Query psy8697
Match_columns 508
No_of_seqs 433 out of 1381
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 16:55:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8697.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/8697hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 7.2E-45 2.5E-49 377.6 33.9 400 40-508 34-479 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 2E-35 7E-40 302.8 22.2 373 34-491 44-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 7.9E-33 2.7E-37 282.5 33.1 344 36-486 44-427 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.1E-30 7.1E-35 268.8 31.6 396 48-498 49-478 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.6E-30 5.6E-35 260.0 11.4 344 34-484 16-368 (375)
6 2xut_A Proton/peptide symporte 99.9 1.2E-25 4E-30 235.1 25.6 135 51-187 51-195 (524)
7 2cfq_A Lactose permease; trans 99.9 2E-27 6.7E-32 241.4 10.7 361 39-499 28-407 (417)
8 2gfp_A EMRD, multidrug resista 99.2 3.2E-11 1.1E-15 119.7 11.5 164 280-498 16-181 (375)
9 3o7q_A L-fucose-proton symport 99.2 7.1E-11 2.4E-15 119.6 13.2 165 280-496 42-235 (438)
10 1pw4_A Glycerol-3-phosphate tr 99.2 1.4E-10 4.9E-15 117.8 14.7 151 38-188 272-431 (451)
11 2cfq_A Lactose permease; trans 99.2 4.9E-11 1.7E-15 120.4 10.7 143 52-196 257-405 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.1 2E-10 6.7E-15 118.3 13.1 156 280-490 29-195 (491)
13 4gc0_A D-xylose-proton symport 99.1 4.2E-10 1.5E-14 115.8 13.2 156 39-195 298-467 (491)
14 2xut_A Proton/peptide symporte 99.0 1.2E-09 4.2E-14 113.3 13.0 155 280-488 28-195 (524)
15 2g9p_A Antimicrobial peptide l 34.0 11 0.00037 19.6 0.4 13 74-86 3-15 (26)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=7.2e-45 Score=377.65 Aligned_cols=400 Identities=24% Similarity=0.421 Sum_probs=320.0
Q ss_pred HHhhhccccc-------ccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh---------
Q psy8697 40 YLKYLTRHYI-------VMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL--------- 103 (508)
Q Consensus 40 ~~~~i~~~~~-------~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~--------- 103 (508)
.+|.+++++. +.+..+.|++.+++.+|..+|++++|+++||+|||++++++.+++.++++++++
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~ 113 (491)
T 4gc0_A 34 TVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSIN 113 (491)
T ss_dssp THHHHHHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSS
T ss_pred HHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3566655543 134456789999999999999999999999999999999999999999999994
Q ss_pred ---------cCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh------
Q psy8697 104 ---------ADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL------ 167 (508)
Q Consensus 104 ---------~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l------ 167 (508)
+++ ++.++++|+++|++.|...+ ..++++|+.|+++|++..++.+.+..+|.++++.++...
T Consensus 114 ~~~~~~~~~a~~--~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 191 (491)
T 4gc0_A 114 PDNTVPVYLAGY--VPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDA 191 (491)
T ss_dssp SSSSCCGGGGGC--HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred chhHHHHHHhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcccccc
Confidence 678 99999999999999999999 999999999999999999999999999999999988765
Q ss_pred ------hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhh
Q psy8697 168 ------DWRSLSYCFLALVLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTR 241 (508)
Q Consensus 168 ------~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (508)
.||..+.+..++.++ .++..+++||||+|+..+ ++.+++.+.+++.+.+++..++..+..++.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~peSp~~L~~~-------~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~--- 260 (491)
T 4gc0_A 192 SWLNTDGWRYMFASECIPALL-FLMLLYTVPESPRWLMSR-------GKQEQAEGILRKIMGNTLATQAVQEIKHSL--- 260 (491)
T ss_dssp TTTTTTHHHHHHHTTHHHHHH-HHHHGGGSCCCHHHHHHT-------TCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred ccccchhhHHHhhhhhhhhhh-hhhhhhcCCCChHHHHHc-------CchhHHHHhHHHhcCCchhHHHHHHHHHHH---
Confidence 689888888888887 777888999999999999 888888888777665433332222111111
Q ss_pred hhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHH
Q psy8697 242 YDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTV 320 (508)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~ 320 (508)
++.++...... .++ .++.........+.+..+.+.+..|.+.+.+..+.+... .......++..+++.+++++
T Consensus 261 -~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (491)
T 4gc0_A 261 -DHGRKTGGRLL-MFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIM 334 (491)
T ss_dssp -HHHHHHTTHHH-HSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhhhhhHHH-Hhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence 01111111111 221 234556666677778888888899999998887665444 35667778889999999999
Q ss_pred hhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCC
Q psy8697 321 LARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHS 400 (508)
Q Consensus 321 l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (508)
+.||+|||+.++.+...+.++.+.+. ......
T Consensus 335 l~dr~Grr~~~~~~~~~~~~~~~~l~-----------------~~~~~~------------------------------- 366 (491)
T 4gc0_A 335 TVDKFGRKPLQIIGALGMAIGMFSLG-----------------TAFYTQ------------------------------- 366 (491)
T ss_dssp HHHHHCSHHHHHHHHHHHHHHHHHHH-----------------HHHHTT-------------------------------
T ss_pred HHHhhcCcchhccchHHHHHHHHHHH-----------------HHHhcc-------------------------------
Confidence 99999999999999888888887776 322211
Q ss_pred CCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-------ccchh
Q psy8697 401 SLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-------SVIGT 473 (508)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-------g~~~~ 473 (508)
...+..++...++..+++.+..++.+.+.+|++|++.|+++.|+.+..+++++++++.+++.+.+. +....
T Consensus 367 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~ 444 (491)
T 4gc0_A 367 --APGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFS 444 (491)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHH
T ss_pred --cchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 134455556666677778888899999999999999999999999999999999999998877543 45667
Q ss_pred HHHHHHHHHHhhheeEEEeccCCCCChHHHHhhhC
Q psy8697 474 FNVFGLVSFTLVGFVYFYLPETKGKTFVEIEKYFS 508 (508)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (508)
|++++++++++.++.++++||||+|++||+|+.||
T Consensus 445 ~~i~~~~~~~~~i~~~~~~PETkg~tLeei~~~f~ 479 (491)
T 4gc0_A 445 YWIYGCMGVLAALFMWKFVPETKGKTLEELEALWE 479 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCTTCCHHHHGGGTC
T ss_pred HHHHHHHHHHHHHHHHheecCCCCCCHHHHHHHhC
Confidence 88999999999988889999999999999999986
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=2e-35 Score=302.75 Aligned_cols=373 Identities=13% Similarity=0.125 Sum_probs=277.8
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHh----cCCcch
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTIL----ADPGNI 109 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~----~~~~~~ 109 (508)
...+.+.+|.+.+++ .++.+.|++.+++.++..++++++|+++||+|||++++++.++.+++.+++++ +++ +
T Consensus 44 ~~~~~~~~~~~~~~~--~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~ 119 (451)
T 1pw4_A 44 RKNFALAMPYLVEQG--FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSS--I 119 (451)
T ss_dssp HTSHHHHHHHTTSST--TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSS--S
T ss_pred HHHHHHHHHHHHHHh--ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcccc--H
Confidence 344577789998887 79999999999999999999999999999999999999999999999999999 999 9
Q ss_pred HHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----h-hHHHHHHHHHHHHHH
Q psy8697 110 ELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----D-WRSLSYCFLALVLIS 183 (508)
Q Consensus 110 ~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~-wr~~f~~~~~~~~~~ 183 (508)
+.++++|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|.+++|.+++.+ + ||+.|++.+++.++.
T Consensus 120 ~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~ 199 (451)
T 1pw4_A 120 AVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILV 199 (451)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999999999999999999 999999999999999999999999999999999999875 7 999999999998886
Q ss_pred HHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccch
Q psy8697 184 GLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYK 263 (508)
Q Consensus 184 ~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (508)
.++.++++||+|++...+++++. +++.++ + .++. ++++....+...++.++++..+.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----------------~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 256 (451)
T 1pw4_A 200 ALFAFAMMRDTPQSCGLPPIEEY-KNDYPD----------------D----YNEK--AEQELTAKQIFMQYVLPNKLLWY 256 (451)
T ss_dssp HHHHHHHCCCSSTTTCCCSCTTT-CCC-----------------------------------CCTHHHHHHTSSCHHHHH
T ss_pred HHHHHhhccCCHhhcCCCChhhh-cccccc----------------c----chhh--hhcccccccchHHHHHcCHHHHH
Confidence 77777889998865322211000 000000 0 0000 00011111111222555554333
Q ss_pred hHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhccc--CCeeehhhhhhHHH
Q psy8697 264 PLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGF--GRKQLLIVSAAGLG 339 (508)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~--grr~~l~~~~~~~~ 339 (508)
..+..+...........+.|.++++ .|.+... .......+++.+++.++.+++.||+ +||+.+..+..+..
T Consensus 257 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 257 -----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 2222222233356677889999887 6776544 4677778888999999999999999 99988877776666
Q ss_pred -HHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHH
Q psy8697 340 -VSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFF 418 (508)
Q Consensus 340 -~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (508)
++.+.+. . ... ...+.......+.+.+
T Consensus 332 ~~~~~~~~-----------------~-~~~----------------------------------~~~~~~~~~~~~~g~~ 359 (451)
T 1pw4_A 332 TIATIVYW-----------------M-NPA----------------------------------GNPTVDMICMIVIGFL 359 (451)
T ss_dssp HHHHHHTT-----------------S-CCT----------------------------------TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-----------------H-hcc----------------------------------cCHHHHHHHHHHHHHH
Confidence 5554444 2 110 0223333333333333
Q ss_pred HhhcchhhhHhhhhccCcccchhhHHHHHHHHHHH-HHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEE
Q psy8697 419 SAVGVIVIPWTMISELLPSYARGVCSGLMISYGYV-CMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFY 491 (508)
Q Consensus 419 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~-g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~ 491 (508)
.....+....++.|.+|++.|+++.|+.+...++ |..++|.+.|.+.+. |+...|++.+++.+++.++.+..
T Consensus 360 -~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 360 -IYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp -HTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455568999999999999999999999999 999999999999998 98889988888887776655443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=7.9e-33 Score=282.49 Aligned_cols=344 Identities=13% Similarity=0.063 Sum_probs=263.7
Q ss_pred hhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHH---HhcCCcchHHH
Q psy8697 36 YYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLT---ILADPGNIELL 112 (508)
Q Consensus 36 ~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~---~~~~~~~~~~l 112 (508)
...+.+|.+.++++ .++.+.|++.+.+.++..++++++|+++||+|||++++.+.++.+++.+++ +++++ ++.+
T Consensus 44 ~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~--~~~l 120 (438)
T 3o7q_A 44 LNDILLPQFQQAFT-LTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMN--YTLF 120 (438)
T ss_dssp HHHHHHHHHHHHSC-CCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTC--HHHH
T ss_pred hHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhcccccc--HHHH
Confidence 45777899999988 999999999999999999999999999999999999999999999999999 88999 9999
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----h------------------
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----D------------------ 168 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~------------------ 168 (508)
+++|++.|++.+...+ ..+++.|++|+++|++++++.+.+.++|.++++.+++.+ +
T Consensus 121 ~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 200 (438)
T 3o7q_A 121 LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAY 200 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhh
Confidence 9999999999999999 999999999999999999999999999999999998877 2
Q ss_pred -------hHHHHHHHHHHHHHHHHhhhh-cCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhh
Q psy8697 169 -------WRSLSYCFLALVLISGLVLIC-FAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRT 240 (508)
Q Consensus 169 -------wr~~f~~~~~~~~~~~~~~~~-~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (508)
||+.|++.+++.++..++..+ ..||+++...++ +
T Consensus 201 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~-------~------------------------------- 242 (438)
T 3o7q_A 201 KHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDNHSD-------A------------------------------- 242 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTCCCC-------S-------------------------------
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccccccc-------c-------------------------------
Confidence 999998888777764444333 345554210000 0
Q ss_pred hhhhhhhhHHHHHHHhcCcccchhHHHHHHHHHHHhhcccchhhhcHHHH-HHHh-CCcchh-hHHHHHHHHHHHHHHHH
Q psy8697 241 RYDETRNKKALWRQILTTRECYKPLILLVILFTLQQFTGVYPVIFYAMQL-FKEV-GTEIDE-SHALVFLGIIRFGMSVV 317 (508)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-g~~~~~-~~~~~~~~~~~~~~~~~ 317 (508)
++++..+...+ .+++|..+...+...+ ..........|.|.+ +++. |.+... ........++.+++.++
T Consensus 243 --~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 314 (438)
T 3o7q_A 243 --KQGSFSASLSR-LARIRHWRWAVLAQFC-----YVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFT 314 (438)
T ss_dssp --STTSHHHHHHH-HTTCSHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccchhhhHHH-HHhChHHHHHHHHHHH-----HHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 01111122233 7777765443322222 222245567888988 7774 776554 46677778889999999
Q ss_pred HHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccc
Q psy8697 318 TTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCV 397 (508)
Q Consensus 318 ~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (508)
.+++.||+|||+.+..+.++..++.+.+. ..
T Consensus 315 ~g~l~~r~~~~~~~~~~~~~~~~~~~~~~-----------------~~-------------------------------- 345 (438)
T 3o7q_A 315 GTWLISRFAPHKVLAAYALIAMALCLISA-----------------FA-------------------------------- 345 (438)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHHHH-----------------HC--------------------------------
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHHH-----------------Hc--------------------------------
Confidence 99999999999999988888877776666 31
Q ss_pred cCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-c-cchhHH
Q psy8697 398 DHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-S-VIGTFN 475 (508)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g-~~~~~~ 475 (508)
..........+.+.+. ....+..+++..|.+|++ ++.+.++.. .+.+|+.++|.+.|.+.+. | +...|.
T Consensus 346 ------~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~ 416 (438)
T 3o7q_A 346 ------GGHVGLIALTLCSAFM-SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAEL 416 (438)
T ss_dssp ------CHHHHHHHHHHHHHHH-TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGH
T ss_pred ------CCcHHHHHHHHHHHHH-HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 1122233333333333 334567778889999977 888888877 7789999999999999999 7 888888
Q ss_pred HHHHHHHHhhh
Q psy8697 476 VFGLVSFTLVG 486 (508)
Q Consensus 476 ~~~~~~~~~~~ 486 (508)
+.+++.++..+
T Consensus 417 ~~~~~~~~~~~ 427 (438)
T 3o7q_A 417 IPALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 76665555443
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.98 E-value=2.1e-30 Score=268.84 Aligned_cols=396 Identities=13% Similarity=0.002 Sum_probs=248.8
Q ss_pred ccccCCccchhHHHHHHHHHhhhhhchhhhhhc-ccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhH
Q psy8697 48 YIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDY-IGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMS 126 (508)
Q Consensus 48 ~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr-~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~ 126 (508)
++ .+..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.++++++++ ++.++++|+++|++.+..
T Consensus 49 ~~-~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 49 LH-ITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFG--ASALFGSIILIIIGTGFL 125 (491)
T ss_dssp CC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCS--TTHHHHHHHHHHHHHHHH
T ss_pred cC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHHHHhc
Confidence 66 899999999999999999999999999999 89999999999999999999999999 999999999999999999
Q ss_pred HH-HHHHhhhccCCCC--chhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCchhhh
Q psy8697 127 TV-AMVYVSEICHENF--RPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPHWLI 199 (508)
Q Consensus 127 ~~-~~~~i~e~~~~~~--rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~~~~ 199 (508)
.+ ..++++|++|+++ |+.++++++.+.++|..++|.+++.+ +||+.|++.++..++..++..+..|+..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~--- 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD--- 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC---
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc---
Confidence 99 9999999999999 77788889999999999999999987 89999999887777644443333232111
Q ss_pred hcccccchhhhHHHHHHHHHH----------------HhCChhhhHHH-H-HHHHHhhhhhhhhhhhH-HHHHHHhcCcc
Q psy8697 200 NMDRTANVNKRMAKAEKSLKF----------------LNRNPEIFEKE-W-RVLCQVRTRYDETRNKK-ALWRQILTTRE 260 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 260 (508)
++.+.++...+.++.++..+. ..+..+..+.. . ................+ ...+...+ ++
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 281 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEH-LR 281 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHH-HH
Confidence 110011111122222221111 11111100000 0 00000000000000000 00000001 11
Q ss_pred cchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCc-chhhHHHHHHHHHHHHHHHHHHHhhcccCCeeehh-----h
Q psy8697 261 CYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTE-IDESHALVFLGIIRFGMSVVTTVLARGFGRKQLLI-----V 333 (508)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~-~~~~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~-----~ 333 (508)
... .... .+..............+.+.+.++ .+.+ .+........++..+++.++.+++.||++||+... .
T Consensus 282 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 282 VVS-YIPL-FIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp CTT-HHHH-HHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHH-HHHH-HHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 111 1111 111111122234455667777776 4444 23445666777888888999999999999997655 5
Q ss_pred hhhHHHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHH
Q psy8697 334 SAAGLGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFIL 413 (508)
Q Consensus 334 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (508)
+..+.+++.+.+. ....... .......+.......
T Consensus 360 ~~~~~~~~~~~~~-----------------~~~~~~~----------------------------~~~~~~~~~~~~~~~ 394 (491)
T 4aps_A 360 GLMFAGLSFLLMA-----------------IPGALYG----------------------------TSGKVSPLWLVGSWA 394 (491)
T ss_dssp HHHHHHHHHTTTH-----------------HHHHHCC----------------------------CCTTCCTHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----------------HHHHhcC----------------------------CCCCccHHHHHHHHH
Confidence 5555555554444 2110000 000113333333333
Q ss_pred HHHHHHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhhccchhHHHHHHHHHHhhheeEEEec
Q psy8697 414 LYVFFSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHSSVIGTFNVFGLVSFTLVGFVYFYLP 493 (508)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
+.+.+. ....+....++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+.++...|..++++++++.++.++..+
T Consensus 395 l~g~~~-~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (491)
T 4aps_A 395 LVILGE-MLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSK 473 (491)
T ss_dssp HHHHHH-HTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC--
T ss_pred HHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333 3345666799999999999999999999999999999999999988877777888888888777666666566
Q ss_pred cCCCC
Q psy8697 494 ETKGK 498 (508)
Q Consensus 494 ~~~~~ 498 (508)
+.+++
T Consensus 474 ~~~~~ 478 (491)
T 4aps_A 474 RIQGL 478 (491)
T ss_dssp -----
T ss_pred HHHHH
Confidence 55543
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.96 E-value=1.6e-30 Score=260.02 Aligned_cols=344 Identities=14% Similarity=0.155 Sum_probs=247.5
Q ss_pred hhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q psy8697 34 LFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLY 113 (508)
Q Consensus 34 ~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~ 113 (508)
...+.|.+|.+.++++ .++.+.+++.+.+.++..++++++|+++||+|||++++.+..+..++.++.+++++ ++.++
T Consensus 16 ~~~~~~~~~~~~~~~g-~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~--~~~l~ 92 (375)
T 2gfp_A 16 QTIYIPAIADMARDLN-VREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSS--LTVLI 92 (375)
T ss_dssp HHHHHHHHHHHHTTSS-STTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHhhhhHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhcc--HHHHH
Confidence 3445777888988888 99999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
+.|++.|++.+...+ ..+++.|++|+++|++++++.+.+..+|..++|.+++.+ +||+.|++.+++.++..+...
T Consensus 93 ~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (375)
T 2gfp_A 93 AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMA 172 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999988 899999999998888555567
Q ss_pred hcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHHHH
Q psy8697 189 CFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLILL 268 (508)
Q Consensus 189 ~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (508)
+.+||+++...++ ++..++..+ .+++|..+...+..
T Consensus 173 ~~~~~~~~~~~~~-------------------------------------------~~~~~~~~~-~~~~~~~~~~~~~~ 208 (375)
T 2gfp_A 173 RWMPETRPVDAPR-------------------------------------------TRLLTSYKT-LFGNSGFNCYLLML 208 (375)
T ss_dssp CSSCCCSTTTCCC-------------------------------------------CCTTTCSTH-HHHHHHHHHHHHHH
T ss_pred HHCcccCCCCccc-------------------------------------------ccHHHHHHH-HhcCcchHHHHHHH
Confidence 7888876431100 000011111 44444333322221
Q ss_pred HHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhH-HHHHHHHH
Q psy8697 269 VILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG-LGVSSILL 345 (508)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~-~~~~~~~l 345 (508)
. ...........+.|.++++ .|.+... .......+++.+++.++.+++.||.+++ +..+... ...+...+
T Consensus 209 ~-----~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~ 281 (375)
T 2gfp_A 209 I-----GGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMW 281 (375)
T ss_dssp H-----HHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSS
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 1 1222244556667777666 5554433 4566677788888899999999998772 2222222 11111110
Q ss_pred hhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchh
Q psy8697 346 SSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIV 425 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (508)
. . ...+ ..+.+...+...+.+.+.+. ..+
T Consensus 282 ~-----------------~-~~~~--------------------------------~~~~~~~~~~~~l~g~~~~~-~~~ 310 (375)
T 2gfp_A 282 I-----------------P-DWFG--------------------------------VMNVWTLLVPAALFFFGAGM-LFP 310 (375)
T ss_dssp H-----------------H-HHHH--------------------------------HHHHHHHHHHHHHHHHHHHH-TSS
T ss_pred H-----------------H-hhhc--------------------------------cccHHHHHHHHHHHHHHHHH-hhH
Confidence 1 0 0000 00223233333334444333 456
Q ss_pred hhHhhhhccCcccchhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHh
Q psy8697 426 IPWTMISELLPSYARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTL 484 (508)
Q Consensus 426 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~ 484 (508)
...++..|..| +.|+++.|+.+...++|..++|.+.|.+.+. ++...+.. .++.+++
T Consensus 311 ~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~-~~~~~~~ 368 (375)
T 2gfp_A 311 LATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM-TLMGLLI 368 (375)
T ss_dssp TTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH-HHHHHHH
Confidence 66689999998 8899999999999999999999999999887 66555544 3444443
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.94 E-value=1.2e-25 Score=235.05 Aligned_cols=135 Identities=10% Similarity=0.096 Sum_probs=124.6
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcc-cchhHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHhhcchhhHHH
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYI-GRKWSLILVCVPYIISSLLTILAD-PGNIELLYLSKICAGIGGGMSTV 128 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~-Grk~~l~~~~~~~~i~~~l~~~~~-~~~~~~l~~~r~l~G~~~g~~~~ 128 (508)
.++.+.|++.+.+.++..++++++|+++||+ |||+++..+.++.+++.++.++++ + ++.++++|++.|++.+...+
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~ 128 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHS--VQGFYTGLFLIALGSGGIKP 128 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHTTHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHhccccch
Confidence 7899999999999999999999999999999 999999999999999999999999 8 99999999999999999999
Q ss_pred -HHHHhhhccCCCCchhHHHH---HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhh
Q psy8697 129 -AMVYVSEICHENFRPAILCL---NSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 129 -~~~~i~e~~~~~~rg~~~~~---~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~ 187 (508)
..+++.|++|+++|+++.+. .+.+.++|..++|.+++.+ +||+.|++.+++.++..++.
T Consensus 129 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 129 LVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877666 8899999999999998877 89999999888877734333
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.94 E-value=2e-27 Score=241.36 Aligned_cols=361 Identities=14% Similarity=0.095 Sum_probs=226.6
Q ss_pred HHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHH---HHHhcCCcch-HHHH
Q psy8697 39 VYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSL---LTILADPGNI-ELLY 113 (508)
Q Consensus 39 ~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~---l~~~~~~~~~-~~l~ 113 (508)
|.+|. ++++++ .++.+.|++.+...++..++++++|+++||+|||++++.+..++.++.. ...+++. . ..+.
T Consensus 28 ~~~~~~l~~~~g-~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 104 (417)
T 2cfq_A 28 PFFPIWLHDINH-ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPL--LQYNIL 104 (417)
T ss_dssp TTHHHHHHTTTC-CCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHH--HHTTCC
T ss_pred HHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Confidence 34554 445566 8999999999999999999999999999999999999988887755321 1122221 1 1234
Q ss_pred HHHHHhhcchhhHHH-HHHHhhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHhh
Q psy8697 114 LSKICAGIGGGMSTV-AMVYVSEICHE--NFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLVL 187 (508)
Q Consensus 114 ~~r~l~G~~~g~~~~-~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~~ 187 (508)
..+++.|++.+...+ ....+.++.++ ++|+...+.......+|..++|.+++.+ +||..|++.+++.++ .++.
T Consensus 105 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~-~~~~ 183 (417)
T 2cfq_A 105 VGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALI-LAVL 183 (417)
T ss_dssp HHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTT-HHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHH-HHHH
Confidence 566677776666554 44444444432 3556677777777788888999888877 799999988777655 3333
Q ss_pred hhcCC-CCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 188 ICFAP-ESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 188 ~~~l~-esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
.++.+ |+|+. .+++ ++. ++++++...+...+ .++++..+...+
T Consensus 184 ~~~~~~~~~~~-~~~~------~~~----------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~ 227 (417)
T 2cfq_A 184 LFFAKTDAPSS-ATVA------NAV----------------------------GANHSAFSLKLALE-LFRQPKLWFLSL 227 (417)
T ss_dssp SCSSCCCCSCS-SCSS------SSS----------------------------SSCCCCCCHHHHHH-HTTCHHHHHHHH
T ss_pred HHHcCcccccc-cccc------ccc----------------------------ccccccccHHHHHH-HhcCCchhhHHH
Confidence 44444 43221 0000 000 00000111122233 666665443222
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHh-CCc---chh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEV-GTE---IDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~---~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
....... .+.....+.|.++.+. +.. ... .....+..+..+++.++.+++.||+|||+.+..+..+.+++
T Consensus 228 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~ 302 (417)
T 2cfq_A 228 YVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHH
Confidence 2111111 1223334567666552 211 111 23344555677888999999999999999888888777776
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+.+. .. .+.+...+...+......
T Consensus 303 ~~~~~-----------------~~-------------------------------------~~~~~~~~~~~l~~~~~~- 327 (417)
T 2cfq_A 303 IIGSS-----------------FA-------------------------------------TSALEVVILKTLHMFEVP- 327 (417)
T ss_dssp HHHHT-----------------TC-------------------------------------CSHHHHHHHTTHHHHHHH-
T ss_pred HHHHH-----------------Hh-------------------------------------ccHHHHHHHHHHHHHHHH-
Confidence 65555 20 022222222222222222
Q ss_pred cchhhhHhhhhccCcccchhhHHHHH-HHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLM-ISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~-~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
...+..+.++.|.+|++.||++.++. +..+++|++++|.+.|.+.+. ++...|.+.+++.+++.++.+...||+++.+
T Consensus 328 ~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 22334468999999999999999994 888899999999999999988 8888888888888887766665667665544
No 8
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.23 E-value=3.2e-11 Score=119.72 Aligned_cols=164 Identities=9% Similarity=-0.052 Sum_probs=126.4
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
........|.+.++.|.+.+. ........+...++.++.|+++||+|||+.+..+..+..++.+...
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~------------ 83 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV------------ 83 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH------------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH------------
Confidence 344455567766677776554 4677788888999999999999999999999999999988888777
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
.. ++.+...+...+.+.+ .....+...+++.|.+|++
T Consensus 84 -----~~-------------------------------------~~~~~l~~~~~l~g~~-~~~~~~~~~~~~~~~~~~~ 120 (375)
T 2gfp_A 84 -----TT-------------------------------------SSLTVLIAASAMQGMG-TGVGGVMARTLPRDLYERT 120 (375)
T ss_dssp -----HH-------------------------------------HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTS
T ss_pred -----Hh-------------------------------------ccHHHHHHHHHHHHHH-HHhhhhhHHHHHHHHCCHH
Confidence 31 1223333333333333 3334566679999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCC
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGK 498 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (508)
+|+++.++.+....+|..++|.+.+.+.+. +|+..|.+.+++.++..+...+..||++++
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (375)
T 2gfp_A 121 QLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV 181 (375)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence 999999999999999999999999999988 999999988888888777666677776543
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.21 E-value=7.1e-11 Score=119.63 Aligned_cols=165 Identities=9% Similarity=-0.023 Sum_probs=121.5
Q ss_pred cchhhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhccccccccccc
Q psy8697 280 VYPVIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNC 358 (508)
Q Consensus 280 ~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (508)
........|.+.++.|.+... ........++..++.++.|+++||+|||+.+..+.++.+++.++..
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~------------ 109 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFW------------ 109 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH------------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHH------------
Confidence 345666788887888886655 5777888888999999999999999999999999999999888873
Q ss_pred cccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCccc
Q psy8697 359 AIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSY 438 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 438 (508)
..... .+.+..++..++.+.+.+ ...+...+++.|.+|++
T Consensus 110 -----~~~~~----------------------------------~~~~~l~~~~~l~G~~~~-~~~~~~~~~~~~~~~~~ 149 (438)
T 3o7q_A 110 -----PAAEI----------------------------------MNYTLFLVGLFIIAAGLG-CLETAANPFVTVLGPES 149 (438)
T ss_dssp -----HHHHT----------------------------------TCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHSSCST
T ss_pred -----hcccc----------------------------------ccHHHHHHHHHHHHhhHH-HhhhhHHHHHHHHcCch
Confidence 11111 133444444444444443 34456679999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhHHHh-hh-c-------------------------cchhHHHHHHHHHHhhheeEE-
Q psy8697 439 ARGVCSGLMISYGYVCMFFMVKAFPFAI-HS-S-------------------------VIGTFNVFGLVSFTLVGFVYF- 490 (508)
Q Consensus 439 ~r~~~~g~~~~~~~~g~~i~~~~~g~l~-~~-g-------------------------~~~~~~~~~~~~~~~~~~~~~- 490 (508)
.|+++.++.+....+|..+++.+.+.+. +. + |.+.|.+.+++.++..++.++
T Consensus 150 ~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 150 SGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 54 3 677887766666555443332
Q ss_pred EeccCC
Q psy8697 491 YLPETK 496 (508)
Q Consensus 491 ~~~~~~ 496 (508)
..||++
T Consensus 230 ~~p~~~ 235 (438)
T 3o7q_A 230 KFPALQ 235 (438)
T ss_dssp CCCCCT
T ss_pred cCCccc
Confidence 245543
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.20 E-value=1.4e-10 Score=117.76 Aligned_cols=151 Identities=11% Similarity=0.091 Sum_probs=126.9
Q ss_pred HHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcc--cchhHHHHHHHHHH-HHHHHHHhcCCcchHHHHH
Q psy8697 38 LVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYI--GRKWSLILVCVPYI-ISSLLTILADPGNIELLYL 114 (508)
Q Consensus 38 ~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~--Grk~~l~~~~~~~~-i~~~l~~~~~~~~~~~l~~ 114 (508)
....|.+.++..+.++.+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+.++.+.+.+.+
T Consensus 272 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (451)
T 1pw4_A 272 LDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI 351 (451)
T ss_dssp HHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHH
Confidence 34466665663338999999999999999999999999999999 99999888877776 6777666664212788888
Q ss_pred HHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHH-HHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhh
Q psy8697 115 SKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISC-GILLTTILNLYL----DWRSLSYCFLALVLISGLVLI 188 (508)
Q Consensus 115 ~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~l-G~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~ 188 (508)
.-++.|++.+...+ ...++.|.+|+++|+++.++.+....+ |..++|.+.+.+ +|+..|++.+++.++..++..
T Consensus 352 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~ 431 (451)
T 1pw4_A 352 CMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI 431 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888 999999999999999999999999999 999999999887 899999998888887444433
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.19 E-value=4.9e-11 Score=120.38 Aligned_cols=143 Identities=13% Similarity=0.088 Sum_probs=122.1
Q ss_pred CCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HH
Q psy8697 52 FGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AM 130 (508)
Q Consensus 52 s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~ 130 (508)
+....++..+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++ .+.+++..++.|++.+...+ ..
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~ 334 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--ALEVVILKTLHMFEVPFLLVGCF 334 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCS--HHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888888899999999999999999999999999998888888888888 88888889999998887777 88
Q ss_pred HHhhhccCCCCchhHHHH-HHHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCCch
Q psy8697 131 VYVSEICHENFRPAILCL-NSVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPESPH 196 (508)
Q Consensus 131 ~~i~e~~~~~~rg~~~~~-~~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~esp~ 196 (508)
.+++|.+|++.|+++.++ ++....+|..++|.+++.+ +++..|.+.+++.++..++.++..||.++
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 999999999999999998 4778889999999998877 78889998888888755555666776543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.15 E-value=2e-10 Score=118.35 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=119.1
Q ss_pred cchhhhcHHHHHHH------hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcc-cCCeeehhhhhhHHHHHHHHHhhcccc
Q psy8697 280 VYPVIFYAMQLFKE------VGTEIDE-SHALVFLGIIRFGMSVVTTVLARG-FGRKQLLIVSAAGLGVSSILLSSNLLM 351 (508)
Q Consensus 280 ~~~~~~~~~~~~~~------~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr-~grr~~l~~~~~~~~~~~~~l~~~~~~ 351 (508)
++....+.+.++++ .|.+... ........++..++.++.|+++|| +|||+.+..+.++.+++.++..
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~----- 103 (491)
T 4aps_A 29 YYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA----- 103 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH-----
Confidence 45566667777665 5665544 467778888999999999999999 8999999999999999888887
Q ss_pred ccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhh
Q psy8697 352 KSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMI 431 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (508)
.. .+.+...+...+.+.+.+. ..+...+++
T Consensus 104 ------------~~-------------------------------------~~~~~~~~~~~l~g~~~~~-~~~~~~~~~ 133 (491)
T 4aps_A 104 ------------LP-------------------------------------FGASALFGSIILIIIGTGF-LKPNVSTLV 133 (491)
T ss_dssp ------------SC-------------------------------------CSTTHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred ------------Hh-------------------------------------hhHHHHHHHHHHHHHHHHh-ccchHHHHH
Confidence 41 1333444444444443333 456667999
Q ss_pred hccCcccc--hhhHHHHHHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEE
Q psy8697 432 SELLPSYA--RGVCSGLMISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYF 490 (508)
Q Consensus 432 ~e~~p~~~--r~~~~g~~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~ 490 (508)
.|.+|++. |+.+.++.+....+|..++|.+.+.+.+. +|.+.|.+.++..+++.+..++
T Consensus 134 ~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 195 (491)
T 4aps_A 134 GTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYF 195 (491)
T ss_dssp HHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988 77888889999999999999999999997 9999998887777666555443
No 13
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=4.2e-10 Score=115.78 Aligned_cols=156 Identities=14% Similarity=-0.006 Sum_probs=111.9
Q ss_pred HHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHH
Q psy8697 39 VYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD--PGNIELLYLSK 116 (508)
Q Consensus 39 ~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~--~~~~~~l~~~r 116 (508)
.+.+.+.+..+ .+............+...++.++.+++.||+|||+.++.+.....++.+..+... ....+..++.-
T Consensus 298 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 376 (491)
T 4gc0_A 298 YYAPEVFKTLG-ASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSM 376 (491)
T ss_dssp HHHHHHHHHSS-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred hcchHHHHhcC-CCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 33455555555 5555566667777888899999999999999999999998888888776655431 10122222222
Q ss_pred HHhhcc-hhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh----------hhHHHHHHHHHHHHHHH
Q psy8697 117 ICAGIG-GGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL----------DWRSLSYCFLALVLISG 184 (508)
Q Consensus 117 ~l~G~~-~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l----------~wr~~f~~~~~~~~~~~ 184 (508)
++...+ .....+ ...+.+|.+|.+.|++++++......+|.++++.+...+ ++...|++.++++++..
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~ 456 (491)
T 4gc0_A 377 LFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAA 456 (491)
T ss_dssp HHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 222222 222345 788999999999999999999999999988887766544 34567888888888877
Q ss_pred HhhhhcCCCCc
Q psy8697 185 LVLICFAPESP 195 (508)
Q Consensus 185 ~~~~~~l~esp 195 (508)
+..++++||+.
T Consensus 457 i~~~~~~PETk 467 (491)
T 4gc0_A 457 LFMWKFVPETK 467 (491)
T ss_dssp HHHHHHCCCCT
T ss_pred HHHHheecCCC
Confidence 77888999984
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.03 E-value=1.2e-09 Score=113.34 Aligned_cols=155 Identities=12% Similarity=0.094 Sum_probs=115.3
Q ss_pred cchhhhcHHHHHHH-hC------Ccchh-hHHHHHHHHHHHHHHHHHHHhhccc-CCeeehhhhhhHHHHHHHHHhhccc
Q psy8697 280 VYPVIFYAMQLFKE-VG------TEIDE-SHALVFLGIIRFGMSVVTTVLARGF-GRKQLLIVSAAGLGVSSILLSSNLL 350 (508)
Q Consensus 280 ~~~~~~~~~~~~~~-~g------~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~-grr~~l~~~~~~~~~~~~~l~~~~~ 350 (508)
++....+.+.++.+ .| .+... ........++..++.++.|+++||+ |||+.+..+.++.+++.++..
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~---- 103 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA---- 103 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH----
Confidence 44566677777665 66 65544 4677778888899999999999999 999999999988888887777
Q ss_pred cccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhh
Q psy8697 351 MKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTM 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (508)
... .+.+...+...+.+.+. ....+...++
T Consensus 104 -------------~~~------------------------------------~~~~~~~~~~~l~g~~~-~~~~~~~~~~ 133 (524)
T 2xut_A 104 -------------IFE------------------------------------HSVQGFYTGLFLIALGS-GGIKPLVSSF 133 (524)
T ss_dssp -------------HTS------------------------------------SCHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred -------------Hhc------------------------------------ccHHHHHHHHHHHHHhc-cccchhHHHH
Confidence 311 02233333333333333 3345666799
Q ss_pred hhccCcccchhhHHHH---HHHHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhhee
Q psy8697 431 ISELLPSYARGVCSGL---MISYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFV 488 (508)
Q Consensus 431 ~~e~~p~~~r~~~~g~---~~~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~ 488 (508)
+.|.+|++.|+++.+. .+....+|..++|.+.+.+.+. +|...|.+.+++.++..+..
T Consensus 134 ~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~ 195 (524)
T 2xut_A 134 MGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFF 195 (524)
T ss_dssp HHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999876666 8889999999999999999987 99988988887766655443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=33.95 E-value=11 Score=19.56 Aligned_cols=13 Identities=31% Similarity=0.534 Sum_probs=10.5
Q ss_pred hhhhhhcccchhH
Q psy8697 74 IGPIMDYIGRKWS 86 (508)
Q Consensus 74 ~g~l~Dr~Grk~~ 86 (508)
+|.+..+||||.+
T Consensus 3 fgklikkfgrkai 15 (26)
T 2g9p_A 3 FGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHTSHHH
T ss_pred HHHHHHHHhHHHH
Confidence 5788899999864
Done!