RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy8696
(212 letters)
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 77.9 bits (193), Expect = 4e-19
Identities = 45/50 (90%), Positives = 47/50 (94%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K+FICKFC R FTKSYNLLIHERTHTDERPY+CDIC KAFRRQDHLRDHR
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHR 65
Score = 64.8 bits (159), Expect = 5e-14
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + C C++ F + +L H H+ E+P+ C CGK F + L H+
Sbjct: 44 RPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHK 93
Score = 54.7 bits (133), Expect = 2e-10
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 177 SYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
S ++ + C CG+ F + +L H
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYNLLIHE 37
Score = 42.8 bits (102), Expect = 5e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C+ C + F +S L +H+ H +
Sbjct: 72 KPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 75.2 bits (186), Expect = 2e-18
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K F C+ C R F++S +L H RTHT E+P++CDICG+ F R D + HR
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHR 51
Score = 68.3 bits (168), Expect = 1e-15
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 1/50 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K F C C R+F +S H P D + + HL +
Sbjct: 30 KPFACDICGRKFARSDERKRHRDIQH-ILPILEDKVEELLSKNYHLENEV 78
Score = 33.2 bits (77), Expect = 0.009
Identities = 5/32 (15%), Positives = 10/32 (31%), Gaps = 3/32 (9%)
Query: 163 KQFICKFCNRQFTKSYNLLIHE---RTHTDER 191
+ +K+Y+L + ER
Sbjct: 57 LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 72.5 bits (179), Expect = 1e-17
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ F+C+ C R F + +L H R+HT+E+PY C +C +AF R+D L H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRH 49
Score = 41.7 bits (99), Expect = 4e-06
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 191 RPYSCDICGKAFRRQDHLRDHR 212
R + C++C +AF RQ+HL+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
Score = 31.7 bits (73), Expect = 0.022
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHE-RTHTDE 190
K + C CNR FT+ L+ H + H+
Sbjct: 29 KPYPCGLCNRAFTRRDLLIRHAQKIHSGN 57
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 72.5 bits (179), Expect = 3e-17
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K F C+ C R F++S +L H RTHT E+P++CDICG+ F R D + H
Sbjct: 33 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHT 82
Score = 69.0 bits (170), Expect = 7e-16
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + C C+R+F++S +L H R HT ++P+ C IC + F R DHL H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
Score = 39.0 bits (92), Expect = 8e-05
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDER 191
K F C C R+F +S H + H ++
Sbjct: 61 KPFACDICGRKFARSDERKRHTKIHLRQK 89
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 69.5 bits (171), Expect = 2e-16
Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERT--HTDERPYSCDICGKAFRRQDHLRDHR 212
+ CK C+R +T N H T + + Y C C K F R+D++ H
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHV 60
Score = 54.1 bits (131), Expect = 2e-10
Identities = 7/29 (24%), Positives = 11/29 (37%)
Query: 184 ERTHTDERPYSCDICGKAFRRQDHLRDHR 212
E T E Y C +C + + + H
Sbjct: 2 EFTKEGEHTYRCKVCSRVYTHISNFCRHY 30
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 142 STHSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHT 188
+ S+ R + + R + + C FC ++FT+ N+ H +
Sbjct: 21 THISNFCRHYVTSHKRNVKV---YPCPFCFKEFTRKDNMTAHVKIIH 64
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 68.6 bits (168), Expect = 7e-16
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTD---ERPYSCDICGKAFRRQDHLRDHR 212
C+ C + +L H+R H + + C+ CGK F + D + HR
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHR 58
Score = 46.2 bits (110), Expect = 2e-07
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDHR 212
+ C+ICG R++ L H+
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQ 27
Score = 42.0 bits (99), Expect = 7e-06
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERT-HTDERPYSCDICGKAF 202
+F C+FC ++F K ++ H H + G +
Sbjct: 37 LRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQESSGPSS 77
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 68.7 bits (169), Expect = 7e-16
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE--RPYSCDICGKAFRRQDHLRDH 211
K + C C+ +FT+S + +H E + C C R+ L H
Sbjct: 14 KPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVH 64
Score = 57.5 bits (140), Expect = 1e-11
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 179 NLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ RTH+ E+PY C IC F + ++ H
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHI 35
Score = 42.5 bits (101), Expect = 4e-06
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERT-HTDERPYS 194
+F C C+ + +L +H R H+ P S
Sbjct: 42 NVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 69.0 bits (170), Expect = 7e-16
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
CK C+ S +L H R H+DERP+ C IC A R L H
Sbjct: 39 CKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHL 84
Score = 65.9 bits (162), Expect = 1e-14
Identities = 15/46 (32%), Positives = 20/46 (43%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
C+ C + F++ L H R HT +PY C C A L H
Sbjct: 11 CEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHL 56
Score = 47.4 bits (114), Expect = 8e-08
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 186 THTDERPYSCDICGKAFRRQDHLRDHR 212
+ P+ C++CGK F R+D L+ H
Sbjct: 2 SSGSSGPHKCEVCGKCFSRKDKLKTHM 28
Score = 45.1 bits (108), Expect = 7e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ F C+ C S L +H R+HT + S
Sbjct: 63 RPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 69.1 bits (170), Expect = 7e-16
Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 163 KQFICK--FCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C C +F +S L H R HT RP+ C C +AF R DHL H
Sbjct: 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHLALHM 85
Score = 65.2 bits (160), Expect = 2e-14
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 162 KKQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDHR 212
C + C + +TKS +L H RTHT E+PY CD CG F R D L H
Sbjct: 3 TATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHY 57
Score = 35.6 bits (83), Expect = 0.001
Identities = 7/25 (28%), Positives = 10/25 (40%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDH 211
T CGK + + HL+ H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAH 26
Score = 33.7 bits (78), Expect = 0.007
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTH 187
+ F C+ C+R F++S +L +H + H
Sbjct: 64 RPFQCQKCDRAFSRSDHLALHMKRH 88
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 68.7 bits (169), Expect = 1e-15
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
C+ C + F Y+L H+ +H+ E+PYSC +CG F+R+D + H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
Score = 62.9 bits (154), Expect = 1e-13
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE--RPYSCDICGKAFRRQDHLRDH 211
K + C C +F + + H R+H +PY C CGK F R DHL H
Sbjct: 34 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGH 84
Score = 44.8 bits (107), Expect = 7e-07
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDHR 212
+ +C+ICGK FR HL H+
Sbjct: 2 SSGSSGVACEICGKIFRDVYHLNRHK 27
Score = 29.8 bits (68), Expect = 0.20
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHE-RTHTDER 191
K +IC+ C + F++ +L H + H+
Sbjct: 62 VGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 68.4 bits (168), Expect = 1e-15
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 163 KQFIC--KFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C + C+ +F +S L H R HT +P+ C +C ++F R DHL H
Sbjct: 44 KPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHM 95
Score = 66.5 bits (163), Expect = 8e-15
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 156 GRASRPKKQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
G ++ C + C + +TKS +L H RTHT E+PY C C F R D L H
Sbjct: 7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRH 66
Query: 212 R 212
Sbjct: 67 Y 67
Score = 38.0 bits (89), Expect = 2e-04
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTD 189
K F C CNR F++S +L +H + H +
Sbjct: 74 KPFQCGVCNRSFSRSDHLALHMKRHQN 100
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 174 FTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
S L R H + P C K + + HL+ H
Sbjct: 3 SGSSGPDLEKRRIHYCDYPG----CTKVYTKSSHLKAHL 37
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 68.7 bits (169), Expect = 2e-15
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C F C R+F++S L H+R HT +P+ C C + F R DHL+ H
Sbjct: 35 KPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHT 86
Score = 68.3 bits (168), Expect = 3e-15
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
K F CK C R+F++S +L H RTHT E+P+SC C K F R D L H
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 64.8 bits (159), Expect = 5e-14
Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)
Query: 163 KQFICK--FCNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
+ F+C CN+++ K +L +H R HT E+PY CD C + F R D L+ H
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH 57
Score = 37.1 bits (87), Expect = 7e-04
Identities = 8/26 (30%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 188 TDERPYSCD--ICGKAFRRQDHLRDH 211
+++RP+ C C K + + HL+ H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH 27
Score = 32.1 bits (74), Expect = 0.043
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTH 187
K F C++ C ++F +S L+ H H
Sbjct: 93 KPFSCRWPSCQKKFARSDELVRHHNMH 119
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 65.9 bits (162), Expect = 6e-15
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C C F NL H+ HT E+PY C+ICG F R +L+ H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
Score = 55.9 bits (136), Expect = 5e-11
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 177 SYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
++ H ++PY CD C +FR + +L H+
Sbjct: 2 GHHHHHHSHMTHSDKPYKCDRCQASFRYKGNLASHK 37
Score = 40.5 bits (96), Expect = 2e-05
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPY 193
K + C C QF + NL H R H+ E+PY
Sbjct: 44 KPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 67.1 bits (165), Expect = 7e-15
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
C C+++F Y L +H R HT E+P+ C CGK + R+++L +H
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
Score = 66.8 bits (164), Expect = 1e-14
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ F C C F + L +H +HT E PY C C + F ++ L+ H
Sbjct: 65 QVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSH 113
Score = 62.1 bits (152), Expect = 6e-13
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Query: 163 KQFICKFCNRQFTKSYNLLIHER---THTDERPYSCDICGKAFRRQDHLRDH 211
K F C C + + + NLL HE + E+ ++C +C + FRR+ LR H
Sbjct: 34 KPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLH 85
Score = 43.6 bits (104), Expect = 4e-06
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDH 211
+ C C K F + +L+ H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVH 26
Score = 30.2 bits (69), Expect = 0.21
Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIH-ERTHTDER 191
+ C C++QF + +L H + H+
Sbjct: 93 MPYKCSSCSQQFMQKKDLQSHMIKLHSGPS 122
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 65.9 bits (162), Expect = 9e-15
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
CK C + F +S L H H+D RPY C CGK F ++ ++ H
Sbjct: 4 CKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHT 49
Score = 64.8 bits (159), Expect = 2e-14
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + C++C ++F + ++ H HT E+P+ C +CGKAF + +L H
Sbjct: 28 RPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITH 76
Score = 32.4 bits (75), Expect = 0.017
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 193 YSCDICGKAFRRQDHLRDHR 212
+ C ICGK+F+R L H
Sbjct: 2 FDCKICGKSFKRSSTLSTHL 21
Score = 31.6 bits (73), Expect = 0.028
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHT 188
K C+ C + F++S NL+ H R HT
Sbjct: 56 KPHKCQVCGKAFSQSSNLITHSRKHT 81
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 65.1 bits (159), Expect = 2e-14
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 152 LRAPGRASRPKKQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDH 207
P S + IC C + + KS +L H RTHT E+P+SC C + F R D
Sbjct: 5 SSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDE 64
Query: 208 LRDHR 212
L HR
Sbjct: 65 LSRHR 69
Score = 28.9 bits (65), Expect = 0.28
Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTH 187
K F C + C R+F +S L H RTH
Sbjct: 46 KPFSCSWKGCERRFARSDELSRHRRTH 72
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 64.8 bits (159), Expect = 2e-14
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C C + F++S L+ H+R HT E+PY C CGKAF + L +H+
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 50.9 bits (123), Expect = 2e-09
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 180 LLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
H+ E+PY C CGKAF R L H+
Sbjct: 2 SSGSSGIHSGEKPYGCVECGKAFSRSSILVQHQ 34
Score = 38.6 bits (91), Expect = 8e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPY 193
K + C C + F+++ L+ H+R HT
Sbjct: 41 KPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 64.6 bits (158), Expect = 2e-14
Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 163 KQFIC--KFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + C + C+R+F++S L H R HT ++P+ C IC + F R DHL H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHI 69
Score = 41.5 bits (98), Expect = 9e-06
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 173 QFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDHR 212
+ NLL + RPY+C + C + F R D L H
Sbjct: 2 EPHPMNNLLNYVVPK--MRPYACPVESCDRRFSRSDELTRHI 41
Score = 36.1 bits (84), Expect = 7e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHT 188
K F C+ C R F++S +L H RTHT
Sbjct: 48 KPFQCRICMRNFSRSDHLTTHIRTHT 73
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 64.4 bits (158), Expect = 2e-14
Identities = 14/50 (28%), Positives = 22/50 (44%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
C C+ + L IHER H +RP+ C+ C ++ +L H
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHM 57
Score = 46.0 bits (110), Expect = 2e-07
Identities = 6/27 (22%), Positives = 10/27 (37%)
Query: 185 RTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + P C C + + LR H
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIH 28
Score = 33.6 bits (78), Expect = 0.005
Identities = 6/33 (18%), Positives = 12/33 (36%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ F C +C+ + NL H + +
Sbjct: 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGPS 68
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 64.4 bits (158), Expect = 3e-14
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+++ C C + F+ S +L H RTHT E+PY CD CGKAF ++ HL H
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGH 65
Score = 57.1 bits (139), Expect = 2e-11
Identities = 13/37 (35%), Positives = 16/37 (43%)
Query: 176 KSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
S + E + R Y CD CGK+F L HR
Sbjct: 2 SSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHR 38
Score = 37.8 bits (89), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPY 193
C C + F + +L+ H R HT P
Sbjct: 49 CDECGKAFIQRSHLIGHHRVHTGSGPS 75
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 64.6 bits (158), Expect = 3e-14
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Query: 165 FICKF--CNRQFTKSYNLLIHERTHTDERPYSCD--ICGKAFRRQDHLRDHR 212
++C F C + F K L +H+ +HT + PY C C K F L+ H
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 53
Score = 54.9 bits (133), Expect = 1e-10
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 2/52 (3%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ C C+++F+ L HE+ H D C + H
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHV 81
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 66.1 bits (162), Expect = 5e-14
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 162 KKQFICKFCN-----RQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
+K+F+C + R F Y L++H R HT E+P+ C C K++ R ++L+ H
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 64.2 bits (157), Expect = 2e-13
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSC--DICGKAFRRQDHLRDH 211
K C F C + +++ NL H R+HT E+PY C + C KAF H
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKH 118
Score = 61.5 bits (150), Expect = 2e-12
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 163 KQFICKF--CNRQFTKSYNLLIH-ERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
K ++C+ C++ F+ + + H RTH++E+PY C + C K + LR H
Sbjct: 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 56.1 bits (136), Expect = 2e-10
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 8/57 (14%)
Query: 163 KQFICKFCNRQFTKSYNLLIH---ERTHTDERPYSCDICG-----KAFRRQDHLRDH 211
C+++F L+ H E H + + + C G + F+ Q L H
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVH 58
Score = 38.3 bits (90), Expect = 4e-04
Identities = 7/22 (31%), Positives = 9/22 (40%)
Query: 190 ERPYSCDICGKAFRRQDHLRDH 211
E D C + F Q+ L H
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHH 22
Score = 34.9 bits (81), Expect = 0.006
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHT 188
K ++CK C +++T +L H +T
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 66.5 bits (163), Expect = 5e-14
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCD--ICGKAFRRQDHLRDH 211
K++IC F C + K++ L H HT E+P+ C C K F HL H
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH 63
Score = 63.4 bits (155), Expect = 7e-13
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
Query: 163 KQFICK--FCNRQFTKSYNLLIHERTHTDERPYSCD--ICGKAFRRQDHLRDHR 212
K F CK C + FT ++L H THT E+ ++CD C F + +++ H
Sbjct: 41 KPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 94
Score = 61.8 bits (151), Expect = 3e-12
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 170 CNRQFTKSYNLLIHERTHTDERPYSC--DICGKAFRRQDHLRDH 211
C + F K L +H+ +HT + PY C + C K F L+ H
Sbjct: 112 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH 155
Score = 57.6 bits (140), Expect = 1e-10
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 163 KQFICK--FCNRQFTKSYNLLIHERTHTDER--PYSCDI--CGKAFRRQDHLRDH 211
K F C C+ +FT N+ H + + Y C CGKAF++ + L+ H
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVH 125
Score = 51.1 bits (123), Expect = 2e-08
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 7/57 (12%)
Query: 163 KQFICK--FCNRQFTKSYNLLIHERTHT---DERPYSCDICGKAFR--RQDHLRDHR 212
+ C C+++F+ L HE+ H ++ SC GK + + H+
Sbjct: 133 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFVGKTWTLYLKHVAECHQ 189
Score = 49.1 bits (118), Expect = 1e-07
Identities = 7/31 (22%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 183 HERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
+ + Y C CG A+ + L+ H
Sbjct: 3 EKALPVVYKRYICSFADCGAAYNKNWKLQAH 33
Score = 26.0 bits (58), Expect = 7.1
Identities = 7/30 (23%), Positives = 10/30 (33%), Gaps = 2/30 (6%)
Query: 160 RPKKQFICKFCNRQFTKSYNLLIHERTHTD 189
KK C F + + + L H D
Sbjct: 163 PCKKDDSCSFVGKTW--TLYLKHVAECHQD 190
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 66.3 bits (163), Expect = 6e-14
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
K + C C + F++ NL H+RTHT E+PY C CGK+F R+D L H
Sbjct: 132 KPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 66.3 bits (163), Expect = 6e-14
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C C + F++ +L H+RTHT E+PY C CGK+F R+D+L H+
Sbjct: 104 KPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQ 153
Score = 65.9 bits (162), Expect = 9e-14
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C C + F++S +L H+RTHT E+PY C CGK+F + L H+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQ 69
Score = 64.8 bits (159), Expect = 2e-13
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C C + F+ +L H+RTHT E+PY C CGK+F ++ +LR H+
Sbjct: 48 KPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Score = 64.4 bits (158), Expect = 3e-13
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
K + C C + F++ NL H+RTHT E+PY+C CGK+F + HLR H
Sbjct: 76 KPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 61.7 bits (151), Expect = 3e-12
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 174 FTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
S + + E+PY+C CGK+F R DHL +H
Sbjct: 3 EFGSSSSVAQAALEPGEKPYACPECGKSFSRSDHLAEH 40
Score = 36.3 bits (85), Expect = 0.003
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERP 192
K + C C + F++ L +H+RTHT ++
Sbjct: 160 KPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 63.6 bits (156), Expect = 1e-13
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHL 208
+ + C C ++F ++L+ H + HT +PY C+IC K F +D
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Score = 62.1 bits (152), Expect = 5e-13
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 170 CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
C + FT H H RPY C +CGK F+ + HL H
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGH 56
Score = 54.4 bits (132), Expect = 3e-10
Identities = 6/47 (12%), Positives = 13/47 (27%), Gaps = 2/47 (4%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLR 209
K + C C ++F + H + + Y +
Sbjct: 64 KPYECNICAKRFMWRDSF--HRHVTSCTKSYEAAKAEQNTTEASGPS 108
Score = 46.7 bits (112), Expect = 3e-07
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 1/29 (3%)
Query: 184 ERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ ++ Y C CGK+F + H
Sbjct: 2 SSGSSGDKLYPCQ-CGKSFTHKSQRDRHM 29
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 64.6 bits (158), Expect = 1e-13
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 155 PGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDHR 212
P + + C + F Y L+ H R HT E+P+ C CGK F R ++L+ H+
Sbjct: 53 PEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK 112
Score = 61.5 bits (150), Expect = 2e-12
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
K F C F C + F +S NL IH+RTHT E+P+ C+ C + F + H
Sbjct: 89 KPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH 141
Score = 59.2 bits (144), Expect = 2e-11
Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 18/90 (20%)
Query: 131 GSSSSLFPGTSSTHSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDE 190
GSS S S + K C+R F+ + L+ H
Sbjct: 1 GSSGSSGQPIKQELSCK---------WIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVG 51
Query: 191 RPYS---------CDICGKAFRRQDHLRDH 211
P C GK+F+ + L +H
Sbjct: 52 GPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 48.1 bits (115), Expect = 2e-07
Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCD 196
K F C+F C+R+F S + H HT ++
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 64.1 bits (157), Expect = 1e-13
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
+ +C C + F +S L H+ HT E+P+ C CGK F +LR H
Sbjct: 33 RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLRTH 83
Score = 61.8 bits (151), Expect = 7e-13
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDI--CGKAFRRQDHLRDH 211
K F C F C ++F+ +NL H R HT +RPY C C K F + +L+ H
Sbjct: 61 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 57.9 bits (141), Expect = 2e-11
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ C C + F + + H TH R + C CGKAF L+ H
Sbjct: 4 RTIACPHKGCTKMFRDNSAMRKHLHTHG-PRVHVCAECGKAFVESSKLKRH 53
Score = 42.1 bits (100), Expect = 1e-05
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPY 193
+ ++C F CN++F +S NL H TH +
Sbjct: 91 RPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 62.2 bits (152), Expect = 2e-13
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE----RPYSCDICGKAFRRQDHLRDH 211
K + C C++ F + L +H + + D + C CGK F R++ + H
Sbjct: 14 KPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 57.5 bits (140), Expect = 1e-11
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAF 202
F+C C + FT+ + H + G +
Sbjct: 44 VPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENSGPSS 85
Score = 56.4 bits (137), Expect = 4e-11
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 179 NLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ RTHT E+PY+C C K FR++ L H
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMH 34
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 61.0 bits (149), Expect = 5e-13
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHER-THTDERPYSCD--ICGKAFRRQDHLRDHR 212
C F C R F+ L H++ H ++ +SC CGK+F + HL++H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHM 60
Score = 61.0 bits (149), Expect = 5e-13
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCDICGKAF 202
K F C C + F +L H + H+D R Y C+ G +
Sbjct: 37 KSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFSGPSS 78
Score = 41.8 bits (99), Expect = 8e-06
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 187 HTDERPYSCDI--CGKAFRRQDHLRDHR 212
+ CD CG+ F + +L H+
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHHK 29
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 55.3 bits (134), Expect = 4e-11
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHE-RTHTDERPYSCDICGKAF 202
K +IC+ C + F++ +L H + HT ERP+ C +
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP 51
Score = 51.8 bits (125), Expect = 8e-10
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + +PY C CGK F R DHL H
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDHLNGH 31
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 54.6 bits (131), Expect = 7e-11
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 155 PGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDIC 198
G + R +KQ C+ C + F Y+L H+ +H+ E+PYS
Sbjct: 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 41.1 bits (96), Expect = 6e-06
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 185 RTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + +C+ICGK FR HL H+
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYHLNRHK 32
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 54.1 bits (131), Expect = 1e-10
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ E+ Y CD+CGK F + HL+ H+
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQ 32
Score = 42.1 bits (100), Expect = 2e-06
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C ++F++S +L H+R HT E+P
Sbjct: 11 KCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 54.0 bits (129), Expect = 1e-10
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 164 QFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
++IC+ C + K L H RTHTD RPY C C +F+ + +L H
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 32.4 bits (73), Expect = 0.013
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 157 RASRPKKQFICKFCNRQFTKSYNLLIHERTHTDER 191
R + + C +CN F NL H ++ +
Sbjct: 22 RTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-10
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P+ CDICGK+F + L H
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSRLNRH 31
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/34 (32%), Positives = 13/34 (38%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCD 196
K F C C + F L H HT E+P
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 53.3 bits (129), Expect = 2e-10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+PYSC++CGKAF HL H
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAHLNQHL 32
Score = 40.6 bits (96), Expect = 9e-06
Identities = 11/34 (32%), Positives = 14/34 (41%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCD 196
K + C C + F S +L H R HT E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGPS 44
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 53.4 bits (129), Expect = 2e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ TD + Y+C+ CGKAF R HL H
Sbjct: 3 SGSSGTDSKSYNCNECGKAFTRIFHLTRH 31
Score = 36.4 bits (85), Expect = 3e-04
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT+ ++L H++ HT + S
Sbjct: 11 KSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 52.9 bits (128), Expect = 3e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E+PY C+ CG F + HLR H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAHLRAH 30
Score = 43.7 bits (104), Expect = 6e-07
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
K + C+ C +F + +L H HT P S
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 52.5 bits (127), Expect = 3e-10
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E+PY C+ICG FR L+ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSH 30
Score = 43.3 bits (103), Expect = 9e-07
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
K + C+ C +F L H R HT P S
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 4e-10
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + E+PY C CGKAF R HL +HR
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHR 32
Score = 40.6 bits (96), Expect = 9e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F + +L H R HT RP
Sbjct: 11 KPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 4e-10
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+PY C+ CGK+F ++ HL HR
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHR 32
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K +IC C + F + +L H R HT E+P
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 52.5 bits (127), Expect = 4e-10
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T ++P+ C CGK+FR + +L H
Sbjct: 2 SSGSSGTGQKPFECTHCGKSFRAKGNLVTH 31
Score = 45.6 bits (109), Expect = 1e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + F NL+ H+R HT E+
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 52.5 bits (127), Expect = 4e-10
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + ERPY C+ CGK F R HL +H
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEH 31
Score = 41.7 bits (99), Expect = 3e-06
Identities = 7/33 (21%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ + C C + F + +L+ H + H E+
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 4e-10
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T +PY C+ CGKAFR + +L H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIH 31
Score = 44.8 bits (107), Expect = 2e-07
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K ++C C + F L+IH RTHT E S
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 52.5 bits (127), Expect = 4e-10
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ C KAF + +L H
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVH 31
Score = 45.2 bits (108), Expect = 2e-07
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F NL++H+RTHT E S
Sbjct: 11 KPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 5e-10
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C +C KAF ++ HL H
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAHLAQH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + CK C++ FT+ +L H++THT E+P
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 52.1 bits (126), Expect = 6e-10
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+PY C+ CGK F ++ L H
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F++ L H+RTHT E+P
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 7e-10
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + ++PY C C K F + HL H+
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGHLNQHK 32
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + CK C + F + +L H+R HT ER
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 7e-10
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+PY C CGK ++R+ L H
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLDLDFH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCD 196
K + C C + + + +L H+R HT E+
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 7e-10
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+P+ C CGKAFR+ HL H
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIHLASH 31
Score = 41.3 bits (98), Expect = 4e-06
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F CK C + F ++ +L H R HT E+P
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 8e-10
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C ICGK+F ++ L H
Sbjct: 2 SSGSSGTGEKPYECSICGKSFTKKSQLHVH 31
Score = 45.2 bits (108), Expect = 2e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FTK L +H++ HT E+P
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 8e-10
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P+ C CGK++ ++ HL H
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVHLTQH 31
Score = 42.1 bits (100), Expect = 3e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + + + +L H+R HT E+P
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.8 bits (125), Expect = 8e-10
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+PY C+ CGK F + HL HR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 41.4 bits (98), Expect = 5e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT++ +L H R HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.7 bits (125), Expect = 8e-10
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C +CGKAFR HL H
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSHLVQH 31
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C+ C + F S +L+ H H+ ERP
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 9e-10
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T +PY C+ CGKAF + L H+
Sbjct: 2 SSGSSGTGGKPYQCNECGKAFSQTSKLARHQ 32
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F+++ L H+R HT E+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 1e-09
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGK FRR HL H
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARH 31
Score = 39.8 bits (94), Expect = 2e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F ++ +L H+ HT E+P
Sbjct: 11 KPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.3 bits (124), Expect = 1e-09
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T ER Y C CGKAF R+ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMH 31
Score = 43.3 bits (103), Expect = 9e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ + C C + F + L++H+R HT E+P
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGK FR +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRH 31
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F + L H+R HT E+P
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E PY C CGKAF R+ L H
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQLISH 31
Score = 44.4 bits (106), Expect = 4e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ C C + F++ Y L+ H+RTH E+P
Sbjct: 11 NPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGK F + HL +H
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLANH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT++ +L H+R HT +P
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGKAFR +L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTH 31
Score = 41.0 bits (97), Expect = 7e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F NL H+ HT E+P
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.4 bits (124), Expect = 1e-09
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGK + + +L H
Sbjct: 2 SSGSSGTGEKPYKCEKCGKGYNSKFNLDMH 31
Score = 45.6 bits (109), Expect = 1e-07
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C+ C + + +NL +H++ HT ERP
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY CD+C KAF L H
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQH 31
Score = 40.6 bits (96), Expect = 1e-05
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPYSC 195
C C + F+ +L H+R H+ E+P
Sbjct: 15 CDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 10/30 (33%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + E+P+ C+ CGK F + HL H+
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSHLHSHQ 32
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C+ C ++FT++ +L H+R HT E+P
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGKAF ++ +L H
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F + NL H+R HT E+P
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGKAF R+ L H
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIH 31
Score = 46.7 bits (112), Expect = 6e-08
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT+ L IH+++HT ER
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+PY C+ CGK + R+ +L H
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMH 31
Score = 44.0 bits (105), Expect = 6e-07
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C+ C + + + NL +H+R H E+
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+ Y C+ CGK F R L H
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQLSQH 31
Score = 41.4 bits (98), Expect = 4e-06
Identities = 10/33 (30%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K++ C C + F+++ L H++ HT E+P
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 1e-09
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T ++PY C+ CGK F + HL HR
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSHLARHR 32
Score = 40.6 bits (96), Expect = 1e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT++ +L H HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 53.4 bits (127), Expect = 1e-09
Identities = 19/55 (34%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 157 RASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
AS+ QF+C C F+ S +L H R E C +C K F D DH
Sbjct: 67 LASKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDH 119
Score = 36.8 bits (84), Expect = 0.001
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 170 CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
N Q + L + C +C F L+ H
Sbjct: 52 HNPQLLDESSYLYRLLASKAISQFVCPLCLMPFSSSVSLKQH 93
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + ERP+ C+ CGK F R+ HL H
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSHLAGH 31
Score = 41.0 bits (97), Expect = 7e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ F C C + F + +L H R H+ E+
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 9/29 (31%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+P+ C+ CGK F + L H
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQLHSH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C+ C ++FT++ L H+R HT E+P
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 51.0 bits (123), Expect = 2e-09
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGKAFR + L H
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIH 31
Score = 43.3 bits (103), Expect = 9e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F +L IH+ TH+ E+P
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.9 bits (123), Expect = 2e-09
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+PY C+ CGK F + HL HR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHR 32
Score = 40.5 bits (96), Expect = 8e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT++ +L+ H HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY CD+C K+FR L H
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C++ F +L +H+R HT E+P
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T ERP+ C+ CGK+F + HL H+
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAHLIQHQ 32
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ C C + F +S +L+ H+R HT E+P
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+PY C+ CGK F + HL HR
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHR 32
Score = 40.9 bits (97), Expect = 8e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT++ +L H HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T + + C CGKAF R+ L H
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + FT+ L +H++ HT E+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T +RPY C CGKAF+ + L HR
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHR 32
Score = 43.3 bits (103), Expect = 8e-07
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ + C C + F +L+ H R+HT E+P
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+P+ C CGKAF L HR
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHR 32
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + F+ L H R HT E+P
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.6 bits (122), Expect = 2e-09
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+PY CD CGKAF L H
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRH 31
Score = 43.3 bits (103), Expect = 1e-06
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K ++C +C + F S L+ H+R HT E+P
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-09
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T ER Y C CGKAF ++ L H
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ + C C + F + L +H+R H E+P
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 2e-09
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ + E+PY C+ CGK F + HL +H
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHW 32
Score = 40.9 bits (97), Expect = 7e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT++ +L H R HT E+P
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 50.2 bits (121), Expect = 2e-09
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+P+ C+ CGK F H
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQCYSH 31
Score = 45.2 bits (108), Expect = 2e-07
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICG 199
K F C+ C + F + H+R+H+ E+P G
Sbjct: 11 KPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGPS-SG 46
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGK+F ++ L H
Sbjct: 3 SGSSGTGEKPYECSDCGKSFIKKSQLHVH 31
Score = 44.8 bits (107), Expect = 2e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F K L +H+R HT E P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P+ C CGK+F L H
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + F+ S L H+R HT E+P
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGKAF + L H
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTH 31
Score = 41.7 bits (99), Expect = 3e-06
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F+ +L H+ HT ++P
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 50.2 bits (121), Expect = 3e-09
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E PY C CGK F R+D L H
Sbjct: 3 SGSSGTGENPYECCECGKVFSRKDQLVSH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ C C + F++ L+ H++TH+ + S
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T +PY C+ CGKAF L H
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTH 31
Score = 40.2 bits (95), Expect = 1e-05
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K ++C C + F+ +L H+ HT E+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+PY C+ CGKAF + L H+
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQ 32
Score = 41.7 bits (99), Expect = 3e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F+++ L H+R HT E+P
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY+C+ CGKAF L++H
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEH 31
Score = 41.4 bits (98), Expect = 6e-06
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C+ C + F L H+R HT E+P
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+ Y+C CGK+F R L H
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKH 31
Score = 43.7 bits (104), Expect = 8e-07
Identities = 13/33 (39%), Positives = 20/33 (60%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + CK C + F+++ LL HER H+ E+P
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 50.2 bits (121), Expect = 3e-09
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T E+P+ C CGK F R+ L H
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHH 32
Score = 42.1 bits (100), Expect = 2e-06
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + F++ L +H + HT E+P
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 49.9 bits (120), Expect = 3e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T ++PY C CGKAF + L H
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH 31
Score = 37.2 bits (87), Expect = 2e-04
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHER-THTDERPYSC 195
K + C C + F ++ +L+ H R HT E+P
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGP 44
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 3e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGK+F + LR H
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIH 31
Score = 44.1 bits (105), Expect = 5e-07
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT L IH++ HT ER
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 3e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGKAF + +L H
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTH 31
Score = 43.3 bits (103), Expect = 8e-07
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + FT NL H++ HT E+P
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 4e-09
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 182 IHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C +CGKAF + L H
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVH 31
Score = 42.9 bits (102), Expect = 2e-06
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPYSC 195
C C + F+ +L +H+R H+ ++P
Sbjct: 15 CSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.8 bits (120), Expect = 4e-09
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T ERPY C +CGKAF + +L H
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKH 31
Score = 44.4 bits (106), Expect = 3e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ +IC C + FT NL+ H++ HT E+P
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 49.5 bits (119), Expect = 5e-09
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T +PY C C K F + L H
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVH 31
Score = 45.2 bits (108), Expect = 2e-07
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F+ L++H+R+HT +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 5e-09
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E P+ C CGK F + +L H
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIH 31
Score = 47.1 bits (113), Expect = 3e-08
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
FIC C + FT NL+IH++ HT ERP
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 49.5 bits (119), Expect = 5e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY+C CGK+FR L H
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + CK C + F + LL H+R H+ E+P
Sbjct: 11 KPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 5e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C+ CGK F + L H
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C+ C + F +L H HT E+P
Sbjct: 11 KPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 49.5 bits (119), Expect = 5e-09
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+PY C+ CGKAF + L H
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F L++HERTH S
Sbjct: 11 KPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 49.5 bits (119), Expect = 5e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E+PY CD CGKAF ++ L H
Sbjct: 2 SSGSSGGEKPYRCDQCGKAFSQKGSLIVH 30
Score = 41.4 bits (98), Expect = 4e-06
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
K + C C + F++ +L++H R HT P S
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 49.5 bits (119), Expect = 5e-09
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ E+ + C C F + LR H+
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQ 32
Score = 43.3 bits (103), Expect = 8e-07
Identities = 9/33 (27%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C+ C+ F+++ +L +H+ H E+P
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 49.4 bits (119), Expect = 5e-09
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGKAF + HL H
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTHLIQH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 12/33 (36%), Positives = 21/33 (63%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + CK C + F+++ +L+ H+R HT E+P
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.4 bits (119), Expect = 6e-09
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P+ C C KAF + +L H
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVH 31
Score = 45.9 bits (110), Expect = 1e-07
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + F NL++H+RTHT E+P
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 6e-09
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E+PY C CGKAF + +L H
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIH 31
Score = 44.8 bits (107), Expect = 2e-07
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F+ L+IH RTH+ E+P
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 7e-09
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGKAF H
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQH 31
Score = 41.0 bits (97), Expect = 6e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F + + H+R HT +RP
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 49.1 bits (118), Expect = 7e-09
Identities = 9/29 (31%), Positives = 12/29 (41%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P+ C CG F L H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKH 31
Score = 46.0 bits (110), Expect = 1e-07
Identities = 12/34 (35%), Positives = 15/34 (44%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCD 196
K F CK C F+ S +L H R+H P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 7e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+PY C CGKAF + +L H
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKH 31
Score = 44.4 bits (106), Expect = 3e-07
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K +IC C + FT NL+ H++ HT ++P
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 49.0 bits (118), Expect = 8e-09
Identities = 6/30 (20%), Positives = 13/30 (43%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ ++ + C+ C K F + L H+
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQ 32
Score = 42.5 bits (101), Expect = 2e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + FT+S +L +H+R HT E+P
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.1 bits (118), Expect = 8e-09
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ ER + C CGK F + + HR
Sbjct: 3 SGSSGHGERGHRCSDCGKFFLQASNFIQHR 32
Score = 42.9 bits (102), Expect = 1e-06
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ C C + F ++ N + H R HT E+P
Sbjct: 11 RGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 49.1 bits (118), Expect = 8e-09
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + + + C CG+ F + HL H
Sbjct: 3 SGSSGSSTKSHQCHECGRGFTLKSHLNQH 31
Score = 40.6 bits (96), Expect = 1e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K C C R FT +L H+R HT E+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 48.5 bits (116), Expect = 9e-09
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
R T +P+ C C ++F R DHL HR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 31.5 bits (72), Expect = 0.013
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTH 187
K F C C+R F++S +L +H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ PY C C K+F + L H
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVH 31
Score = 44.1 bits (105), Expect = 5e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ C C + F+ LL+H+R HT E+P
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 48.7 bits (117), Expect = 1e-08
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P C CGKAF + L H
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQLIMH 31
Score = 44.9 bits (107), Expect = 3e-07
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K C C + F L++H+RTH D++
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ T E+P+ C CGK+F L H
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVH 31
Score = 42.9 bits (102), Expect = 1e-06
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K C+ C + F+ + L++H+R HT E P
Sbjct: 11 KPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 48.3 bits (116), Expect = 1e-08
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E+PY C CGK+F L H
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYRLTQH 31
Score = 42.5 bits (101), Expect = 2e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C + F+ SY L H THT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 47.9 bits (115), Expect = 2e-08
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 184 ERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E PY C CGKAF R+D L H
Sbjct: 2 SSGSSGENPYECSECGKAFNRKDQLISH 29
Score = 44.0 bits (105), Expect = 4e-07
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
+ C C + F + L+ H+RTH E S
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 46.8 bits (112), Expect = 5e-08
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + E+ ++CD CGK F LR H
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIH 31
Score = 37.6 bits (88), Expect = 1e-04
Identities = 10/34 (29%), Positives = 13/34 (38%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCD 196
K C C + F L IH+R H E+
Sbjct: 11 KSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 46.0 bits (110), Expect = 9e-08
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K F C C + F+ LL+H++TH +E+P
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 44.1 bits (105), Expect = 4e-07
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 184 ERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E+P+ C C KAF + +L H
Sbjct: 2 SSGSSGEKPFGCSCCEKAFSSKSYLLVH 29
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 45.3 bits (108), Expect = 2e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 184 ERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ +R Y C CGK+FR++ L H
Sbjct: 2 SSGSSGQRVYECQECGKSFRQKGSLTLH 29
Score = 40.2 bits (95), Expect = 1e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
+ + C+ C + F + +L +HER HT P S
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 45.0 bits (107), Expect = 2e-07
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 183 HERTHTDERPYSCD--ICGKAFRRQDHLRDHR 212
+ T E+P++C CG F R D L HR
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHR 34
Score = 43.8 bits (104), Expect = 6e-07
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDERPYSCD 196
K F C + C +F++S L H R+H+ +P
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 44.2 bits (105), Expect = 4e-07
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
++C C + FT+ +L +H+R+ + P S
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 41.1 bits (97), Expect = 5e-06
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ E PY C CGK+F ++ L H
Sbjct: 2 SSGSSGGETPYLCGQCGKSFTQRGSLAVH 30
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 43.9 bits (104), Expect = 5e-07
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 185 RTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ E+PYSC C + F + L H+
Sbjct: 3 SGSSGEKPYSCAECKETFSDNNRLVQHQ 30
Score = 36.9 bits (86), Expect = 2e-04
Identities = 9/33 (27%), Positives = 16/33 (48%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSC 195
K + C C F+ + L+ H++ HT + S
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 44.2 bits (104), Expect = 1e-06
Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 5/42 (11%)
Query: 159 SRPKKQFICKF--CNRQ---FTKSYNLLIHERTHTDERPYSC 195
+ +C + C R+ F Y L+ H R HT E+
Sbjct: 52 GPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 42.6 bits (100), Expect = 6e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIH-ERTHTDERPYS--------CDICGKAFRRQDHLRDH 211
+ K C+R F+ + L+ H H + C GK+F+ + L +H
Sbjct: 22 AQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNH 81
Score = 33.4 bits (76), Expect = 0.010
Identities = 4/26 (15%), Positives = 6/26 (23%)
Query: 186 THTDERPYSCDICGKAFRRQDHLRDH 211
+ C + F L H
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTH 44
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 43.6 bits (102), Expect = 4e-06
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 175 TKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + ++ T + C C A+ L H
Sbjct: 2 SSGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVH 38
Score = 42.4 bits (99), Expect = 1e-05
Identities = 9/53 (16%), Positives = 15/53 (28%)
Query: 159 SRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ + +LL E ++ C CG +F L H
Sbjct: 47 DDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 34.4 bits (78), Expect = 0.008
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 1/51 (1%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+F CK C+ + L +H T ++ R
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMN-ETGHYRDDNHETDNNNPKRWSKPRKR 66
Score = 30.9 bits (69), Expect = 0.12
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 2/67 (2%)
Query: 129 FPGSSSSLFPGTSSTHSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIH--ERT 186
+ + S +R L +K C +C F +L +H +
Sbjct: 45 YRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Query: 187 HTDERPY 193
H +
Sbjct: 105 HYQKVSG 111
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 41.0 bits (96), Expect = 6e-06
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ E P+ C C + F ++++L H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHE 32
Score = 35.6 bits (82), Expect = 5e-04
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
+ F C C+R FT+ L+ HERTH + S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.8 bits (97), Expect = 1e-05
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 153 RAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ K+ + C+ CN + + HER C C F + ++H
Sbjct: 5 SSGASPVENKEVYQCRLCNAKLSSLLEQGSHERLC--RNAAVCPYCSLRFFSPELKQEHE 62
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 39.6 bits (93), Expect = 2e-05
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDER 191
+ F+C+ C R F + +L H R+HT+E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 38.1 bits (89), Expect = 6e-05
Identities = 10/21 (47%), Positives = 16/21 (76%)
Query: 191 RPYSCDICGKAFRRQDHLRDH 211
R + C++C +AF RQ+HL+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRH 21
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 40.4 bits (94), Expect = 2e-05
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 176 KSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
S + ++ H +R C CG F R+ L +
Sbjct: 2 SSGSSGKRQKIHLGDRSQKCSKCGIIFIRRSTLSRRK 38
Score = 38.5 bits (89), Expect = 1e-04
Identities = 8/51 (15%), Positives = 14/51 (27%), Gaps = 7/51 (13%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ C C F T + + C+ C K ++ L
Sbjct: 16 DRSQKCSKCGIIFI-------RRSTLSRRKTPMCEKCRKDSCQEAALNKDE 59
Score = 33.1 bits (75), Expect = 0.009
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTDERPY 193
+K +C+ C + + L E + ++
Sbjct: 37 RKTPMCEKCRKDSCQEAALNKDEGNESGKKTS 68
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 38.9 bits (91), Expect = 3e-05
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 159 SRPKKQFICKF--CNRQFTKSYNLLIHERTHTDER 191
KKQ IC C + + K+ +L H R HT ER
Sbjct: 3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 30.4 bits (69), Expect = 0.032
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 190 ERPYSCDI--CGKAFRRQDHLRDHR 212
++ + C I CGK + + HLR H
Sbjct: 6 KKQHICHIQGCGKVYGKTSHLRAHL 30
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 37.9 bits (88), Expect = 1e-04
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 161 PKKQFICKF--CNRQFTKSYNLLIHERTHTDER 191
P K F C F C + F + YN+ H +TH ++R
Sbjct: 15 PDKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 25.2 bits (55), Expect = 3.2
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 190 ERPYSCDI--CGKAFRRQDHLRDH 211
++ + C C K F+R+ ++R H
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSH 39
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 37.7 bits (87), Expect = 2e-04
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
P + +C+ C+ + + L HE + R C CG+ +D L+ H
Sbjct: 14 PLRLAVCQHCDLELSIL-KLKEHE-DYCGARTELCGNCGRNVLVKD-LKTHP 62
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 36.4 bits (85), Expect = 2e-04
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 163 KQFIC--KFCNRQFTKSYNLLIHERTHTDER 191
+ F+C +C ++FT+S L H+RTHT E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 30.7 bits (70), Expect = 0.023
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 191 RPYSCDI--CGKAFRRQDHLRDHR 212
RP+ C CGK F R D L+ H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 39.8 bits (92), Expect = 4e-04
Identities = 18/134 (13%), Positives = 31/134 (23%), Gaps = 10/134 (7%)
Query: 62 AMMADKRKELALREEAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNP 121
DK+ A A A T + +N
Sbjct: 78 EGTPDKKGNTRGDLVNEHSEAKDEADEATQKQAKDTDKSK-----AQVTYSDTGINNANE 132
Query: 122 STSSSFPFPGSSSSLFPGTSSTHSHLDRRLLRAPGRASRPKK-----QFICKFCNRQFTK 176
+ S S+ P ++ + + P R P + C C+
Sbjct: 133 LSRSGNVDNEGGSNQKPMSTRIAEATSAIVSKHPARVGLPPTASSGHGYQCHVCSAVLFS 192
Query: 177 SYNLLIHERTHTDE 190
+L H +H
Sbjct: 193 PLDLDAHVASHGLH 206
Score = 36.8 bits (84), Expect = 0.004
Identities = 19/156 (12%), Positives = 40/156 (25%), Gaps = 10/156 (6%)
Query: 65 ADKRKELALREEAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTS 124
R++ R A V A +A M P G + +
Sbjct: 47 TSNREQYRARPGIASVQRATESAELPMKNNDEGTPDK--KGNTRGDLVNEHSEAKDEADE 104
Query: 125 SSFPFPGSSSSLFPGTSSTHSHLDRRLLRAP--------GRASRPKKQFICKFCNRQFTK 176
++ + + + + ++ + G +P I + + +K
Sbjct: 105 ATQKQAKDTDKSKAQVTYSDTGINNANELSRSGNVDNEGGSNQKPMSTRIAEATSAIVSK 164
Query: 177 SYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
+ T + Y C +C L H
Sbjct: 165 HPARVGLPPTASSGHGYQCHVCSAVLFSPLDLDAHV 200
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 37.1 bits (85), Expect = 5e-04
Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 144 HSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERT-HTDER---PYSCDICG 199
H H + + + + CK+C Q H + H + Y C C
Sbjct: 3 HHHHHHN-----QQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECN 57
Query: 200 KAFRRQDHLRDH 211
+R D L +H
Sbjct: 58 FLTKRYDALSEH 69
Score = 27.4 bits (60), Expect = 1.8
Identities = 7/34 (20%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 165 FICKFCNRQFTKSYNLLIH-ERTHTDERPYSCDI 197
++C CN + L H + H E + +
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTM 84
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 34.9 bits (79), Expect = 0.001
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDHR 212
+ E+PYSC +CG F+R+D + H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHV 30
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 34.4 bits (78), Expect = 0.001
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 156 GRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDER 191
G + K F C++CN+ F ++L H R HT+E+
Sbjct: 1 GSSGSSGKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 24.0 bits (51), Expect = 7.8
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 188 TDERPYSCDICGKAFRRQDHLRDH 211
+ + ++C+ C K F+ + L+ H
Sbjct: 5 SSGKIFTCEYCNKVFKFKHSLQAH 28
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 34.3 bits (79), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERTHTDER 191
P + + C FC R+F + L H H +R
Sbjct: 3 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 31.1 bits (70), Expect = 0.021
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 190 ERPYSCDI--CGKAFRRQDHLRDHR 212
+RPYSCD C KAF R L H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK 25
Score = 25.7 bits (56), Expect = 1.6
Identities = 6/29 (20%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTD 189
+ + C C++ F ++++L+ H+++H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 30.5 bits (68), Expect = 0.028
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDER 191
K ++C C RQF L H R HT E+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 23.9 bits (51), Expect = 5.9
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 191 RPYSCDICGKAFRRQDHLRDH 211
+PY C C + F L+ H
Sbjct: 2 KPYVCIHCQRQFADPGALQRH 22
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 32.2 bits (72), Expect = 0.033
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 157 RASRPKKQFICKFCNRQFTKSY-NLLIH-ERTHTDERPYSCDICGKAFRRQDHLRDH 211
RA + + +C CN K+ L H E + C C K F+ + L H
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYH 73
>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative
splicing, antiviral defense, ATP- binding, hydrolase,
immune response; 2.70A {Homo sapiens} PDB: 2qfb_A
Length = 145
Score = 32.0 bits (72), Expect = 0.055
Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 139 GTSSTHSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDIC 198
G+S H H L+ + K+ +C+ C + ++ + E H Y+
Sbjct: 2 GSSHHHHHHSSGLVPRGSHMDKENKKLLCRKCKALACYTADVRVIEECH-----YTV--L 54
Query: 199 GKAFRRQDHLRDH 211
G AF+ R H
Sbjct: 55 GDAFKECFVSRPH 67
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 32.4 bits (73), Expect = 0.064
Identities = 14/51 (27%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
C C R F K ++ IH R SCD C + +D H
Sbjct: 107 EFALMDCPQCQRPFQKF-HINIHILKDCPRRQVSCDNCAASMAFED-KEIH 155
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 29.1 bits (65), Expect = 0.10
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 164 QFICKFCNRQFTKSYNLLIHERTHTDER 191
+F C C ++F +S +L +H H +++
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
Score = 27.2 bits (60), Expect = 0.50
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
++C C K F R DHL H
Sbjct: 3 FACPECPKRFMRSDHLTLH 21
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 29.1 bits (65), Expect = 0.11
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 164 QFICKFCNRQFTKSYNLLIHERTHTDERP 192
+F C C ++F +S +L H H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLGE 30
Score = 27.6 bits (61), Expect = 0.40
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
++C C K F R DHL H
Sbjct: 3 FACPECPKRFMRSDHLSKH 21
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 32.1 bits (72), Expect = 0.14
Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 9/111 (8%)
Query: 76 EAACVAAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSS 135
+ AAA A A ++ + P+++ D P++S G + +S +++
Sbjct: 37 TSPNQAAADANQQQAGIVSSQSGPNAVGDSAPSSSVN---NDGDIITRPTSDSIAAVANA 93
Query: 136 LFPGTSSTHSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERT 186
P + ++C CN +F+ L H R+
Sbjct: 94 TKPAAVVSDP------QSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRS 138
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 28.3 bits (63), Expect = 0.16
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 191 RPYSCDICGKAFRRQDHLRDH 211
+ Y+C +C +AF R+D L H
Sbjct: 1 KAYACGLCNRAFTRRDLLIRH 21
Score = 24.4 bits (53), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERT 186
K + C CNR FT+ L+ H +
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQK 24
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 28.5 bits (63), Expect = 0.20
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 188 TDERPYSCDI--CGKAFRRQDHLRDHR 212
+D++P+ C CG+ F +DHL H+
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHK 28
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 28.2 bits (62), Expect = 0.23
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDER 191
K C C + FT++ +L+ H R HT E+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 28.6 bits (63), Expect = 0.23
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 154 APGRASRPKKQFICKFCNRQFTKSYNLLIHERTHT 188
+ G + + +K F C C + F+ S L HER HT
Sbjct: 2 SSGSSGQKEKCFKCNKCEKTFSCSKYLTQHERIHT 36
Score = 25.9 bits (56), Expect = 1.7
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 186 THTDERPYSCDICGKAFRRQDHLRDHR 212
+ E+ + C+ C K F +L H
Sbjct: 6 SGQKEKCFKCNKCEKTFSCSKYLTQHE 32
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 29.5 bits (65), Expect = 0.26
Identities = 11/55 (20%), Positives = 18/55 (32%)
Query: 157 RASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
K C C K+ L + + ++C CGK R ++ H
Sbjct: 27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLRSLAGMKYH 81
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 27.9 bits (61), Expect = 0.29
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 190 ERPYSCDICGKAFRRQDHLRDHR 212
+ + CD+CGK F+ + L+ H+
Sbjct: 7 GKTHLCDMCGKKFKSKGTLKSHK 29
Score = 25.6 bits (55), Expect = 2.1
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 156 GRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDE 190
G + K +C C ++F L H+ HT +
Sbjct: 1 GSSGSSGKTHLCDMCGKKFKSKGTLKSHKLLHTAD 35
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC),
C2H2, APO metal-binding, nucleus, phosphoprotein,
transcription, TRAN regulation; 1.80A {Homo sapiens}
Length = 48
Score = 28.2 bits (62), Expect = 0.32
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 189 DERPYSCDICGKAFRRQDHLRDHR 212
++PY+CDICGK ++ + L H
Sbjct: 4 RDKPYACDICGKRYKNRPGLSYHY 27
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 30.2 bits (67), Expect = 0.41
Identities = 5/45 (11%), Positives = 12/45 (26%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
+ ++ IH E+ + + + LR
Sbjct: 183 SEDYMKRLHSMSQETIHRNLARGEKRLQREKSEQVLDNPEDLRGP 227
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 27.0 bits (59), Expect = 0.56
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 187 HTDERPYSCDICGKAFRR----QDHLRDH 211
+ +RP+ C IC AF HL+ H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHLKVH 30
Score = 27.0 bits (59), Expect = 0.64
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTD 189
K+ F+C+ C FT N H + HTD
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTD 32
>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI,
protein structure initiative, center for eukaryotic
structural genomics, CESG; NMR {Homo sapiens} SCOP:
g.37.1.4
Length = 124
Score = 28.5 bits (63), Expect = 0.75
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 164 QFICKFCNRQFTKSYNLLIHERT 186
C C R F S NL H R+
Sbjct: 50 LHRCLACARYFIDSTNLKTHFRS 72
>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase
(NADP+), activated by LIG chloroplastic malate
dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5
d.162.1.1 PDB: 1civ_A*
Length = 375
Score = 29.4 bits (66), Expect = 0.75
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 81 AAAHAAAAAAMLLPHPTPPHSLLD-GLPNTSSPYGFPPG 118
+ A + A A L PTP G+ T +PYG
Sbjct: 269 STAVSIADAIKSLVTPTPEGDWFSTGVYTTGNPYGIAED 307
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 26.6 bits (58), Expect = 0.82
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
++C C K F R D L H
Sbjct: 3 FACPACPKRFMRSDALSKH 21
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 26.3 bits (57), Expect = 0.83
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 191 RPYSCDICGKAFRRQDHLRDH 211
RPYSC +CGK F + + H
Sbjct: 2 RPYSCSVCGKRFSLKHQMETH 22
>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces
vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E
Length = 279
Score = 29.0 bits (66), Expect = 0.91
Identities = 7/42 (16%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 81 AAAHAAAAAAMLL-PHPTPPH--SLL----DGLPNTSSPYGF 115
A H A A +L + + + + D + T + +
Sbjct: 227 ATPHVAGVAGLLASQGRSASNIRAAIENTADKISGTGTYWAK 268
>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1
Length = 280
Score = 28.7 bits (65), Expect = 1.2
Identities = 8/42 (19%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 81 AAAHAAAAAAMLL-PHPTPPH--SLL----DGLPNTSSPYGF 115
A+ H A AA+L + D + T + + +
Sbjct: 228 ASPHVAGLAALLASQGRNNIEIRQAIEQTADKISGTGTYFKY 269
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 25.4 bits (55), Expect = 1.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 191 RPYSCDICGKAFRRQDHLRDH 211
+PY C+ CGK F + L +H
Sbjct: 1 KPYVCERCGKRFVQSSQLANH 21
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex,
restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE;
1.50A {Helicobacter pylori} PDB: 3fc3_A*
Length = 200
Score = 27.9 bits (61), Expect = 1.9
Identities = 10/73 (13%), Positives = 20/73 (27%), Gaps = 8/73 (10%)
Query: 147 LDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERT-----HTDERPYSCDICGKA 201
D + R + C+ C + ++ ++C IC K
Sbjct: 87 TDGFEINQTDAKGRKTTRPSCRECRKNIDGVKLSSTEKKKMDEIAPPKGSVFTCPICEKR 146
Query: 202 F---RRQDHLRDH 211
+ + DH
Sbjct: 147 SIVGVTANLVHDH 159
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 25.9 bits (56), Expect = 2.0
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 188 TDERPYSCDICGKAFRRQDHLRDHR 212
+ E+ + C CG+ F + L +H+
Sbjct: 8 SREKSHQCRECGEIFFQYVSLIEHQ 32
>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A
{Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A
2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A
2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A*
3gt4_A* 3l1k_A 3osz_A ...
Length = 279
Score = 27.9 bits (63), Expect = 2.4
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 81 AAAHAAAAAAMLL-PHPTPPHSLLDGLPNTSSP---YGFPPGS 119
A H A AA L+ T S + +T++ P G+
Sbjct: 226 ATPHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGT 268
>2yb5_A FUSC, putative fusidic acid resistance protein; translation,
antibiotic resistance, zinc finger; 2.10A
{Staphylococcus aureus}
Length = 215
Score = 27.6 bits (61), Expect = 2.6
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 146 HLDRRLLRAPGRASRPKKQFICKFCNR 172
+LD + G S K + CK CN+
Sbjct: 137 NLDDKFEGIYGEISPNKVKGFCKICNQ 163
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 27.3 bits (60), Expect = 3.4
Identities = 9/35 (25%), Positives = 13/35 (37%)
Query: 173 QFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDH 207
FT+SY+L + D Y I K +
Sbjct: 65 NFTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSS 99
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 66
Score = 25.7 bits (56), Expect = 3.8
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSC-DICGKAFRRQDHLRDH 211
K+ C +C ++F + H+ P +C + CG ++ L H
Sbjct: 7 GKRTQPCTYCTKEFVFD-TIQSHQY-QCPRLPVACPNQCGVGTVAREDLPGH 56
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB:
4ado_A
Length = 222
Score = 27.2 bits (60), Expect = 3.8
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 147 LDRRLLRAPGRASRPKKQFICKFCNR 172
++L G S + C CN+
Sbjct: 146 EKKQLKGLYGEISNQVVKGFCTICNK 171
>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle-
degrading protease, nematodes, hydrolase, secreted,
zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A
Length = 279
Score = 26.8 bits (60), Expect = 5.2
Identities = 9/43 (20%), Positives = 14/43 (32%), Gaps = 4/43 (9%)
Query: 81 AAAHAAAAAAMLL-PHPTPPHSLLDGLPNTSSP---YGFPPGS 119
A H A AA L ++ + S+ P G+
Sbjct: 227 ATPHIAGLAAYLFGLEGGSAGAMCGRIQTLSTKNVLTSIPSGT 269
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel
beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A
{Aspergillus aculeatus} SCOP: b.80.1.3
Length = 422
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 7/56 (12%)
Query: 93 LPHPTPPHSLLDGLPNTSSPYGFPPGSNPS-------TSSSFPFPGSSSSLFPGTS 141
L + S T++P G+ + + ++S P P +S +PG +
Sbjct: 360 LKDSSSHTSYTTTSTVTAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos
taurus} SCOP: i.9.1.1
Length = 390
Score = 26.7 bits (58), Expect = 5.7
Identities = 11/47 (23%), Positives = 14/47 (29%)
Query: 94 PHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSSLFPGT 140
P + G P S + PG S+ PG GT
Sbjct: 286 YGPGSSGTWNPGRPEPGSAGTWNPGRPEPGSAGTWNPGRPEPGSAGT 332
Score = 26.7 bits (58), Expect = 7.1
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Query: 94 PHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSFPFPGSSSSLFPGTS 141
P P + +P + PGS+ + + P PGS+ + PG
Sbjct: 268 GSPRKPGT---SSIGNVNPGSYGPGSSGTWNPGRPEPGSAGTWNPGRP 312
>2yuc_A TNF receptor-associated factor 4; ZF-TRAF, cysteine-rich domain
associated with ring and TRAF domains protein 1,
malignant 62; NMR {Homo sapiens}
Length = 76
Score = 24.9 bits (54), Expect = 7.6
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 170 CNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDH 211
C + ++ +L H + +R C+ CG F + H
Sbjct: 23 CPMKLSRR-DLPAHLQHDCPKRRLKCEFCGCDFSGEA-YESH 62
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.1 bits (51), Expect = 8.1
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 192 PYSCDICGKAFRRQDHLRDHR 212
C CGK FR L +H+
Sbjct: 12 TSECQECGKIFRHSSLLIEHQ 32
>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein
inhibitor, hydrolase; 1.10A {Bacillus licheniformis}
SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A
1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A
2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...
Length = 274
Score = 26.3 bits (59), Expect = 8.3
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 81 AAAHAAAAAAMLL-PHPT-PPHSLLDGLPNTSSPYGFP 116
A+ H A AAA++L HP + + L +T++ G
Sbjct: 222 ASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGSS 259
>3afg_A Subtilisin-like serine protease; propeptide, thermococcus
kodakaraensis, hydrolas protease; 2.00A {Thermococcus
kodakarensis}
Length = 539
Score = 26.4 bits (58), Expect = 8.7
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 81 AAAHAAAAAAMLL---PHPTPPHSLLDGLPNTSSPYGFPPGSNP 121
A H A AA+LL P TP + L T+ ++
Sbjct: 361 ATPHVAGIAALLLQAHPSWTPD-KVKTALIETADIVKPDEIADI 403
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function,
zinc finger, metal-binding protein, structural genomics;
NMR {Mus musculus} SCOP: g.41.3.4
Length = 85
Score = 25.0 bits (54), Expect = 9.2
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
Query: 149 RRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAF 202
R+ + QF C FCN + KS ++ + +T SC +C + F
Sbjct: 8 RKPPPKKKMTGTLETQFTCPFCNHE--KSCDVKMDRARNTGV--ISCTVCLEEF 57
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 23.6 bits (50), Expect = 9.4
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 156 GRASRPKKQFICKFCNRQFTKSYNLLIHERTHTDER 191
G + K + C C+ NL +H R HT E+
Sbjct: 1 GSSGSSGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 24.1 bits (51), Expect = 9.5
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 154 APGRASRPKKQFICKFCNRQFTKSYNLLIHERTHT 188
+ G + +K++ C C F +L+ H++TH
Sbjct: 2 SSGSSGHTRKRYECSKCQATFNLRKHLIQHQKTHA 36
>1iu1_A Gamma1-adaptin; coated PITS, endocytosis; 1.80A {Homo sapiens}
SCOP: b.1.10.2
Length = 146
Score = 25.7 bits (56), Expect = 9.6
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 94 PHPTPPHSLLDGLPNTSSPYGFPPGSNPST 123
P + PH LLDGL + G T
Sbjct: 3 PQISQPHFLLDGLSSQPLFNDIAAGIPSIT 32
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.131 0.403
Gapped
Lambda K H
0.267 0.0642 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,275,912
Number of extensions: 190250
Number of successful extensions: 1255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1184
Number of HSP's successfully gapped: 419
Length of query: 212
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 123
Effective length of database: 4,216,824
Effective search space: 518669352
Effective search space used: 518669352
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.1 bits)