enoyl-Coenzyme A (CoA) hydratase superfamily. This superfamily contains a diverse set of enzymes including enoyl-CoA hydratase, napthoate synthase, methylmalonyl-CoA decarboxylase, 3-hydoxybutyryl-CoA dehydratase, and dienoyl-CoA isomerase. Many of these play important roles in fatty acid metabolism. In addition to a conserved structural core and the formation of trimers (or dimers of trimers), a common feature in this superfamily is the stabilization of an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two conserved backbone NH groups in active sites that form an oxyanion hole.
Probab=50.19 E-value=75 Score=26.54 Aligned_cols=70 Identities=14% Similarity=0.043 Sum_probs=37.9
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCCCEEEEec-------CCCCCCCCcCCCC----CCCHHHHHHHHHHHHhcCCCEEEEe
Q psy8693 45 GMDDESYESIFVPIISKVMETFQPSAVVLQC-------GADSLTGDRLGCF----NLTVRGHGKCVEFVKRYNLPFLMVG 113 (282)
Q Consensus 45 g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~-------G~D~~~~Dplg~~----~lt~~~~~~~~~~~~~~~~~~~~v~ 113 (282)
.+=+.+.++.+.+.+..+-+.-...+||+.. |.|...--..... .--.+.+..+.+.+..+.+|++.+.
T Consensus 21 N~~~~~~~~~l~~~l~~~~~d~~~~~vvl~~~~~~Fs~G~dl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~p~Ia~v 100 (195)
T cd06558 21 NALSLEMLDELAAALDEAEADPDVRVVVLTGAGKAFCAGADLKELAALSDAGEEARAFIRELQELLRALLRLPKPVIAAV 100 (195)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhcccccchhHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 3445567777777776665556667777744 4443211000000 0012223345566667799999877
Q ss_pred C
Q psy8693 114 G 114 (282)
Q Consensus 114 e 114 (282)
.
T Consensus 101 ~ 101 (195)
T cd06558 101 N 101 (195)
T ss_pred C
Confidence 5
No 61
>PRK07854 enoyl-CoA hydratase; Provisional
Probab=50.10 E-value=79 Score=28.05 Aligned_cols=75 Identities=15% Similarity=0.147 Sum_probs=40.0
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPF 109 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~ 109 (282)
++|=|=....=+.+.+..+.+.+..+.+. ..-+||+ ++|.|.-.... .-.+ .+.+..+.+.+..+.+|+
T Consensus 14 tlnrp~~~Nal~~~~~~~l~~al~~~~~~-~vr~vvl~g~g~~F~aG~Dl~~~~~--~~~~-~~~~~~~~~~l~~~~kP~ 89 (243)
T PRK07854 14 ELQRPERRNALNAELCEELREAVRKAVDE-SARAIVLTGQGTVFCAGADLSGDVY--ADDF-PDALIEMLHAIDAAPVPV 89 (243)
T ss_pred EeCCCccccCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCceecccCCccchh--HHHH-HHHHHHHHHHHHhCCCCE
Confidence 34545444555666777777777654433 5555655 45666542100 0000 112234556667788999
Q ss_pred EEEeCC
Q psy8693 110 LMVGGG 115 (282)
Q Consensus 110 ~~v~eG 115 (282)
|....|
T Consensus 90 Iaav~G 95 (243)
T PRK07854 90 IAAING 95 (243)
T ss_pred EEEecC
Confidence 987763
No 62
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=50.01 E-value=69 Score=25.60 Aligned_cols=41 Identities=24% Similarity=0.215 Sum_probs=32.5
Q ss_pred HHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 63 METFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 63 ~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
+..-++|.||+.+| |+ +|.-+.+.+++.+.+++++.-....
T Consensus 95 ~~~~~~d~ivLvSg-D~--------------Df~~~i~~lr~~G~~V~v~~~~~~~ 135 (149)
T cd06167 95 AYKRRIDTIVLVSG-DS--------------DFVPLVERLRELGKRVIVVGFEAKT 135 (149)
T ss_pred hhhcCCCEEEEEEC-Cc--------------cHHHHHHHHHHcCCEEEEEccCccC
Confidence 33448999999998 54 7888999999999999888876333
No 63
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=49.58 E-value=25 Score=33.61 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCCCEEEEec
Q psy8693 230 GMDDESYESIFVPIISKVMETFQPSAVVLQC 260 (282)
Q Consensus 230 g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsa 260 (282)
..+.+++++.-.++|+..++.||||++||-+
T Consensus 84 ~~~l~e~~~~Rs~lil~t~~~fkPDi~IVd~ 114 (400)
T COG4671 84 DGDLEETKKLRSQLILSTAETFKPDIFIVDK 114 (400)
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCEEEEec
Confidence 3447889888889999999999999999853
No 64
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=49.58 E-value=34 Score=34.10 Aligned_cols=58 Identities=17% Similarity=0.294 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~ 120 (282)
..+++.|..+.++++|++|+|.+.+ -.+.+|.+..+ ++.+..-+.|++.+--.||...
T Consensus 71 ~~L~~aI~~~~~~~~P~~I~V~sTC~selIGdDi~~~----------~~~~~~~~~pvi~v~t~gf~g~ 129 (511)
T TIGR01278 71 TRLVDTVRRVDDRFKPDLIVVTPSCTSSLLQEDLGNL----------AAAAGLDKSKVIVADVNAYRRK 129 (511)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCChHHHhccCHHHH----------HHHhccCCCcEEEecCCCcccc
Confidence 4566677788889999998888876 66666655432 2322222689999988998764
No 65
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=49.55 E-value=16 Score=29.09 Aligned_cols=39 Identities=15% Similarity=0.316 Sum_probs=24.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC
Q psy8693 222 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA 262 (282)
Q Consensus 222 ~~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~ 262 (282)
..|.-.+ |.+..+++..+.+.+++ +...+||+|||+.|.
T Consensus 33 ~~n~~~~-G~~~~~~~~~~~~~~~~-~~~~~~d~vvi~~G~ 71 (179)
T PF13472_consen 33 VYNLGVS-GATSSDFLARLQRDVLR-FKDPKPDLVVISFGT 71 (179)
T ss_dssp EEEEE-T-T-BHHHHHHHHHHHCHH-HCGTTCSEEEEE--H
T ss_pred EEEEeec-CccHhHHHHHHHHHHhh-hccCCCCEEEEEccc
Confidence 3555554 34455566667666555 688999999999985
No 66
>PRK09674 enoyl-CoA hydratase-isomerase; Provisional
Probab=48.89 E-value=78 Score=28.22 Aligned_cols=75 Identities=16% Similarity=0.173 Sum_probs=39.2
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCC---CCcCCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLT---GDRLGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~---~Dplg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
+|=|=...+=+.+.+..+.+.+..+-+.-..-+||+ ++|.|... .|.... + .+.+..+.+.+..+.+
T Consensus 17 lnrp~~~Nal~~~~~~~L~~~~~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~--~-~~~~~~~~~~l~~~~k 93 (255)
T PRK09674 17 LNRPEARNALNNALLTQLVNELEAAATDTSIGVCVITGNARFFAAGADLNEMAEKDLAAT--L-NDPRPQLWQRLQAFNK 93 (255)
T ss_pred EcCCCccCCCCHHHHHHHHHHHHHHhhCCCcEEEEEECCCCceecccChHhHhccchhhh--H-HHHHHHHHHHHHhCCC
Confidence 444433345566777777777765444333345655 45555432 111000 0 1223345666777899
Q ss_pred CEEEEeCC
Q psy8693 108 PFLMVGGG 115 (282)
Q Consensus 108 ~~~~v~eG 115 (282)
|+|....|
T Consensus 94 PvIAav~G 101 (255)
T PRK09674 94 PLIAAVNG 101 (255)
T ss_pred CEEEEECC
Confidence 99877654
No 67
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=48.31 E-value=1e+02 Score=29.39 Aligned_cols=64 Identities=19% Similarity=0.253 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcChhHHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
..+.+.|..+.++++|++|+|... .....+|- +..+.+.+. +.+.|++.+--.||.-.+....+
T Consensus 73 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGdD----------i~~v~~~~~~~~~~~vi~v~t~gf~g~~~~~G~ 138 (406)
T cd01967 73 KKLKKAIKEAYERFPPKAIFVYSTCPTGLIGDD----------IEAVAKEASKELGIPVIPVNCEGFRGVSQSLGH 138 (406)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhccC----------HHHHHHHHHHhhCCCEEEEeCCCeeCCcccHHH
Confidence 466677778888999997776554 34444443 344444444 34789999999988764443333
No 68
>PRK04531 acetylglutamate kinase; Provisional
Probab=48.22 E-value=37 Score=32.89 Aligned_cols=53 Identities=21% Similarity=0.419 Sum_probs=40.9
Q ss_pred HHHHHHcCC----CEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q psy8693 60 SKVMETFQP----SAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 60 ~~~~~~f~P----d~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~ 120 (282)
.+-++.|+- ..+||-.|-.++..+ .+.+......+.+.+.++|+|.|||....
T Consensus 24 ~~~l~~F~~~~~~~~~VIKiGG~~l~~~--------~~~l~~dla~L~~~G~~~VlVHGggpqI~ 80 (398)
T PRK04531 24 SQYLKRFSQLDAERFAVIKVGGAVLRDD--------LEALASSLSFLQEVGLTPIVVHGAGPQLD 80 (398)
T ss_pred HHHHHHHhCcCCCcEEEEEEChHHhhcC--------HHHHHHHHHHHHHCCCcEEEEECCCHHHH
Confidence 355667775 889999998877632 36677777788888999999999998753
No 69
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=47.90 E-value=87 Score=27.03 Aligned_cols=60 Identities=12% Similarity=0.277 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHHHHHc--CCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 48 DESYESIFVPIISKVMETF--QPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f--~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
+......+++++.. +++. +||+||+. | |.... -+.+.|..+.+.+.+.+.|++++. |-.+
T Consensus 20 ~~~~~~~l~~~~~~-i~~~~~~~d~vi~~-G-Dl~~~-------~~~~~~~~~~~~l~~~~~p~~~v~-GNHD 81 (240)
T cd07402 20 GVDTAASLEAVLAH-INALHPRPDLVLVT-G-DLTDD-------GSPESYERLRELLAALPIPVYLLP-GNHD 81 (240)
T ss_pred CcCHHHHHHHHHHH-HHhcCCCCCEEEEC-c-cCCCC-------CCHHHHHHHHHHHhhcCCCEEEeC-CCCC
Confidence 44556778777754 4454 89987743 3 33221 245678888888888888986654 4444
No 70
>PF02585 PIG-L: GlcNAc-PI de-N-acetylase; InterPro: IPR003737 A number of the members of this family have been characterised as a probable N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase, (3.5.1.89 from EC) that catalyses the second step in glycosylphosphatidylinositol (GPI) biosynthesis [, ]. The family also includes a number of thiol biosynthesis proteins. ; PDB: 2XAD_C 2X9L_A 3DFK_A 3DFM_A 3DFF_A 2IXD_A 1UAN_A 1Q74_B 1Q7T_B 3DFI_A.
Probab=47.77 E-value=47 Score=25.96 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCC
Q psy8693 238 SIFVPIISKVMETFQPSAVVLQCGADS 264 (282)
Q Consensus 238 ~~~~~~~~~~~~~f~P~~ivvsaG~D~ 264 (282)
..+.+.|..++++++|++|+.-...|.
T Consensus 86 ~~~~~~l~~~i~~~~p~~V~t~~~~~~ 112 (128)
T PF02585_consen 86 EELVRDLEDLIREFRPDVVFTPDPDDG 112 (128)
T ss_dssp HHHHHHHHHHHHHH-ESEEEEE-STTS
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 344455778889999999999888877
No 71
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.52 E-value=1.1e+02 Score=27.39 Aligned_cols=62 Identities=13% Similarity=0.256 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHH---HHHHHHHHHhcC-CCEEEEeCCCCCcChh
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRG---HGKCVEFVKRYN-LPFLMVGGGGYTIRNV 122 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~---~~~~~~~~~~~~-~~~~~v~eGGY~~~~~ 122 (282)
+....++.++ ..+.+.+||+||++ ||=+-...-+... +.+..+.+++.+ .|++++.| |++..
T Consensus 23 ~~~~~l~~l~-~~~~~~~~D~lli~-------GDi~d~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~G---NHD~~ 88 (253)
T TIGR00619 23 EQKAFLDDLL-EFAKAEQIDALLVA-------GDVFDTANPPAEAQELFNAFFRNLSDANPIPIVVISG---NHDSA 88 (253)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEEC-------CccCCCCCCCHHHHHHHHHHHHHHHhcCCceEEEEcc---CCCCh
Confidence 3455677665 46677899998864 3333333333332 334455555555 77776654 55443
No 72
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=47.05 E-value=1.3e+02 Score=26.10 Aligned_cols=56 Identities=13% Similarity=0.199 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 55 FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 55 ~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
+++++..+-++..-.-++|...+=.. . ..-.|.++-+++.+.+.|+++++|=|+-+
T Consensus 90 le~a~~~I~~~~G~~P~~v~TsAr~~------~---~~is~~~lr~~l~~~~~P~LllFGTGwGL 145 (185)
T PF09936_consen 90 LEEAIEDIEEEEGKRPLLVATSARKY------P---NTISYAELRRMLEEEDRPVLLLFGTGWGL 145 (185)
T ss_dssp HHHHHHHHHHHHSS--EEEE--SS--------S---S-B-HHHHHHHHHH--S-EEEEE--TT--
T ss_pred HHHHHHHHHHHhCCCCEEEEecCcCC------C---CCcCHHHHHHHHhccCCeEEEEecCCCCC
Confidence 44555555555555555554443211 1 12346667777777788999888766543
No 73
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=46.88 E-value=96 Score=30.05 Aligned_cols=59 Identities=19% Similarity=0.339 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCh
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRN 121 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~ 121 (282)
.-+++.|..+.++++|++|+|... .....+|. +..+.+.+++.+.|++.+--.||....
T Consensus 72 ~kL~~~I~~~~~~~~p~~I~V~ttC~~~~IGdD----------i~~v~~~~~~~~~~vi~v~t~gf~g~~ 131 (427)
T cd01971 72 DRLRELIKSTLSIIDADLFVVLTGCIAEIIGDD----------VGAVVSEFQEGGAPIVYLETGGFKGNN 131 (427)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEcCCcHHHhhcC----------HHHHHHHhhhcCCCEEEEECCCcCccc
Confidence 355566667788999998776554 34444443 444555555668899999999997643
No 74
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=46.50 E-value=53 Score=27.81 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred HcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHH----HHHHHHHhc
Q psy8693 65 TFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHG----KCVEFVKRY 105 (282)
Q Consensus 65 ~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~----~~~~~~~~~ 105 (282)
..+||+||+..|. |+.. .+..+.+.|. ++++.+++.
T Consensus 77 ~~~pd~vii~lGtND~~~-----~~~~~~~~~~~~l~~lv~~i~~~ 117 (208)
T cd01839 77 HSPLDLVIIMLGTNDLKS-----YFNLSAAEIAQGLGALVDIIRTA 117 (208)
T ss_pred CCCCCEEEEecccccccc-----ccCCCHHHHHHHHHHHHHHHHhc
Confidence 3799999999998 4432 2334555544 456666654
No 75
>PF13277 YmdB: YmdB-like protein; PDB: 2CV9_B 2Z06_C.
Probab=46.38 E-value=43 Score=30.45 Aligned_cols=61 Identities=10% Similarity=0.189 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChh
Q psy8693 52 ESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNV 122 (282)
Q Consensus 52 ~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~ 122 (282)
++++++.|..+.+++++|+||+.+ ..--+++.||.+.|.+ +.+++.-++-.+--=|+...+
T Consensus 12 r~~v~~~Lp~L~~~~~~DfVIaNg------ENaa~G~Git~~~~~~----L~~~GvDviT~GNH~wdkkei 72 (253)
T PF13277_consen 12 RRAVKEHLPELKEEYGIDFVIANG------ENAAGGFGITPKIAEE----LFKAGVDVITMGNHIWDKKEI 72 (253)
T ss_dssp HHHHHHHHHHHGG--G-SEEEEE-------TTTTTTSS--HHHHHH----HHHHT-SEEE--TTTTSSTTH
T ss_pred HHHHHHHHHHHHhhcCCCEEEECC------cccCCCCCCCHHHHHH----HHhcCCCEEecCcccccCcHH
Confidence 467888899999999999999765 3446678899766654 455666666555555554443
No 76
>PRK07511 enoyl-CoA hydratase; Provisional
Probab=46.35 E-value=66 Score=28.72 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=37.4
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEE-------ecCCCCCCC-----CcCCCCCCCHHHHHHHHHHHH
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVL-------QCGADSLTG-----DRLGCFNLTVRGHGKCVEFVK 103 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv-------~~G~D~~~~-----Dplg~~~lt~~~~~~~~~~~~ 103 (282)
+|=|=...+=+.+.+..+.+.+..+.+ +|+ +||+ ++|.|...- ++.....-....+..+...+.
T Consensus 18 lnrp~~~Nal~~~~~~~l~~~l~~~~~--d~~vr~vVl~g~g~~F~~G~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 95 (260)
T PRK07511 18 LSNPGARNALHPDMYAAGIEALNTAER--DPSIRAVVLTGAGGFFCAGGNLNRLLENRAKPPSVQAASIDGLHDWIRAIR 95 (260)
T ss_pred ECCcccccCCCHHHHHHHHHHHHHhcc--CCCeEEEEEECCCCCcccCcCHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 444433334455666666666654332 454 4555 556664321 111110001123344555666
Q ss_pred hcCCCEEEEeCC
Q psy8693 104 RYNLPFLMVGGG 115 (282)
Q Consensus 104 ~~~~~~~~v~eG 115 (282)
.+.+|+|+...|
T Consensus 96 ~~~kpvIAav~G 107 (260)
T PRK07511 96 AFPKPVIAAVEG 107 (260)
T ss_pred cCCCCEEEEECC
Confidence 788999987765
No 77
>PLN02512 acetylglutamate kinase
Probab=46.07 E-value=68 Score=29.78 Aligned_cols=65 Identities=22% Similarity=0.334 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 48 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
...+...|++.+ |-+.+|+=..+|+=.|-+++.+.. + .+.+.+-...+++.+.++|+|.|||...
T Consensus 28 ~~~~~~~~r~~~-pyi~~~~~~tiVIKlGGs~i~d~~-----~-~~~~~~di~~l~~~g~~iVlVHGgG~~i 92 (309)
T PLN02512 28 NLSRVDILSEAL-PFIQRFRGKTVVVKYGGAAMKDPE-----L-KAGVIRDLVLLSCVGLRPVLVHGGGPEI 92 (309)
T ss_pred hHHHHHHHHHHh-HHHHHHCCCeEEEEECCeeccChh-----H-HHHHHHHHHHHHHCCCCEEEEECCcHHH
Confidence 336778888876 889999999999999977764432 1 2223332335667788999999999853
No 78
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=45.91 E-value=72 Score=24.45 Aligned_cols=15 Identities=13% Similarity=-0.024 Sum_probs=11.9
Q ss_pred HHHHcCCCEEEEecC
Q psy8693 62 VMETFQPSAVVLQCG 76 (282)
Q Consensus 62 ~~~~f~Pd~ivv~~G 76 (282)
.+.+.+||+|.+|+-
T Consensus 45 ~i~~~~pdiV~iS~~ 59 (125)
T cd02065 45 AAKEEDADVVGLSAL 59 (125)
T ss_pred HHHHcCCCEEEEecc
Confidence 344689999999984
No 79
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=45.88 E-value=68 Score=27.64 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=27.3
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
..+++.+||+|.+|+=.. -+.....++.+.+++.+.
T Consensus 129 ~~~~~~~pd~v~lS~~~~-----------~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 129 EKVKKEKPLMLTGSALMT-----------TTMYGQKDINDKLKEEGY 164 (197)
T ss_pred HHHHHcCCCEEEEccccc-----------cCHHHHHHHHHHHHHcCC
Confidence 567899999999998632 345667888888888744
No 80
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=45.77 E-value=1.3e+02 Score=28.98 Aligned_cols=57 Identities=7% Similarity=0.233 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEec-CCCCCCCCcCCCCCCCHHHHHHHHHHHHh-----cCCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQC-GADSLTGDRLGCFNLTVRGHGKCVEFVKR-----YNLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~-G~D~~~~Dplg~~~lt~~~~~~~~~~~~~-----~~~~~~~v~eGGY~~ 119 (282)
..+.+.|..+.+.++|++|+|.. ......+|- +..+.+.+.+ .+.|++.+--.||.-
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~v~~tC~~~liGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 129 (428)
T cd01965 67 DNLIEALKNLLSRYKPDVIGVLTTCLTETIGDD----------VAGFIKEFRAEGPEPADFPVVYASTPSFKG 129 (428)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcchhhcCCC----------HHHHHHHHHhhccCCCCCeEEEeeCCCCCC
Confidence 35556667778899999766544 445555553 3444555543 467788887778774
No 81
>PRK07658 enoyl-CoA hydratase; Provisional
Probab=45.39 E-value=82 Score=28.02 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=39.9
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCCCCCCH----HHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGCFNLTV----RGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~~~lt~----~~~~~~~~~~~~~ 105 (282)
++|-| +..+=+.+.+..+.+.+..+.+.-...+||+ ++|.|...-..... .-.. .....+.+.+..+
T Consensus 16 tl~rp-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~ 93 (257)
T PRK07658 16 TLNHP-PANALSSQVLHELSELLDQVEKDDNVRVVVIHGEGRFFSAGADIKEFTSVTE-AEQATELAQLGQVTFERVEKF 93 (257)
T ss_pred EECCC-CCCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCceEeCcCHHHHhccCc-hhhHHHHHHHHHHHHHHHHhC
Confidence 45555 3355567777888888766554434445655 45565432100000 0011 1123345556677
Q ss_pred CCCEEEEeCC
Q psy8693 106 NLPFLMVGGG 115 (282)
Q Consensus 106 ~~~~~~v~eG 115 (282)
.+|+|....|
T Consensus 94 ~kpvIAav~G 103 (257)
T PRK07658 94 SKPVIAAIHG 103 (257)
T ss_pred CCCEEEEEcC
Confidence 8999876654
No 82
>KOG4184|consensus
Probab=45.24 E-value=19 Score=34.32 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEe
Q psy8693 236 YESIFVPIISKVMETFQPSAVVLQ 259 (282)
Q Consensus 236 y~~~~~~~~~~~~~~f~P~~ivvs 259 (282)
-+.+++ .+..+++.||||+||||
T Consensus 223 ~m~~~E-~f~~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 223 HMRAVE-QFTDALKMFQPDLVVVS 245 (478)
T ss_pred HHHHHH-HHHHHHHHhCCCEEEEe
Confidence 345554 45688899999999997
No 83
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.08 E-value=58 Score=26.85 Aligned_cols=37 Identities=11% Similarity=0.188 Sum_probs=22.7
Q ss_pred HcCCCEEEEecCCCCCCCCcCCCCCCCH----HHHHHHHHHHHhc
Q psy8693 65 TFQPSAVVLQCGADSLTGDRLGCFNLTV----RGHGKCVEFVKRY 105 (282)
Q Consensus 65 ~f~Pd~ivv~~G~D~~~~Dplg~~~lt~----~~~~~~~~~~~~~ 105 (282)
.++||+|+++.|..=... ...-+. +.+..+++.+++.
T Consensus 65 ~~~pd~Vii~~G~ND~~~----~~~~~~~~~~~~l~~li~~i~~~ 105 (188)
T cd01827 65 AFNPNIVIIKLGTNDAKP----QNWKYKDDFKKDYETMIDSFQAL 105 (188)
T ss_pred ccCCCEEEEEcccCCCCC----CCCccHHHHHHHHHHHHHHHHHH
Confidence 579999999999743221 111122 4555667776664
No 84
>PRK08138 enoyl-CoA hydratase; Provisional
Probab=44.89 E-value=75 Score=28.45 Aligned_cols=78 Identities=17% Similarity=0.173 Sum_probs=38.5
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPF 109 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~ 109 (282)
++|=|=...+=+.+.+..+.+.+..+.+.-..-+||+ ++|.|...--.........+....+.+.+..+.+|+
T Consensus 22 tlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kPv 101 (261)
T PRK08138 22 RLNRPEARNALNMEVRQQLAEHFTELSEDPDIRAIVLTGGEKVFAAGADIKEFATAGAIEMYLRHTERYWEAIAQCPKPV 101 (261)
T ss_pred EEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCCeeCCcCHHHHhccchhHHHHHHHHHHHHHHHhCCCCE
Confidence 5565554455567777777777765443333344555 344443210000000000112233455666788999
Q ss_pred EEEeC
Q psy8693 110 LMVGG 114 (282)
Q Consensus 110 ~~v~e 114 (282)
|+..-
T Consensus 102 Iaav~ 106 (261)
T PRK08138 102 IAAVN 106 (261)
T ss_pred EEEEc
Confidence 86654
No 85
>PRK06495 enoyl-CoA hydratase; Provisional
Probab=44.68 E-value=73 Score=28.45 Aligned_cols=78 Identities=18% Similarity=0.274 Sum_probs=39.9
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEe-------cCCCCCCCCcC--CCCCC--CHHHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQ-------CGADSLTGDRL--GCFNL--TVRGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~-------~G~D~~~~Dpl--g~~~l--t~~~~~~~~~~~~~~ 105 (282)
++|=| +...=+.+.+..+.+.+..+-+.-..-+||+. +|.|...-... ..-.. ..+.+..+.+.+..+
T Consensus 18 tlnrp-~~Nal~~~~~~~l~~al~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 96 (257)
T PRK06495 18 TLDNP-PVNALSRELRDELIAVFDEISERPDVRVVVLTGAGKVFCAGADLKGRPDVIKGPGDLRAHNRRTRECFHAIREC 96 (257)
T ss_pred EECCC-ccccCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCcccCcCHHhHhhccCCchhHHHHHHHHHHHHHHHHhC
Confidence 56666 34555677777777777665444344456653 34443321000 00000 011223345556677
Q ss_pred CCCEEEEeCC
Q psy8693 106 NLPFLMVGGG 115 (282)
Q Consensus 106 ~~~~~~v~eG 115 (282)
.+|+|....|
T Consensus 97 ~kPvIAav~G 106 (257)
T PRK06495 97 AKPVIAAVNG 106 (257)
T ss_pred CCCEEEEECC
Confidence 8899877654
No 86
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=44.11 E-value=42 Score=28.83 Aligned_cols=64 Identities=17% Similarity=0.413 Sum_probs=34.9
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHH----HHHHHhc--CCCEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKC----VEFVKRY--NLPFL 110 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~----~~~~~~~--~~~~~ 110 (282)
.+|+.+.-.+ .++..+...+.+..+|++++.||.. .|.+.|... ++.+++. ..|||
T Consensus 36 ~iNLGfsG~~-------~le~~~a~~ia~~~a~~~~ld~~~N-----------~~~~~~~~~~~~fv~~iR~~hP~tPIl 97 (178)
T PF14606_consen 36 VINLGFSGNG-------KLEPEVADLIAEIDADLIVLDCGPN-----------MSPEEFRERLDGFVKTIREAHPDTPIL 97 (178)
T ss_dssp EEEEE-TCCC-------S--HHHHHHHHHS--SEEEEEESHH-----------CCTTTHHHHHHHHHHHHHTT-SSS-EE
T ss_pred eEeeeecCcc-------ccCHHHHHHHhcCCCCEEEEEeecC-----------CCHHHHHHHHHHHHHHHHHhCCCCCEE
Confidence 4677765533 2334444556677889999999976 455566553 4555554 68998
Q ss_pred EEeCCCCC
Q psy8693 111 MVGGGGYT 118 (282)
Q Consensus 111 ~v~eGGY~ 118 (282)
++--=.|.
T Consensus 98 lv~~~~~~ 105 (178)
T PF14606_consen 98 LVSPIPYP 105 (178)
T ss_dssp EEE----T
T ss_pred EEecCCcc
Confidence 88644454
No 87
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=44.05 E-value=1.1e+02 Score=29.54 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCH---HHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTV---RGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~---~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
+....++.++ .++.+.+||+||++ | |.. -...-+. +-+.++.+.+++.+.|+++ ..|-.+.
T Consensus 23 ~~~~~l~~l~-~~i~~~~~D~viIa-G-Dif-----D~~~p~~~a~~~~~~~l~~L~~~~~~v~~-I~GNHD~ 86 (407)
T PRK10966 23 EHQAFLDWLL-EQVQEHQVDAIIVA-G-DIF-----DTGSPPSYARELYNRFVVNLQQTGCQLVV-LAGNHDS 86 (407)
T ss_pred HHHHHHHHHH-HHHHhcCCCEEEEC-C-ccc-----cCCCCcHHHHHHHHHHHHHHHhcCCcEEE-EcCCCCC
Confidence 4455565554 66788999999874 2 333 1111122 2234455566666778765 4565554
No 88
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=43.30 E-value=1.2e+02 Score=29.53 Aligned_cols=56 Identities=11% Similarity=0.217 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHHh----cCCCEEEEeCCCCC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVKR----YNLPFLMVGGGGYT 118 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~~----~~~~~~~v~eGGY~ 118 (282)
.-+++.|..+.++++|++|+|... .....+|- +..+.+.+++ .+.|++.|--.||.
T Consensus 70 ~kL~~aI~~~~~~~~P~~I~V~ttc~~~iiGdD----------i~~v~~~~~~~~~~~~~~vi~v~t~gF~ 130 (429)
T cd03466 70 KNLKKGLKNVIEQYNPEVIGIATTCLSETIGED----------VPRIIREFREEVDDSEPKIIPASTPGYG 130 (429)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHHHhhcC----------HHHHHHHHhhcccCCCCcEEEEECCCCc
Confidence 356666777888999998766543 34444443 2333443333 24566666666665
No 89
>PRK06190 enoyl-CoA hydratase; Provisional
Probab=42.58 E-value=1.2e+02 Score=27.32 Aligned_cols=78 Identities=12% Similarity=0.040 Sum_probs=39.3
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcC-CCCCCCHHHHHHHHHHHHhcCCC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRL-GCFNLTVRGHGKCVEFVKRYNLP 108 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dpl-g~~~lt~~~~~~~~~~~~~~~~~ 108 (282)
++|=|=...+=+.+.+..+.+.+..+-..=..-+||+ ++|.|...-... .... ....+..+.+.+..+.+|
T Consensus 18 tlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~FcaG~Dl~~~~~~~~~~~-~~~~~~~~~~~i~~~~kP 96 (258)
T PRK06190 18 TLNRPEARNALSAALRRALFAALAEADADDDVDVVVLTGADPAFCAGLDLKELGGDGSAYG-AQDALPNPSPAWPAMRKP 96 (258)
T ss_pred EEcCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEEECCCCCccCCcCHHHHhcccchhh-HHHHHHHHHHHHHhCCCC
Confidence 3444444445566777777777765443322334554 455554321000 0000 012234456667778999
Q ss_pred EEEEeCC
Q psy8693 109 FLMVGGG 115 (282)
Q Consensus 109 ~~~v~eG 115 (282)
+|....|
T Consensus 97 vIAaV~G 103 (258)
T PRK06190 97 VIGAING 103 (258)
T ss_pred EEEEECC
Confidence 9876544
No 90
>COG1692 Calcineurin-like phosphoesterase [General function prediction only]
Probab=42.52 E-value=62 Score=29.41 Aligned_cols=59 Identities=8% Similarity=0.177 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q psy8693 52 ESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 52 ~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~ 120 (282)
+.++.+.|..+..+|++|+||+.+ ..--|++.||.+-|.. +++++.-++-++.-=|...
T Consensus 15 r~~v~~~Lp~lk~kyk~dfvI~N~------ENaa~G~Git~k~y~~----l~~~G~dviT~GNH~wd~~ 73 (266)
T COG1692 15 RKAVKEHLPQLKSKYKIDFVIVNG------ENAAGGFGITEKIYKE----LLEAGADVITLGNHTWDQK 73 (266)
T ss_pred HHHHHHHhHHHHHhhcCcEEEEcC------ccccCCcCCCHHHHHH----HHHhCCCEEecccccccch
Confidence 457788888899999999999875 4556778899776654 5666766666665555433
No 91
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=42.12 E-value=1.2e+02 Score=30.42 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcChh
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTIRNV 122 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~~~~ 122 (282)
..+.+.|..+.++|+|++|+|.+++=+ .+--++...+++.+. +.+.|++.+--.||.....
T Consensus 71 ~kL~~~I~~~~~~~~P~~I~V~tTC~~---------eiIGDDi~~v~~~~~~~~~~pVi~v~t~~f~g~~~ 132 (513)
T CHL00076 71 EKVVDNITRKDKEERPDLIVLTPTCTS---------SILQEDLQNFVDRASIESDSDVILADVNHYRVNEL 132 (513)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCch---------hhhhcCHHHHHHHhhcccCCCEEEeCCCCCcccHH
Confidence 456667777889999999999887421 122233444555544 3578999999999986543
No 92
>PHA02546 47 endonuclease subunit; Provisional
Probab=41.98 E-value=1.4e+02 Score=28.02 Aligned_cols=61 Identities=10% Similarity=0.133 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCC-CCCHHHHH---H-HHHHHHhcCCCEEEEeCCCCC
Q psy8693 49 ESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCF-NLTVRGHG---K-CVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 49 ~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~-~lt~~~~~---~-~~~~~~~~~~~~~~v~eGGY~ 118 (282)
+.+...+++++ ..+++.+||+||+. | |.. -.. ..+.+... . +.+.+++.++|++++. |-.+
T Consensus 22 ~~~~~~l~~ii-~~a~~~~vD~Vlia-G-Dlf-----D~~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~-GNHD 87 (340)
T PHA02546 22 NYQLKFIKQAI-EYSKAHGITTWIQL-G-DTF-----DVRKAITQNTMNFVREKIFDLLKEAGITLHVLV-GNHD 87 (340)
T ss_pred HHHHHHHHHHH-HHHHHcCCCEEEEC-C-ccc-----CCCCCCCHHHHHHHHHHHHHHHHHCCCeEEEEc-cCCC
Confidence 44667788776 56788999999863 2 333 221 23333322 2 3556666788877654 5555
No 93
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=41.88 E-value=30 Score=28.71 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 235 SYESIFVPIISKVMETFQPSAVVL 258 (282)
Q Consensus 235 ~y~~~~~~~~~~~~~~f~P~~ivv 258 (282)
-+...+.+.+.+.+++++||+||.
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 455666677889999999999984
No 94
>KOG4184|consensus
Probab=41.84 E-value=30 Score=33.11 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEe
Q psy8693 52 ESIFVPIISKVMETFQPSAVVLQ 74 (282)
Q Consensus 52 ~~~~~~~l~~~~~~f~Pd~ivv~ 74 (282)
+.+++. +..++++|+||+|||+
T Consensus 224 m~~~E~-f~~Al~~fqPdLvVvs 245 (478)
T KOG4184|consen 224 MRAVEQ-FTDALKMFQPDLVVVS 245 (478)
T ss_pred HHHHHH-HHHHHHHhCCCEEEEe
Confidence 456654 4578899999999986
No 95
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=41.46 E-value=1e+02 Score=29.70 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~~ 120 (282)
..+++.|..+.++++|++|+|.+. .....+|.+ ..+.+.+. +.+.|++.+--.||...
T Consensus 71 ~kL~~~I~~~~~~~~p~~I~v~~tC~~~iIGdDi----------~~v~~~~~~~~~~~vi~v~t~gf~g~ 130 (430)
T cd01981 71 EKVVENITRKDKEEKPDLIVLTPTCTSSILQEDL----------QNFVRAAGLSSKSPVLPLDVNHYRVN 130 (430)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccHHHHhhCH----------HHHHHHhhhccCCCeEEecCCCccch
Confidence 356666777888999998887766 455555543 34444443 35789999999999754
No 96
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=40.90 E-value=32 Score=28.57 Aligned_cols=24 Identities=17% Similarity=0.515 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
.+...+.+-+.+.+++++||+||-
T Consensus 72 ~~~~~~~~~l~~~l~~~~PD~IIs 95 (169)
T PF06925_consen 72 ALSRLFARRLIRLLREFQPDLIIS 95 (169)
T ss_pred HHHHHHHHHHHHHHhhcCCCEEEE
Confidence 455666677888999999999984
No 97
>KOG1432|consensus
Probab=40.27 E-value=87 Score=29.90 Aligned_cols=49 Identities=20% Similarity=0.339 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHH----HhcCCCEEEEeCC
Q psy8693 58 IISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFV----KRYNLPFLMVGGG 115 (282)
Q Consensus 58 ~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~----~~~~~~~~~v~eG 115 (282)
.|.++++.-+||+||+. ||-+-+ -+.+++..+..++ .+.++|.++++|=
T Consensus 91 F~~rvL~sE~PDlVVfT-------GD~i~g--~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 91 FVSRVLASEKPDLVVFT-------GDNIFG--HSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred HHHHHHhccCCCEEEEe-------CCcccc--cccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 45677789999999975 454433 5677777665443 3469999999974
No 98
>cd07384 MPP_Cdc1_like Saccharomyces cerevisiae CDC1 and related proteins, metallophosphatase domain. Cdc1 (also known as XlCdc1 in Xenopus laevis) is an endoplasmic reticulum-localized transmembrane lipid phosphatase with a metallophosphatase domain facing the ER lumen. In budding yeast, the gene encoding CDC1 is essential while nonlethal mutations cause defects in Golgi inheritance and actin polarization. Cdc1 mutant cells accumulate an unidentified phospholipid, suggesting that Cdc1 is a lipid phosphatase. Cdc1 mutant cells also have highly elevated intracellular calcium levels suggesting a possible role for Cdc1 in calcium regulation. The 5' flanking region of Cdc1 is a regulatory region with conserved binding site motifs for AP1, AP2, Sp1, NF-1 and CREB. DNA polymerase delta consists of at least four subunits - Pol3, Cdc1, Cdc27, and Cdm1. This group also contains Saccharomyces cerevisiae TED1 (Trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), which acts together wit
Probab=39.92 E-value=1.4e+02 Score=24.94 Aligned_cols=18 Identities=11% Similarity=0.394 Sum_probs=13.1
Q ss_pred HHHHHHHHHcCCCEEEEe
Q psy8693 57 PIISKVMETFQPSAVVLQ 74 (282)
Q Consensus 57 ~~l~~~~~~f~Pd~ivv~ 74 (282)
+.+..++++.+||+||+.
T Consensus 35 ~~~~~~i~~~~pd~vi~l 52 (171)
T cd07384 35 RAFKTALQRLKPDVVLFL 52 (171)
T ss_pred HHHHHHHHhcCCCEEEEe
Confidence 444566679999999853
No 99
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=39.69 E-value=1.1e+02 Score=25.69 Aligned_cols=47 Identities=13% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 59 ISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
+...+++.+||+|+|..| +++.=.++.+.....+.++++..||-.+.
T Consensus 91 i~~~I~~~~pdiv~vglG--------------~PkQE~~~~~~~~~l~~~v~~~vG~~~d~ 137 (171)
T cd06533 91 IIERINASGADILFVGLG--------------APKQELWIARHKDRLPVPVAIGVGGSFDF 137 (171)
T ss_pred HHHHHHHcCCCEEEEECC--------------CCHHHHHHHHHHHHCCCCEEEEeceeeEe
Confidence 445678899999999988 45554555555555566666655665553
No 100
>TIGR03189 dienoyl_CoA_hyt cyclohexa-1,5-dienecarbonyl-CoA hydratase. This enzyme, cyclohexa-1,5-dienecarbonyl-CoA hydratase, also called dienoyl-CoA hydratase, acts on the product of benzoyl-CoA reductase (EC 1.3.99.15). Benzoyl-CoA is a common intermediate in the degradation of many aromatic compounds, and this enzyme is part of an anaerobic pathway for dearomatization and degradation.
Probab=39.59 E-value=92 Score=27.80 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=38.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPF 109 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~ 109 (282)
++|=| +...=+.+.+..+.+.+..+-+.=...+||+ ++|.|...--+...-. ....+..+...+..+.+|+
T Consensus 15 tlnrp-~~Nal~~~~~~~l~~~l~~~~~~~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~-~~~~~~~~~~~l~~~~kPv 92 (251)
T TIGR03189 15 RLARP-KANIVDAAMIAALSAALGEHLEDSALRAVLLDAEGPHFSFGASVAEHMPDQCAA-MLASLHKLVIAMLDSPVPI 92 (251)
T ss_pred EeCCC-CcCCCCHHHHHHHHHHHHHHHcCCCceEEEEECCCCceecCcChhhhCchhHHH-HHHHHHHHHHHHHhCCCCE
Confidence 45555 3345566777788887766443333335655 3344432200000000 0111233455566778999
Q ss_pred EEEeCC
Q psy8693 110 LMVGGG 115 (282)
Q Consensus 110 ~~v~eG 115 (282)
|....|
T Consensus 93 Iaav~G 98 (251)
T TIGR03189 93 LVAVRG 98 (251)
T ss_pred EEEecC
Confidence 977655
No 101
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=39.37 E-value=1.7e+02 Score=28.44 Aligned_cols=67 Identities=10% Similarity=0.175 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHh-----cCCCEEEEeCCCCCcChhHHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKR-----YNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~-----~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
.-+.+.|..+.++|+|++|+|.+.+ ....+|-+ ..+.+.+++ .+.|++.+-..||.- +....+
T Consensus 77 ~~L~~~I~~~~~~~~P~~I~V~ttC~~eiIGDDi----------~~v~~~~~~e~p~~~~~pvi~v~tpgf~g-~~~~G~ 145 (432)
T TIGR01285 77 EHIEEAIDTLCQRNKPKAIGLLSTGLTETRGEDI----------ARVVRQFREKHPQHKGTAVVTVNTPDFKG-SLEDGY 145 (432)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccccccCH----------HHHHHHHHhhcccccCCeEEEecCCCcCC-chHHHH
Confidence 3556666778889999988876653 33555533 344444443 378999999999985 434444
Q ss_pred HHHH
Q psy8693 127 TYET 130 (282)
Q Consensus 127 ~~~~ 130 (282)
...+
T Consensus 146 ~~a~ 149 (432)
T TIGR01285 146 AAAV 149 (432)
T ss_pred HHHH
Confidence 4333
No 102
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=39.35 E-value=46 Score=31.95 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.6
Q ss_pred CChhHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy8693 46 MDDESYESIFVPIISKVMETFQPSAVVLQ 74 (282)
Q Consensus 46 ~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~ 74 (282)
.++++.++.=.++|...++.||||++||-
T Consensus 85 ~~l~e~~~~Rs~lil~t~~~fkPDi~IVd 113 (400)
T COG4671 85 GDLEETKKLRSQLILSTAETFKPDIFIVD 113 (400)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 45788888888999999999999999985
No 103
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=39.26 E-value=1.2e+02 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=26.0
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
..+++.+||+|+|..| +++.=.++.+.....+.++++..||-.+
T Consensus 95 ~~I~~~~pdiv~vglG--------------~PkQE~~~~~~~~~l~~~v~i~vG~~~d 138 (172)
T PF03808_consen 95 NRINASGPDIVFVGLG--------------APKQERWIARHRQRLPAGVIIGVGGAFD 138 (172)
T ss_pred HHHHHcCCCEEEEECC--------------CCHHHHHHHHHHHHCCCCEEEEECchhh
Confidence 3456778888887777 3444455555555566664444444433
No 104
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=39.15 E-value=74 Score=31.44 Aligned_cols=56 Identities=9% Similarity=0.153 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCC
Q psy8693 54 IFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYT 118 (282)
Q Consensus 54 ~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~ 118 (282)
.+.+++..++++|+|++|||-+++=+ +-.. .+...+.+.+. +.++|||.+-..|+.
T Consensus 84 ~L~~~i~ei~~~~~p~~ifv~~TC~t------~iIG---dDle~va~~~~~~~gipVV~v~~~Gf~ 140 (457)
T CHL00073 84 ELKRLCLQIKKDRNPSVIVWIGTCTT------EIIK---MDLEGMAPKLEAEIGIPIVVARANGLD 140 (457)
T ss_pred HHHHHHHHHHHhCCCCEEEEEccCcH------Hhhc---cCHHHHHHHHHHhhCCCEEEEeCCCcc
Confidence 55667778899999999999887421 1111 22334444444 569999999999997
No 105
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=38.99 E-value=73 Score=28.87 Aligned_cols=50 Identities=20% Similarity=0.408 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8693 54 IFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 54 ~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eG 115 (282)
-.++++...+++|+||++|+-+= -+ ...|=...-+++++.++|++++.-+
T Consensus 47 ~~~~~~~~~~~~~~pDf~i~isP--------N~----a~PGP~~ARE~l~~~~iP~IvI~D~ 96 (277)
T PRK00994 47 EVEEVVKKMLEEWKPDFVIVISP--------NP----AAPGPKKAREILKAAGIPCIVIGDA 96 (277)
T ss_pred HHHHHHHHHHHhhCCCEEEEECC--------CC----CCCCchHHHHHHHhcCCCEEEEcCC
Confidence 34456666778999999998753 21 1122234456677789999888754
No 106
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.70 E-value=73 Score=27.59 Aligned_cols=50 Identities=16% Similarity=0.334 Sum_probs=37.1
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCCCCcc
Q psy8693 223 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCF 273 (282)
Q Consensus 223 ~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~-D~~~~Dpl~~~ 273 (282)
+.+.|-.--+.++-++++..++ .+.+.|.|+-+||+||+ |+|+---+.-|
T Consensus 84 iKVGLYg~kn~~eA~e~m~~vv-rAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl 134 (235)
T COG1891 84 IKVGLYGTKNEEEALEVMKNVV-RAVKDFDPSKKVVAAGYADAHRVGSVSPL 134 (235)
T ss_pred EEEeecccccHHHHHHHHHHHH-HHHhccCCCceEEeccccchhhccCcCcc
Confidence 6677776666677778887765 67789999999999997 77765444333
No 107
>cd07396 MPP_Nbla03831 Homo sapiens Nbla03831 and related proteins, metallophosphatase domain. Nbla03831 (also known as LOC56985) is an uncharacterized Homo sapiens protein with a domain that belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.
Probab=38.60 E-value=1.2e+02 Score=27.20 Aligned_cols=59 Identities=17% Similarity=0.178 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
..+++++.. +.+.+||+||+ +| |...+.. . -+.+.|..+.+.+.+.+.|+.++. |.-+.
T Consensus 27 ~~l~~~i~~-i~~~~~d~vv~-~G-Dlv~~~~---~-~~~~~~~~~~~~l~~l~~p~~~v~-GNHD~ 85 (267)
T cd07396 27 EKLEEAVEE-WNRESLDFVVQ-LG-DIIDGDN---A-RAEEALDAVLAILDRLKGPVHHVL-GNHDL 85 (267)
T ss_pred HHHHHHHHH-HHcCCCCEEEE-CC-CeecCCC---c-hHHHHHHHHHHHHHhcCCCEEEec-Ccccc
Confidence 566666644 45567998653 44 4332111 1 155778888888888888986655 44443
No 108
>PRK05862 enoyl-CoA hydratase; Provisional
Probab=38.12 E-value=1.3e+02 Score=26.86 Aligned_cols=79 Identities=16% Similarity=0.106 Sum_probs=38.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEe-------cCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQ-------CGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPF 109 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~-------~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~ 109 (282)
++|=|=...+=+.+.+..+.+.+..+-..-..-+||+. +|.|.-.--...........+..+...+..+.+|+
T Consensus 18 tlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~l~~~~kpv 97 (257)
T PRK05862 18 TLNRPKALNALNDALMDELGAALAAFDADEGIGAIVITGSEKAFAAGADIKEMADLSFMDVYKGDYITNWEKVARIRKPV 97 (257)
T ss_pred EEcCCcccCCCCHHHHHHHHHHHHHHhhCCCeeEEEEECCCCceECCcChHhHhccchhHHHHHHHHHHHHHHHhCCCCE
Confidence 44544334555677777777777654433333345543 33442210000000000122333445667788999
Q ss_pred EEEeCC
Q psy8693 110 LMVGGG 115 (282)
Q Consensus 110 ~~v~eG 115 (282)
|+...|
T Consensus 98 Iaav~G 103 (257)
T PRK05862 98 IAAVAG 103 (257)
T ss_pred EEEEcc
Confidence 877654
No 109
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.92 E-value=1.1e+02 Score=27.90 Aligned_cols=50 Identities=14% Similarity=0.335 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8693 54 IFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 54 ~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eG 115 (282)
-+++++...+++|+||++|+.+= - -..-|=...-+.+++.+.|++++.-|
T Consensus 46 ~~e~~~~~~~~~~~pdf~I~isP--------N----~~~PGP~~ARE~l~~~~iP~IvI~D~ 95 (276)
T PF01993_consen 46 DVEEVVTKMLKEWDPDFVIVISP--------N----AAAPGPTKAREMLSAKGIPCIVISDA 95 (276)
T ss_dssp HHHHHHHHHHHHH--SEEEEE-S-------------TTSHHHHHHHHHHHHSSS-EEEEEEG
T ss_pred HHHHHHHHHHHhhCCCEEEEECC--------C----CCCCCcHHHHHHHHhCCCCEEEEcCC
Confidence 34566667778999999998753 2 23344455666777889999998753
No 110
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=37.89 E-value=1.6e+02 Score=25.39 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh---cCCCEEEEeC
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR---YNLPFLMVGG 114 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~---~~~~~~~v~e 114 (282)
.+.+.++.++ ..+++.+||+||+ +| |.... ....+.|....+.++. .+.|+.++.|
T Consensus 19 ~~~~~~~~i~-~~~~~~~~d~iv~-~G-Dl~~~------~~~~~~~~~~~~~~~~l~~~~~p~~~~~G 77 (214)
T cd07399 19 VFDAQTDWIV-DNAEALNIAFVLH-LG-DIVDD------GDNDAEWEAADKAFARLDKAGIPYSVLAG 77 (214)
T ss_pred HHHHHHHHHH-HHHHHcCCCEEEE-CC-CccCC------CCCHHHHHHHHHHHHHHHHcCCcEEEECC
Confidence 3445555555 4566789999774 22 43322 2224555555555544 4577765443
No 111
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=37.58 E-value=28 Score=28.90 Aligned_cols=29 Identities=14% Similarity=0.233 Sum_probs=16.9
Q ss_pred CChhHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy8693 231 MDDESYESIFVPIISKVMETFQPSAVVLQ 259 (282)
Q Consensus 231 ~~d~~y~~~~~~~~~~~~~~f~P~~ivvs 259 (282)
..+........+.|...+++++|++|+|+
T Consensus 42 ~~~~~~~~~~~~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 42 ERDRERKEEDMERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp TT-SS-SHHHHHHHHHHHHHH--SEEEE-
T ss_pred ccchHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 34444444555566677889999999994
No 112
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=37.40 E-value=1.5e+02 Score=28.36 Aligned_cols=24 Identities=13% Similarity=0.265 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG 76 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G 76 (282)
.-+++.|..+.++++|++|+|.+.
T Consensus 73 ~~L~~aI~ei~~~~~P~~I~V~sT 96 (396)
T cd01979 73 AELDRVVTQIKRDRNPSVIFLIGS 96 (396)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECC
Confidence 456667778888999998887654
No 113
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=37.36 E-value=36 Score=28.01 Aligned_cols=18 Identities=22% Similarity=0.552 Sum_probs=12.5
Q ss_pred HHHHHcCCCEEEEecCCC
Q psy8693 246 KVMETFQPSAVVLQCGAD 263 (282)
Q Consensus 246 ~~~~~f~P~~ivvsaG~D 263 (282)
+.+.+.+||+|+++.|..
T Consensus 50 ~~l~~~~pd~Vii~~G~N 67 (189)
T cd01825 50 AQLAALPPDLVILSYGTN 67 (189)
T ss_pred HHHhhCCCCEEEEECCCc
Confidence 455667778888777753
No 114
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=37.18 E-value=1.3e+02 Score=26.43 Aligned_cols=58 Identities=9% Similarity=0.135 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 49 ESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 49 ~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
.+.++.+.+.+..++ .+||+||++ || +.. .-..+.+....+.+++...|+++| -|-..
T Consensus 25 ~~~~~~i~~~~~~~~--~~~D~viia-------GD-l~~-~~~~~~~~~~l~~l~~l~~~v~~V-~GNHD 82 (232)
T cd07393 25 KNHTEKIKENWDNVV--APEDIVLIP-------GD-ISW-AMKLEEAKLDLAWIDALPGTKVLL-KGNHD 82 (232)
T ss_pred HHHHHHHHHHHHhcC--CCCCEEEEc-------CC-Ccc-CCChHHHHHHHHHHHhCCCCeEEE-eCCcc
Confidence 456666666655544 289999975 33 111 112334445556666666676554 34433
No 115
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=37.03 E-value=47 Score=30.54 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHcCCCEEEE--ecCCCCCC
Q psy8693 55 FVPIISKVMETFQPSAVVL--QCGADSLT 81 (282)
Q Consensus 55 ~~~~l~~~~~~f~Pd~ivv--~~G~D~~~ 81 (282)
+.+.|..++++++||+||. ..|.|.|.
T Consensus 111 ~~~~l~~~Ir~~~PdvViT~~p~g~~~Hp 139 (284)
T TIGR03445 111 AAGALVAVIREVRPHVVVTYDPNGGYGHP 139 (284)
T ss_pred HHHHHHHHHHHhCCcEEEecCCCCCCCCc
Confidence 3345567899999998886 33444443
No 116
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=36.96 E-value=1.9e+02 Score=23.76 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=13.2
Q ss_pred HHHHHHHHHcCCCEEEEe
Q psy8693 57 PIISKVMETFQPSAVVLQ 74 (282)
Q Consensus 57 ~~l~~~~~~f~Pd~ivv~ 74 (282)
+.+..++++++||+||+.
T Consensus 28 ~~~~~~i~~~~pd~vv~~ 45 (156)
T cd08165 28 RSFQTSLWLLQPDVVFVL 45 (156)
T ss_pred HHHHHHHHhcCCCEEEEC
Confidence 355567789999988853
No 117
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=36.92 E-value=11 Score=27.06 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCC----CHHHHHHHHHHHHhcCC
Q psy8693 57 PIISKVMETFQPSAVVLQCGADSLTGDRLGCFNL----TVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 57 ~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~l----t~~~~~~~~~~~~~~~~ 107 (282)
++|..++++|+-++=|++++.|...+.|+|.|-+ +.+...++.+.+++.+.
T Consensus 17 piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~~~~v 71 (76)
T PF09383_consen 17 PIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLREQGV 71 (76)
T ss_dssp CHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHHHTTE
T ss_pred hHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHHHCCC
Confidence 5677788899999999999999999999998755 44556677777776543
No 118
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=36.72 E-value=66 Score=23.80 Aligned_cols=71 Identities=15% Similarity=0.273 Sum_probs=35.7
Q ss_pred EEeecCCC--CCChhHHHHHHHHHHHHHHHHcCC-CEEEEecCCCCCCCCcCCCCCCCHHHHHHH--HHHHHhcCCCEEE
Q psy8693 37 AVNIPLRD--GMDDESYESIFVPIISKVMETFQP-SAVVLQCGADSLTGDRLGCFNLTVRGHGKC--VEFVKRYNLPFLM 111 (282)
Q Consensus 37 ~~NiPl~~--g~~d~~y~~~~~~~l~~~~~~f~P-d~ivv~~G~D~~~~Dplg~~~lt~~~~~~~--~~~~~~~~~~~~~ 111 (282)
++|||++. ..........+...+......... +-||+-| ...........+ ...+++++.+-|.
T Consensus 33 a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~yc-----------~~~~~~~~~~~~~~~~~l~~~g~~~v~ 101 (113)
T PF00581_consen 33 AVNIPFPSLDPDEPSLSEDKLDEFLKELGKKIDKDKDIVFYC-----------SSGWRSGSAAAARVAWILKKLGFKNVY 101 (113)
T ss_dssp EEEEEGGGGSSSSSBCHHHHHHHHHHHHTHGSTTTSEEEEEE-----------SSSCHHHHHHHHHHHHHHHHTTTSSEE
T ss_pred Cccccccccccccccccccccccccccccccccccccceeee-----------ecccccchhHHHHHHHHHHHcCCCCEE
Confidence 58998853 223333444444444444443433 3345545 111122222222 2336666776789
Q ss_pred EeCCCCC
Q psy8693 112 VGGGGYT 118 (282)
Q Consensus 112 v~eGGY~ 118 (282)
++.|||.
T Consensus 102 ~l~GG~~ 108 (113)
T PF00581_consen 102 ILDGGFE 108 (113)
T ss_dssp EETTHHH
T ss_pred EecChHH
Confidence 9999986
No 119
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=36.63 E-value=2.4e+02 Score=27.16 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA 77 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~ 77 (282)
..+++.|..+.++|+|++|+|.+.+
T Consensus 70 ~~L~~aI~~i~~~~~P~~I~V~tTC 94 (407)
T TIGR01279 70 EELDRVVEQIKRDRNPSVIFLLSSC 94 (407)
T ss_pred HHHHHHHHHHHhhcCCCEEEEECCc
Confidence 3566777788889999999988763
No 120
>TIGR03282 methan_mark_13 putative methanogenesis marker 13 metalloprotein. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. This metal cluster-binding family is related to nitrogenase structural protein NifD and accessory protein NifE, among others.
Probab=36.15 E-value=1.8e+02 Score=27.77 Aligned_cols=54 Identities=17% Similarity=0.289 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC-CCC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGG-GGY 117 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~e-GGY 117 (282)
..+++.|..+.+.|+|++|+|..++ -...+| +...+.+.. +.+.|++.|=- ||+
T Consensus 61 eKL~eaI~ea~e~y~P~lI~VvTTCvseIIGD----------DIeaVvkE~-~~giPVI~V~t~GGf 116 (352)
T TIGR03282 61 EKLVKVIRYAEEKFKPELIGVVGTCASMIIGE----------DLKEAVDEA-DVDAEVIAVEVHAGF 116 (352)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCchhhccC----------CHHHHHHHh-CCCCCEEEEECCCCC
Confidence 3566777788899999988887663 233344 233333332 45789999965 888
No 121
>TIGR03445 mycothiol_MshB 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase. Members of this protein family are 1D-myo-inosityl-2-acetamido-2-deoxy-alpha-D-glucopyranoside deacetylase, the MshB protein of mycothiol biosynthesis in Mycobacterium tuberculosis and related species.
Probab=36.14 E-value=50 Score=30.35 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCCEEEE--ecCCCCCCC
Q psy8693 241 VPIISKVMETFQPSAVVL--QCGADSLTG 267 (282)
Q Consensus 241 ~~~~~~~~~~f~P~~ivv--saG~D~~~~ 267 (282)
.+.|..++++++||+||. ..|.|.|.+
T Consensus 112 ~~~l~~~Ir~~~PdvViT~~p~g~~~HpD 140 (284)
T TIGR03445 112 AGALVAVIREVRPHVVVTYDPNGGYGHPD 140 (284)
T ss_pred HHHHHHHHHHhCCcEEEecCCCCCCCCch
Confidence 355668889999998887 455566543
No 122
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=36.06 E-value=43 Score=30.01 Aligned_cols=46 Identities=24% Similarity=0.520 Sum_probs=33.9
Q ss_pred CCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 67 QPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 67 ~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
++|+||+. -|.-..++.|++.|+ ..+.+.+++++.+.++.| |||..
T Consensus 83 ~~Dliil~--Gd~Q~~~~~gqyel~----~~~Ld~a~e~g~~~IyTL-GGy~v 128 (258)
T COG2047 83 ERDLIILV--GDTQATSSEGQYELT----GKILDIAKEFGARMIYTL-GGYGV 128 (258)
T ss_pred CCcEEEEe--ccccccCcchhHHHH----HHHHHHHHHcCCcEEEEe-cCccc
Confidence 45777764 366667888887777 567778888999988877 56864
No 123
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=36.02 E-value=54 Score=29.17 Aligned_cols=62 Identities=2% Similarity=0.020 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGG 114 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~e 114 (282)
..++.+++.+ .+.++++.+.|++..|......+.--.+.-..+.+..+.+.+++.++ .+.+|
T Consensus 87 ~~~~~~~~~i-~~a~~lGa~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv--~l~iE 148 (275)
T PRK09856 87 ESLDMIKLAM-DMAKEMNAGYTLISAAHAGYLTPPNVIWGRLAENLSELCEYAENIGM--DLILE 148 (275)
T ss_pred HHHHHHHHHH-HHHHHhCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCC--EEEEe
Confidence 3445666655 57889999999998875433222111122223334444555555555 44555
No 124
>PRK06688 enoyl-CoA hydratase; Provisional
Probab=35.68 E-value=1.5e+02 Score=26.35 Aligned_cols=79 Identities=11% Similarity=0.052 Sum_probs=40.8
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEe-------cCCCCCCC-CcCCCCCCCHHHHHHHHHHHHhcCCC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQ-------CGADSLTG-DRLGCFNLTVRGHGKCVEFVKRYNLP 108 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~-------~G~D~~~~-Dplg~~~lt~~~~~~~~~~~~~~~~~ 108 (282)
++|=|=+..+=+.+.+..+.+.+..+.+.-...+||+. +|.|...- +....-.-....+..+.+.+..+.+|
T Consensus 19 ~lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~l~~~~kp 98 (259)
T PRK06688 19 TINRPDKKNALTAAMYQALADALEAAATDPAVRVVVLTGAGRAFSAGGDIKDFPKAPPKPPDELAPVNRFLRAIAALPKP 98 (259)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCccCccCHHHHhccCcchHHHHHHHHHHHHHHHcCCCC
Confidence 34444334455667777787777665444445667764 45553210 00000000012234456666778899
Q ss_pred EEEEeCC
Q psy8693 109 FLMVGGG 115 (282)
Q Consensus 109 ~~~v~eG 115 (282)
+|+...|
T Consensus 99 ~Iaav~G 105 (259)
T PRK06688 99 VVAAVNG 105 (259)
T ss_pred EEEEECC
Confidence 9887653
No 125
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=35.31 E-value=1.1e+02 Score=24.61 Aligned_cols=45 Identities=13% Similarity=0.222 Sum_probs=28.3
Q ss_pred HHHHHHHH-cCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q psy8693 58 IISKVMET-FQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMV 112 (282)
Q Consensus 58 ~l~~~~~~-f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v 112 (282)
++..+++. -+||+||+..|..-. .+.+.+.++.+.+.. +.+++++
T Consensus 40 ~l~~~~~~~~~~d~vvi~lGtNd~---------~~~~nl~~ii~~~~~-~~~ivlv 85 (150)
T cd01840 40 LIRQLKDSGKLRKTVVIGLGTNGP---------FTKDQLDELLDALGP-DRQVYLV 85 (150)
T ss_pred HHHHHHHcCCCCCeEEEEecCCCC---------CCHHHHHHHHHHcCC-CCEEEEE
Confidence 44444443 479999999997654 256777777666642 3455444
No 126
>COG1654 BirA Biotin operon repressor [Transcription]
Probab=35.21 E-value=29 Score=25.71 Aligned_cols=52 Identities=13% Similarity=0.265 Sum_probs=42.8
Q ss_pred cCCCCCCCCcCCC-CCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHH
Q psy8693 75 CGADSLTGDRLGC-FNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 75 ~G~D~~~~Dplg~-~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
++-+.+.++-++. +.+|.....+.++.+++.+..|..+-.=||.+......+
T Consensus 15 ~~~~~~SGe~La~~LgiSRtaVwK~Iq~Lr~~G~~I~s~~~kGY~L~~~~~ll 67 (79)
T COG1654 15 LTGNFVSGEKLAEELGISRTAVWKHIQQLREEGVDIESVRGKGYLLPQLPDLL 67 (79)
T ss_pred cCCCcccHHHHHHHHCccHHHHHHHHHHHHHhCCceEecCCCceeccCccccC
Confidence 5556677777774 789999999999999999999999988899877665544
No 127
>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A.
Probab=35.21 E-value=31 Score=28.63 Aligned_cols=30 Identities=13% Similarity=0.230 Sum_probs=17.6
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCCCEEEEe
Q psy8693 45 GMDDESYESIFVPIISKVMETFQPSAVVLQ 74 (282)
Q Consensus 45 g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~ 74 (282)
...|........+.|...+++++|++|+|+
T Consensus 41 ~~~~~~~~~~~~~~l~~~i~~~kP~vI~v~ 70 (150)
T PF14639_consen 41 NERDRERKEEDMERLKKFIEKHKPDVIAVG 70 (150)
T ss_dssp -TT-SS-SHHHHHHHHHHHHHH--SEEEE-
T ss_pred CccchHHHHHHHHHHHHHHHHcCCeEEEEc
Confidence 344555555555666678889999999993
No 128
>PF09601 DUF2459: Protein of unknown function (DUF2459); InterPro: IPR011727 This conserved hypothetical protein of unknown function is predominantly found in proteobacteria. Its function is unknown and its genome context is not well-conserved. It is found amid urease genes in at least one species.
Probab=35.14 E-value=1.6e+02 Score=24.99 Aligned_cols=75 Identities=20% Similarity=0.271 Sum_probs=46.8
Q ss_pred CCCEEEEecCCCCCC--CCcCCCCCCCHHHHHHHHHHHHhc-----CCCEEEEeCCCC-------------CcChhHHHH
Q psy8693 67 QPSAVVLQCGADSLT--GDRLGCFNLTVRGHGKCVEFVKRY-----NLPFLMVGGGGY-------------TIRNVSRCW 126 (282)
Q Consensus 67 ~Pd~ivv~~G~D~~~--~Dplg~~~lt~~~~~~~~~~~~~~-----~~~~~~v~eGGY-------------~~~~~~~~~ 126 (282)
.+.+|=| .+++... .+..-.+.||.+.|.++.+.|++. +++.+.+ +-|| +.-+++.-|
T Consensus 74 ~~svlhv-~~~~~~~~~~~~~~~i~ls~~~y~~L~~~I~~sf~~~~~g~~~~i-~~~y~~~d~Fy~A~G~Y~l~~TCNtW 151 (173)
T PF09601_consen 74 GPSVLHV-TYYSGPPEPGEDVRPIRLSEAQYRRLVAFIRASFQRDADGRPIPI-GPGYGPDDAFYEAKGRYSLFNTCNTW 151 (173)
T ss_pred CCCEEEE-EeecCCCCCCCceEEEEcCHHHHHHHHHHHHHHhccCCCCCeEEe-ccccCCCCeeEeeccceEeecCcHHH
Confidence 3434433 3444443 444667899999999999999863 4555554 4444 445566677
Q ss_pred HHHHHHHcCCCCcCCCC
Q psy8693 127 TYETSVALGSEIANELP 143 (282)
Q Consensus 127 ~~~~~~~~g~~~~~~~p 143 (282)
+.-.-..+|.++..-.|
T Consensus 152 ta~~L~aaG~~~~~wtp 168 (173)
T PF09601_consen 152 TARALKAAGLPAGLWTP 168 (173)
T ss_pred HHHHHHHcCCCcccccc
Confidence 77666667776654333
No 129
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=35.06 E-value=1.4e+02 Score=25.43 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=23.8
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
..+++.+||+|+|..| +++.=.++.+.....+.++++-.||-.+
T Consensus 94 ~~I~~s~~dil~VglG--------------~PkQE~~~~~~~~~~~~~v~~gvGg~fd 137 (177)
T TIGR00696 94 AKIARSGAGIVFVGLG--------------CPKQEIWMRNHRHLKPDAVMIGVGGSFD 137 (177)
T ss_pred HHHHHcCCCEEEEEcC--------------CcHhHHHHHHhHHhCCCcEEEEeceeee
Confidence 4556777777777777 3443344444333344445444445454
No 130
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.49 E-value=43 Score=28.96 Aligned_cols=87 Identities=17% Similarity=0.204 Sum_probs=51.6
Q ss_pred CCCCCCCCCCCCCCCC-CcccEEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHH
Q psy8693 17 QTWDLLHDKQDIGAGK-GKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRG 94 (282)
Q Consensus 17 ~~yPgtG~~~~~G~g~-g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~ 94 (282)
++=|||-+..-.|.-- |.- -+.+.|-.--+.++-+.++..++ .+++.|.|+-+||.+|+ |+|+-..+.-|.|
T Consensus 63 pYKPGT~slAalGaav~GaD-YiKVGLYg~kn~~eA~e~m~~vv-rAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~---- 136 (235)
T COG1891 63 PYKPGTASLAALGAAVAGAD-YIKVGLYGTKNEEEALEVMKNVV-RAVKDFDPSKKVVAAGYADAHRVGSVSPLLL---- 136 (235)
T ss_pred CCCCchHHHHHHHhHhhCCc-eEEEeecccccHHHHHHHHHHHH-HHHhccCCCceEEeccccchhhccCcCcccc----
Confidence 4557775544444321 222 25566655445556667777666 67899999999999995 6665443333333
Q ss_pred HHHHHHHHHhcCCCEEEEe
Q psy8693 95 HGKCVEFVKRYNLPFLMVG 113 (282)
Q Consensus 95 ~~~~~~~~~~~~~~~~~v~ 113 (282)
.+...+.+.-+++|=
T Consensus 137 ----P~vaa~ag~DvaMvD 151 (235)
T COG1891 137 ----PEVAAEAGADVAMVD 151 (235)
T ss_pred ----HHHHHhcCCCEEEEe
Confidence 344455555555553
No 131
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=34.03 E-value=1.6e+02 Score=27.15 Aligned_cols=47 Identities=21% Similarity=0.306 Sum_probs=38.2
Q ss_pred cCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHH
Q psy8693 75 CGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 75 ~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
+|+|...=| +++++...++.+.+++...++.+.-.||=|.+++++..
T Consensus 215 ~GaD~I~LD-----n~~~e~l~~av~~~~~~~~~i~leAsGGIt~~ni~~ya 261 (288)
T PRK07428 215 YGADIIMLD-----NMPVDLMQQAVQLIRQQNPRVKIEASGNITLETIRAVA 261 (288)
T ss_pred cCCCEEEEC-----CCCHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHH
Confidence 677777666 67899999999988876667788889999998887764
No 132
>PRK06563 enoyl-CoA hydratase; Provisional
Probab=33.36 E-value=2e+02 Score=25.56 Aligned_cols=36 Identities=11% Similarity=0.075 Sum_probs=20.3
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
+|=|=...+=+.+.+..+.+.+..+.+.-...+||+
T Consensus 14 lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vrvvvl 49 (255)
T PRK06563 14 LDRPAKRNAFDSAMLDDLALALGEYEADDELRVAVL 49 (255)
T ss_pred ECCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 444433445566777777777765544333345655
No 133
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=33.34 E-value=2e+02 Score=24.28 Aligned_cols=52 Identities=27% Similarity=0.411 Sum_probs=28.0
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Q psy8693 59 ISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGG 114 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~e 114 (282)
+..++++.+||+||+. | |...+..-.. -+.+.+.++.+.+.+.+.|+.++.|
T Consensus 33 ~~~~~~~~~~d~vv~~-G-Dl~~~~~~~~--~~~~~~~~~~~~l~~~~~p~~~~~G 84 (199)
T cd07383 33 IERVLDAEKPDLVVLT-G-DLITGENTND--NSTSALDKAVSPMIDRKIPWAATFG 84 (199)
T ss_pred HHHHHhhcCCCEEEEC-C-ccccCCCCch--HHHHHHHHHHHHHHHcCCCEEEECc
Confidence 4456678899987753 3 3332221110 0233444455555556889876653
No 134
>PRK05995 enoyl-CoA hydratase; Provisional
Probab=33.30 E-value=1.6e+02 Score=26.24 Aligned_cols=78 Identities=18% Similarity=0.068 Sum_probs=38.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCc---CC-CCCCC-HHHHHHHHHHHHh
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDR---LG-CFNLT-VRGHGKCVEFVKR 104 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dp---lg-~~~lt-~~~~~~~~~~~~~ 104 (282)
++|=|=...+=+.+.+..+.+.+..+-..-..-+||+ ++|.|...--. .. .-... ...+..+.+.+..
T Consensus 18 tlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 97 (262)
T PRK05995 18 TLNRPDVRNAFNETVIAELTAAFRALDADDSVRAVVLAGAGKAFCAGADLNWMKKMAGYSDDENRADARRLADMLRAIYR 97 (262)
T ss_pred EEcCcccccCCCHHHHHHHHHHHHHHhcCCCeEEEEEECCCCccccCcCHHHHhhhcccCchhhhhHHHHHHHHHHHHHc
Confidence 4455544455567777777777765433323334554 34444321000 00 00000 1123445566677
Q ss_pred cCCCEEEEeC
Q psy8693 105 YNLPFLMVGG 114 (282)
Q Consensus 105 ~~~~~~~v~e 114 (282)
+.+|+|...-
T Consensus 98 ~~kPvIaav~ 107 (262)
T PRK05995 98 CPKPVIARVH 107 (262)
T ss_pred CCCCEEEEEC
Confidence 8899986554
No 135
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=33.13 E-value=1.8e+02 Score=22.79 Aligned_cols=36 Identities=6% Similarity=-0.038 Sum_probs=25.1
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
..+++.+||+|++|+= ..-+.+....+.+.+++.+.
T Consensus 44 ~~a~~~~~d~V~iS~~-----------~~~~~~~~~~~~~~L~~~~~ 79 (122)
T cd02071 44 EAAIQEDVDVIGLSSL-----------SGGHMTLFPEVIELLRELGA 79 (122)
T ss_pred HHHHHcCCCEEEEccc-----------chhhHHHHHHHHHHHHhcCC
Confidence 4566889999999875 12345566777788887643
No 136
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=33.06 E-value=53 Score=27.83 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=39.2
Q ss_pred ecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHH
Q psy8693 74 QCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 74 ~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
.+|+|...=| +.|++...++.+.++..+.++.+...||=|++++++..
T Consensus 98 ~~g~d~I~lD-----~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya 145 (169)
T PF01729_consen 98 EAGADIIMLD-----NMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYA 145 (169)
T ss_dssp HTT-SEEEEE-----S-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHH
T ss_pred HhCCCEEEec-----CcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHH
Confidence 4677777777 55899999999999888888999999999999987754
No 137
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=32.93 E-value=51 Score=26.78 Aligned_cols=35 Identities=14% Similarity=0.225 Sum_probs=20.9
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693 223 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD 263 (282)
Q Consensus 223 ~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D 263 (282)
+|..++..+ ...+...+++ .+ .++||+|+++.|..
T Consensus 25 ~n~g~~G~~-~~~~~~~l~~----~~-~~~pd~vvl~~G~N 59 (169)
T cd01828 25 ANRGISGDT-TRGLLARLDE----DV-ALQPKAIFIMIGIN 59 (169)
T ss_pred EecCccccc-HHHHHHHHHH----Hh-ccCCCEEEEEeecc
Confidence 455554333 2334444433 33 67999999999963
No 138
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=32.77 E-value=71 Score=28.46 Aligned_cols=53 Identities=9% Similarity=0.123 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCEEEEecCCCC----CCCCcCCCCCCCHHHHHHHHHHHHhcCCC-EEE
Q psy8693 59 ISKVMETFQPSAVVLQCGADS----LTGDRLGCFNLTVRGHGKCVEFVKRYNLP-FLM 111 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~----~~~Dplg~~~lt~~~~~~~~~~~~~~~~~-~~~ 111 (282)
+..+++.++||+||-.|+.-. ...+|...+.....+-..+.+.+++.+.+ ++.
T Consensus 41 l~~~~~~~~~d~Vih~A~~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~ 98 (306)
T PLN02725 41 VEAFFAKEKPTYVILAAAKVGGIHANMTYPADFIRENLQIQTNVIDAAYRHGVKKLLF 98 (306)
T ss_pred HHHHHhccCCCEEEEeeeeecccchhhhCcHHHHHHHhHHHHHHHHHHHHcCCCeEEE
Confidence 445566789999999998632 23455443444445556677777777654 444
No 139
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=32.75 E-value=54 Score=30.17 Aligned_cols=20 Identities=15% Similarity=0.343 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHcCCCEEEE
Q psy8693 54 IFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 54 ~~~~~l~~~~~~f~Pd~ivv 73 (282)
.+...|..++++++||+||-
T Consensus 108 ~~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 108 EAAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHHcCCEEEEe
Confidence 34455667899999998775
No 140
>PRK15005 universal stress protein F; Provisional
Probab=32.72 E-value=1.2e+02 Score=23.56 Aligned_cols=13 Identities=0% Similarity=0.348 Sum_probs=7.2
Q ss_pred HHHHHcCCCEEEE
Q psy8693 61 KVMETFQPSAVVL 73 (282)
Q Consensus 61 ~~~~~f~Pd~ivv 73 (282)
..+++.++|+||+
T Consensus 101 ~~a~~~~~DLIV~ 113 (144)
T PRK15005 101 ELAKKIPADMIII 113 (144)
T ss_pred HHHHHcCCCEEEE
Confidence 3455556666665
No 141
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=32.56 E-value=1.5e+02 Score=25.40 Aligned_cols=47 Identities=23% Similarity=0.335 Sum_probs=31.1
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC--C-EEEEeCCCCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL--P-FLMVGGGGYT 118 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~--~-~~~v~eGGY~ 118 (282)
..+++.+||+|.+|+=.. -+.....++.+.+++.+. . .++++|..-+
T Consensus 127 ~~~~~~~~d~v~lS~~~~-----------~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~ 176 (201)
T cd02070 127 EAVKEHKPDILGLSALMT-----------TTMGGMKEVIEALKEAGLRDKVKVMVGGAPVN 176 (201)
T ss_pred HHHHHcCCCEEEEecccc-----------ccHHHHHHHHHHHHHCCCCcCCeEEEECCcCC
Confidence 456789999999998522 245567778888888743 2 3455555544
No 142
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=32.55 E-value=55 Score=28.64 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693 237 ESIFVPIISKVMETFQPSAVVLQCGAD 263 (282)
Q Consensus 237 ~~~~~~~~~~~~~~f~P~~ivvsaG~D 263 (282)
+.+|++.|...+++++||+|+ .|||-
T Consensus 64 r~~~d~~l~~~l~~~~~dlvv-LAGyM 89 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVV-LAGYM 89 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEE-EcchH
Confidence 466788888999999999876 46763
No 143
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=32.50 E-value=3e+02 Score=26.70 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=43.8
Q ss_pred hHHHHHHHHHH-------HHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCC
Q psy8693 49 ESYESIFVPII-------SKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR-YNLPFLMVGGGG 116 (282)
Q Consensus 49 ~~y~~~~~~~l-------~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~-~~~~~~~v~eGG 116 (282)
+.....++.+. ...++.|++|+|.+.+= .+||.+ .+=|++.|.++++.+.+ .+.|+++.+.|-
T Consensus 128 ~~i~~~~~dV~~dP~~wak~~V~~~~aD~Ialr~~----S~DP~~-~d~~~~e~a~~vk~V~~av~vPLIL~gsg~ 198 (389)
T TIGR00381 128 KPIRMHFEDVMEDPAEWARKCVKEFGADMVTIHLI----STDPKL-DDKSPSEAAKVLEDVLQAVDVPIVIGGSGN 198 (389)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHhCCCEEEEEec----CCCccc-cccCHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 44444554444 23348999999999872 356665 36789999999999865 589997765543
No 144
>PRK09076 enoyl-CoA hydratase; Provisional
Probab=32.47 E-value=1.5e+02 Score=26.47 Aligned_cols=77 Identities=17% Similarity=0.176 Sum_probs=37.7
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEec--------CCCCCC---CCcCCCCCCCHHHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQC--------GADSLT---GDRLGCFNLTVRGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~--------G~D~~~---~Dplg~~~lt~~~~~~~~~~~~~~ 105 (282)
++|=| +..+=+.+.+..+.+.+..+-+.-..-+||+.. |.|... .|....-.+ ...+..+.+.+..+
T Consensus 17 tlnrp-~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~-~~~~~~~~~~l~~~ 94 (258)
T PRK09076 17 TLNNP-PANTWTADSLQALKQLVLELNADKDVYALVITGDGEKFFSAGADLNLFADGDKAVAREM-ARRFGEAFEALSAF 94 (258)
T ss_pred EECCC-CcCCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCceEeCcCHHHHhhcChhhHHHH-HHHHHHHHHHHHhC
Confidence 45555 335556667777777776544333344555533 233211 000000000 12233455667778
Q ss_pred CCCEEEEeCC
Q psy8693 106 NLPFLMVGGG 115 (282)
Q Consensus 106 ~~~~~~v~eG 115 (282)
.+|+|+...|
T Consensus 95 ~kPvIAav~G 104 (258)
T PRK09076 95 RGVSIAAING 104 (258)
T ss_pred CCCEEEEECC
Confidence 8999876643
No 145
>cd01966 Nitrogenase_NifN_1 Nitrogenase_nifN1: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=32.28 E-value=2.5e+02 Score=27.21 Aligned_cols=70 Identities=10% Similarity=0.198 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC-CCCCCcCCCCCCCHHHHHHHHHHHHhc-----CCCEEEEeCCCCCcChhHHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGAD-SLTGDRLGCFNLTVRGHGKCVEFVKRY-----NLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D-~~~~Dplg~~~lt~~~~~~~~~~~~~~-----~~~~~~v~eGGY~~~~~~~~~ 126 (282)
+-+++.|..+.++|+|++|+|.+++= ...+| +...+.+.+++- +.|++.+--.||.-. ....|
T Consensus 67 ~~L~~~i~~~~~~~~p~~I~V~ttc~~eiIGd----------Di~~v~~~~~~~~p~~~~~~vi~v~t~gf~g~-~~~G~ 135 (417)
T cd01966 67 ENLEEALDTLAERAKPKVIGLLSTGLTETRGE----------DIAGALKQFRAEHPELADVPVVYVSTPDFEGS-LEDGW 135 (417)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccccccc----------CHHHHHHHHHhhccccCCCeEEEecCCCCCCc-HHHHH
Confidence 35556666778899999888776632 22233 234444444432 789999999999863 45555
Q ss_pred HHHHHHH
Q psy8693 127 TYETSVA 133 (282)
Q Consensus 127 ~~~~~~~ 133 (282)
.....++
T Consensus 136 ~~a~~al 142 (417)
T cd01966 136 AAAVEAI 142 (417)
T ss_pred HHHHHHH
Confidence 4444333
No 146
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=32.21 E-value=2.6e+02 Score=25.80 Aligned_cols=65 Identities=17% Similarity=0.001 Sum_probs=34.5
Q ss_pred HcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHH
Q psy8693 65 TFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYET 130 (282)
Q Consensus 65 ~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~ 130 (282)
.+=|.+|++---.|.-...++-++-.+++.|.++.+.+-=.+..+|++-.+ ++.-..+|+|-.+.
T Consensus 48 ~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~GI~~d~tVVvYdd-~~~~~A~ra~W~l~ 112 (285)
T COG2897 48 GHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGELGIRNDDTVVVYDD-GGGFFAARAWWLLR 112 (285)
T ss_pred ccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHcCCCCCCEEEEECC-CCCeehHHHHHHHH
Confidence 444555554444333333333567777777776655532223344444433 55556778775443
No 147
>PRK07938 enoyl-CoA hydratase; Provisional
Probab=32.21 E-value=1.4e+02 Score=26.62 Aligned_cols=77 Identities=17% Similarity=0.060 Sum_probs=36.9
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCC-CCCC--HHHHHHHHHHHHhcC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGC-FNLT--VRGHGKCVEFVKRYN 106 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~-~~lt--~~~~~~~~~~~~~~~ 106 (282)
++|=| +...=+.+.+..+.+.+..+.+.-..-+||+ ++|.|...--.... -.+. .+.+..+.+.+..+.
T Consensus 16 tlnrp-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~G~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 94 (249)
T PRK07938 16 TVDYP-PVNALPSAGWFALADAITAAGADPDTRVVVLRAEGRGFNAGVDIKELQATPGFTALIDANRGCFAAFRAVYECA 94 (249)
T ss_pred EECCC-CcccCCHHHHHHHHHHHHHhhcCCCeEEEEEECCCCceecCcCHHHHhhccchhHHHHHHHHHHHHHHHHHhCC
Confidence 45656 3455566777777777765433222234444 34455321000000 0000 112233455667788
Q ss_pred CCEEEEeC
Q psy8693 107 LPFLMVGG 114 (282)
Q Consensus 107 ~~~~~v~e 114 (282)
+|+|....
T Consensus 95 kPvIAav~ 102 (249)
T PRK07938 95 VPVIAAVH 102 (249)
T ss_pred CCEEEEEc
Confidence 99987654
No 148
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=32.17 E-value=2.1e+02 Score=21.18 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHH-HHhcCCCEEEE
Q psy8693 57 PIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEF-VKRYNLPFLMV 112 (282)
Q Consensus 57 ~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~-~~~~~~~~~~v 112 (282)
+.+...+++.++|+||+.+=- ..++.++- ++..++. ++.+.+|+++|
T Consensus 92 ~~i~~~~~~~~~dliv~G~~~----~~~~~~~~-----~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 92 DAIIEFAEEHNADLIVMGSRG----RSGLERLL-----FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHHHHTTCSEEEEESSS----TTSTTTSS-----SHHHHHHHHHHTSSEEEEE
T ss_pred hhhhhccccccceeEEEeccC----CCCccCCC-----cCCHHHHHHHcCCCCEEEe
Confidence 344567889999999987542 23344332 3444444 45578898876
No 149
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=31.98 E-value=1.5e+02 Score=28.03 Aligned_cols=56 Identities=16% Similarity=0.390 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKR-YNLPFLMVGGGGYT 118 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~-~~~~~~~v~eGGY~ 118 (282)
+-+++.|..+.++++|++|+|...+ ....+ .++..+.+.+.+ .+.|++.+--.||.
T Consensus 60 ~kL~~~i~~~~~~~~P~~i~v~~sC~~~iIG----------dD~~~v~~~~~~~~~~~vi~v~~~gf~ 117 (398)
T PF00148_consen 60 EKLREAIKEIAEKYKPKAIFVVTSCVPEIIG----------DDIEAVARELQEEYGIPVIPVHTPGFS 117 (398)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEEE-HHHHHTT----------TTHHHHHHHHHHHHSSEEEEEE--TTS
T ss_pred hhHHHHHHHHHhcCCCcEEEEECCCCHHHhC----------CCHHHHHHHhhcccCCcEEEEECCCcc
Confidence 3556667778889999999886542 22223 244556666664 47799999999993
No 150
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=31.96 E-value=58 Score=29.53 Aligned_cols=53 Identities=6% Similarity=0.035 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCEEEEecCCCC---CCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEE
Q psy8693 59 ISKVMETFQPSAVVLQCGADS---LTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLM 111 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~---~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~ 111 (282)
+.++++..+||+||-.++.-. ...+|.-.+.+...+-..+.+.+++.+.+++.
T Consensus 46 ~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~~~~~~~N~~~~~~l~~aa~~~g~~~v~ 101 (299)
T PRK09987 46 VAETVRKIRPDVIVNAAAHTAVDKAESEPEFAQLLNATSVEAIAKAANEVGAWVVH 101 (299)
T ss_pred HHHHHHhcCCCEEEECCccCCcchhhcCHHHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence 344566789999998887643 22344333344455566677777777777554
No 151
>PRK07327 enoyl-CoA hydratase; Provisional
Probab=31.77 E-value=1.2e+02 Score=27.36 Aligned_cols=79 Identities=18% Similarity=0.115 Sum_probs=36.8
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCC-CcCCCCCCC---HHHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTG-DRLGCFNLT---VRGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~-Dplg~~~lt---~~~~~~~~~~~~~~ 105 (282)
++|=|=...+=+.+.+..+.+++..+-..-...+||+ ++|.|...- +........ .+.+..+...+..+
T Consensus 26 tlnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 105 (268)
T PRK07327 26 VLNGPGALNAADARMHRELADIWRDVDRDPDVRVVLIRGEGKAFSAGGDLALVEEMADDFEVRARVWREARDLVYNVINC 105 (268)
T ss_pred EEcCCCccCCCCHHHHHHHHHHHHHhhhCCCceEEEEECCCCCcccccCHHHHhhccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 3444433344466777777777765443333345554 444553210 000000000 01122345556677
Q ss_pred CCCEEEEeCC
Q psy8693 106 NLPFLMVGGG 115 (282)
Q Consensus 106 ~~~~~~v~eG 115 (282)
.+|+|+...|
T Consensus 106 ~kPvIAav~G 115 (268)
T PRK07327 106 DKPIVSAIHG 115 (268)
T ss_pred CCCEEEEEcC
Confidence 8999876643
No 152
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=31.72 E-value=55 Score=27.47 Aligned_cols=19 Identities=16% Similarity=0.209 Sum_probs=16.6
Q ss_pred HHHHHHHcCCCEEEEecCC
Q psy8693 244 ISKVMETFQPSAVVLQCGA 262 (282)
Q Consensus 244 ~~~~~~~f~P~~ivvsaG~ 262 (282)
+...+++.+||+|+|..|.
T Consensus 91 i~~~I~~~~pdiv~vglG~ 109 (171)
T cd06533 91 IIERINASGADILFVGLGA 109 (171)
T ss_pred HHHHHHHcCCCEEEEECCC
Confidence 5677789999999999985
No 153
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=31.63 E-value=52 Score=26.89 Aligned_cols=48 Identities=10% Similarity=0.092 Sum_probs=26.8
Q ss_pred HHHcCCCEEEEecCCCCCCCCcCCCCCCCH----HHHHHHHHHHHh--cCCCEEEE
Q psy8693 63 METFQPSAVVLQCGADSLTGDRLGCFNLTV----RGHGKCVEFVKR--YNLPFLMV 112 (282)
Q Consensus 63 ~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~----~~~~~~~~~~~~--~~~~~~~v 112 (282)
+...+||+|++++|..=...... -..++ +.+..+++.+++ -+.+++++
T Consensus 57 ~~~~~~d~v~l~~G~ND~~~~~~--~~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~ 110 (191)
T cd01834 57 VLPAKPDVVSIMFGINDSFRGFD--DPVGLEKFKTNLRRLIDRLKNKESAPRIVLV 110 (191)
T ss_pred cccCCCCEEEEEeecchHhhccc--ccccHHHHHHHHHHHHHHHHcccCCCcEEEE
Confidence 44688999999999643322110 12344 445556666652 24455544
No 154
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=31.62 E-value=1.5e+02 Score=26.04 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=33.3
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCC-EEEEeCCCCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLP-FLMVGGGGYT 118 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~-~~~v~eGGY~ 118 (282)
..+++.+||+|.+|+= +.-+.....++.+.+++.+.. .++++|.+++
T Consensus 133 ~~~~~~~~~~V~lS~~-----------~~~~~~~~~~~i~~L~~~~~~~~i~vGG~~~~ 180 (213)
T cd02069 133 EAAKEHKADIIGLSGL-----------LVPSLDEMVEVAEEMNRRGIKIPLLIGGAATS 180 (213)
T ss_pred HHHHHcCCCEEEEccc-----------hhccHHHHHHHHHHHHhcCCCCeEEEEChhcC
Confidence 5667899999999874 335677778888888876433 4455665666
No 155
>TIGR02280 PaaB1 phenylacetate degradation probable enoyl-CoA hydratase paaB. This family of proteins are found within apparent operons for the degradation of phenylacetic acid. These proteins contain the enoyl-CoA hydratase domain as detected by pfam00378. This activity is consistent with current hypotheses for the degradation pathway which involve the ligation of phenylacetate with coenzyme A (paaF), hydroxylation (paaGHIJK), ring-opening (paaN) and degradation of the resulting fatty acid-like compound to a Krebs cycle intermediate (paaABCDE).
Probab=30.77 E-value=1.3e+02 Score=26.70 Aligned_cols=77 Identities=17% Similarity=0.125 Sum_probs=37.6
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcC--CCCCCC---HHHHHHHHHHHHhc
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRL--GCFNLT---VRGHGKCVEFVKRY 105 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dpl--g~~~lt---~~~~~~~~~~~~~~ 105 (282)
+|-|=...+=+.+.+..+.+.+..+-+.- .-+||+ ++|.|...-... ..-... ...+..+.+.+..+
T Consensus 14 lnrp~~~Nal~~~~~~~l~~~l~~~~~d~-v~~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 92 (256)
T TIGR02280 14 LNRPDKLNSFTAEMHLELREALERVERDD-ARALMLTGAGRGFCAGQDLSERNPTPGGAPDLGRTIETFYNPLVRRLRAL 92 (256)
T ss_pred ecCcccccCCCHHHHHHHHHHHHHHhcCC-cEEEEEECCCCCcccCcCHHHHhhccccchhHHHHHHHHHHHHHHHHHhC
Confidence 34333334445666777777776544332 455655 555554321000 000000 01123345567778
Q ss_pred CCCEEEEeCC
Q psy8693 106 NLPFLMVGGG 115 (282)
Q Consensus 106 ~~~~~~v~eG 115 (282)
.+|+|+...|
T Consensus 93 ~kPvIaav~G 102 (256)
T TIGR02280 93 PLPVVCAVNG 102 (256)
T ss_pred CCCEEEEECC
Confidence 8999987754
No 156
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=30.51 E-value=1.2e+02 Score=26.75 Aligned_cols=49 Identities=14% Similarity=0.211 Sum_probs=34.8
Q ss_pred EEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCCcC
Q psy8693 71 VVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRY-NLPFLMVGGGGYTIR 120 (282)
Q Consensus 71 ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~-~~~~~~v~eGGY~~~ 120 (282)
||+=.|--.+.++. +.-.+..+...++.+.+++. +.++++|.|||....
T Consensus 2 iVIKiGGs~l~~~~-~~~~~~~~~l~~l~~~l~~l~g~~vvlVhGgg~~~~ 51 (252)
T cd04241 2 IILKLGGSVITDKD-RPETIREENLERIARELAEAIDEKLVLVHGGGSFGH 51 (252)
T ss_pred EEEEEeceEEEcCC-CCCccCHHHHHHHHHHHHhccCCCEEEEECCCcccC
Confidence 56666665555432 22347778888889998888 888999999987543
No 157
>PRK07110 polyketide biosynthesis enoyl-CoA hydratase; Validated
Probab=30.24 E-value=2.3e+02 Score=25.13 Aligned_cols=68 Identities=9% Similarity=0.077 Sum_probs=35.0
Q ss_pred CCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCCCCCCHHHH--HHHHHHHHhcCCCEEEEeCC
Q psy8693 45 GMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGCFNLTVRGH--GKCVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 45 g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~~~lt~~~~--~~~~~~~~~~~~~~~~v~eG 115 (282)
..=+.+.+..+.+.+..+.+.-..-+||+ ++|.|... +....-....+ ..+.+.+..+.+|+|+...|
T Consensus 27 Nal~~~~~~~L~~~l~~~~~d~~vr~vvl~g~g~~F~aG~Dl~~---~~~~~~~~~~~~~~~~~~~l~~~~kPvIaav~G 103 (249)
T PRK07110 27 NAFSDELCDQLHEAFDTIAQDPRYKVVILTGYPNYFATGGTQEG---LLSLQTGKGTFTEANLYSLALNCPIPVIAAMQG 103 (249)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCceEEEEECCCCCeeCCcChHH---HhhccchhhhHhhHHHHHHHHcCCCCEEEEecC
Confidence 44456777778777765544333345655 34444321 00000001111 24556677789999977643
No 158
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=30.18 E-value=1.3e+02 Score=26.93 Aligned_cols=51 Identities=12% Similarity=0.234 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCC-CHHHHHH----HHHHHHhcCCCEEEEeC
Q psy8693 55 FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNL-TVRGHGK----CVEFVKRYNLPFLMVGG 114 (282)
Q Consensus 55 ~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~l-t~~~~~~----~~~~~~~~~~~~~~v~e 114 (282)
+...+..++++++|++||+ |++..+.. ....+++ +.+.+++.+..++++-+
T Consensus 119 l~~~l~~~i~~~~~~~vVI---------DSls~l~~~~~~~~r~~~~~L~~~lk~~~~t~ll~~e 174 (259)
T TIGR03878 119 LLATLAYAIKEYKVKNTVI---------DSITGLYEAKEMMAREIVRQLFNFMKKWYQTALFVSQ 174 (259)
T ss_pred HHHHHHHHHHhhCCCEEEE---------cCchHhcccchHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 3344556778999998885 33332211 2222333 44556777887777754
No 159
>PF09967 DUF2201: VWA-like domain (DUF2201); InterPro: IPR018698 This family of various hypothetical bacterial proteins has no known function.
Probab=29.90 E-value=1.1e+02 Score=24.26 Aligned_cols=51 Identities=16% Similarity=0.339 Sum_probs=34.6
Q ss_pred CChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCCCc-----ccccccccCC
Q psy8693 231 MDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGC-----FNLTVRDCSG 282 (282)
Q Consensus 231 ~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D~~~~Dpl~~-----~~lt~~~~~~ 282 (282)
++++++.+ |-..+..+++++..++.|++|=...+....+.. ..+...|-||
T Consensus 11 is~~~l~~-fl~ev~~i~~~~~~~v~vi~~D~~v~~~~~~~~~~~~~~~~~~~GgGG 66 (126)
T PF09967_consen 11 ISDEELRR-FLSEVAGILRRFPAEVHVIQFDAEVQDVQVFRSLEDELRDIKLKGGGG 66 (126)
T ss_pred CCHHHHHH-HHHHHHHHHHhCCCCEEEEEECCEeeeeeEEecccccccccccCCCCC
Confidence 45555544 445566899999999999998877777766655 3444455554
No 160
>TIGR00024 SbcD_rel_arch putative phosphoesterase, SbcD/Mre11-related. Members of this uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11. SbcD is a subunit of the SbcCD nuclease of E. coli that can cleave DNA hairpins to unblock stalled DNA replication. All members of this family are archaeal.
Probab=29.70 E-value=2.5e+02 Score=24.78 Aligned_cols=66 Identities=14% Similarity=0.110 Sum_probs=37.9
Q ss_pred ecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCc
Q psy8693 40 IPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 40 iPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
+++|.... .++++++. .++++++||.||+. | |=.-.+. +...+..+.+++++...+ +.+..|-++.
T Consensus 36 i~~P~~~~----~~~l~rl~-~li~~~~~d~vIi~-G------Dl~h~~~-~~~~~~~~~~~l~~~~~~-v~~V~GNHD~ 101 (225)
T TIGR00024 36 VMVPGFQF----REIIERAL-SIADKYGIEALIIN-G------DLKHEFK-KGLEWRFIREFIEVTFRD-LILIRGNHDA 101 (225)
T ss_pred CcCChhHH----HHHHHHHH-HHHhhcCCCEEEEc-C------ccccccC-ChHHHHHHHHHHHhcCCc-EEEECCCCCC
Confidence 44555442 34555544 67789999998864 3 3221111 115566667777766655 4556777763
No 161
>PRK08258 enoyl-CoA hydratase; Provisional
Probab=29.68 E-value=1.6e+02 Score=26.64 Aligned_cols=79 Identities=18% Similarity=0.179 Sum_probs=36.6
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCC-CcCCCCCCC-HHHH----HHHHHHHH
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTG-DRLGCFNLT-VRGH----GKCVEFVK 103 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~-Dplg~~~lt-~~~~----~~~~~~~~ 103 (282)
++|-|=...+=+.+.+..+.+.+..+-+.=...+||+ ++|.|...- +........ ...+ ..+.+.+.
T Consensus 31 tlnrp~~~Nal~~~~~~eL~~~l~~~~~d~~vr~vVltg~g~~FsaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 110 (277)
T PRK08258 31 TLNRPERKNPLTFESYAELRDLFRELVYADDVKAVVLTGAGGNFCSGGDVHEIIGPLTKMDMPELLAFTRMTGDLVKAMR 110 (277)
T ss_pred EeCCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEeCCCCCcccccCHHHHhccccccChhHHHHHHHHHHHHHHHHH
Confidence 4454433344455566667666655433222334555 455554321 000000000 0111 23455666
Q ss_pred hcCCCEEEEeCC
Q psy8693 104 RYNLPFLMVGGG 115 (282)
Q Consensus 104 ~~~~~~~~v~eG 115 (282)
.+.+|+|....|
T Consensus 111 ~~~kPvIAaV~G 122 (277)
T PRK08258 111 ACPQPIIAAVDG 122 (277)
T ss_pred hCCCCEEEEECC
Confidence 788999876654
No 162
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=29.56 E-value=1e+02 Score=21.75 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCCEEEEeCCCCC
Q psy8693 96 GKCVEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 96 ~~~~~~~~~~~~~~~~v~eGGY~ 118 (282)
..+...+++.+.+-+.++.||+.
T Consensus 70 ~~~~~~l~~~G~~~v~~l~GG~~ 92 (100)
T smart00450 70 AKAAWLLRELGFKNVYLLDGGYK 92 (100)
T ss_pred HHHHHHHHHcCCCceEEecCCHH
Confidence 45566677777776889999996
No 163
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=29.43 E-value=64 Score=27.50 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=16.9
Q ss_pred HHHHHHHHcCCCEEEEecCC
Q psy8693 243 IISKVMETFQPSAVVLQCGA 262 (282)
Q Consensus 243 ~~~~~~~~f~P~~ivvsaG~ 262 (282)
.+...+++.+||+|+|..|.
T Consensus 91 ~i~~~I~~s~~dil~VglG~ 110 (177)
T TIGR00696 91 AALAKIARSGAGIVFVGLGC 110 (177)
T ss_pred HHHHHHHHcCCCEEEEEcCC
Confidence 35677789999999999995
No 164
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=29.37 E-value=1.5e+02 Score=23.98 Aligned_cols=36 Identities=8% Similarity=-0.102 Sum_probs=25.9
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
.++.+.+||+|.+|+= + .-+.....++.+.+++.+.
T Consensus 48 ~~a~~~~~d~V~lS~~--------~---~~~~~~~~~~~~~L~~~~~ 83 (137)
T PRK02261 48 DAAIETDADAILVSSL--------Y---GHGEIDCRGLREKCIEAGL 83 (137)
T ss_pred HHHHHcCCCEEEEcCc--------c---ccCHHHHHHHHHHHHhcCC
Confidence 5667899999999874 1 1356666777888887633
No 165
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=29.19 E-value=86 Score=25.79 Aligned_cols=33 Identities=9% Similarity=0.125 Sum_probs=19.6
Q ss_pred cCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 41 PLRDGMDDESYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 41 Pl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
..++.....+=+..+.+.|..++++|+||.+++
T Consensus 32 ~t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vai 64 (149)
T PF02075_consen 32 KTSSKDSLPERLKEIYEELEELIEEYNPDEVAI 64 (149)
T ss_dssp E---S--HHHHHHHHHHHHHHHHHHH--SEEEE
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 334444444555566677889999999999998
No 166
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=29.12 E-value=2.6e+02 Score=26.20 Aligned_cols=63 Identities=13% Similarity=0.279 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcChhHHHHH
Q psy8693 54 IFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTIRNVSRCWT 127 (282)
Q Consensus 54 ~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~~~~~~~~~ 127 (282)
-+.+.+..++++++|++|+|..++ ..+.+| ++..+.+.+. ..+.|++.+-..||. .+....+.
T Consensus 67 ~l~~~i~~~~~~~~p~~i~v~~tc~~~liGd----------Di~~v~~~~~~~~~~~vv~~~~~gf~-~~~~~G~~ 131 (399)
T cd00316 67 KLLEAIINELKRYKPKVIFVYTTCTTELIGD----------DIEAVAKEASKEIGIPVVPASTPGFR-GSQSAGYD 131 (399)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCchhhhhcc----------CHHHHHHHHHHhhCCceEEeeCCCCc-ccHHHHHH
Confidence 344455567789999988876652 333333 3445555554 358899999999998 44444443
No 167
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=28.94 E-value=3e+02 Score=26.77 Aligned_cols=61 Identities=10% Similarity=-0.011 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCC-CCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGADS-LTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRC 125 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D~-~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~ 125 (282)
+.+++.|..+.++++|++|+|.+++=+ ..+| +...+.+. ..+.||+.|---||...+-...
T Consensus 73 ~~L~~~i~~~~~~~~P~~I~V~tTC~se~IGd----------Di~~~~~~--~~~~pVi~v~tpgF~~~s~~~G 134 (422)
T TIGR02015 73 EDVRCSVHKLADPASYDAIVVINLCVPTASGV----------PLELLPKR--INGVRVLGIDVPGFGVPTHAEA 134 (422)
T ss_pred HHHHHHHHHHhhcCCCCEEEEECCCcHHHhcC----------cHHHHHHh--cCCCCeEEEeCCCCCCchHHHH
Confidence 567777777788999999999987322 1122 11111121 1467999999999955443333
No 168
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=28.91 E-value=84 Score=25.75 Aligned_cols=14 Identities=29% Similarity=0.634 Sum_probs=11.7
Q ss_pred HcCCCEEEEecCCC
Q psy8693 250 TFQPSAVVLQCGAD 263 (282)
Q Consensus 250 ~f~P~~ivvsaG~D 263 (282)
.++||+|||+.|..
T Consensus 65 ~~~~d~vii~~G~N 78 (185)
T cd01832 65 ALRPDLVTLLAGGN 78 (185)
T ss_pred hcCCCEEEEecccc
Confidence 46999999999973
No 169
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=28.78 E-value=2.6e+02 Score=27.07 Aligned_cols=25 Identities=8% Similarity=0.123 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEecCC
Q psy8693 53 SIFVPIISKVMETF-QPSAVVLQCGA 77 (282)
Q Consensus 53 ~~~~~~l~~~~~~f-~Pd~ivv~~G~ 77 (282)
..+.+.+..+++++ +|++|+|.+.+
T Consensus 82 ~~L~~ai~ei~~~~~~P~~I~V~tTC 107 (427)
T PRK02842 82 EELDRVVEELIKRRPNISVLFLVGSC 107 (427)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCC
Confidence 45566666656666 89999988764
No 170
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=28.67 E-value=1.4e+02 Score=22.57 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=33.9
Q ss_pred HHHHHHHcCCCEEEEecCCCCC---------------CCCcCCCCCCCHHHHHHHHHHHHhcCCCE
Q psy8693 59 ISKVMETFQPSAVVLQCGADSL---------------TGDRLGCFNLTVRGHGKCVEFVKRYNLPF 109 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~---------------~~Dplg~~~lt~~~~~~~~~~~~~~~~~~ 109 (282)
+..+++.-++|+|+++..-+.| ..-|++ +|.+...++.+.+++.+.++
T Consensus 54 ~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~EKP~~---~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 54 LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLVEKPLA---LTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEEESSSS---SSHHHHHHHHHHHHHHTSCE
T ss_pred HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEEEcCCc---CCHHHHHHHHHHHHHhCCEE
Confidence 4456667799999998655444 445654 58888888888888777653
No 171
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=28.66 E-value=2.3e+02 Score=24.31 Aligned_cols=62 Identities=13% Similarity=0.289 Sum_probs=42.4
Q ss_pred HHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCC--CHHHHHH-HHHHHHhcCCCEEEEeCCCCCc
Q psy8693 58 IISKVMETFQPSAVVLQCGADSLTGDRLGCFNL--TVRGHGK-CVEFVKRYNLPFLMVGGGGYTI 119 (282)
Q Consensus 58 ~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~l--t~~~~~~-~~~~~~~~~~~~~~v~eGGY~~ 119 (282)
.+.+.+.+++-|++++-.--=....|-+-.+.- ..+.|.. |-++|.+.+.|.+.+-+-||-.
T Consensus 105 ~~~~~i~~~r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l~~~L~~~~~~~v~i~~~~y~e 169 (187)
T COG3172 105 FLQALIAEYRFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLLEQMLEENNIPFVVIEGEDYLE 169 (187)
T ss_pred hHHHHHhhcccceEEEcCCCCceeCCCccccccHhHHHHHHHHHHHHHHHhCCcEEEEcCCCHHH
Confidence 567788999999999987765555565544433 4445544 6667777888887655559953
No 172
>PRK08290 enoyl-CoA hydratase; Provisional
Probab=28.64 E-value=2.4e+02 Score=25.70 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=23.8
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSL 80 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~ 80 (282)
++|=|=...+=+.+.+..+.+.+..+.+.-.-.+||+ ++|.|..
T Consensus 18 tlnrP~~~Nal~~~~~~eL~~~l~~~~~d~~vrvvVltg~G~~FcaG~Dl~ 68 (288)
T PRK08290 18 TLNRPEARNAQNRQMLYELDAAFRRAEADDAVRVIVLAGAGKHFSAGHDLG 68 (288)
T ss_pred EecCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCccccCCCcc
Confidence 3444433344466677777777765443323334555 5667754
No 173
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=28.44 E-value=1.3e+02 Score=25.38 Aligned_cols=25 Identities=16% Similarity=0.341 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEe
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQ 74 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~ 74 (282)
.=+..+.+-|..++++|+||.+++=
T Consensus 44 ~Rl~~I~~~l~~~i~~~~Pd~vaiE 68 (164)
T PRK00039 44 ERLKQIYDGLSELIDEYQPDEVAIE 68 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEe
Confidence 3344444567789999999999863
No 174
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=28.16 E-value=58 Score=27.02 Aligned_cols=34 Identities=12% Similarity=0.160 Sum_probs=22.5
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC
Q psy8693 223 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA 262 (282)
Q Consensus 223 ~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~ 262 (282)
.|+..+ |.+..+++..+++ +..++||+|+|..|.
T Consensus 44 ~n~g~~-G~t~~~~~~~l~~-----~~~~~pd~Vii~~G~ 77 (191)
T cd01836 44 RLFAKT-GATSADLLRQLAP-----LPETRFDVAVISIGV 77 (191)
T ss_pred EEEecC-CcCHHHHHHHHHh-----cccCCCCEEEEEecc
Confidence 555543 3334556665544 446899999999998
No 175
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=28.04 E-value=74 Score=29.28 Aligned_cols=19 Identities=16% Similarity=0.408 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCCEEEE
Q psy8693 240 FVPIISKVMETFQPSAVVL 258 (282)
Q Consensus 240 ~~~~~~~~~~~f~P~~ivv 258 (282)
..+.|..++++++||+|+.
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3355668889999998875
No 176
>cd01973 Nitrogenase_VFe_beta_like Nitrogenase_VFe_beta -like: Nitrogenase VFe protein, beta subunit like. This group contains proteins similar to the beta subunits of the VFe protein of the vanadium-dependent (V-) nitrogenase. Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V-nitrogenase there is a molybdenum (Mo)-dependent nitrogenase and an iron only (Fe-) nitrogenase. The Mo-nitrogenase is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe p
Probab=28.00 E-value=3e+02 Score=27.04 Aligned_cols=57 Identities=5% Similarity=0.093 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHH--------hcCCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETF-QPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVK--------RYNLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f-~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~--------~~~~~~~~v~eGGY~~ 119 (282)
+-+++.|..+.++| +|++|+|.+++ =...+|-+ ..+++.+. +.+.|++.|-.+||.-
T Consensus 72 ~~L~~~I~~~~~~~~~p~~I~V~tTC~~eiIGDDi----------~~vv~~~~~~~~~e~~~~~~~vi~v~tpgF~G 138 (454)
T cd01973 72 KRVEEGVLVLARRYPDLRVIPIITTCSTEIIGDDI----------EGVIRKLNEALKEEFPDREVHLIPVHTPSFKG 138 (454)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEECCchHhhhccCH----------HHHHHHHHhhhhhccCCCCCeEEEeeCCCcCC
Confidence 35566677888899 69988877764 33344422 22222221 1256777777777764
No 177
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=27.99 E-value=2.6e+02 Score=27.12 Aligned_cols=57 Identities=9% Similarity=0.239 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHHhc-----CCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVKRY-----NLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~~~-----~~~~~~v~eGGY~~ 119 (282)
.-+++.|..+.++++|++|+|... .....+|- +..+.+.+++. +.|++.+--.||.-
T Consensus 71 ~~L~~ai~~~~~~~~p~~I~v~ttC~~~iiGdD----------i~~v~~~~~~~~~~~~~~~vi~v~tpgf~g 133 (435)
T cd01974 71 NNLIDGLKNAYAVYKPDMIAVSTTCMAEVIGDD----------LNAFIKNAKNKGSIPADFPVPFANTPSFVG 133 (435)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCchHhhhhcc----------HHHHHHHHHHhccCCCCCeEEEecCCCCcc
Confidence 456666777888999998766554 34444442 23334433322 46777777777764
No 178
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=27.89 E-value=1.7e+02 Score=21.88 Aligned_cols=38 Identities=16% Similarity=0.303 Sum_probs=27.8
Q ss_pred CCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8693 67 QPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGG 116 (282)
Q Consensus 67 ~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGG 116 (282)
++|+||+..+ .++-.....+-+.+++.++|++.+=..|
T Consensus 48 ~aD~VIv~t~------------~vsH~~~~~vk~~akk~~ip~~~~~~~~ 85 (97)
T PF10087_consen 48 KADLVIVFTD------------YVSHNAMWKVKKAAKKYGIPIIYSRSRG 85 (97)
T ss_pred CCCEEEEEeC------------CcChHHHHHHHHHHHHcCCcEEEECCCC
Confidence 5677777766 3566667777788888999999885444
No 179
>COG1409 Icc Predicted phosphohydrolases [General function prediction only]
Probab=27.80 E-value=2.1e+02 Score=24.95 Aligned_cols=52 Identities=23% Similarity=0.287 Sum_probs=33.3
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHH--hcCCCEEEEeCCCCCcChh
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVK--RYNLPFLMVGGGGYTIRNV 122 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~--~~~~~~~~v~eGGY~~~~~ 122 (282)
+.++.-+||+||++ | | |... =....|.++.+++. +...|+ .+.-|..+....
T Consensus 27 ~~i~~~~~D~~v~t-G------D-l~~~-~~~~~~~~~~~~l~~~~~~~~~-~~vpGNHD~~~~ 80 (301)
T COG1409 27 AAIEQLKPDLLVVT-G------D-LTND-GEPEEYRRLKELLARLELPAPV-IVVPGNHDARVV 80 (301)
T ss_pred HHHhcCCCCEEEEc-c------C-cCCC-CCHHHHHHHHHHHhhccCCCce-EeeCCCCcCCch
Confidence 44568899999875 3 3 3332 25788888888888 445555 455666665443
No 180
>PRK08140 enoyl-CoA hydratase; Provisional
Probab=27.62 E-value=1.8e+02 Score=25.92 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=35.9
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEE-------ecCCCCCCC--CcCCC-CCC--C-HHHHHHHHHHH
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVL-------QCGADSLTG--DRLGC-FNL--T-VRGHGKCVEFV 102 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv-------~~G~D~~~~--Dplg~-~~l--t-~~~~~~~~~~~ 102 (282)
+|=|=...+=+.+.+..+.+.+..+ + +|+ +||+ ++|.|...- .+.+. ... . ...+..+.+.+
T Consensus 19 lnrp~~~Nal~~~~~~~l~~~~~~~-~--d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 95 (262)
T PRK08140 19 LNRPDKLNSFTREMHRELREALDQV-E--DDGARALLLTGAGRGFCAGQDLADRDVTPGGAMPDLGESIETFYNPLVRRL 95 (262)
T ss_pred ecCCcccCCCCHHHHHHHHHHHHHh-c--CCCceEEEEECCCCCcccCcChHHHhccccccchhhHHHHHHHHHHHHHHH
Confidence 4444333444556666666666543 2 454 4554 556664321 11000 000 0 11123345566
Q ss_pred HhcCCCEEEEeCC
Q psy8693 103 KRYNLPFLMVGGG 115 (282)
Q Consensus 103 ~~~~~~~~~v~eG 115 (282)
..+.+|+|....|
T Consensus 96 ~~~~kPvIaav~G 108 (262)
T PRK08140 96 RALPLPVIAAVNG 108 (262)
T ss_pred HhCCCCEEEEECC
Confidence 6788999877654
No 181
>PRK07468 enoyl-CoA hydratase; Provisional
Probab=27.42 E-value=1.6e+02 Score=26.23 Aligned_cols=77 Identities=13% Similarity=0.116 Sum_probs=38.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEE-------ecCCCCCCC-CcCC--CC-CCC-HHHHHHHHHHH
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVL-------QCGADSLTG-DRLG--CF-NLT-VRGHGKCVEFV 102 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv-------~~G~D~~~~-Dplg--~~-~lt-~~~~~~~~~~~ 102 (282)
++|=|=...+=+.+.+..+.+.+..+-+ +|+ +||+ ++|.|...- +... .- ... ...+..+.+.+
T Consensus 19 tlnrp~~~Nal~~~~~~~l~~~l~~~~~--d~~v~~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (262)
T PRK07468 19 TLNRPEKHNALSARMIAELTTAARRLAA--DAAVRVVVLTGAGKSFCAGGDLGWMRAQMTADRATRIEEARRLAMMLKAL 96 (262)
T ss_pred EEcCcccccCCCHHHHHHHHHHHHHHhc--CCCeEEEEEECCCCcccCCcCHHHHHhhcccchhhHHHHHHHHHHHHHHH
Confidence 4555544455566777777777754432 454 4544 445554320 0000 00 000 11123345566
Q ss_pred HhcCCCEEEEeCC
Q psy8693 103 KRYNLPFLMVGGG 115 (282)
Q Consensus 103 ~~~~~~~~~v~eG 115 (282)
..+.+|+|...-|
T Consensus 97 ~~~~kPvIaav~G 109 (262)
T PRK07468 97 NDLPKPLIGRIQG 109 (262)
T ss_pred HcCCCCEEEEECC
Confidence 7788999977643
No 182
>PRK06023 enoyl-CoA hydratase; Provisional
Probab=27.33 E-value=2.5e+02 Score=24.86 Aligned_cols=78 Identities=12% Similarity=0.028 Sum_probs=40.7
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCC-Cc-CCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTG-DR-LGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~-Dp-lg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
++|=|=...+=+.+.+..+.+.+..+-+.-..-+||+ ++|.|...- ++ .....+ ...+..+.+.+..+.+
T Consensus 20 tlnrp~~~Nal~~~~~~~L~~~l~~~~~d~~vr~vVl~g~g~~FcaG~Dl~~~~~~~~~~~~~-~~~~~~~~~~l~~~~k 98 (251)
T PRK06023 20 RFNRPEKKNAITRAMYATMAKALKAADADDAIRAHVFLGTEGCFSAGNDMQDFLAAAMGGTSF-GSEILDFLIALAEAEK 98 (251)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHhcCCCceEEEEECCCCCeecCcCHHHHhhccccchhh-HHHHHHHHHHHHhCCC
Confidence 4555544445566777777777765433322334554 556664210 00 011111 1223455667777899
Q ss_pred CEEEEeCC
Q psy8693 108 PFLMVGGG 115 (282)
Q Consensus 108 ~~~~v~eG 115 (282)
|+|+...|
T Consensus 99 PvIAav~G 106 (251)
T PRK06023 99 PIVSGVDG 106 (251)
T ss_pred CEEEEeCC
Confidence 99977665
No 183
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=27.33 E-value=1.5e+02 Score=25.19 Aligned_cols=52 Identities=23% Similarity=0.345 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCC
Q psy8693 48 DESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLP 108 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~ 108 (282)
|+.-...+.+.|...+....-++||++-|.|-..+|-||-+ ++.+|++.+.+
T Consensus 5 ~~~a~~~l~~~L~~~~~~~~~~iv~lCIGTDRstGDsLGPL---------VGt~L~~~~~~ 56 (163)
T PF06866_consen 5 DKNAPEKLANFLYSLIPKHNREIVFLCIGTDRSTGDSLGPL---------VGTKLKEMGFP 56 (163)
T ss_pred CHHHHHHHHHHHHHHHhhcCCCEEEEEECCCCCccccccch---------hhHHHHhcCCC
Confidence 44444455555555565558899999999999999999864 35667776554
No 184
>PRK07659 enoyl-CoA hydratase; Provisional
Probab=27.11 E-value=1.7e+02 Score=26.18 Aligned_cols=78 Identities=17% Similarity=0.055 Sum_probs=37.4
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCC---CCCCCHHHHHHHHHHHHhcC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLG---CFNLTVRGHGKCVEFVKRYN 106 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg---~~~lt~~~~~~~~~~~~~~~ 106 (282)
++|=|=....=+.+.+..+.+.+..+ +.-..-+||+ ++|.|...--... .+.-....+..+...+..+.
T Consensus 20 tlnrp~~~Nal~~~~~~~l~~~l~~~-~d~~vrvvvl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 98 (260)
T PRK07659 20 MLNRPEALNALDEPMLKELLQALKEV-AESSAHIVVLRGNGRGFSAGGDIKMMLSSNDESKFDGVMNTISEIVVTLYTMP 98 (260)
T ss_pred EeCCcccccCCCHHHHHHHHHHHHHh-cCCCeeEEEEECCCCCcccccCHHHHhhccCchhHHHHHHHHHHHHHHHHhCC
Confidence 45555444555677777777777665 4323334554 4445543200000 00000011223344455678
Q ss_pred CCEEEEeCC
Q psy8693 107 LPFLMVGGG 115 (282)
Q Consensus 107 ~~~~~v~eG 115 (282)
+|+|....|
T Consensus 99 ~pvIaav~G 107 (260)
T PRK07659 99 KLTISAIHG 107 (260)
T ss_pred CCEEEEecC
Confidence 898877644
No 185
>COG1024 CaiD Enoyl-CoA hydratase/carnithine racemase [Lipid metabolism]
Probab=27.01 E-value=1.7e+02 Score=25.93 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=41.0
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCC-EEEE------ecCCCCCCC----CcCCCCCCCHHHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPS-AVVL------QCGADSLTG----DRLGCFNLTVRGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd-~ivv------~~G~D~~~~----Dplg~~~lt~~~~~~~~~~~~~~ 105 (282)
++|-|-...+=+.+.+..+.+.+..+-..=.-- +|+- |+|.|...- +... ..-..+...++.+.++.+
T Consensus 19 tlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvltg~g~~FsaG~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~ 97 (257)
T COG1024 19 TLNRPEKLNALNLEMLDELAEALDEAEADPDVRVVVLTGAGKAFSAGADLKELLSPEDGNA-AENLMQPGQDLLRALADL 97 (257)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHhhCCCeEEEEEECCCCceecccCHHHHhcccchhH-HHHHHhHHHHHHHHHHhC
Confidence 466666555556667777777775544431111 3332 334443321 1000 001112223367778888
Q ss_pred CCCEEEE-----eCCCCC
Q psy8693 106 NLPFLMV-----GGGGYT 118 (282)
Q Consensus 106 ~~~~~~v-----~eGGY~ 118 (282)
.+|+|.. +|||..
T Consensus 98 ~kPvIAav~G~a~GgG~e 115 (257)
T COG1024 98 PKPVIAAVNGYALGGGLE 115 (257)
T ss_pred CCCEEEEEcceEeechhh
Confidence 9999864 466765
No 186
>PRK06072 enoyl-CoA hydratase; Provisional
Probab=26.91 E-value=1.5e+02 Score=26.21 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=36.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEEe-------cCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVLQ-------CGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv~-------~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
++|=|=...+=+.+.+..+.+.+..+-. +|+ +||+. +|.|...-.+...-. ..+.+..+.+.+..+.+
T Consensus 14 tlnrp~~~Nal~~~~~~~l~~a~~~~~~--d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~-~~~~~~~~~~~l~~~~k 90 (248)
T PRK06072 14 TMSRPDKLNALNLEMRNEFISKLKQINA--DPKIRVVIVTGEGRAFCVGADLSEFAPDFAID-LRETFYPIIREIRFSDK 90 (248)
T ss_pred EECCcccccCCCHHHHHHHHHHHHHHhc--CCCeeEEEEECCCCCcccCcCHHHHhhhhHHH-HHHHHHHHHHHHHhCCC
Confidence 3444433445566666777666654332 454 45553 333322100000000 01223445556667788
Q ss_pred CEEEEeCC
Q psy8693 108 PFLMVGGG 115 (282)
Q Consensus 108 ~~~~v~eG 115 (282)
|+|....|
T Consensus 91 PvIaav~G 98 (248)
T PRK06072 91 IYISAING 98 (248)
T ss_pred CEEEEECC
Confidence 99877654
No 187
>PRK12362 germination protease; Provisional
Probab=26.91 E-value=2.8e+02 Score=26.15 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=35.6
Q ss_pred CCCCCCcccEEeecCCCCCChhHHHHHHHHHHHHHHHHc-----CCCEEEEecCCCCCCCCcCCC
Q psy8693 28 IGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETF-----QPSAVVLQCGADSLTGDRLGC 87 (282)
Q Consensus 28 ~G~g~g~g~~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f-----~Pd~ivv~~G~D~~~~Dplg~ 87 (282)
.|...|.+-++-.|--... |.++...+.+.+...++.+ +..++||..|-|-...|-||-
T Consensus 55 mgKp~G~YiTiE~p~l~~~-d~~~~~~i~~~la~~L~~ll~~~~~~~iLVvGLGN~~vTpDaLGP 118 (318)
T PRK12362 55 MGKPKGTYITIEAPELREY-DRELHEEVSKILAKELKKLINLDKEMTVLVVGLGNWNVTPDALGP 118 (318)
T ss_pred hCCCCccEEEEecCCcccc-CHHHHHHHHHHHHHHHHHHhCCCCCCcEEEEEcCCCCcCccccch
Confidence 3445555555555533332 4555555555555555544 346899998888888887774
No 188
>PLN02267 enoyl-CoA hydratase/isomerase family protein
Probab=26.89 E-value=1.7e+02 Score=25.82 Aligned_cols=18 Identities=17% Similarity=0.161 Sum_probs=12.9
Q ss_pred HHHHHHhcCCCEEEEeCC
Q psy8693 98 CVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 98 ~~~~~~~~~~~~~~v~eG 115 (282)
+...+..+.+|+|....|
T Consensus 86 ~~~~l~~~~kPvIAaV~G 103 (239)
T PLN02267 86 LVADLISLPMPTIAAVTG 103 (239)
T ss_pred HHHHHhcCCCCEEEEECC
Confidence 445566678999988765
No 189
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=26.74 E-value=77 Score=26.60 Aligned_cols=19 Identities=26% Similarity=0.357 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCEEEEecCC
Q psy8693 244 ISKVMETFQPSAVVLQCGA 262 (282)
Q Consensus 244 ~~~~~~~f~P~~ivvsaG~ 262 (282)
+...+++.+||+|+|..|.
T Consensus 93 i~~~I~~~~pdiv~vglG~ 111 (172)
T PF03808_consen 93 IINRINASGPDIVFVGLGA 111 (172)
T ss_pred HHHHHHHcCCCEEEEECCC
Confidence 4466688999999999985
No 190
>TIGR02932 vnfK_nitrog V-containing nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, VnfK, represents the beta subunit of the vanadium (V)-containing alternative nitrogenase. It is homologous to NifK and AnfK, of the molybdenum-containing and the iron (Fe)-only types, respectively.
Probab=26.71 E-value=3.1e+02 Score=26.95 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHc-CCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHH-----h---cCCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETF-QPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVK-----R---YNLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f-~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~-----~---~~~~~~~v~eGGY~~ 119 (282)
.-+++.|..+.++| +|++|+|.+++ =...+|- ...+++.++ + .+.|++.|-.+||.-
T Consensus 75 ~kL~~aI~~~~~~~~~p~~I~V~ttC~~eiIGDD----------i~~v~~~~~~~~~~e~~~~~~~vv~v~tpgF~g 141 (457)
T TIGR02932 75 KRIEEGVLTLARRYPNLRVIPIITTCSTETIGDD----------IEGSIRKVNRALKKEFPDRKIKLVPVHTPSFKG 141 (457)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEECCchHHhhcCC----------HHHHHHHHHhhhhhhcCCCCCeEEEeeCCCCcC
Confidence 35566677788899 69988886653 2333332 222232221 1 257888888888875
No 191
>TIGR03210 badI 2-ketocyclohexanecarboxyl-CoA hydrolase. Members of this protein family are 2-ketocyclohexanecarboxyl-CoA hydrolase, a ring-opening enzyme that acts in catabolism of molecules such as benzoyl-CoA and cyclohexane carboxylate. It converts -ketocyclohexanecarboxyl-CoA to pimelyl-CoA. It is not sensitive to oxygen.
Probab=26.52 E-value=3e+02 Score=24.50 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCEEEEeCC
Q psy8693 96 GKCVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 96 ~~~~~~~~~~~~~~~~v~eG 115 (282)
..+.+.+..+.+|+|+...|
T Consensus 84 ~~~~~~l~~~~kPvIaav~G 103 (256)
T TIGR03210 84 EELHSAIRDVPKPVIARVQG 103 (256)
T ss_pred HHHHHHHHhCCCCEEEEECC
Confidence 34556677788999866543
No 192
>PRK00942 acetylglutamate kinase; Provisional
Probab=26.41 E-value=2.7e+02 Score=25.18 Aligned_cols=61 Identities=15% Similarity=0.370 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8693 50 SYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGY 117 (282)
Q Consensus 50 ~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY 117 (282)
+....|++.. |-+.+|+=..+|+=.|-.++...- ..+...+....+.+.+.++|+|.+||-
T Consensus 6 ~~~~~~r~~~-~yi~~~~~~~iViK~GGs~l~~~~------~~~~l~~~i~~l~~~g~~vVlVhGgg~ 66 (283)
T PRK00942 6 EKAEVLSEAL-PYIQRFMGKTIVIKYGGNAMTDEE------LKEAFARDIVLLKQVGINPVVVHGGGP 66 (283)
T ss_pred HHHHHHHHHH-HHHHHHcCCeEEEEEChHHhcCcc------hHHHHHHHHHHHHHCCCCEEEEeCChH
Confidence 4456677765 788999988999999977775541 133344444555677778888888865
No 193
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=26.29 E-value=2.2e+02 Score=25.82 Aligned_cols=50 Identities=12% Similarity=0.216 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eG 115 (282)
+++++.+.+++++ .-|+||+|.| .|+.+++....+-+.+++..-+.+..|
T Consensus 71 ~Av~e~~~~~L~~-g~d~iV~SVG------------ALad~~l~erl~~lak~~~~rv~~pSG 120 (255)
T COG1712 71 EAVREYVPKILKA-GIDVIVMSVG------------ALADEGLRERLRELAKCGGARVYLPSG 120 (255)
T ss_pred HHHHHHhHHHHhc-CCCEEEEech------------hccChHHHHHHHHHHhcCCcEEEecCc
Confidence 5777778777754 5689999998 367788888888888887666666655
No 194
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=26.18 E-value=2e+02 Score=21.13 Aligned_cols=20 Identities=15% Similarity=0.205 Sum_probs=13.6
Q ss_pred HHHHHhcCCCEEEEeCCCCC
Q psy8693 99 VEFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 99 ~~~~~~~~~~~~~v~eGGY~ 118 (282)
.+.+++.+-.-+..+.||++
T Consensus 78 ~~~L~~~G~~~v~~l~GG~~ 97 (101)
T cd01518 78 SAYLKERGFKNVYQLKGGIL 97 (101)
T ss_pred HHHHHHhCCcceeeechhHH
Confidence 44566666555678899986
No 195
>TIGR02931 anfK_nitrog Fe-only nitrogenase, beta subunit. Nitrogenase is the enzyme of biological nitrogen fixation. The most wide-spread and most efficient nitrogenase contains a molybdenum cofactor. This protein family, AnfK, represents the beta subunit of the iron-only alternative nitrogenase. It is homologous to NifK and VnfK, of the molybdenum-containing and the vanadium (V)-containing types, respectively.
Probab=26.18 E-value=2.8e+02 Score=27.25 Aligned_cols=63 Identities=5% Similarity=0.179 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHc-CCCEE-EEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh---------cCCCEEEEeCCCCCcChh
Q psy8693 54 IFVPIISKVMETF-QPSAV-VLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR---------YNLPFLMVGGGGYTIRNV 122 (282)
Q Consensus 54 ~~~~~l~~~~~~f-~Pd~i-vv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~---------~~~~~~~v~eGGY~~~~~ 122 (282)
-+++.|..+.++| +|++| |++++.....+|-+ ..+++.+++ .+.|++.|-.+||.- +.
T Consensus 79 ~L~~ai~~~~~~~~~p~~i~v~ttc~~eiiGDDi----------~~v~~~~~~~~~~~~~p~~~~~ii~v~tpgF~g-s~ 147 (461)
T TIGR02931 79 RVEEAVDVLLTRYPDVKVVPIITTCSTEIIGDDV----------DGLISKLNEELLKEKFPDREVHLIPIHTPSFVG-SM 147 (461)
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCchHHhhhcCH----------HHHHHHHHhhhcccccCCCCCeEEEeeCCCCCC-cH
Confidence 3566777888899 59987 55666666666643 222333321 145677777777764 33
Q ss_pred HHHHH
Q psy8693 123 SRCWT 127 (282)
Q Consensus 123 ~~~~~ 127 (282)
...+.
T Consensus 148 ~~Gy~ 152 (461)
T TIGR02931 148 ITGYD 152 (461)
T ss_pred HHHHH
Confidence 44443
No 196
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=26.17 E-value=2.3e+02 Score=25.48 Aligned_cols=16 Identities=13% Similarity=0.194 Sum_probs=11.2
Q ss_pred HHHHHcCCCEEEEecC
Q psy8693 61 KVMETFQPSAVVLQCG 76 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G 76 (282)
..+.+.+||+|+|..|
T Consensus 151 ~~I~~s~~dil~VglG 166 (243)
T PRK03692 151 ERIHASGAKIVTVAMG 166 (243)
T ss_pred HHHHhcCCCEEEEECC
Confidence 4456777777777777
No 197
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=26.00 E-value=2.4e+02 Score=22.98 Aligned_cols=36 Identities=8% Similarity=-0.019 Sum_probs=25.9
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL 107 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~ 107 (282)
..+.+.+||+|.+|+= +.-+...+.++.+.+++.+.
T Consensus 46 ~aa~~~~adiVglS~l-----------~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 46 KAAIETKADAILVSSL-----------YGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred HHHHHcCCCEEEEecc-----------cccCHHHHHHHHHHHHHCCC
Confidence 3456789999999862 12356677888888888754
No 198
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=25.98 E-value=1.2e+02 Score=24.53 Aligned_cols=17 Identities=24% Similarity=0.645 Sum_probs=11.9
Q ss_pred HHHHcCCCEEEEecCCC
Q psy8693 247 VMETFQPSAVVLQCGAD 263 (282)
Q Consensus 247 ~~~~f~P~~ivvsaG~D 263 (282)
.+..++||+|+|+.|..
T Consensus 59 ~~~~~~pd~v~i~~G~N 75 (177)
T cd01822 59 LLAQHKPDLVILELGGN 75 (177)
T ss_pred HHHhcCCCEEEEeccCc
Confidence 33457888888888863
No 199
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=25.96 E-value=2.9e+02 Score=26.98 Aligned_cols=57 Identities=19% Similarity=0.355 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCcC
Q psy8693 54 IFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 54 ~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~~ 120 (282)
.+.+.|..++++++|++|+|.+. ...+.+|. +..+.+.+. +.+.|++.|-..||.-.
T Consensus 108 kL~~~I~e~~~~~~P~~I~V~ttC~~~lIGdD----------i~~v~~e~~~~~~~~vi~v~t~gf~g~ 166 (456)
T TIGR01283 108 KLFHAIREIVERYHPPAVFVYSTCVPGLIGDD----------LEAVCKAAAEKTGIPVIPVDSEGFYGS 166 (456)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCChHHHhcCC----------HHHHHHHHHHHhCCCEEEEECCCCccc
Confidence 55566667788999998766554 34445553 334444443 25889999999998553
No 200
>PRK08139 enoyl-CoA hydratase; Validated
Probab=25.73 E-value=2e+02 Score=25.82 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=38.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEE-------ecCCCCCCCCcCCCCC-CC--HHHHHHHHHHHHh
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVL-------QCGADSLTGDRLGCFN-LT--VRGHGKCVEFVKR 104 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv-------~~G~D~~~~Dplg~~~-lt--~~~~~~~~~~~~~ 104 (282)
++|=|=...+=+.+.+..+.+.+..+-. +|+ +||+ ++|.|.-.--...... .. .+.+..+...+..
T Consensus 25 tlnrp~~~Nal~~~~~~~l~~~l~~~~~--d~~vr~vVltg~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 102 (266)
T PRK08139 25 TLNRPQAFNALSEAMLAALQAALDAIAA--DPSVRVVVLAAAGKAFCAGHDLKEMRAARGLAYFRALFARCSRVMQAIVA 102 (266)
T ss_pred EeCCcccccCCCHHHHHHHHHHHHHHhc--CCCeeEEEEecCCCcceeccCHHHHhcccchhHHHHHHHHHHHHHHHHHh
Confidence 4555544455567777777777765433 454 4543 4445432100000000 00 0112234555667
Q ss_pred cCCCEEEEeCC
Q psy8693 105 YNLPFLMVGGG 115 (282)
Q Consensus 105 ~~~~~~~v~eG 115 (282)
+.+|+|....|
T Consensus 103 ~~kPvIAav~G 113 (266)
T PRK08139 103 LPQPVIARVHG 113 (266)
T ss_pred CCCCEEEEECc
Confidence 88999877654
No 201
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=25.63 E-value=1.1e+02 Score=25.13 Aligned_cols=32 Identities=9% Similarity=0.135 Sum_probs=19.6
Q ss_pred CCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 227 LRDGMDDESYESIFVPIISKVMETFQPSAVVL 258 (282)
Q Consensus 227 l~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivv 258 (282)
.++..+..+=+..+.+.|..++++|+||.+++
T Consensus 33 t~~~~~~~~Rl~~I~~~l~~li~~~~P~~vai 64 (149)
T PF02075_consen 33 TSSKDSLPERLKEIYEELEELIEEYNPDEVAI 64 (149)
T ss_dssp ---S--HHHHHHHHHHHHHHHHHHH--SEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhhCCCEEEe
Confidence 34444455556666777889999999999987
No 202
>PRK03580 carnitinyl-CoA dehydratase; Provisional
Probab=25.29 E-value=3e+02 Score=24.54 Aligned_cols=76 Identities=9% Similarity=0.087 Sum_probs=38.8
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEec--------CCCCCC---CCcCCCCCCCHHHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQC--------GADSLT---GDRLGCFNLTVRGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~--------G~D~~~---~Dplg~~~lt~~~~~~~~~~~~~~ 105 (282)
++|=| +..+=+.+.+..+.+.+..+-..-...+||+.. |.|... .+... ...... ...+.+.+..+
T Consensus 17 tlnrp-~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl~g~g~~~F~aG~Dl~~~~~~~~~~-~~~~~~-~~~~~~~l~~~ 93 (261)
T PRK03580 17 TLDRP-KANAIDAKTSFAMGEVFLNFRDDPELRVAIITGAGEKFFSAGWDLKAAAEGEAPD-ADFGPG-GFAGLTEIFDL 93 (261)
T ss_pred EECCc-cccCCCHHHHHHHHHHHHHHHhCCCcEEEEEEeCCCCceecccCHHHHhccCcch-hhhhhh-hhHHHHHHHhC
Confidence 56667 556667788888888886654332334555543 333321 11100 000011 12234556778
Q ss_pred CCCEEEEeCC
Q psy8693 106 NLPFLMVGGG 115 (282)
Q Consensus 106 ~~~~~~v~eG 115 (282)
.+|+|....|
T Consensus 94 ~kPvIaav~G 103 (261)
T PRK03580 94 DKPVIAAVNG 103 (261)
T ss_pred CCCEEEEECC
Confidence 8998876543
No 203
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=25.19 E-value=79 Score=29.96 Aligned_cols=46 Identities=22% Similarity=0.406 Sum_probs=36.4
Q ss_pred CCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh-----cCCCEEEEeCCCCC
Q psy8693 67 QPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR-----YNLPFLMVGGGGYT 118 (282)
Q Consensus 67 ~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~-----~~~~~~~v~eGGY~ 118 (282)
-|-++|+-|-|-+|.+-.| ...++.|-+++.. +-.|-|.+|+|||.
T Consensus 303 hp~aLifHCEfSshRaP~L------A~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk 353 (427)
T COG5105 303 HPRALIFHCEFSSHRAPRL------AQHLRNMDRMKNPDHYPLLTYPEVYILEGGYK 353 (427)
T ss_pred CceeEEEEeecccccchhH------HHHHhhhhhhcCcccCcccccceEEEecCcHH
Confidence 3899999999999998765 3456777777665 24588999999996
No 204
>KOG1529|consensus
Probab=25.17 E-value=3e+02 Score=25.49 Aligned_cols=19 Identities=11% Similarity=0.195 Sum_probs=14.1
Q ss_pred HHHHhcCCCEEEEeCCCCC
Q psy8693 100 EFVKRYNLPFLMVGGGGYT 118 (282)
Q Consensus 100 ~~~~~~~~~~~~v~eGGY~ 118 (282)
-+.+-++-..|.||-||++
T Consensus 107 W~fr~fGh~~VslL~GG~~ 125 (286)
T KOG1529|consen 107 WTFRVFGHTKVSLLNGGFR 125 (286)
T ss_pred HHHHHhCccEEEEecCcHH
Confidence 3456667788888888887
No 205
>PRK05864 enoyl-CoA hydratase; Provisional
Probab=25.10 E-value=2.5e+02 Score=25.35 Aligned_cols=77 Identities=19% Similarity=0.190 Sum_probs=38.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEE-------ecCCCCCCCC--c-CCCC-CCC-----HHHHHHH
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVL-------QCGADSLTGD--R-LGCF-NLT-----VRGHGKC 98 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv-------~~G~D~~~~D--p-lg~~-~lt-----~~~~~~~ 98 (282)
++|=|=...+=+.+.+..+.+.+..+.+ +|+ +||+ ++|.|...-. + .... ... .+.+..+
T Consensus 24 tlnrp~~~Nal~~~~~~~L~~~l~~~~~--d~~vrvvVl~g~g~~FcaG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (276)
T PRK05864 24 TLNRPERMNSMAFDVMVPLKEALAEVSY--DNSVRVVVLTGAGRGFSSGADHKSAGVVPHVEGLTRPTYALRSMELLDDV 101 (276)
T ss_pred EecCCccccCCCHHHHHHHHHHHHHHhc--CCCceEEEEECCCCCeecCcchhhhhcccccccccchhHHHHHHHHHHHH
Confidence 3454433345566777777777765433 454 4554 4556654210 0 0000 000 1122334
Q ss_pred HHHHHhcCCCEEEEeCC
Q psy8693 99 VEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 99 ~~~~~~~~~~~~~v~eG 115 (282)
.+.+..+.+|+|....|
T Consensus 102 ~~~l~~~~kPvIaav~G 118 (276)
T PRK05864 102 ILALRRLHQPVIAAVNG 118 (276)
T ss_pred HHHHHhCCCCEEEEECC
Confidence 55566788999866543
No 206
>PRK05674 gamma-carboxygeranoyl-CoA hydratase; Validated
Probab=24.79 E-value=2.7e+02 Score=24.94 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=38.0
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE-------ecCCCCCCCCcCCC--C--CC-CHHHHHHHHHHHHh
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL-------QCGADSLTGDRLGC--F--NL-TVRGHGKCVEFVKR 104 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv-------~~G~D~~~~Dplg~--~--~l-t~~~~~~~~~~~~~ 104 (282)
++|=|=...+=+.+.+..+.+.+..+...-..-+||+ ++|.|...-..... . .. ....+..+...+..
T Consensus 20 tlnrp~~~Nal~~~~~~el~~al~~~~~d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 99 (265)
T PRK05674 20 WLSRADKNNAFNAQMIRELILALDQVQSDASLRFLLLRGRGRHFSAGADLAWMQQSADLDYNTNLDDARELAELMYNLYR 99 (265)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHhcCCCeeEEEEECCCCCcccCcCHHHHhhcccccchhhhHHHHHHHHHHHHHHc
Confidence 3554444445566677777777765433333344555 55666432100000 0 00 01223345556677
Q ss_pred cCCCEEEEe
Q psy8693 105 YNLPFLMVG 113 (282)
Q Consensus 105 ~~~~~~~v~ 113 (282)
+.+|+|...
T Consensus 100 ~~kPvIaaV 108 (265)
T PRK05674 100 LKIPTLAVV 108 (265)
T ss_pred CCCCEEEEE
Confidence 888988554
No 207
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=24.70 E-value=67 Score=29.53 Aligned_cols=48 Identities=23% Similarity=0.243 Sum_probs=41.1
Q ss_pred EecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHH
Q psy8693 73 LQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRC 125 (282)
Q Consensus 73 v~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~ 125 (282)
+++|+|...-| |++++...++++++++.+.++.+.-.||=|+++++..
T Consensus 205 ~~~GaDiI~lD-----n~~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~y 252 (277)
T TIGR01334 205 LQASPDILQLD-----KFTPQQLHHLHERLKFFDHIPTLAAAGGINPENIADY 252 (277)
T ss_pred HHcCcCEEEEC-----CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHH
Confidence 46788888888 8899999999999987777888999999999887664
No 208
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=24.57 E-value=2.4e+02 Score=22.77 Aligned_cols=46 Identities=13% Similarity=0.094 Sum_probs=30.9
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCC-CEEEEeCCCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNL-PFLMVGGGGY 117 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~-~~~~v~eGGY 117 (282)
..+.+.+||+|.+|+= +.-|...+.++.+.+++.+. .+.++.||+-
T Consensus 44 ~aa~~~~adiVglS~L-----------~t~~~~~~~~~~~~l~~~gl~~v~vivGG~~ 90 (128)
T cd02072 44 DAAIETDADAILVSSL-----------YGHGEIDCKGLREKCDEAGLKDILLYVGGNL 90 (128)
T ss_pred HHHHHcCCCEEEEecc-----------ccCCHHHHHHHHHHHHHCCCCCCeEEEECCC
Confidence 3455779999999862 22366777888889988765 3444445544
No 209
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=24.54 E-value=1.3e+02 Score=29.25 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=36.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCC----------CCcCCCCCCCHHHHHHHHH
Q psy8693 43 RDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLT----------GDRLGCFNLTVRGHGKCVE 100 (282)
Q Consensus 43 ~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~----------~Dplg~~~lt~~~~~~~~~ 100 (282)
-.|.+.++|...++.++.- ...+|++|+ -.|.|... ..-.|....|..|..++-+
T Consensus 91 ~~~~~~~~y~~~~~~~l~~--~~~~p~~i~-DdGg~~~~~~~~~~~~~~~~~~G~~EeTttGv~rl~~ 155 (413)
T cd00401 91 WKGETLEEYWWCIEQALKF--PDGEPNMIL-DDGGDLTLLIHKKHPELLPGIRGISEETTTGVHRLYK 155 (413)
T ss_pred EcCCCHHHHHHHHHHHHhc--cCCCCcEEE-ecchHHHHHHHhhhhhhhhccEEEeecchHHHHHHHH
Confidence 3578888998877666531 113897665 89988754 2246777888888776544
No 210
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=24.43 E-value=1.4e+02 Score=27.28 Aligned_cols=36 Identities=11% Similarity=0.362 Sum_probs=26.8
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGG 115 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eG 115 (282)
.++++++||+||...++.+ ....+.+++|++.+...
T Consensus 87 ~~l~~~~pDlVi~d~~~~~-------------------~~aA~~~~iP~i~i~~q 122 (321)
T TIGR00661 87 NIIREYNPDLIISDFEYST-------------------VVAAKLLKIPVICISNQ 122 (321)
T ss_pred HHHHhcCCCEEEECCchHH-------------------HHHHHhcCCCEEEEecc
Confidence 6788999999997766444 23456678999988773
No 211
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=24.19 E-value=2.5e+02 Score=23.79 Aligned_cols=57 Identities=14% Similarity=0.177 Sum_probs=34.5
Q ss_pred HHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHHHHHHHHcCCC
Q psy8693 63 METFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSE 137 (282)
Q Consensus 63 ~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~~~~~~~~g~~ 137 (282)
+.+.+||+||..... +-......+.+.+.|++++-..... .-..-+...++.++|++
T Consensus 56 i~~l~PDlIi~~~~~----------------~~~~~~~~~~~~~ip~~~~~~~~~~--~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 56 ILALKPDLIIGSSFY----------------GQSEEIEKLLEAGIPVVVFDSSSPF--DDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHT--SEEEEETTS----------------SCHHHHHHHHHTTSEEEEESSTTCS--HHHHHHHHHHHHHHTSH
T ss_pred HHhCCCCEEEEeccc----------------cchHHHHHHhcccceEEEeecccch--HHHHHHHHHHHHhcccH
Confidence 347899999988774 2234456667779999987776654 22233344555666643
No 212
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=24.11 E-value=4.2e+02 Score=22.00 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=34.9
Q ss_pred HHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcC
Q psy8693 61 KVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIR 120 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~ 120 (282)
.+++...++.+|+- |+-|. .+|...|+...+.....+..++++.||=|-+.
T Consensus 58 ~il~~~~~~~~i~L--------De~Gk-~~sS~~fA~~l~~~~~~g~~i~FvIGGa~G~~ 108 (153)
T TIGR00246 58 RILAAIGKAHVVTL--------DIPGK-PWTTPQLADTLEKWKTDGRDVTLLIGGPEGLS 108 (153)
T ss_pred HHHHhCCCCeEEEE--------cCCCC-cCCHHHHHHHHHHHhccCCeEEEEEcCCCcCC
Confidence 44445555665542 55554 58999999988877666656899999966543
No 213
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=24.09 E-value=3.4e+02 Score=29.34 Aligned_cols=69 Identities=13% Similarity=0.227 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCC-CCCCCCcCCCCCCCHHHHHHHHHHHHh-----cCCCEEEEeCCCCCcChhHHHH
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGA-DSLTGDRLGCFNLTVRGHGKCVEFVKR-----YNLPFLMVGGGGYTIRNVSRCW 126 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~-D~~~~Dplg~~~lt~~~~~~~~~~~~~-----~~~~~~~v~eGGY~~~~~~~~~ 126 (282)
+-+++.|..+++.|+|++|+|.+++ =...+| +...+++.+++ .+.|++.|--.||.- +....|
T Consensus 557 ~~L~~~I~~~~~~~~p~~I~V~tTc~~eiIGD----------Di~~vi~~~~~~~~~~~~~pvi~v~tpgF~G-s~~~G~ 625 (917)
T PRK14477 557 ENLKQGILRVIEKFKPKVIGVMTTGLTETMGD----------DVRSAIVQFREEHPELDDVPVVWASTPDYCG-SLQEGY 625 (917)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCchHhhhhc----------CHHHHHHHHHhhccccCCCeEEEeeCCCCcc-CHHHHH
Confidence 3566677778889999999887763 122222 33334444433 256888888888864 344544
Q ss_pred HHHHHH
Q psy8693 127 TYETSV 132 (282)
Q Consensus 127 ~~~~~~ 132 (282)
...+.+
T Consensus 626 ~~a~~a 631 (917)
T PRK14477 626 AAAVEA 631 (917)
T ss_pred HHHHHH
Confidence 433333
No 214
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=24.05 E-value=1.2e+02 Score=26.44 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHH-HcCCCEEEEecC
Q psy8693 48 DESYESIFVPIISKVME-TFQPSAVVLQCG 76 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~-~f~Pd~ivv~~G 76 (282)
-+++....+.+-.++.+ .|+||+||..++
T Consensus 9 w~~I~~~~~~lA~kI~~s~~~PDvIiaiaR 38 (192)
T COG2236 9 WEEIHRLCRALAEKIRASGFKPDVIVAIAR 38 (192)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCEEEEEcC
Confidence 34566777777777764 599999998887
No 215
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=24.03 E-value=1.7e+02 Score=24.55 Aligned_cols=25 Identities=16% Similarity=0.312 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 234 ESYESIFVPIISKVMETFQPSAVVL 258 (282)
Q Consensus 234 ~~y~~~~~~~~~~~~~~f~P~~ivv 258 (282)
.+=+..+.+.|..++++|+||.++|
T Consensus 43 ~~Rl~~I~~~l~~~i~~~~Pd~vai 67 (164)
T PRK00039 43 PERLKQIYDGLSELIDEYQPDEVAI 67 (164)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 3334444567889999999999986
No 216
>PRK07509 enoyl-CoA hydratase; Provisional
Probab=23.96 E-value=2.2e+02 Score=25.28 Aligned_cols=37 Identities=19% Similarity=0.146 Sum_probs=21.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
++|=|=...+=+.+.+..+.+.+..+-+.-..-+||+
T Consensus 17 tlnrp~~~Nal~~~~~~~l~~al~~~~~d~~vr~vvl 53 (262)
T PRK07509 17 RLNRPDKMNALDFAMFEELIATIKRLKKDRGIRAVIL 53 (262)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHhhCCCCeEEEE
Confidence 3444444455566777777777765543333345665
No 217
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=23.92 E-value=96 Score=27.16 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEecCC
Q psy8693 52 ESIFVPIISKVMETFQPSAVVLQCGA 77 (282)
Q Consensus 52 ~~~~~~~l~~~~~~f~Pd~ivv~~G~ 77 (282)
..+|++.|...+++++||+|++ |||
T Consensus 64 r~~~d~~l~~~l~~~~~dlvvL-AGy 88 (200)
T COG0299 64 REAFDRALVEALDEYGPDLVVL-AGY 88 (200)
T ss_pred HHHHHHHHHHHHHhcCCCEEEE-cch
Confidence 4567777788899999999875 553
No 218
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=23.77 E-value=88 Score=32.01 Aligned_cols=54 Identities=11% Similarity=0.180 Sum_probs=37.0
Q ss_pred HHHHHHHcCCCEEEEecCCC------CCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEE
Q psy8693 59 ISKVMETFQPSAVVLQCGAD------SLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMV 112 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D------~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v 112 (282)
+...+++++||+||-.|+.= -...+|...+.....+-..+.+.+++.+.+.+++
T Consensus 420 v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~~~~~~~N~~gt~~l~~a~~~~g~~~v~~ 479 (668)
T PLN02260 420 LLADIRNVKPTHVFNAAGVTGRPNVDWCESHKVETIRANVVGTLTLADVCRENGLLMMNF 479 (668)
T ss_pred HHHHHHhhCCCEEEECCcccCCCCCChHHhCHHHHHHHHhHHHHHHHHHHHHcCCeEEEE
Confidence 44566788999999988742 2234555555566666777888888888776544
No 219
>PRK07827 enoyl-CoA hydratase; Provisional
Probab=23.74 E-value=2.4e+02 Score=25.14 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=20.9
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
++|-|=...+=+.+.+..+.+.+..+-..-...+||+
T Consensus 20 ~lnrp~~~Nal~~~~~~el~~~l~~~~~d~~vr~vVl 56 (260)
T PRK07827 20 TLDSPHNRNALSARLVAQLHDGLRAAAADPAVRAVVL 56 (260)
T ss_pred EEcCccccCCCCHHHHHHHHHHHHHHhcCCCeeEEEE
Confidence 4555544455677777888777765433223344554
No 220
>PRK14556 pyrH uridylate kinase; Provisional
Probab=23.72 E-value=1.6e+02 Score=26.69 Aligned_cols=49 Identities=22% Similarity=0.490 Sum_probs=36.6
Q ss_pred CEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHh---cCCCEEEEeCCCCCc
Q psy8693 69 SAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKR---YNLPFLMVGGGGYTI 119 (282)
Q Consensus 69 d~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~---~~~~~~~v~eGGY~~ 119 (282)
.-|++..+--++.+| ..+.+..+-..++.+.+++ .+..+.+|.|||--.
T Consensus 16 ~rvllKlsGe~l~~~--~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~ 67 (249)
T PRK14556 16 KRILLKLSGESLSAD--QGFGINVESAQPIINQIKTLTNFGVELALVVGGGNIL 67 (249)
T ss_pred CEEEEEEehhhCcCC--CCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHH
Confidence 458888888888887 3556788777777776665 467888888888643
No 221
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=23.69 E-value=1.1e+02 Score=27.54 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHcCCCEEEEecCCCCCCCCcCCCCCCCH--HHHHHHHHHHHhcCCCEEEE
Q psy8693 63 METFQPSAVVLQCGADSLTGDRLGCFNLTV--RGHGKCVEFVKRYNLPFLMV 112 (282)
Q Consensus 63 ~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~--~~~~~~~~~~~~~~~~~~~v 112 (282)
+++-+|++|++.+| |.+.+.++..+.-.. ..-..+.+.++..+..++.+
T Consensus 39 ~r~~~~~~l~ld~G-D~~~gs~~~~~~~~~~~~~~~~~~~~ln~~g~d~~~l 89 (277)
T cd07410 39 ARAENPNTLLIDNG-DTIQGSPLADYYAKIEDGDPHPMIAAMNALGYDAGTL 89 (277)
T ss_pred HHhcCCCeEEEeCC-ccCCccHHHHHhhhcccCCCChHHHHHHhcCCCEEee
Confidence 34458999999888 777776654332100 01134677777777655544
No 222
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=23.61 E-value=4.1e+02 Score=25.39 Aligned_cols=58 Identities=19% Similarity=0.366 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCCCcC
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVKR-YNLPFLMVGGGGYTIR 120 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~~-~~~~~~~v~eGGY~~~ 120 (282)
..+.+.|..+.++|+|++|+|... .....+| ++..+.+.+++ .+.|++.+--.||...
T Consensus 72 ~~L~~~i~~~~~~~~P~~i~v~~tC~~~~iGd----------Di~~v~~~~~~~~~~~vi~v~t~gf~g~ 131 (410)
T cd01968 72 KKLYKAILEIIERYHPKAVFVYSTCVVALIGD----------DIDAVCKTASEKFGIPVIPVHSPGFVGN 131 (410)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCCchhhhcc----------CHHHHHHHHHHhhCCCEEEEECCCcccC
Confidence 355666777888999998766554 3344444 33444444442 4789999988888553
No 223
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=23.50 E-value=88 Score=23.86 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=15.7
Q ss_pred HHHHHHHHHcCCCEEEEecC
Q psy8693 242 PIISKVMETFQPSAVVLQCG 261 (282)
Q Consensus 242 ~~~~~~~~~f~P~~ivvsaG 261 (282)
+.+...+++++||+|.+|+-
T Consensus 41 ~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 41 EELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHhcCCCcEEEEEcc
Confidence 44556778899999999984
No 224
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=23.49 E-value=86 Score=25.50 Aligned_cols=40 Identities=25% Similarity=0.283 Sum_probs=24.7
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCC-CCCC
Q psy8693 222 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGA-DSLT 266 (282)
Q Consensus 222 ~~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~-D~~~ 266 (282)
.+|..+...+ ..+.+..+++ .+.+++|++|+++.|. |+..
T Consensus 25 v~N~Gi~G~~-~~~~~~~~~~----~~~~~~p~~vvi~~G~ND~~~ 65 (171)
T cd04502 25 VVNRGFGGST-LADCLHYFDR----LVLPYQPRRVVLYAGDNDLAS 65 (171)
T ss_pred eeecCcccch-HHHHHHHHHh----hhccCCCCEEEEEEecCcccC
Confidence 4666665544 3344444443 3456899999999997 5543
No 225
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=23.25 E-value=3.3e+02 Score=25.00 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=31.6
Q ss_pred HHHHHHHHHHcCC-CEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCC
Q psy8693 56 VPIISKVMETFQP-SAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGY 117 (282)
Q Consensus 56 ~~~l~~~~~~f~P-d~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY 117 (282)
...+..++..++| |+|++|. |. -++..--..+...+++.+.|+++..-.-|
T Consensus 52 ~~~~~~~~~~~~~~Dvv~~~~--------P~---~~~~~~~~~~~~~~k~~~~k~i~~ihD~~ 103 (333)
T PRK09814 52 SKRLDGILASLKPGDIVIFQF--------PT---WNGFEFDRLFVDKLKKKQVKIIILIHDIE 103 (333)
T ss_pred HHHHHHHHhcCCCCCEEEEEC--------CC---CchHHHHHHHHHHHHHcCCEEEEEECCcH
Confidence 3344456778999 9999988 32 12222224455666666788887775544
No 226
>cd07359 PCA_45_Doxase_B_like Subunit B of the Class III Extradiol dioxygenase, Protocatechuate 4,5-dioxygenase, and simlar enzymes. This subfamily of class III extradiol dioxygenases consists of a number of proteins with known enzymatic activities: Protocatechuate (PCA) 4,5-dioxygenase (LigAB), 2,3-dihydroxyphenylpropionate 1,2-dioxygenase (MhpB), 3-O-Methylgallate Dioxygenase, 2-aminophenol 1,6-dioxygenase, as well as proteins without any known enzymatic activity. These proteins play essential roles in the degradation of aromatic compounds by catalyzing the incorporation of both atoms of molecular oxygen into their preferred substrates. As members of the Class III extradiol dioxygenase family, the enzymes use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like class III enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model repres
Probab=23.13 E-value=5.4e+02 Score=22.96 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCCEEEEecC-----CC-------------CC-------CCCcCCCCCCCHHHHHHHHHHHH
Q psy8693 49 ESYESIFVPIISKVMETFQPSAVVLQCG-----AD-------------SL-------TGDRLGCFNLTVRGHGKCVEFVK 103 (282)
Q Consensus 49 ~~y~~~~~~~l~~~~~~f~Pd~ivv~~G-----~D-------------~~-------~~Dplg~~~lt~~~~~~~~~~~~ 103 (282)
+.+.+.++++ ...+++.+||.|||-.- +. .. ...|.+.+...++--.++.+.++
T Consensus 27 ~~~~~~l~~~-~~~l~~~~Pd~ivvis~~h~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~d~elA~~i~~~~~ 105 (271)
T cd07359 27 AAVFAAFARI-RDRLEAARPDVVVVVGNDHFTNFFLDNMPAFAIGIADSYEGPDEGWLGIPRAPVPGDADLARHLLAGLV 105 (271)
T ss_pred HHHHHHHHHH-HHHHHHhCCCEEEEEeCcHHhhcCcccCCceEEeecccccCCccccccCcCCCCCCCHHHHHHHHHHHH
Confidence 4456666663 34566789999988766 53 11 13444555555554455555555
Q ss_pred hcCCCEEEE
Q psy8693 104 RYNLPFLMV 112 (282)
Q Consensus 104 ~~~~~~~~v 112 (282)
+.+.++...
T Consensus 106 ~~g~~~a~~ 114 (271)
T cd07359 106 EDGFDVAFS 114 (271)
T ss_pred HcCCCeecc
Confidence 555555443
No 227
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=23.10 E-value=93 Score=28.83 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=40.5
Q ss_pred ecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHH
Q psy8693 74 QCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRC 125 (282)
Q Consensus 74 ~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~ 125 (282)
.+|+|...=| |++++...++++++++...++++--.||=|+++++..
T Consensus 217 ~~gaDiI~LD-----nm~~e~vk~av~~~~~~~~~v~ieaSGGI~~~ni~~y 263 (289)
T PRK07896 217 AEGAELVLLD-----NFPVWQTQEAVQRRDARAPTVLLESSGGLTLDTAAAY 263 (289)
T ss_pred HcCCCEEEeC-----CCCHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHHH
Confidence 4788888888 7889999999998888777788889999999888664
No 228
>PRK08321 naphthoate synthase; Validated
Probab=22.52 E-value=3.6e+02 Score=24.73 Aligned_cols=37 Identities=11% Similarity=-0.003 Sum_probs=21.1
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
++|=|=...+=+.+.+..+.+++..+-..-...+||+
T Consensus 39 tlnrP~~~Nal~~~~~~~l~~al~~~~~d~~vrvvVl 75 (302)
T PRK08321 39 AFDRPEVRNAFRPHTVDELYRALDHARMSPDVGCVLL 75 (302)
T ss_pred EeCCcccccCCCHHHHHHHHHHHHHHhhCCCcEEEEE
Confidence 5666644455567777777777765433333344554
No 229
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=22.44 E-value=3.2e+02 Score=23.54 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHH----HHHhcCCCEEEEe
Q psy8693 55 FVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVE----FVKRYNLPFLMVG 113 (282)
Q Consensus 55 ~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~----~~~~~~~~~~~v~ 113 (282)
+...+..+.++++|++||+=. ...+.... . -.-..+....+.+ ++++.+.+++++-
T Consensus 111 l~~~i~~~~~~~~~~~vvID~-l~~l~~~~-~-~~~~~~~~~~~~~~L~~la~~~~~~ii~~~ 170 (242)
T cd00984 111 IRSRARRLKKEHGLGLIVIDY-LQLMSGSK-K-KGNRQQEVAEISRSLKLLAKELNVPVIALS 170 (242)
T ss_pred HHHHHHHHHHhcCCCEEEEcC-chhcCCCC-C-CCCHHHHHHHHHHHHHHHHHHhCCeEEEec
Confidence 334455566778999999743 33322111 0 0001122333333 3445688887765
No 230
>cd02651 nuc_hydro_IU_UC_XIUA nuc_hydro_IU_UC_XIUA: inosine-uridine preferring, xanthosine-inosine-uridine-adenosine-preferring and, uridine-cytidine preferring nucleoside hydrolases. Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. This group contains proteins similar to nucleoside hydrolases which hydrolyze both pyrimidine and purine ribonucleosides: the inosine-uridine preferring nucleoside hydrolase from Crithidia fasciculata, the inosine-uridine-xanthosine preferring nucleoside hydrolase RihC from Escherichia coli and the xanthosine-inosine-uridine-adenosine-preferring nucleoside hydrolase RihC from Salmonella enterica serovar Typhimurium. This group also contains proteins similar to the pyrimidine-specific uridine-cytidine preferring nucleoside hydrolases URH1 from Saccharomyces cerevisiae, E. coli RihA and E. coli RihB. E. coli RihA is equally efficient with uridine a
Probab=22.39 E-value=74 Score=29.22 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=30.4
Q ss_pred HHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCh
Q psy8693 59 ISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRN 121 (282)
Q Consensus 59 l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~ 121 (282)
+...++++..++.||+.| ||..+.+-.+-+-.+.+++ +-++++||.+...+
T Consensus 105 i~~~~~~~~~evtiva~G-------PLTNlA~al~~~P~~~~~i-----k~iviMGG~~~~GN 155 (302)
T cd02651 105 IIDTLRASPEPITLVATG-------PLTNIALLLRKYPELAERI-----KEIVLMGGALGRGN 155 (302)
T ss_pred HHHHHHhCCCCEEEEEcC-------chHHHHHHHHHChhhHhhc-----CEEEEecCCcCCCC
Confidence 345677888899999999 6655433333333333333 34677888774333
No 231
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=22.34 E-value=2.8e+02 Score=25.72 Aligned_cols=70 Identities=19% Similarity=0.067 Sum_probs=48.0
Q ss_pred HHHHHcCCCEEEEec-CCC-CCCCCcCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCCCC-CcChhHHHHHHHHH
Q psy8693 61 KVMETFQPSAVVLQC-GAD-SLTGDRLGCFNLTVRGHGKCVEFVKR-YNLPFLMVGGGGY-TIRNVSRCWTYETS 131 (282)
Q Consensus 61 ~~~~~f~Pd~ivv~~-G~D-~~~~Dplg~~~lt~~~~~~~~~~~~~-~~~~~~~v~eGGY-~~~~~~~~~~~~~~ 131 (282)
.++++-..++|.+|. |+- +..+=|=.+ .+|.+.+...++.+.+ .++|+++=.+.|| ++.++.|.......
T Consensus 31 ri~e~~Gf~ai~~Sg~~~a~~~lG~PD~g-~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~ 104 (292)
T PRK11320 31 LLAERAGFKAIYLSGGGVAAASLGLPDLG-ITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIK 104 (292)
T ss_pred HHHHHcCCCEEEeCHHHHHhHhcCCCCCC-CCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHH
Confidence 456677778886665 344 333545433 5788888887777765 4899999999999 66677776655544
No 232
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=22.21 E-value=1.2e+02 Score=24.61 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=24.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC
Q psy8693 222 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD 263 (282)
Q Consensus 222 ~~N~pl~~g~~d~~y~~~~~~~~~~~~~~f~P~~ivvsaG~D 263 (282)
.+|..+...+ ...++..+ .+.+...+||+|+|..|..
T Consensus 26 v~n~g~~G~t-~~~~~~~~----~~~~~~~~pd~v~i~~G~N 62 (174)
T cd01841 26 VNNLGIAGIS-SRQYLEHI----EPQLIQKNPSKVFLFLGTN 62 (174)
T ss_pred EEeccccccc-HHHHHHHH----HHHHHhcCCCEEEEEeccc
Confidence 4666666544 33444444 3445578999999999974
No 233
>cd07368 PhnC_Bs_like PhnC is a Class III Extradiol ring-cleavage dioxygenase involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. This subfamily is composed of Burkholderia sp. PhnC and similar poteins. PhnC is one of nine protein products encoded by the phn locus. These proteins are involved in the polycyclic aromatic hydrocarbon (PAH) catabolic pathway. PhnC is a member of the class III extradiol dioxygenase family, a group os enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. LigAB-like enzymes are usually composed of two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents the catalytic subunit, B.
Probab=22.04 E-value=5.6e+02 Score=23.23 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCCEEEEec
Q psy8693 48 DESYESIFVPIISKVMETFQPSAVVLQC 75 (282)
Q Consensus 48 d~~y~~~~~~~l~~~~~~f~Pd~ivv~~ 75 (282)
.+.+..+++++= ..+++++||+|||-.
T Consensus 28 ~~~~~~a~~~~~-~~v~~~~pD~ivvi~ 54 (277)
T cd07368 28 REICWHAYAICA-ERLAALQVTSVVVIG 54 (277)
T ss_pred HHHHHHHHHHHH-HHHHHcCCCEEEEEc
Confidence 345667776654 567899999999975
No 234
>TIGR01286 nifK nitrogenase molybdenum-iron protein beta chain. This model represents the majority of known sequences of the nitrogenase molybdenum-iron protein beta subunit. A distinct clade in a phylogenetic tree contains molybdenum-iron, vanadium-iron, and iron-iron forms of nitrogenase beta subunit and is excluded from this model. Nitrogenase, also called dinitrogenase, is responsible for nitrogen fixation. Note: the trusted cutoff score has recently been lowered to include an additional family in which the beta subunit is shorter by about 50 amino acids at the N-terminus. In species with the shorter form of the beta subunit, the alpha subunit has a novel insert of similar length.
Probab=21.86 E-value=4.8e+02 Score=26.17 Aligned_cols=57 Identities=11% Similarity=0.206 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHcCCCEEEEecCCC-CCCCCcCCCCCCCHHHHHHHHHHHHhc-----CCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETFQPSAVVLQCGAD-SLTGDRLGCFNLTVRGHGKCVEFVKRY-----NLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~Pd~ivv~~G~D-~~~~Dplg~~~lt~~~~~~~~~~~~~~-----~~~~~~v~eGGY~~ 119 (282)
+-+.+.|..+.+.|+|++|+|.+.+= ...+| +...+++.+++- +.||+.+--.||.-
T Consensus 128 ~~L~e~I~~~~~~y~P~~I~V~tTC~~evIGD----------Di~a~i~~~~~~~~~p~~~pVi~v~TpgF~G 190 (515)
T TIGR01286 128 KNMVDGLQNCYALYKPKMIAVSTTCMAEVIGD----------DLNAFIGNAKKEGFIPDDFPVPFAHTPSFVG 190 (515)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHhhc----------cHHHHHHHHHHhcCCCCCCceEEeeCCCCcc
Confidence 45566677788899999999987631 12233 223344444432 45899999999975
No 235
>PF00378 ECH: Enoyl-CoA hydratase/isomerase family; InterPro: IPR001753 The crotonase superfamily is comprised of mechanistically diverse proteins that share a conserved trimeric quaternary structure (sometimes a hexamer consisting of a dimer of trimers), the core of which consists of 4 turns of a (beta/beta/alpha)n superhelix. Some enzymes in the superfamily have been shown to display dehalogenase, hydratase, and isomerase activities, while others have been implicated in carbon-carbon bond formation and cleavage as well as the hydrolysis of thioesters []. However, these different enzymes share the need to stabilise an enolate anion intermediate derived from an acyl-CoA substrate. This is accomplished by two structurally conserved peptidic NH groups that provide hydrogen bonds to the carbonyl moieties of the acyl-CoA substrates and form an "oxyanion hole". The CoA thioester derivatives bind in a characteristic hooked shape and a conserved tunnel binds the pantetheine group of CoA, which links the 3'-phosphate ADP binding site to the site of reaction []. Enzymes in the crotonase superfamily include: Enoyl-CoA hydratase (crotonase; 4.2.1.17 from EC), which catalyses the hydratation of 2-trans-enoyl-CoA into 3-hydroxyacyl-CoA []. 3-2trans-enoyl-CoA isomerase (or dodecenoyl-CoA isomerise; 5.3.3.8 from EC), which shifts the 3-double bond of the intermediates of unsaturated fatty acid oxidation to the 2-trans position []. 3-hydroxbutyryl-CoA dehydratase (crotonase; 4.2.1.55 from EC), a bacterial enzyme involved in the butyrate/butanol-producing pathway. 4-Chlorobenzoyl-CoA dehalogenase (3.8.1.6 from EC), a Pseudomonas enzyme which catalyses the conversion of 4-chlorobenzoate-CoA to 4-hydroxybenzoate-CoA []. Dienoyl-CoA isomerise, which catalyses the isomerisation of 3-trans,5-cis-dienoyl-CoA to 2-trans,4-trans-dienoyl-CoA []. Naphthoate synthase (MenB, or DHNA synthetase; 4.1.3.36 from EC), a bacterial enzyme involved in the biosynthesis of menaquinone (vitamin K2) []. Carnitine racemase (gene caiD), which catalyses the reversible conversion of crotonobetaine to L-carnitine in Escherichia coli []. Methylmalonyl CoA decarboxylase (MMCD; 4.1.1.41 from EC), which has a hexameric structure (dimer of trimers) []. Carboxymethylproline synthase (CarB), which is involved in carbapenem biosynthesis []. 6-oxo camphor hydrolase, which catalyses the desymmetrisation of bicyclic beta-diketones to optically active keto acids []. The alpha subunit of fatty oxidation complex, a multi-enzyme complex that catalyses the last three reactions in the fatty acid beta-oxidation cycle []. AUH protein, a bifunctional RNA-binding homologue of enoyl-CoA hydratase []. This entry represents the core domain found in crotonase superfamily members.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2VRE_B 3RSI_A 1HZD_F 2ZQR_E 2ZQQ_D 3R9S_C 1O8U_E 1SZO_C 3MOY_A 2UZF_A ....
Probab=21.78 E-value=3e+02 Score=24.01 Aligned_cols=75 Identities=12% Similarity=0.158 Sum_probs=44.5
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCC------CH-------HHHHHHHHHHH
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNL------TV-------RGHGKCVEFVK 103 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~l------t~-------~~~~~~~~~~~ 103 (282)
++|-|=+..+=+.+.+..+.+.+..+-+.-+.-+||++++-+... .+..+ +. +.+..+...+.
T Consensus 12 ~ln~p~~~N~l~~~~~~~l~~~l~~~~~d~~v~vvv~~~~~~~F~----~G~Dl~~~~~~~~~~~~~~~~~~~~l~~~l~ 87 (245)
T PF00378_consen 12 TLNRPEKRNALNPEMLDELEEALDEAEADPDVKVVVISGGGKAFC----AGADLKEFLNSDEEEAREFFRRFQELLSRLA 87 (245)
T ss_dssp EEECGGGTTEBSHHHHHHHHHHHHHHHHSTTESEEEEEESTSESB----ESB-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCCCCCCCHHHHHHHHHHHHHHHhcCCccEEEEeecccccc----cccchhhhhccccccccccchhhccccccch
Confidence 456665566667788888888887765544444787776533221 11111 11 22233455566
Q ss_pred hcCCCEEEEeCC
Q psy8693 104 RYNLPFLMVGGG 115 (282)
Q Consensus 104 ~~~~~~~~v~eG 115 (282)
.+.+|+|+...|
T Consensus 88 ~~~kp~Iaav~G 99 (245)
T PF00378_consen 88 NFPKPTIAAVNG 99 (245)
T ss_dssp HSSSEEEEEESS
T ss_pred hhhhheeecccc
Confidence 679999988774
No 236
>PRK11423 methylmalonyl-CoA decarboxylase; Provisional
Probab=21.70 E-value=2.8e+02 Score=24.80 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=39.8
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEec---------CCCCCCCCcCC-C-CCCCHHHHHHHHHHHHhc
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQC---------GADSLTGDRLG-C-FNLTVRGHGKCVEFVKRY 105 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~---------G~D~~~~Dplg-~-~~lt~~~~~~~~~~~~~~ 105 (282)
++|=|=...+=+.+.+..+.+.+..+.+. ...+||+.. |.|...-...+ . ..+ ...+..+.+.+..+
T Consensus 18 tlnrp~~~Nal~~~~~~~l~~al~~~~~d-~v~~vvltg~~~~~~FcaG~Dl~~~~~~~~~~~~~-~~~~~~l~~~i~~~ 95 (261)
T PRK11423 18 TFNNPAKRNALSKVLIDDLMQALSDLNRP-EIRVVILRAPSGSKVWSAGHDIHELPSGGRDPLSY-DDPLRQILRMIQKF 95 (261)
T ss_pred EEcCccccCCCCHHHHHHHHHHHHHHhcC-CceEEEEECCCCCCeeECCcCHHHHhhccccHHHH-HHHHHHHHHHHHhC
Confidence 45656555666777888888877654433 356666654 23322100000 0 000 12233455666778
Q ss_pred CCCEEEEeC
Q psy8693 106 NLPFLMVGG 114 (282)
Q Consensus 106 ~~~~~~v~e 114 (282)
.+|+|....
T Consensus 96 ~kPvIaav~ 104 (261)
T PRK11423 96 PKPVIAMVE 104 (261)
T ss_pred CCCEEEEEe
Confidence 899886554
No 237
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=21.55 E-value=84 Score=26.38 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHH--cCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCC
Q psy8693 53 SIFVPIISKVMET--FQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGG 116 (282)
Q Consensus 53 ~~~~~~l~~~~~~--f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGG 116 (282)
+.|+++..++++. -++|+||+ |-+|.|.+...+|.+.+..+.+.+.|++.++-=-
T Consensus 79 e~fe~~~~~~L~~~~~~~~livi---------DEIG~mEl~~~~F~~~v~~~l~s~~~vi~vv~~~ 135 (168)
T PF03266_consen 79 ESFEEIGLPALRNALSSSDLIVI---------DEIGKMELKSPGFREAVEKLLDSNKPVIGVVHKR 135 (168)
T ss_dssp HHHHCCCCCCCHHHHHCCHEEEE------------STTCCC-CHHHHHHHHHHCTTSEEEEE--SS
T ss_pred HHHHHHHHHHHHhhcCCCCEEEE---------eccchhhhcCHHHHHHHHHHHcCCCcEEEEEecC
Confidence 4455543444544 58888885 8999999999999999999999888888876433
No 238
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.44 E-value=4.9e+02 Score=25.15 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHcCC-CEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETFQP-SAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~P-d~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~ 119 (282)
.-+.+.|..+.++|+| ++|+|.+. .....+|- +..+.+.++ +.+.|++.|--.||.-
T Consensus 84 ~kL~~~I~~~~~~~~p~~~I~V~tTC~~~iIGdD----------i~~v~~~~~~~~~~pvi~v~t~gf~g 143 (421)
T cd01976 84 KKLAKAIDEAYELFPLNKGISVQSECPVGLIGDD----------IEAVARKASKELGIPVVPVRCEGFRG 143 (421)
T ss_pred HHHHHHHHHHHHhCCCccEEEEECCChHHHhccC----------HHHHHHHHHHhhCCCEEEEeCCCccC
Confidence 3567778888999999 98777654 33444442 333444443 3588999999999964
No 239
>PRK08252 enoyl-CoA hydratase; Provisional
Probab=21.33 E-value=3.5e+02 Score=23.93 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=19.5
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEE
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVL 73 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv 73 (282)
+|=|=...+=+.+.+..+.+.+..+-+.-...+||+
T Consensus 18 lnrp~~~Nal~~~~~~~l~~~l~~~~~d~~vr~vvl 53 (254)
T PRK08252 18 INRPEARNAVNAAVAQGLAAALDELDADPDLSVGIL 53 (254)
T ss_pred ECCCcccCCCCHHHHHHHHHHHHHHhhCCCceEEEE
Confidence 444433344566677777777765443323345655
No 240
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=21.21 E-value=5.9e+02 Score=23.94 Aligned_cols=50 Identities=22% Similarity=0.378 Sum_probs=36.5
Q ss_pred HHHHHHcCCCEEEEe-cCCCCCCCCcCCCCCCCHHHHHHHHHHHHh-cCCCEEEEeCC
Q psy8693 60 SKVMETFQPSAVVLQ-CGADSLTGDRLGCFNLTVRGHGKCVEFVKR-YNLPFLMVGGG 115 (282)
Q Consensus 60 ~~~~~~f~Pd~ivv~-~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~-~~~~~~~v~eG 115 (282)
..+.++++.|+|-|. +|.|.-.. +-+.+.+.++++.+.+ .+.|+++.+-|
T Consensus 82 k~q~~~~GAd~Idl~~~s~dp~~~------d~~~~e~~~~Vk~V~eavd~PL~Id~s~ 133 (319)
T PRK04452 82 KKCVEEYGADMITLHLISTDPNGK------DKSPEEAAKTVEEVLQAVDVPLIIGGSG 133 (319)
T ss_pred HHHHHHhCCCEEEEECCCCCcccc------cchHHHHHHHHHHHHHhCCCCEEEecCC
Confidence 345569999999999 77554332 3478889999999875 58899854443
No 241
>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]
Probab=21.09 E-value=5.2e+02 Score=22.46 Aligned_cols=63 Identities=11% Similarity=0.093 Sum_probs=46.3
Q ss_pred HHHHHHHHcCCCEEEEecCCC-CCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCcCh
Q psy8693 58 IISKVMETFQPSAVVLQCGAD-SLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRN 121 (282)
Q Consensus 58 ~l~~~~~~f~Pd~ivv~~G~D-~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~ 121 (282)
.+.++++++.-++..++.-.+ .+..|+... ..+.+...++.+.+++++.+++++..|.+....
T Consensus 49 ~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~a~~lg~~~vv~~~g~~~~~~ 112 (274)
T COG1082 49 ELKELLADYGLEITSLAPFSNNLLSPDEEER-EEALEELKRAIELAKELGAKVVVVHPGLGAGAD 112 (274)
T ss_pred HHHHHHHHcCcEEEeecccCCCcCCCchhhH-HHHHHHHHHHHHHHHHcCCCeEEeecccCCcCC
Confidence 445677788888888777777 556665554 566677777778888889999998888875543
No 242
>TIGR01282 nifD nitrogenase molybdenum-iron protein alpha chain. Nitrogenase consists of alpha (NifD) and beta (NifK) subunits of the molybdenum-iron protein and an ATP-binding iron-sulfur protein (NifH). This model describes a large clade of NifD proteins, but excludes a lineage that contains putative NifD and NifD homologs from species with vanadium-dependent nitrogenases.
Probab=20.81 E-value=5.5e+02 Score=25.26 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCC-CEEEEecC-CCCCCCCcCCCCCCCHHHHHHHHHHHH-hcCCCEEEEeCCCCCc
Q psy8693 53 SIFVPIISKVMETFQP-SAVVLQCG-ADSLTGDRLGCFNLTVRGHGKCVEFVK-RYNLPFLMVGGGGYTI 119 (282)
Q Consensus 53 ~~~~~~l~~~~~~f~P-d~ivv~~G-~D~~~~Dplg~~~lt~~~~~~~~~~~~-~~~~~~~~v~eGGY~~ 119 (282)
.-+.+.|..+.+.|+| ++|+|.+. ...+.+|- ...+.+.++ +.+.|++.+--.||.-
T Consensus 117 ~kL~~aI~e~~~~~~P~~~I~V~tTC~~~lIGDD----------i~av~~~~~~~~~~pVi~v~t~gf~G 176 (466)
T TIGR01282 117 KKLKKAIDEIEELFPLNKGISIQSECPVGLIGDD----------IEAVAKKASKELGKPVVPVRCEGFRG 176 (466)
T ss_pred HHHHHHHHHHHHhCCcccEEEEeCCChHHHhccC----------HHHHHHHHhhhcCCcEEEEeCCCcCC
Confidence 4567778888999999 88777654 33444442 233444443 3488999999999963
No 243
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=20.79 E-value=5.1e+02 Score=24.27 Aligned_cols=71 Identities=17% Similarity=0.333 Sum_probs=40.8
Q ss_pred EeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCcCCCCCCC----HHHHHHHHHHHHhcCCCEE--E
Q psy8693 38 VNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLT----VRGHGKCVEFVKRYNLPFL--M 111 (282)
Q Consensus 38 ~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt----~~~~~~~~~~~~~~~~~~~--~ 111 (282)
-|+.+|.- +.|+.+++ +...+++|+-=+|.+-==.=++.+ ..-. .+..++....+..++.|+| +
T Consensus 126 rNFGm~~P---eGyRKAlR--lm~~AekF~lPiitfIDT~GAypG-----~~AEErGQ~eAIA~nL~em~~LkvPiI~iV 195 (317)
T COG0825 126 RNFGMPRP---EGYRKALR--LMKLAEKFGLPIITFIDTPGAYPG-----IGAEERGQSEAIARNLREMARLKVPIISIV 195 (317)
T ss_pred hcCCCCCc---hHHHHHHH--HHHHHHHhCCCEEEEecCCCCCCC-----cchhhcccHHHHHHHHHHHhCCCCCEEEEE
Confidence 36666543 46888885 457899998666655311111111 1111 2344445555666788976 6
Q ss_pred EeCCCCC
Q psy8693 112 VGGGGYT 118 (282)
Q Consensus 112 v~eGGY~ 118 (282)
++|||--
T Consensus 196 IGEGgSG 202 (317)
T COG0825 196 IGEGGSG 202 (317)
T ss_pred ecCCCch
Confidence 6788875
No 244
>PRK09120 p-hydroxycinnamoyl CoA hydratase/lyase; Validated
Probab=20.70 E-value=2.3e+02 Score=25.57 Aligned_cols=76 Identities=12% Similarity=0.108 Sum_probs=38.0
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCC--EEEE-------ecCCCCCCC-CcCCCCCCC-H----HHHHHHHHH
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPS--AVVL-------QCGADSLTG-DRLGCFNLT-V----RGHGKCVEF 101 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd--~ivv-------~~G~D~~~~-Dplg~~~lt-~----~~~~~~~~~ 101 (282)
++|=|=...+=+.+.+..+.+.+..+-. .|+ +||+ ++|.|...- .....-..+ . +.+..+...
T Consensus 22 tlnrp~~~Nal~~~m~~el~~al~~~~~--d~~vr~vVl~g~g~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (275)
T PRK09120 22 TLNRPEKRNAMSPTLNREMIDVLDALEF--DDDAGVLVLTGAGDAWSAGMDLKEYFRETDAQPEILQERIRREAYGWWRR 99 (275)
T ss_pred EecCcccccCCCHHHHHHHHHHHHHHHh--CCCceEEEEEcCCCceecCcCHHHHhhccccchhHHHHHHHHHHHHHHHH
Confidence 4555544455566677777777765443 455 4544 455554320 000000000 0 112234555
Q ss_pred HHhcCCCEEEEeC
Q psy8693 102 VKRYNLPFLMVGG 114 (282)
Q Consensus 102 ~~~~~~~~~~v~e 114 (282)
+..+.+|+|...-
T Consensus 100 l~~~~kPvIAav~ 112 (275)
T PRK09120 100 LRWYQKPTIAMVN 112 (275)
T ss_pred HHhCCCCEEEEEc
Confidence 6678899987654
No 245
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=20.70 E-value=3.9e+02 Score=25.20 Aligned_cols=24 Identities=17% Similarity=0.470 Sum_probs=14.6
Q ss_pred HhcCCCEEEEeCCCCC-cChhHHHHHH
Q psy8693 103 KRYNLPFLMVGGGGYT-IRNVSRCWTY 128 (282)
Q Consensus 103 ~~~~~~~~~v~eGGY~-~~~~~~~~~~ 128 (282)
+..+.| ++..||.. ...+++|...
T Consensus 198 ~~~~ip--VIAdGGI~~~~Di~KaLa~ 222 (326)
T PRK05458 198 KAARKP--IIADGGIRTHGDIAKSIRF 222 (326)
T ss_pred HHcCCC--EEEeCCCCCHHHHHHHHHh
Confidence 334556 45678874 4567777654
No 246
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=20.63 E-value=1.1e+02 Score=27.44 Aligned_cols=19 Identities=11% Similarity=0.183 Sum_probs=16.5
Q ss_pred HHHHHHHcCCCEEEEecCC
Q psy8693 244 ISKVMETFQPSAVVLQCGA 262 (282)
Q Consensus 244 ~~~~~~~f~P~~ivvsaG~ 262 (282)
+...+.+.+||+|+|..|+
T Consensus 149 i~~~I~~s~~dil~VglG~ 167 (243)
T PRK03692 149 LFERIHASGAKIVTVAMGS 167 (243)
T ss_pred HHHHHHhcCCCEEEEECCC
Confidence 5577789999999999995
No 247
>PRK07657 enoyl-CoA hydratase; Provisional
Probab=20.56 E-value=3.8e+02 Score=23.82 Aligned_cols=79 Identities=15% Similarity=0.168 Sum_probs=38.2
Q ss_pred EEeecCCCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCC-C-CCCCcCCCC-CCCH-------HHHHHHHHHHHhcC
Q psy8693 37 AVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGAD-S-LTGDRLGCF-NLTV-------RGHGKCVEFVKRYN 106 (282)
Q Consensus 37 ~~NiPl~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D-~-~~~Dplg~~-~lt~-------~~~~~~~~~~~~~~ 106 (282)
++|=|=...+=+.+.+..+.+.+..+-+.-...+||+...-+ . -.|--+..+ ..+. ..+..+.+.+..+.
T Consensus 18 tlnrp~~~Nal~~~~~~~l~~al~~~~~d~~v~~vVl~g~g~~~F~aG~Dl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 97 (260)
T PRK07657 18 TLNRPRAANALSLALLEELQNILTQINEEANVRVVILTGAGEKAFCAGADLKERAGMNEEQVRHAVSLIRTTMEMVEQLP 97 (260)
T ss_pred EEeCCcccCCCCHHHHHHHHHHHHHHHhCCCeEEEEEecCCCCceEcCcChHhhhcCChhhHHHHHHHHHHHHHHHHhCC
Confidence 345443344556677777777776554433334555544222 1 111111111 0111 11233455566778
Q ss_pred CCEEEEeCC
Q psy8693 107 LPFLMVGGG 115 (282)
Q Consensus 107 ~~~~~v~eG 115 (282)
+|+|....|
T Consensus 98 kPvIaav~G 106 (260)
T PRK07657 98 QPVIAAING 106 (260)
T ss_pred CCEEEEEcC
Confidence 999876644
No 248
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=20.53 E-value=1.8e+02 Score=28.35 Aligned_cols=50 Identities=20% Similarity=0.315 Sum_probs=35.5
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHcCCCEEEEecCCCCCC----------CCcCCCCCCCHHHHHHH
Q psy8693 43 RDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLT----------GDRLGCFNLTVRGHGKC 98 (282)
Q Consensus 43 ~~g~~d~~y~~~~~~~l~~~~~~f~Pd~ivv~~G~D~~~----------~Dplg~~~lt~~~~~~~ 98 (282)
-.|.++++|...+++++ ..+|+ |++-.|.|... ..-.|....|..|..++
T Consensus 87 ~~~~~~~ey~~~~~~~l-----~~~p~-~iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttGv~rl 146 (406)
T TIGR00936 87 WRGETNEEYYWAIEQVL-----DHEPN-IIIDDGADLIFLLHTERPELLEKIIGGSEETTTGVIRL 146 (406)
T ss_pred ecCCCHHHHHHHHHHHh-----cCCCC-EEEecccHHHHHHHHhhhhhhhccEEEeecchHHHHHH
Confidence 46888899988776665 47997 55788888654 23467778888886654
No 249
>cd07392 MPP_PAE1087 Pyrobaculum aerophilum PAE1087 and related proteins, metallophosphatase domain. PAE1087 is an uncharacterized Pyrobaculum aerophilum protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordina
Probab=20.53 E-value=3.8e+02 Score=21.63 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=25.8
Q ss_pred HHHcCCCEEEEecCCCCCCCCcCCCCCCCHHHHHHHHHHHHhcCCCEEEEeC
Q psy8693 63 METFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGG 114 (282)
Q Consensus 63 ~~~f~Pd~ivv~~G~D~~~~Dplg~~~lt~~~~~~~~~~~~~~~~~~~~v~e 114 (282)
+++-+||+||++ || +... -+.+.+..+ +.+++.+.|+.+|.|
T Consensus 19 ~~~~~~D~vv~~-------GD-l~~~-~~~~~~~~~-~~l~~~~~p~~~v~G 60 (188)
T cd07392 19 LKAEEADAVIVA-------GD-ITNF-GGKEAAVEI-NLLLAIGVPVLAVPG 60 (188)
T ss_pred hhccCCCEEEEC-------CC-ccCc-CCHHHHHHH-HHHHhcCCCEEEEcC
Confidence 456789988853 34 2221 234455555 777778888877654
No 250
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=20.25 E-value=5.5e+02 Score=22.55 Aligned_cols=36 Identities=8% Similarity=0.116 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCcChhHHHHH
Q psy8693 92 VRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWT 127 (282)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~v~eGGY~~~~~~~~~~ 127 (282)
.+-+.++.+.+++++.+.|++..|.+......++|.
T Consensus 83 ~~~l~~~i~~A~~lGa~~vv~h~g~~~~~~~e~~~~ 118 (273)
T smart00518 83 IERLIDEIKRCEELGIKALVFHPGSYLKQSKEEALN 118 (273)
T ss_pred HHHHHHHHHHHHHcCCCEEEEccccccCCCHHHHHH
Confidence 344555666777788888887777663323344443
No 251
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=20.02 E-value=3.7e+02 Score=25.25 Aligned_cols=50 Identities=12% Similarity=0.092 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHh---cCCCEEEEe-CCCCCcCh------hHHHHHHHHHHHcCCCCc
Q psy8693 90 LTVRGHGKCVEFVKR---YNLPFLMVG-GGGYTIRN------VSRCWTYETSVALGSEIA 139 (282)
Q Consensus 90 lt~~~~~~~~~~~~~---~~~~~~~v~-eGGY~~~~------~~~~~~~~~~~~~g~~~~ 139 (282)
+++++|+++.++++- ++.|+|.+. ..|+.+.. .++..+..+..+....+|
T Consensus 132 ~~p~g~rKa~R~m~lA~~f~iPvVtlvDTpGa~~g~~aE~~G~~~aia~~l~a~s~~~VP 191 (316)
T TIGR00513 132 PAPEGYRKALRLMKMAERFKMPIITFIDTPGAYPGIGAEERGQSEAIARNLREMARLGVP 191 (316)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 678999998877654 599988776 45555432 244445555555554444
Done!