Query psy8697
Match_columns 508
No_of_seqs 433 out of 1381
Neff 9.7
Searched_HMMs 13730
Date Fri Aug 16 16:56:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy8697.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/8697hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 100.0 4.9E-35 3.6E-39 296.5 22.7 394 30-506 37-444 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.9 5.9E-27 4.3E-31 232.5 19.0 364 38-500 27-408 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 99.3 2.9E-12 2.1E-16 125.2 13.7 142 51-194 256-403 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 99.2 9.7E-12 7.1E-16 123.5 7.9 160 283-494 44-206 (447)
5 d1u7ga_ f.44.1.1 (A:) Ammonium 24.5 2.2E+02 0.016 24.9 11.4 101 62-164 230-331 (383)
6 d2axtt1 f.23.34.1 (T:1-30) Pho 23.9 39 0.0029 16.9 2.7 11 186-196 18-28 (30)
7 d2fyuk1 f.23.15.1 (K:1-53) Sub 14.5 73 0.0053 19.1 2.9 39 134-172 3-41 (53)
8 d1fs1b1 a.157.1.1 (B:86-140) C 5.9 1.2E+02 0.0088 18.3 1.6 12 496-507 43-54 (55)
9 d2iuba2 f.17.3.1 (A:286-349) M 4.2 2.5E+02 0.018 17.1 2.4 24 168-191 37-60 (64)
10 d1v54g_ f.23.2.1 (G:) Mitochon 2.6 6.5E+02 0.048 16.3 3.3 21 169-189 16-36 (84)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=4.9e-35 Score=296.49 Aligned_cols=394 Identities=13% Similarity=0.112 Sum_probs=274.1
Q ss_pred hhhchhhhHHHHhhhcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcC----
Q psy8697 30 RWSGLFYYLVYLKYLTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILAD---- 105 (508)
Q Consensus 30 ~~~~~~~~~~~~~~i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~---- 105 (508)
.+.+...+....|.++ |++ .|++|.|++.+++.+++.++++++|+++||+|||+++..+.++.+++.+++++++
T Consensus 37 ~~~~~~~~~~~~p~~~-~~g-~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (447)
T d1pw4a_ 37 YYLVRKNFALAMPYLV-EQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS 114 (447)
T ss_dssp HHHHHTSHHHHHHHTT-SST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS
T ss_pred HHHHHHHHHHHHHHHH-HhC-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhh
Confidence 3333344566678775 455 9999999999999999999999999999999999999999999999999998764
Q ss_pred CcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHH
Q psy8697 106 PGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHENFRPAILCLNSVFISCGILLTTILNLYL-----DWRSLSYCFLAL 179 (508)
Q Consensus 106 ~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l-----~wr~~f~~~~~~ 179 (508)
+ ++.+++.|++.|++.|...+ ..+++.|++|+++|++++++.+.+..+|..+++.++... +||+.|++.+++
T Consensus 115 ~--~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~ 192 (447)
T d1pw4a_ 115 S--IAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFC 192 (447)
T ss_dssp S--SSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHH
T ss_pred h--HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhh
Confidence 6 89999999999999999999 999999999999999999999999999999999887765 899999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCc
Q psy8697 180 VLISGLVLICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTR 259 (508)
Q Consensus 180 ~~~~~~~~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (508)
.++..++.+++.+|+|+.......++..++..++.. ++.+++...++...+..++++
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 249 (447)
T d1pw4a_ 193 AILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYN-----------------------EKAEQELTAKQIFMQYVLPNK 249 (447)
T ss_dssp HHHHHHHHHHHCCCSSTTTCCCSCTTTCCC------------------------------------CCTHHHHHHTSSCH
T ss_pred HHHHHHHHHHhcccchhhcccchhhhhhhhcccchh-----------------------hccccccchhhHHHHHHHcCc
Confidence 888777778888888764322211100000000000 000001112222223244444
Q ss_pred ccchhHHHHHHHHHHHhhcccchhhhcHHHHHHH-hCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhH
Q psy8697 260 ECYKPLILLVILFTLQQFTGVYPVIFYAMQLFKE-VGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAG 337 (508)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~ 337 (508)
..+. .....+......+....+.|.++.+ .+.+... ........+..+++.++.+++.||++|++........
T Consensus 250 ~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 324 (447)
T d1pw4a_ 250 LLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFF 324 (447)
T ss_dssp HHHH-----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred hHHH-----HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhccccccccccchh
Confidence 3322 2222222233355677788888876 4555444 4667778888999999999999999988765554444
Q ss_pred HHHHHHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHH
Q psy8697 338 LGVSSILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVF 417 (508)
Q Consensus 338 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (508)
..+...... .+..... ...+...+...+.+
T Consensus 325 ~~~~~~~~~-----------------~~~~~~~--------------------------------~~~~~~~~~~~~~g- 354 (447)
T d1pw4a_ 325 MTLVTIATI-----------------VYWMNPA--------------------------------GNPTVDMICMIVIG- 354 (447)
T ss_dssp HHHHHHHHH-----------------HTTSCCT--------------------------------TCHHHHHHHHHHHH-
T ss_pred HHHHHHHHH-----------------HHHhccc--------------------------------ccHHHHHHHHHHHH-
Confidence 443333333 2111110 12333333333333
Q ss_pred HHhhcchhhhHhhhhccCcccchhhHHHHHHHHHHHH-HHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccC
Q psy8697 418 FSAVGVIVIPWTMISELLPSYARGVCSGLMISYGYVC-MFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPET 495 (508)
Q Consensus 418 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g-~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (508)
+...+..+....+..|.+|++.||++.|+.+.+++++ .+++|.+.|.+.+. |+...+.+.+++.+++.++.+++.++.
T Consensus 355 ~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (447)
T d1pw4a_ 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE 434 (447)
T ss_dssp HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445666789999999999999999999998874 56689999999998 988888888887777766655544443
Q ss_pred CCCChHHHHhh
Q psy8697 496 KGKTFVEIEKY 506 (508)
Q Consensus 496 ~~~~~~~~~~~ 506 (508)
+ |+.++..+|
T Consensus 435 ~-~r~~~~~~e 444 (447)
T d1pw4a_ 435 K-RRHEQLLQE 444 (447)
T ss_dssp H-HHHHGGGGG
T ss_pred c-ccHHHHHHh
Confidence 3 333444444
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.94 E-value=5.9e-27 Score=232.52 Aligned_cols=364 Identities=12% Similarity=0.071 Sum_probs=242.4
Q ss_pred HHHHhh-hcccccccCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHH----H
Q psy8697 38 LVYLKY-LTRHYIVMFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIEL----L 112 (508)
Q Consensus 38 ~~~~~~-i~~~~~~~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~----l 112 (508)
.|.+|. +.++++ .|+++.|++.+++.++..++++++|+++||+||||+++++..+..++..+..+..+ ... .
T Consensus 27 ~~~l~~~l~~~~g-~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 103 (417)
T d1pv7a_ 27 FPFFPIWLHDINH-ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIF--GPLLQYNI 103 (417)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTH--HHHHHTTC
T ss_pred HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhh--hhhHHHHH
Confidence 555665 555566 99999999999999999999999999999999999999999999999988888766 433 3
Q ss_pred HHHHHHhhcchhhHHH-HHHHhhhccCC--CCchhHHHHHHHHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHh
Q psy8697 113 YLSKICAGIGGGMSTV-AMVYVSEICHE--NFRPAILCLNSVFISCGILLTTILNLYL---DWRSLSYCFLALVLISGLV 186 (508)
Q Consensus 113 ~~~r~l~G~~~g~~~~-~~~~i~e~~~~--~~rg~~~~~~~~~~~lG~~~g~~l~~~l---~wr~~f~~~~~~~~~~~~~ 186 (508)
++.+.+.+.+.+.... ......+..++ +++.+..+........|..+++.+++.+ +|+..+........+..++
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 183 (417)
T d1pv7a_ 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL 183 (417)
T ss_dssp HHHHHHTTTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhcccccccchhhcccccccchhhhhHHHHHHHhhhhccccccccccccccccccccccccchhhHHHHHHHH
Confidence 5566666666555555 44444433332 3445566777788888888888888877 6677777777666665777
Q ss_pred hhhcCCCCchhhhhcccccchhhhHHHHHHHHHHHhCChhhhHHHHHHHHHhhhhhhhhhhhHHHHHHHhcCcccchhHH
Q psy8697 187 LICFAPESPHWLINMDRTANVNKRMAKAEKSLKFLNRNPEIFEKEWRVLCQVRTRYDETRNKKALWRQILTTRECYKPLI 266 (508)
Q Consensus 187 ~~~~l~esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (508)
..+..+|+|+...++ ++.+ +.+++.......+ ..+.+..+....
T Consensus 184 ~~~~~~~~~~~~~~~-------~~~~----------------------------~~~~~~~~~~~~~-~~~~~~~~~~~~ 227 (417)
T d1pv7a_ 184 LFFAKTDAPSSATVA-------NAVG----------------------------ANHSAFSLKLALE-LFRQPKLWFLSL 227 (417)
T ss_dssp HHSSCCCSCSSSCSS-------HHHH----------------------------SCCCCCCHHHHHH-HTTSSHHHHHHH
T ss_pred HHHHhcccccchhhh-------hhhh----------------------------hhccccccccccc-ccccccccchhh
Confidence 778888876532221 0000 0001111111122 333333222222
Q ss_pred HHHHHHHHHhhcccchhhhcHHHHHHHhCCcc----hh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHH
Q psy8697 267 LLVILFTLQQFTGVYPVIFYAMQLFKEVGTEI----DE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVS 341 (508)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~ 341 (508)
........ ........+.+......+. .. ........+...++..+.+++.||.++|+.+..+..+.+++
T Consensus 228 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 228 YVIGVSCT-----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHH-----HHhhhccccccccccccccccchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHh
Confidence 22221111 1111122222222211111 11 23455566777888899999999999999999999988888
Q ss_pred HHHHhhccccccccccccccCccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhh
Q psy8697 342 SILLSSNLLMKSTFTNCAIQSNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAV 421 (508)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (508)
.+.+. .. .+.+...+...+.+.+.+.
T Consensus 303 ~~~~~-----------------~~-------------------------------------~~~~~~~~~~~l~g~~~~~ 328 (417)
T d1pv7a_ 303 IIGSS-----------------FA-------------------------------------TSALEVVILKTLHMFEVPF 328 (417)
T ss_dssp HHHHH-----------------TC-------------------------------------CCHHHHHHHHHHHHHHHHH
T ss_pred hhccc-----------------cc-------------------------------------cccchhhHHHHHHHHHHHH
Confidence 88877 31 1334444444444444443
Q ss_pred cchhhhHhhhhccCcccchhhHHHHHH-HHHHHHHHHHHHHhHHHhhh-ccchhHHHHHHHHHHhhheeEEEeccCCCCC
Q psy8697 422 GVIVIPWTMISELLPSYARGVCSGLMI-SYGYVCMFFMVKAFPFAIHS-SVIGTFNVFGLVSFTLVGFVYFYLPETKGKT 499 (508)
Q Consensus 422 ~~~~~~~~~~~e~~p~~~r~~~~g~~~-~~~~~g~~i~~~~~g~l~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 499 (508)
..+...+++.|.+|++.|+++.|+.. ....+|..++|.+.|.+.|. |+..++++.+++.++..++..+.+++++..+
T Consensus 329 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (417)
T d1pv7a_ 329 -LLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp -HHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTT
T ss_pred -HHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccc
Confidence 44566699999999999999999865 55779999999999999999 9999999999888888777777777766665
Q ss_pred h
Q psy8697 500 F 500 (508)
Q Consensus 500 ~ 500 (508)
.
T Consensus 408 ~ 408 (417)
T d1pv7a_ 408 L 408 (417)
T ss_dssp H
T ss_pred h
Confidence 5
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.35 E-value=2.9e-12 Score=125.19 Aligned_cols=142 Identities=13% Similarity=0.095 Sum_probs=128.0
Q ss_pred cCCccchhHHHHHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-H
Q psy8697 51 MFGSHFGPTTSFVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-A 129 (508)
Q Consensus 51 ~s~~~~g~~~s~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~ 129 (508)
.+....+...+...++..++..+.+++.||+|||+.+..+..+.+++.++..+.++ .+.+++..++.|++.+...+ .
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~~~~~ 333 (417)
T d1pv7a_ 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATS--ALEVVILKTLHMFEVPFLLVGC 333 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCCC--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhcccccccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccccccc--cchhhHHHHHHHHHHHHHHHHH
Confidence 56677788889999999999999999999999999999999999999999999999 99999999999999999999 9
Q ss_pred HHHhhhccCCCCchhHHHHH-HHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHHhhhhcCCCC
Q psy8697 130 MVYVSEICHENFRPAILCLN-SVFISCGILLTTILNLYL----DWRSLSYCFLALVLISGLVLICFAPES 194 (508)
Q Consensus 130 ~~~i~e~~~~~~rg~~~~~~-~~~~~lG~~~g~~l~~~l----~wr~~f~~~~~~~~~~~~~~~~~l~es 194 (508)
.+++.|.+|+++|+++.++. +....+|..++|.+++++ ||+..|++.+++.++..++..+.+++.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 334 FKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999985 566789999999988877 899999999988888666666666654
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.19 E-value=9.7e-12 Score=123.54 Aligned_cols=160 Identities=9% Similarity=-0.013 Sum_probs=118.0
Q ss_pred hhhcHHHHHHHhCCcchh-hHHHHHHHHHHHHHHHHHHHhhcccCCeeehhhhhhHHHHHHHHHhhcccccccccccccc
Q psy8697 283 VIFYAMQLFKEVGTEIDE-SHALVFLGIIRFGMSVVTTVLARGFGRKQLLIVSAAGLGVSSILLSSNLLMKSTFTNCAIQ 361 (508)
Q Consensus 283 ~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~l~dr~grr~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (508)
+....|. +++.|++.++ ........++..++.++.|+++||+|||+.+..+.++.+++.++.+
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~--------------- 107 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG--------------- 107 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhcc---------------
Confidence 3344454 4556776555 5778888899999999999999999999999999999988888776
Q ss_pred CccccccCCcccccccccccccCCCCCCCCCCCccccCCCCCcchHHHHHHHHHHHHHhhcchhhhHhhhhccCcccchh
Q psy8697 362 SNEYLVTPNESMRLDHSTWHNEMQVPPSAFNTSSCVDHSSLSSDWLSLLFILLYVFFSAVGVIVIPWTMISELLPSYARG 441 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 441 (508)
...... ...+...+...+.+.+.+. ..+....++.|.+|+++|+
T Consensus 108 --~~~~~~---------------------------------~~~~~~~~~~~~~g~~~~~-~~~~~~~~i~~~~~~~~r~ 151 (447)
T d1pw4a_ 108 --FVPWAT---------------------------------SSIAVMFVLLFLCGWFQGM-GWPPCGRTMVHWWSQKERG 151 (447)
T ss_dssp --HCHHHH---------------------------------SSSSHHHHHHHHHHHHHHH-THHHHHHHHHTTCTTTHHH
T ss_pred --ccchhh---------------------------------hhHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHhhccc
Confidence 322110 1233344444444443333 3455568999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHhhh--ccchhHHHHHHHHHHhhheeEEEecc
Q psy8697 442 VCSGLMISYGYVCMFFMVKAFPFAIHS--SVIGTFNVFGLVSFTLVGFVYFYLPE 494 (508)
Q Consensus 442 ~~~g~~~~~~~~g~~i~~~~~g~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (508)
++.++.+....+|..+++.+.+.+.+. +|.+.+++.+.+.++..++.+.+.++
T Consensus 152 ~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 152 GIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCC
T ss_pred ccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhccc
Confidence 999999999999999999998887776 78888888887777766666555544
No 5
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=24.54 E-value=2.2e+02 Score=24.94 Aligned_cols=101 Identities=11% Similarity=0.111 Sum_probs=50.6
Q ss_pred HHHHHHhhhhhchhhhhhcccchhHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHhhcchhhHHH-HHHHhhhccCCC
Q psy8697 62 FVIITSPVGSTVIGPIMDYIGRKWSLILVCVPYIISSLLTILADPGNIELLYLSKICAGIGGGMSTV-AMVYVSEICHEN 140 (508)
Q Consensus 62 ~~~lg~~~~~~~~g~l~Dr~Grk~~l~~~~~~~~i~~~l~~~~~~~~~~~l~~~r~l~G~~~g~~~~-~~~~i~e~~~~~ 140 (508)
........+......+.|++-+||.=.....-..++.+....+... +.. -..-++.|+..|.... ...++.+..+-+
T Consensus 230 ~nt~~a~a~~~~~~~~~~~~~~~k~~~~~~~nG~LaGLVaita~~~-~v~-p~~A~~iG~i~g~i~~~~~~~l~~~~~iD 307 (383)
T d1u7ga_ 230 VNTVVATAAAILGWIFGEWALRGLPSLLGACSGAIAGLVGVTPACG-YIG-VGGALIIGVVAGLAGLWGVTMLKRLLRVD 307 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHTTTTT-TSC-HHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhhhcccCcc-ccc-hhhHHHHHhhccHHHHHHHHHHHhhcccc
Confidence 3334444445555556666544443222222222333222222110 111 1234455766677766 666666666666
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q psy8697 141 FRPAILCLNSVFISCGILLTTILN 164 (508)
Q Consensus 141 ~rg~~~~~~~~~~~lG~~~g~~l~ 164 (508)
+---+..+...+.-.|.+..++.+
T Consensus 308 D~~~~~~vHg~~Gi~G~l~~glfa 331 (383)
T d1u7ga_ 308 DPCDVFGVHGVCGIVGCIMTGIFA 331 (383)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHT
T ss_pred cccceEeehhhhHHHHHHHHHHhc
Confidence 666667777766666666665553
No 6
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=23.91 E-value=39 Score=16.95 Aligned_cols=11 Identities=27% Similarity=0.492 Sum_probs=7.0
Q ss_pred hhhhcCCCCch
Q psy8697 186 VLICFAPESPH 196 (508)
Q Consensus 186 ~~~~~l~esp~ 196 (508)
....+.+|+|+
T Consensus 18 ffaiffreppr 28 (30)
T d2axtt1 18 FFAIFFREPPR 28 (30)
T ss_dssp HHHHHTSCCCC
T ss_pred HHHHHhcCCCC
Confidence 34456788875
No 7
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.53 E-value=73 Score=19.12 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=26.6
Q ss_pred hhccCCCCchhHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q psy8697 134 SEICHENFRPAILCLNSVFISCGILLTTILNLYLDWRSL 172 (508)
Q Consensus 134 ~e~~~~~~rg~~~~~~~~~~~lG~~~g~~l~~~l~wr~~ 172 (508)
+....+++...+..+.-.....|.+-+-.+..+-+||..
T Consensus 3 ~k~iG~k~~~ia~~wips~~~~G~a~gl~lvy~TDWkli 41 (53)
T d2fyuk1 3 TRFLGPRYRQLARNWVPTASLWGAVGAVGLVWATDWRLI 41 (53)
T ss_dssp GGGCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhheeeeeeehHHHH
Confidence 444556666677777777777777766666666689843
No 8
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.86 E-value=1.2e+02 Score=18.26 Aligned_cols=12 Identities=67% Similarity=0.725 Sum_probs=6.8
Q ss_pred CCCChHHHHhhh
Q psy8697 496 KGKTFVEIEKYF 507 (508)
Q Consensus 496 ~~~~~~~~~~~~ 507 (508)
|+|+.+|+.+.|
T Consensus 43 kgKt~eeiR~~f 54 (55)
T d1fs1b1 43 KGKTPEEIRKTF 54 (55)
T ss_dssp TTCCHHHHHHHT
T ss_pred cCCCHHHHHHHh
Confidence 455566665555
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=4.24 E-value=2.5e+02 Score=17.05 Aligned_cols=24 Identities=13% Similarity=0.346 Sum_probs=9.2
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhcC
Q psy8697 168 DWRSLSYCFLALVLISGLVLICFA 191 (508)
Q Consensus 168 ~wr~~f~~~~~~~~~~~~~~~~~l 191 (508)
+|.+.|+....+.+...++..++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~f 60 (64)
T d2iuba2 37 RWKWGYPVVLAVMGVIAVIMVVYF 60 (64)
T ss_dssp -----CHHHHHHHHHHHHHHHTTT
T ss_pred CccHHHHHHHHHHHHHHHHHHHHH
Confidence 566555555555544344444443
No 10
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.63 E-value=6.5e+02 Score=16.30 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhh
Q psy8697 169 WRSLSYCFLALVLISGLVLIC 189 (508)
Q Consensus 169 wr~~f~~~~~~~~~~~~~~~~ 189 (508)
||.+.++.++++++++.+-.+
T Consensus 16 Wkkis~~va~P~i~l~~~n~~ 36 (84)
T d1v54g_ 16 WRFLTFGLALPSVALCTLNSW 36 (84)
T ss_dssp HHHHHHHTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 998888888888774444433
Done!