RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8693
(282 letters)
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 364
Score = 192 bits (489), Expect = 6e-60
Identities = 69/165 (41%), Positives = 112/165 (67%)
Query: 23 HDKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTG 82
D D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ GAD++ G
Sbjct: 199 GDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLGADTIAG 258
Query: 83 DRLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANEL 142
D + FN+T G GKC++++ ++ L L++GGGGY + N +RCWTY T V LG +++E+
Sbjct: 259 DPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEI 318
Query: 143 PYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
P +++F +GPD+ L I+PS ++N P +++I + NL+ +
Sbjct: 319 PDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV 363
Score = 59.0 bits (142), Expect = 1e-10
Identities = 33/79 (41%), Positives = 48/79 (60%)
Query: 202 GPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCG 261
G D+G GKG+YY+VN+P++DG+ DE Y I ++ +V + F P AVVLQ G
Sbjct: 193 GFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQAFNPKAVVLQLG 252
Query: 262 ADSLTGDRLGCFNLTVRDC 280
AD++ GD + FN+T
Sbjct: 253 ADTIAGDPMCSFNMTPVGI 271
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId:
63363]}
Length = 372
Score = 129 bits (324), Expect = 1e-35
Identities = 44/166 (26%), Positives = 68/166 (40%), Gaps = 4/166 (2%)
Query: 24 DKQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTGD 83
++IG GKGK Y +NIPL G++D + + V E F+P +LQ G D L D
Sbjct: 203 FLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSLEIVKEVFEPEVYLLQLGTDPLLED 262
Query: 84 RLGCFNLTVRGHGKCVEFVKRYNLPFLMVGGGGYTIRNVSRCWTYETSVALGSEIANELP 143
L FNL+ K V+ + +GGGGY ++R WT G E+ +L
Sbjct: 263 YLSKFNLSNVAFLKAFNIVREVFGEGVYLGGGGYHPYALARAWTLIWCELSGREVPEKLN 322
Query: 144 YNDYFEYFGPDFKL----HISPSNMANQNTPEYLEKIKTRLFENLR 185
DF+ + P +++ + + L
Sbjct: 323 NKAKELLKSIDFEEFDDEVDRSYMLETLKDPWRGGEVRKEVKDTLE 368
Score = 59.9 bits (144), Expect = 6e-11
Identities = 29/96 (30%), Positives = 41/96 (42%)
Query: 185 RMLPHAPGVQVQVSPIIGPILWYDPYQDIGAGKGKYYAVNIPLRDGMDDESYESIFVPII 244
+ + SP ++IG GKGK Y +NIPL G++D + +
Sbjct: 179 YDTDQVFVLSLHQSPEYAFPFEKGFLEEIGEGKGKGYNLNIPLPKGLNDNEFLFALEKSL 238
Query: 245 SKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRDC 280
V E F+P +LQ G D L D L FNL+
Sbjct: 239 EIVKEVFEPEVYLLQLGTDPLLEDYLSKFNLSNVAF 274
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 109 bits (273), Expect = 2e-28
Identities = 29/171 (16%), Positives = 61/171 (35%), Gaps = 22/171 (12%)
Query: 24 DKQDIGAGKGKYYAVNIPLRD----GMDDESYESIFVPIISKVMETFQPSAVVLQCGADS 79
++GAG G+ + VN+ M D Y + F ++ + F P V++ G D+
Sbjct: 229 AVDEVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDA 288
Query: 80 LTGD--RLGCFNLTVRGHGKCVEFVKRY-NLPFLMVGGGGYTIRNVSRCWTYETSVALGS 136
G LG ++++ + G + + ++ GG+ + + + LG+
Sbjct: 289 AEGHPAPLGGYHVSAKCFGYMTQQLMNLAGGAVVLALEGGHDLTAICDASEACVAALLGN 348
Query: 137 EIANELPYNDYFEYFGPDFKLHISPSNMANQNTPEYLEKIKTRLFENLRML 187
+ P ++ P N N LE + + +
Sbjct: 349 RVD---PLSEEGWKQKP------------NLNAIRSLEAVIRVHSKYWGCM 384
Score = 59.6 bits (143), Expect = 8e-11
Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 6/75 (8%)
Query: 212 DIGAGKGKYYAVNIPLRD----GMDDESYESIFVPIISKVMETFQPSAVVLQCGADSLTG 267
++GAG G+ + VN+ M D Y + F ++ + F P V++ G D+ G
Sbjct: 232 EVGAGSGEGFNVNVAWAGGLDPPMGDPEYLAAFRIVVMPIAREFSPDLVLVSAGFDAAEG 291
Query: 268 D--RLGCFNLTVRDC 280
LG ++++ +
Sbjct: 292 HPAPLGGYHVSAKCF 306
>d2qswa1 d.58.18.13 (A:256-345) Methionine import ATP-binding
protein MetN2 {Enterococcus faecalis [TaxId: 1351]}
Length = 90
Score = 27.0 bits (60), Expect = 0.99
Identities = 9/43 (20%), Positives = 19/43 (44%)
Query: 52 ESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRG 94
E +PIIS +++ +Q ++Q +G + + G
Sbjct: 23 EQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLLG 65
Score = 24.3 bits (53), Expect = 7.6
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 237 ESIFVPIISKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVR 278
E +PIIS +++ +Q ++Q +G + +
Sbjct: 23 EQAKLPIISHIVQEYQVEVSIIQGNIQQTKQGAVGSLYIQLL 64
>d2gvia1 d.81.3.1 (A:1-168) Uncharacterized protein Ta1109
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 168
Score = 25.3 bits (55), Expect = 6.3
Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 11/67 (16%)
Query: 35 YYAVNIPLRD-GMDDESYESIFVPIISKVMETFQPSAVVLQCGADS---LTGDRLGCFNL 90
Y A + L+ G++ E ++ + C D TG G
Sbjct: 27 YRAGSYALKIAGLEKEKDHRTYLLSEMSPEDMNG-------CFNDGAQAATGCTYGKGLF 79
Query: 91 TVRGHGK 97
++ G+GK
Sbjct: 80 SLLGYGK 86
>d1crba_ b.60.1.2 (A:) Cellular retinol-binding protein II (CRBP)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 134
Score = 24.8 bits (54), Expect = 7.6
Identities = 9/33 (27%), Positives = 12/33 (36%)
Query: 114 GGGYTIRNVSRCWTYETSVALGSEIANELPYND 146
G IR +S Y +G E +L D
Sbjct: 46 GDHMIIRTLSTFRNYIMDFQVGKEFEEDLTGID 78
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1,
Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 76
Score = 23.9 bits (51), Expect = 8.4
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 60 SKVMETFQPSAVVLQCGADSLTGDRLGCFNLTVRGHGKCV 99
S E + P+A+ C + C HG CV
Sbjct: 6 SGECEVYDPNALYCICRQPHNNRFMICCDRCEEWFHGDCV 45
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.140 0.435
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,097,199
Number of extensions: 51821
Number of successful extensions: 128
Number of sequences better than 10.0: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 18
Length of query: 282
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 198
Effective length of database: 1,254,276
Effective search space: 248346648
Effective search space used: 248346648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.3 bits)