RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy8696
(212 letters)
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 41.2 bits (97), Expect = 8e-06
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 179 NLLIHERTHTDERPYSCDICGKAFRR 204
NL H RTHT E+PY C +CGK+F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 37.9 bits (88), Expect = 8e-04
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 6/56 (10%)
Query: 158 ASRPKKQFICKFCNRQFTKSYNLLIHER--THTDERPYSCDICGKAFRRQDHLRDH 211
S+ ++C C F+ S +L H R H+ C +CGK FR D DH
Sbjct: 67 TSKAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK----VCPVCGKEFRNTDSTLDH 118
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA
carboxylase.
Length = 274
Score = 35.2 bits (81), Expect = 0.013
Identities = 13/55 (23%), Positives = 23/55 (41%)
Query: 81 AAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSS 135
A A +++ P PPH++ P + P P S+P + + P P +
Sbjct: 140 ALPQPPPPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPK 194
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 31.5 bits (72), Expect = 0.017
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 166 ICKFCNRQFTKSYNLLIHERTH 187
C C + F++ NL H RTH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 30.4 bits (69), Expect = 0.051
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 194 SCDICGKAFRRQDHLRDHR 212
C CGK+F R+ +L+ H
Sbjct: 1 KCPDCGKSFSRKSNLKRHL 19
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 30.9 bits (70), Expect = 0.031
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 165 FICKFCNRQFTKSYNLLIHERTH 187
+ C C + F L H RTH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.4 bits (66), Expect = 0.13
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
Y C CGK F+ + LR+H
Sbjct: 1 YRCPECGKVFKSKSALREH 19
>gnl|CDD|215613 PLN03174, PLN03174, Chalcone-flavanone isomerase-related;
Provisional.
Length = 278
Score = 33.3 bits (76), Expect = 0.066
Identities = 27/86 (31%), Positives = 29/86 (33%), Gaps = 13/86 (15%)
Query: 72 ALREEAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGS-----NPSTSSS 126
A A AAA AAAAAA+ PPH L N + P S S
Sbjct: 21 AAAAAVAAAAAAAAAAAAAIAASRN-PPHPFLQNALNFHNSSSPPWASISLADPSPPSVV 79
Query: 127 FPFPGSSSSLFPGTSSTHSHLDRRLL 152
G S FP RRLL
Sbjct: 80 ESKTGVS---FPAEIGD----SRRLL 98
>gnl|CDD|204841 pfam12171, zf-C2H2_jaz, Zinc-finger double-stranded RNA-binding.
This domain family is found in archaea and eukaryotes,
and is approximately 30 amino acids in length. The
mammalian members of this group occur multiple times
along the protein, joined by flexible linkers, and are
referred to as JAZ - dsRNA-binding ZF protein -
zinc-fingers. The JAZ proteins are expressed in all
tissues tested and localise in the nucleus, particularly
the nucleolus. JAZ preferentially binds to
double-stranded (ds) RNA or RNA/DNA hybrids rather than
DNA. In addition to binding double-stranded RNA, these
zinc-fingers are required for nucleolar localisation.
Length = 27
Score = 29.9 bits (68), Expect = 0.086
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 164 QFICKFCNRQFTKSYNLLIHERT 186
QF C C++ F L H ++
Sbjct: 1 QFYCVACDKYFKSENALENHLKS 23
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 32.4 bits (73), Expect = 0.20
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 94 PHPTPPHS--LLDGLPNTSSPYGFPPGSNPSTS----SSFPFPGSSSSLFPGTSSTHSH 146
+ P+S + PN+++PY PP SNP S S+ P+ + S P +S+ H
Sbjct: 423 GYNNAPNSNTPYNNPPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAKDHH 481
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 28.4 bits (63), Expect = 0.24
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 165 FICKFCNRQFTKSYNLLIHERTH 187
F C C + F+ L H R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 27.6 bits (61), Expect = 0.48
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 193 YSCDICGKAFRRQDHLRDHR 212
+ C +CGK+F +D L+ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHL 20
>gnl|CDD|222704 pfam14353, CpXC, CpXC protein. This presumed domain is
functionally uncharacterized. This domain is found in
bacteria and archaea, and is typically between 122 and
134 amino acids in length. It contains four conserved
cysteines forming two CpXC motifs.
Length = 128
Score = 30.4 bits (69), Expect = 0.28
Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 9/46 (19%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERP---------YSCDICGKAFR 203
C C +F ++ + R ++C CG FR
Sbjct: 4 CPSCGHEFEAEVWTSVNADEDPELREAILDGTLFTFTCPSCGHEFR 49
>gnl|CDD|218608 pfam05495, zf-CHY, CHY zinc finger. This family of domains are
likely to bind to zinc ions. They contain many conserved
cysteine and histidine residues. We have named this
domain after the N-terminal motif CXHY. This domain can
be found in isolation in some proteins, but is also
often associated with pfam00097. One of the proteins in
this family is a mitochondrial intermembrane space
protein called Hot13. This protein is involved in the
assembly of small TIM complexes.
Length = 74
Score = 28.4 bits (64), Expect = 0.68
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 7/43 (16%)
Query: 161 PKKQFICKFCNRQFTKS-YNLLIHERTHTDERPYSCDICGKAF 202
K +C C + T YN + Y C IC F
Sbjct: 38 NVKAVLCGVCRTEQTVQEYN------CGVEFADYYCPICKLFF 74
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component
[Chromatin structure and dynamics].
Length = 1163
Score = 30.7 bits (69), Expect = 0.74
Identities = 24/107 (22%), Positives = 32/107 (29%), Gaps = 22/107 (20%)
Query: 89 AAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSSLFPGTSSTHSHLD 148
AM +P PPH T S P +PS S S + P
Sbjct: 2 DAMNVPVD-PPHDNPGDKVMTGSLKQISPKYHPSMSRDHDVNTSLQNSEPW--------- 51
Query: 149 RRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
G A +P + + SY + ER+ T R Y
Sbjct: 52 ----PDNGSARKPSY-------SPESMSSYGGPMDERSGT-RRYYED 86
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 26.8 bits (60), Expect = 0.86
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 193 YSCDICGKAFRRQDHLRDHR 212
++C +CGK F L H+
Sbjct: 2 HTCGVCGKTFSSLQALGGHK 21
Score = 24.5 bits (54), Expect = 6.6
Identities = 6/23 (26%), Positives = 11/23 (47%)
Query: 165 FICKFCNRQFTKSYNLLIHERTH 187
C C + F+ L H+++H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 30.0 bits (67), Expect = 0.94
Identities = 30/122 (24%), Positives = 44/122 (36%), Gaps = 14/122 (11%)
Query: 96 PTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSSLFPGTSSTHSHLDRRLLRAP 155
T L + SP + S++S P ++ +S S
Sbjct: 229 LTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASSQSSSPNESDS-------- 280
Query: 156 GRASRPKKQFICKFCNRQFTKSYNLLIHERT--HTDE--RPYSCDI--CGKAFRRQDHLR 209
K CN F++S L H R+ H+ E +P+SC CGK F R D L+
Sbjct: 281 SSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALK 340
Query: 210 DH 211
H
Sbjct: 341 RH 342
Score = 27.4 bits (60), Expect = 6.0
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
C++ F + YNL+ H++ HT+ P C I FRR L +H
Sbjct: 417 YNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCSILKS-FRRDLDLSNH 464
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 29.8 bits (67), Expect = 1.0
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 4/44 (9%)
Query: 57 GDELMAMMADKRKELALREEAACVAAAHAAAAAAMLLPHPTPPH 100
L A +A R+EL EA A AA+ P+PP
Sbjct: 661 VPLLKAELAALRRELMEAAEARDAVAEEPHTIAAL----PSPPR 700
>gnl|CDD|214448 MTH00173, ATP6, ATP synthase F0 subunit 6; Provisional.
Length = 231
Score = 29.4 bits (67), Expect = 1.1
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)
Query: 112 PYGFPPGSNPSTSSSFPFP----GSSSSLFPGTSSTHSHL 147
P+ F S+ + + S P S LF S + + L
Sbjct: 92 PFVFSVTSHLAFTFSLALPLWLSLILSGLFYNPSKSLAGL 131
>gnl|CDD|205121 pfam12874, zf-met, Zinc-finger of C2H2 type. This is a zinc-finger
domain with the CxxCx(12)Hx(6)H motif, found in multiple
copies in a wide range of proteins from plants to
metazoans. Some member proteins, particularly those from
plants, are annotated as being RNA-binding.
Length = 25
Score = 26.3 bits (59), Expect = 1.2
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 165 FICKFCNRQFTKSYNLLIHER 185
F C+ CN FT L H R
Sbjct: 1 FYCELCNVTFTSESQLKSHLR 21
Score = 25.2 bits (56), Expect = 3.1
Identities = 5/19 (26%), Positives = 10/19 (52%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
+ C++C F + L+ H
Sbjct: 1 FYCELCNVTFTSESQLKSH 19
>gnl|CDD|233134 TIGR00802, nico, high-affinity nickel-transporter, HoxN/HupN/NixA
family. This family is found in both Gram-negative and
Gram-positive bacteria. The functionally characterized
members of the family catalyze uptake of either Ni2+ or
Co2+ in a proton motive force-dependent process.
Topological analyses with the HoxN Ni2+ transporter of
Ralstonia eutropha (Alcaligenes eutrophus) suggest that
it possesses 8 TMSs with its N- and C-termini in the
cytoplasm [Transport and binding proteins, Cations and
iron carrying compounds].
Length = 280
Score = 29.3 bits (66), Expect = 1.4
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 49 TRSIHMYQGDELMAMMADKRKELALREEAACVAAAHAAAAAAMLLP 94
T+S HMY L + D E+AL +A AA + AA + LP
Sbjct: 140 TKSWHMYPVGFLFGLGFDTATEVALLGLSASAAARGLSIAAVLSLP 185
>gnl|CDD|112890 pfam04094, DUF390, Protein of unknown function (DUF390). This is a
family of long proteins currently only found in the rice
genome. They have no known function. However they may be
some kind of transposable element.
Length = 843
Score = 29.4 bits (65), Expect = 1.7
Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 5/89 (5%)
Query: 74 REEAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSS 133
E AA AA AA A L P P+ + G G +PS + P
Sbjct: 293 DEAAATSEAARDEAAGAQLAPDPSGDAAATTSEAAGDEAAGALLGPDPS-GDAQDEPAPG 351
Query: 134 SSLFPGTS----STHSHLDRRLLRAPGRA 158
+ GTS S + RRL P A
Sbjct: 352 GAPDSGTSIGGPSRAAPSPRRLFPLPSAA 380
>gnl|CDD|133420 cd00704, MDH, Malate dehydrogenase. Malate dehydrogenase (MDH) is
one of the key enzymes in the citric acid cycle,
facilitating both the conversion of malate to
oxaloacetate and replenishing levels of oxalacetate by
reductive carboxylation of pyruvate. MDHs belong to the
NAD-dependent, lactate dehydrogenase (LDH)-like,
2-hydroxycarboxylate dehydrogenase family, which also
includes the GH4 family of glycoside hydrolases. They
are part of the NAD(P)-binding Rossmann fold
superfamily, which includes a wide variety of protein
families including the NAD(P)-binding domains of alcohol
dehydrogenases, tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate dehydrogenases,
formate/glycerate dehydrogenases, siroheme synthases,
6-phosphogluconate dehydrogenases, aminoacid
dehydrogenases, repressor rex, and NAD-binding potassium
channel domains, among others.
Length = 323
Score = 28.8 bits (65), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 4/48 (8%)
Query: 82 AAHAAAAAAMLLPHPTPPHSLLD-GLPNTSSPYGFPPG---SNPSTSS 125
AA A A TPP ++ G+ + +PYG PPG S P T
Sbjct: 241 AAKAIADHVKDWLFGTPPGEIVSMGVYSPGNPYGIPPGIVFSFPCTCK 288
>gnl|CDD|221827 pfam12881, NUT_N, NUT protein N terminus. This family includes the
NUT protein. The gene encoding for NUT protein (Nuclear
Testis protein) is found fused to BRD3 or BRD4 genes, in
some aggressive types of carcinoma, due to chromosomal
translocations. Proteins of the BRD family contain two
bromodomains that bind transcriptionally active
chromatin through associations with acetylated histones
H3 and H4. Such proteins are crucial for the regulation
of cell cycle progression. On the other hand, little is
known about NUT protein. NUT is known to have a Nuclear
Export Sequence (NES) as well as a Nuclear Localization
Signal (NLS), both located towards the C-terminal end of
the protein. A fused NUT-GFP protein showed either
cytoplasmic or nuclear localization, suggesting that it
is subject to nuclear/cytoplasmic shuttling. Consistent
with this possibility, treatment with leptomycin B an
inhibitor of CRM1-dependent nuclear export resulted in
re-distribution of NUT-GFP to the nucleus. Inspection of
NUT revealed a C-terminal sequence similar to known
nuclear export sequences (NES) which are often regulated
by phosphorylation.
Length = 328
Score = 28.8 bits (64), Expect = 2.1
Identities = 16/44 (36%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 87 AAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFP 130
AA L P P PP P GF PG NP S+ P
Sbjct: 19 AALPFLPPAPQPPDQPFWEPPPPLVTAGFSPG-NPLVLSALPSM 61
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 28.5 bits (64), Expect = 3.0
Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 3/44 (6%)
Query: 56 QGDELMAMMAD---KRKELALREEAACVAAAHAAAAAAMLLPHP 96
+ + ++AD + EEA + A AAAA +
Sbjct: 413 RSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGIYDS 456
>gnl|CDD|215130 PLN02217, PLN02217, probable pectinesterase/pectinesterase
inhibitor.
Length = 670
Score = 28.5 bits (63), Expect = 3.0
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 7/66 (10%)
Query: 87 AAAAMLLPHPTPPHSLLDGLPNTS----SPYGFPPGSN---PSTSSSFPFPGSSSSLFPG 139
+ + ++ P +PP L P T SP PP S+ PST+ S P +
Sbjct: 588 SPSTVVAPSTSPPAGHLGSPPATPSKIVSPSTSPPASHLGSPSTTPSSPESSIKVASTET 647
Query: 140 TSSTHS 145
S S
Sbjct: 648 ASPESS 653
>gnl|CDD|130820 TIGR01759, MalateDH-SF1, malate dehydrogenase. This model
represents a family of malate dehydrogenases in bacteria
and eukaryotes which utilize either NAD or NADP
depending on the species and context. MDH interconverts
malate and oxaloacetate and is a part of the citric acid
cycle as well as the C4 cycle in certain photosynthetic
organisms.
Length = 323
Score = 28.4 bits (64), Expect = 3.0
Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 5/87 (5%)
Query: 44 VPVVPTRSIHMYQGDELMAMMADKRKE-LALREEAACVAAAHAAAAAAMLLPHPTPPHSL 102
PV + E + + + + R ++ +AA+AA TP
Sbjct: 202 RPVKEVIKDDKWLEGEFIPTVQQRGAAVIEARGASSAASAANAAIDHVRDWVTGTPEGDW 261
Query: 103 LD-GLPNTSSPYGFPPG---SNPSTSS 125
+ G+ + +PYG P G S P T
Sbjct: 262 VSMGVYSDGNPYGIPEGIIFSFPVTCK 288
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 700
Score = 28.3 bits (63), Expect = 3.8
Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 6/94 (6%)
Query: 65 ADKRKELALREEAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTS 124
AD A A A AAAA + P PP + GLP+ G P+ +
Sbjct: 532 ADPDDAFETLAPAPAAAPAPRAAAATEPVVAPRPPRASASGLPDMF------DGDWPALA 585
Query: 125 SSFPFPGSSSSLFPGTSSTHSHLDRRLLRAPGRA 158
+ P G + L + D LR P A
Sbjct: 586 ARLPVRGLAQQLARQSELAGVEGDTVRLRVPVPA 619
Score = 27.1 bits (60), Expect = 7.4
Identities = 14/57 (24%), Positives = 19/57 (33%)
Query: 77 AACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSS 133
AA A A AAA PP L + +P + S P P ++
Sbjct: 476 AAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDAAPAGWVAESIPDPATA 532
>gnl|CDD|234615 PRK00075, cbiD, cobalt-precorrin-6A synthase; Reviewed.
Length = 361
Score = 27.5 bits (62), Expect = 5.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 78 ACVAAAHAAAAAAMLLPHPTPPHSLLDGLPN 108
+C AAA A AA LL P +D LP
Sbjct: 17 SCAAAA-AKAALLALLTGEFPDTVEID-LPK 45
>gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in
CspA-like proteins. GSP (germination-specific protease)
converts the spore peptidoglycan hydrolase (SleC)
precursor to an active enzyme during germination of
Clostridium perfringens S40 spores. Analysis of an
enzyme fraction of GSP showed that it was composed of a
gene cluster containing the processed forms of products
of cspA, cspB, and cspC which are positioned in a tandem
array just upstream of the 5' end of sleC. The amino
acid sequences deduced from the nucleotide sequences of
the csp genes showed significant similarity and showed a
high degree of homology with those of the catalytic
domain and the oxyanion binding region of
subtilisin-like serine proteases. Members of the
peptidases S8 and S35 clan include endopeptidases,
exopeptidases and also a tripeptidyl-peptidase. The S8
family has an Asp/His/Ser catalytic triad similar to
that found in trypsin-like proteases, but do not share
their three-dimensional structure and are not homologous
to trypsin. The S53 family contains a catalytic triad
Glu/Asp/Ser. The stability of these enzymes may be
enhanced by calcium, some members have been shown to
bind up to 4 ions via binding sites with different
affinity. Some members of this clan contain disulfide
bonds. These enzymes can be intra- and extracellular,
some function at extreme temperatures and pH values.
Length = 455
Score = 27.6 bits (62), Expect = 5.6
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 80 VAAAHAAAAAAMLL 93
VAAA A A A+LL
Sbjct: 401 VAAAIVAGACALLL 414
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 27.7 bits (61), Expect = 6.0
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 5/50 (10%)
Query: 166 ICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKA----FRRQDHLRDH 211
+C FC F L H R E + CD+ G F+ + L H
Sbjct: 222 LCIFCKIYFYDDDELRRHCRLR-HEACHICDMVGPIRYQYFKSYEDLEAH 270
>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 624
Score = 27.7 bits (61), Expect = 6.1
Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 5/88 (5%)
Query: 74 REEAACVAAAHAAAAAAMLLPHPT---PPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFP 130
+ AA ++AA P P+ P D P G PP P + P P
Sbjct: 404 GPQGTAPAAGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRMPEASPVP 463
Query: 131 G--SSSSLFPGTSSTHSHLDRRLLRAPG 156
G S + T P
Sbjct: 464 GAPDSVASASDAPPTLGDPSDTAEHTPS 491
>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family. Subtilases are a family
of serine proteases. They appear to have independently
and convergently evolved an Asp/Ser/His catalytic triad,
like that found in the trypsin serine proteases (see
pfam00089). Structure is an alpha/beta fold containing a
7-stranded parallel beta sheet, order 2314567.
Length = 277
Score = 27.3 bits (61), Expect = 6.3
Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 4/43 (9%)
Query: 81 AAAHAAAAAAMLL---PHPTPPHSLLDGLPNTSSPYGFPPGSN 120
AA A AAA+LL P T P +L L T++ G
Sbjct: 222 AAPLVAGAAALLLSANPSLT-PETLRALLVTTATDLGSMGLDR 263
>gnl|CDD|145910 pfam03012, PP_M1, Phosphoprotein. This family includes the M1
phosphoprotein non-structural RNA polymerase alpha
subunit, which is thought to be a component of the
active polymerase, and may be involved in template
binding.
Length = 298
Score = 27.4 bits (61), Expect = 6.4
Identities = 11/53 (20%), Positives = 16/53 (30%)
Query: 96 PTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSSLFPGTSSTHSHLD 148
P PP + + P P S S SS + +S L+
Sbjct: 134 PKPPGKSTEDKSTQTDPEKSKPASQSSAPVKKEEQSSSEKVDSQEASGPPALE 186
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp. strain
PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria, where
myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed to
myxoxanthophyll [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 492
Score = 27.4 bits (61), Expect = 6.8
Identities = 26/108 (24%), Positives = 37/108 (34%), Gaps = 30/108 (27%)
Query: 25 SLQMSNSPYHLLHRESS------AFVPVVPTR-----------SIHMYQGDELMAMMADK 67
LQM+ +P+ L H S V + +IH G ++ D
Sbjct: 214 VLQMAQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDS 273
Query: 68 RKELALREEAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGF 115
RK+ L +A V A PP SLL+ L P G+
Sbjct: 274 RKQEDLNVKADDVVAN-------------LPPQSLLELLGPLGLPPGY 308
>gnl|CDD|182485 PRK10472, PRK10472, low affinity gluconate transporter;
Provisional.
Length = 445
Score = 27.0 bits (60), Expect = 8.9
Identities = 11/16 (68%), Positives = 11/16 (68%)
Query: 83 AHAAAAAAMLLPHPTP 98
A AAAAA LLP P P
Sbjct: 149 AGVAAAAAFLLPGPAP 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.131 0.403
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,819,536
Number of extensions: 983305
Number of successful extensions: 1822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1787
Number of HSP's successfully gapped: 95
Length of query: 212
Length of database: 10,937,602
Length adjustment: 93
Effective length of query: 119
Effective length of database: 6,812,680
Effective search space: 810708920
Effective search space used: 810708920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.9 bits)