RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy8696
(212 letters)
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 50.0 bits (120), Expect = 1e-09
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHER-THTDERPYSCDI 197
K +IC+ C + F++ +L H + HT ERP+ C +
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 39
Score = 39.2 bits (92), Expect = 1e-05
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 188 TDERPYSCDICGKAFRRQDHLRDH 211
+ +PY C CGK F R DHL H
Sbjct: 1 SVGKPYICQSCGKGFSRPDHLNGH 24
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 49.2 bits (118), Expect = 2e-09
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 185 RTHTDERPYSCDICGKAFRRQDHLRDH 211
RTH+ E+PY C IC F + ++ H
Sbjct: 1 RTHSGEKPYECYICHARFTQSGTMKMH 27
Score = 33.4 bits (77), Expect = 0.001
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 163 KQFICKFCNRQFTKSYNLLIHE-RTHTDE 190
K + C C+ +FT+S + +H + HT+
Sbjct: 7 KPYECYICHARFTQSGTMKMHILQKHTEN 35
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 49.3 bits (117), Expect = 3e-09
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAFRRQDHLRDHR 212
K + C+ C + FT H H RPY C +CGK F+ + HL H
Sbjct: 2 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHM 50
Score = 33.5 bits (76), Expect = 0.001
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 142 STHSHLDRRLLRAPGRASRPKKQFICKFCNRQFTKSYNLLIHERTH 187
+ S DR + + + C C ++F ++L+ H + H
Sbjct: 13 THKSQRDRHM-----SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIH 53
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 48.1 bits (115), Expect = 5e-09
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 185 RTHTDERPYSCDICGKAFRRQDHLRDHR 212
RTHT E+PY+C C K FR++ L H
Sbjct: 1 RTHTGEKPYACSHCDKTFRQKQLLDMHF 28
Score = 37.3 bits (87), Expect = 4e-05
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE 190
K + C C++ F + L +H + + D
Sbjct: 7 KPYACSHCDKTFRQKQLLDMHFKRYHDP 34
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 47.8 bits (114), Expect = 8e-09
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 165 FICK--FCNRQFTKSYNLLIHERTHTDERPYSCD 196
F C C + F +L H + H+D R Y C+
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICE 35
Score = 28.1 bits (63), Expect = 0.070
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 2/22 (9%)
Query: 193 YSCD--ICGKAFRRQDHLRDHR 212
+SC CGK+F + HL++H
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHM 23
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 47.0 bits (112), Expect = 1e-08
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
R T +P+ C C ++F R DHL HR
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDHLALHR 31
Score = 31.2 bits (71), Expect = 0.007
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHT 188
K F C C+R F++S +L +H + H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRHM 35
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 46.1 bits (110), Expect = 2e-08
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDHR 212
H+ E+PY C CGKAF R L H+
Sbjct: 2 HSGEKPYGCVECGKAFSRSSILVQHQ 27
Score = 38.8 bits (91), Expect = 1e-05
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE 190
K + C C + F++S L+ H+R HT E
Sbjct: 6 KPYGCVECGKAFSRSSILVQHQRVHTGE 33
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 44.4 bits (105), Expect = 1e-07
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 183 HERTHTDERPYSCDICGKAFRRQDHLRDHR 212
E + R Y CD CGK+F L HR
Sbjct: 3 SEWQQRERRRYKCDECGKSFSHSSDLSKHR 32
Score = 33.6 bits (77), Expect = 0.001
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTDE 190
++++ C C + F+ S +L H RTHT E
Sbjct: 10 RRRYKCDECGKSFSHSSDLSKHRRTHTGE 38
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 41.1 bits (97), Expect = 2e-06
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDER 191
+ F+C+ C R F + +L H R+HT+E+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 39.1 bits (92), Expect = 9e-06
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 191 RPYSCDICGKAFRRQDHLRDHR 212
R + C++C +AF RQ+HL+ H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHY 22
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 40.3 bits (95), Expect = 3e-06
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 190 ERPYSCDICGKAFRRQDHLRDHR 212
++P+ C IC + F R DHL H
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHI 23
Score = 36.8 bits (86), Expect = 6e-05
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHT 188
K F C+ C R F++S +L H RTHT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT 27
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 40.4 bits (95), Expect = 3e-06
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDER 191
K+F C C ++F +S +L H +TH +++
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQNKK 29
Score = 35.0 bits (81), Expect = 2e-04
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 191 RPYSCDICGKAFRRQDHLRDHR 212
+ ++C C K F R DHL H
Sbjct: 1 KKFACPECPKRFMRSDHLSKHI 22
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 39.7 bits (93), Expect = 6e-06
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 187 HTDERPYSCDICGKAFRRQDHLRDHR 212
+ +RP+ C IC AF + + H
Sbjct: 2 SSGKRPFVCRICLSAFTTKANCARHL 27
Score = 36.3 bits (84), Expect = 1e-04
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE 190
+ F+C+ C FT N H + HTD
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHTDT 33
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 37.3 bits (87), Expect = 4e-05
Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Query: 190 ERPYSCDI--CGKAFRRQDHLRDHR 212
+RPYSCD C KAF R L H+
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHK 25
Score = 34.2 bits (79), Expect = 5e-04
Identities = 6/30 (20%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDE 190
+ + C C++ F ++++L+ H+++H ++
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 36.5 bits (85), Expect = 6e-05
Identities = 13/31 (41%), Positives = 21/31 (67%), Gaps = 2/31 (6%)
Query: 163 KQFIC--KFCNRQFTKSYNLLIHERTHTDER 191
+ F+C +C ++FT+S L H+RTHT E+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.2 bits (79), Expect = 5e-04
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 191 RPYSCDI--CGKAFRRQDHLRDHR 212
RP+ C CGK F R D L+ H+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHK 24
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 35.4 bits (82), Expect = 2e-04
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDE 190
K C F C + +++ NL H R+HT E
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 33.5 bits (77), Expect = 0.001
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 191 RPYSCDI--CGKAFRRQDHLRDHR 212
+P+ C C K++ R ++L+ H
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHL 24
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 35.3 bits (82), Expect = 2e-04
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 191 RPYSCDICGKAFRRQDHLRDHR 212
+PY C CGKAF + L +H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQ 22
Score = 33.7 bits (78), Expect = 8e-04
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHT 188
K + C C + F+++ L+ H+R HT
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 34.8 bits (80), Expect = 3e-04
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 190 ERPYSCDICGKAFRRQDHLRDH 211
E+P++CDICG+ F R D + H
Sbjct: 1 EKPFACDICGRKFARSDERKRH 22
Score = 26.3 bits (58), Expect = 0.28
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTH 187
+K F C C R+F +S H + H
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIH 26
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 34.6 bits (80), Expect = 3e-04
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHT 188
+ ++C F CN++F +S NL H TH
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 31.9 bits (73), Expect = 0.003
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 191 RPYSCDI--CGKAFRRQDHLRDHR 212
RPY C C K F + +L+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHI 24
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 34.3 bits (78), Expect = 5e-04
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 160 RPKKQFICKFCNRQFTKSYNLLIHERTHTDERPYS 194
R +KQ C+ C + F Y+L H+ +H+ E+PYS
Sbjct: 1 RTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYS 35
Score = 28.9 bits (64), Expect = 0.042
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 191 RPYSCDICGKAFRRQDHLRDHR 212
+ +C+ICGK FR HL H+
Sbjct: 4 KQVACEICGKIFRDVYHLNRHK 25
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 33.9 bits (78), Expect = 6e-04
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHTDE 190
K F C F C ++F+ +NL H R HT +
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 32.3 bits (74), Expect = 0.002
Identities = 9/23 (39%), Positives = 12/23 (52%), Gaps = 2/23 (8%)
Query: 191 RPYSCDI--CGKAFRRQDHLRDH 211
+P+ C CGK F +LR H
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTH 23
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 33.4 bits (77), Expect = 0.001
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 191 RPYSCDI--CGKAFRRQDHLRDHR 212
RPY+C + C + F R L H
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHI 24
Score = 33.1 bits (76), Expect = 0.001
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 163 KQFICKF--CNRQFTKSYNLLIHERTHT 188
+ + C C+R+F++S +L H R HT
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 32.8 bits (75), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 161 PKKQFICKFCNRQFTKSYNLLIHERTHTDER 191
P + + C FC R+F + L H H +R
Sbjct: 2 PPRSYTCSFCKREFRSAQALGGHMNVHRRDR 32
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 31.8 bits (72), Expect = 0.005
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 180 LLIHERTHTDERPYSCDIC--GKAFRRQDHLRDHR 212
+ ++ + C K F+R+ ++R H
Sbjct: 6 SIDKYVKEMPDKTFECLFPGCTKTFKRRYNIRSHI 40
Score = 29.1 bits (65), Expect = 0.041
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDER 191
C + F + YN+ H +TH ++R
Sbjct: 23 FPGCTKTFKRRYNIRSHIQTHLEDR 47
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 30.6 bits (69), Expect = 0.011
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 164 QFICKFCNRQFTKSYNLLIHERTHTDER 191
++IC+ C + K L H RTHTD R
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 30.2 bits (68), Expect = 0.016
Identities = 10/27 (37%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 188 TDERPYSCDI--CGKAFRRQDHLRDHR 212
+D++P+ C CG+ F +DHL H+
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVHK 28
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 30.0 bits (67), Expect = 0.020
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 4/26 (15%)
Query: 190 ERPYSCDICGKAFRRQD----HLRDH 211
E+PYSC +CG F+R+D H+R H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 29.7 bits (66), Expect = 0.023
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 192 PYSCDICGKAFRRQDHLRDH 211
P+ C++CGK F R+D L+ H
Sbjct: 1 PHKCEVCGKCFSRKDKLKTH 20
Score = 25.0 bits (54), Expect = 1.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 167 CKFCNRQFTKSYNLLIHERTHT 188
C+ C + F++ L H R HT
Sbjct: 4 CEVCGKCFSRKDKLKTHMRCHT 25
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 29.3 bits (66), Expect = 0.033
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Query: 163 KQFICKF--CNRQ---FTKSYNLLIHERTHTDE 190
K+F+C + C+R+ F Y L++H R HT E
Sbjct: 1 KEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGE 33
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 28.5 bits (63), Expect = 0.055
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 167 CKFCNRQFTKSYNLLIHERTHTDER 191
C C+++F Y L +H R HT E+
Sbjct: 3 CPTCHKKFLSKYYLKVHNRKHTGEK 27
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 28.5 bits (64), Expect = 0.11
Identities = 9/23 (39%), Positives = 10/23 (43%)
Query: 164 QFICKFCNRQFTKSYNLLIHERT 186
C C R F S NL H R+
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRS 37
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 26.7 bits (59), Expect = 0.23
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 192 PYSCDICGKAFRRQDHLRDH 211
PY C +C +AF R+D L H
Sbjct: 1 PYPCGLCNRAFTRRDLLIRH 20
Score = 22.5 bits (48), Expect = 7.6
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 165 FICKFCNRQFTKSYNLLIHER 185
+ C CNR FT+ L+ H +
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQ 22
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 27.0 bits (59), Expect = 0.24
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 188 TDERPYSCDICGKAFRRQDHLRDHR 212
T +PY C+IC K F +D H
Sbjct: 1 TGIKPYECNICAKRFMWRDSFHRHV 25
>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 53
Score = 26.9 bits (59), Expect = 0.34
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
C +CGK F + LR H
Sbjct: 7 LPCGLCGKVFTDANRLRQH 25
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 25.5 bits (55), Expect = 0.78
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 190 ERPYSCDICGKAFRRQDHLRDH 211
E+ ++C +C + FRR+ LR H
Sbjct: 2 EQVFTCSVCQETFRRRMELRLH 23
Score = 24.3 bits (52), Expect = 1.7
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 165 FICKFCNRQFTKSYNLLIHERTHTDE 190
F C C F + L +H +HT E
Sbjct: 5 FTCSVCQETFRRRMELRLHMVSHTGE 30
>d1nnqa2 g.41.5.1 (A:135-171) Rubrerythrin, C-terminal domain
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 37
Score = 25.4 bits (56), Expect = 0.83
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 13/38 (34%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICG 199
KK +IC C T DE P C +CG
Sbjct: 3 KKVYICPICGY-------------TAVDEAPEYCPVCG 27
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 24.6 bits (53), Expect = 1.3
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 192 PYSCDICGKAFRRQDHLRDH 211
P+ C CGK + R+++L +H
Sbjct: 1 PFECPKCGKCYFRKENLLEH 20
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 24.7 bits (53), Expect = 1.4
Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 165 FICKF--CNRQFTKSYNLLIHERTHT 188
++C F C + F K L +H+ +HT
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHT 27
>d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium
album), strain limber [TaxId: 37998]}
Length = 279
Score = 27.0 bits (58), Expect = 1.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 81 AAAHAAAAAAMLLP-HPTPPHSLLDGLPNTSSP---YGFPPGS 119
A H A AA L+ T S + +T++ P G+
Sbjct: 226 ATPHVAGLAAYLMTLGKTTAASACRYIADTANKGDLSNIPFGT 268
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (51), Expect = 2.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 163 KQFICKFCNRQFTKSYNLLIHERTHTDE 190
+ +C C + F +S L H+ HT E
Sbjct: 1 RVHVCAECGKAFVESSKLKRHQLVHTGE 28
Score = 23.0 bits (49), Expect = 5.5
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 191 RPYSCDICGKAFRRQDHLRDH 211
R + C CGKAF L+ H
Sbjct: 1 RVHVCAECGKAFVESSKLKRH 21
>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp.,
AK.1 [TaxId: 1409]}
Length = 280
Score = 26.4 bits (57), Expect = 2.6
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 2/40 (5%)
Query: 78 ACVAAAHAAAAAAMLL-PHPTPPHSLLDGLPNTSSPYGFP 116
+A+ H A AA+L + + T+
Sbjct: 225 TSMASPHVAGLAALLASQGRNNI-EIRQAIEQTADKISGT 263
>d1wiia_ g.41.3.4 (A:) Hypothetical UPF0222 protein MGC4549 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 85
Score = 25.1 bits (55), Expect = 2.8
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 154 APGRASRPK--KQFICKFCNRQFTKSYNLLIHERTHTDERPYSCDICGKAF 202
P + QF C FCN + KS ++ + +T SC +C + F
Sbjct: 11 PPKKKMTGTLETQFTCPFCNHE--KSCDVKMDRARNTGV--ISCTVCLEEF 57
>d1vr6a1 c.1.10.4 (A:1-338)
3-deoxy-D-arabino-heptulosonate-7-phosphate synthase
(DAHP synthase, AroG) {Thermotoga maritima [TaxId:
2336]}
Length = 338
Score = 26.2 bits (57), Expect = 3.2
Identities = 12/74 (16%), Positives = 28/74 (37%), Gaps = 3/74 (4%)
Query: 46 VVPTRSIHMYQGDELMAMMADKRKELALREEAACVAAAHAAAAAAMLL--PHPTPPHSLL 103
+ ++ + + + + ++ D R+ ++ A A A ++ HP P +L
Sbjct: 249 TLDISAVPIIRKESHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPEPEKALS 308
Query: 104 DGLPNTSSPYGFPP 117
DG + F
Sbjct: 309 DG-KQSLDFELFKE 321
>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto
virus [TaxId: 103782]}
Length = 395
Score = 26.1 bits (57), Expect = 3.5
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 116 PPGSNPSTSSSFPFPGSSSSLFPGTSST 143
G+ P+T P+P ++ F G S
Sbjct: 116 AVGAQPTTFVGVPYPT-YATNF-GAGSQ 141
>d1o60a_ c.1.10.4 (A:) 3-deoxy-D-manno-octulosonate 8-phosphate
synthase (KDO8P synthase) {Haemophilus influenzae
[TaxId: 727]}
Length = 281
Score = 25.8 bits (55), Expect = 4.2
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 78 ACVAAAHAAAAAAMLLPHPTPPHSLLDG 105
+ A L HP P + DG
Sbjct: 223 LARSGLAVGIAGLFLEAHPNPNQAKCDG 250
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 25.9 bits (57), Expect = 4.5
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 81 AAAHAAAAAAMLLPHPTPPHSLLDGLPNTSSPYGFPPGSNPSTSSSF 127
AAA A ++ T SLLD +P ++ GF G +T +F
Sbjct: 171 AAAKQGADVIAVIR--TTGQSLLDYVPYGATTEGF--GGTYATQENF 213
>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha
{Human (Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.0 bits (52), Expect = 4.5
Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 7/45 (15%)
Query: 157 RASRPKKQFICKFCNRQFT--KSYNLLIHERTHTDERPYSCDICG 199
R S + F C C+ FT ++ L + C C
Sbjct: 7 RDSTNRASFKCPVCSSTFTDLEANQLFDPMTGT-----FRCTFCH 46
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 23.1 bits (49), Expect = 4.8
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 193 YSCDICGKAFRRQDHLRDH 211
Y C C K F R+D++ H
Sbjct: 2 YPCPFCFKEFTRKDNMTAH 20
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus
[TaxId: 5053]}
Length = 422
Score = 25.8 bits (56), Expect = 5.1
Identities = 9/40 (22%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 109 TSSPYGFPPGSNPS-------TSSSFPFPGSSSSLFPGTS 141
T++P G+ + + ++S P P +S +PG +
Sbjct: 376 TAAPSGYSATTMAADLATAFGLTASIPIPTIPTSFYPGLT 415
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.6 bits (51), Expect = 5.6
Identities = 5/29 (17%), Positives = 14/29 (48%)
Query: 160 RPKKQFICKFCNRQFTKSYNLLIHERTHT 188
+ + ++C C F ++ +H+ H+
Sbjct: 26 KDQHVYVCAVCQNVFCVDCDVFVHDSLHS 54
>d2ct5a1 g.37.1.6 (A:8-67) Zinc finger BED domain-containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 60
Score = 23.8 bits (51), Expect = 6.1
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 4/33 (12%)
Query: 162 KKQFICKFCNRQFTKS---YNLLIH-ERTHTDE 190
K+ C+ C Q S NL H E+ H +E
Sbjct: 20 WKKIYCRICMAQIAYSGNTSNLSYHLEKNHPEE 52
>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId:
7227]}
Length = 54
Score = 23.2 bits (49), Expect = 7.8
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 190 ERPYSCDICGKAFRRQDHLRDH 211
E+P +C IC R+ +LR H
Sbjct: 22 EQPATCPICYAVIRQSRNLRRH 43
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId:
8355]}
Length = 26
Score = 22.4 bits (47), Expect = 8.0
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 165 FICKFCNRQFTKSYNLLIHERTHTD 189
+ C C R F + L H+R H +
Sbjct: 1 YKCGLCERSFVEKSALSRHQRVHKN 25
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 29
Score = 22.3 bits (47), Expect = 8.0
Identities = 12/26 (46%), Positives = 13/26 (50%), Gaps = 4/26 (15%)
Query: 190 ERPYSCDICGKAFRRQD----HLRDH 211
ERP+ C IC A R HLR H
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSH 26
Score = 22.3 bits (47), Expect = 8.6
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 162 KKQFICKFCNRQFTKSYNLLIHERTHT 188
++ F C+ C S L +H R+HT
Sbjct: 1 ERPFKCQICPYASRNSSQLTVHLRSHT 27
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.131 0.403
Gapped
Lambda K H
0.267 0.0551 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 780,871
Number of extensions: 34829
Number of successful extensions: 258
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 89
Length of query: 212
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 131
Effective length of database: 1,295,466
Effective search space: 169706046
Effective search space used: 169706046
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.8 bits)